BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254781196|ref|YP_003065609.1| DNA ligase, NAD-dependent
[Candidatus Liberibacter asiaticus str. psy62]
(119 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
Results from round 1
>gi|254781196|ref|YP_003065609.1| DNA ligase, NAD-dependent [Candidatus Liberibacter asiaticus str.
psy62]
gi|254040873|gb|ACT57669.1| DNA ligase, NAD-dependent [Candidatus Liberibacter asiaticus str.
psy62]
Length = 119
Score = 247 bits (631), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 119/119 (100%), Positives = 119/119 (100%)
Query: 1 MYNFDRVFRSSKFENEHNITPAQWKKLLTLEAKFLPNKRALESWLDKAKKVTSLSKGEAM 60
MYNFDRVFRSSKFENEHNITPAQWKKLLTLEAKFLPNKRALESWLDKAKKVTSLSKGEAM
Sbjct: 1 MYNFDRVFRSSKFENEHNITPAQWKKLLTLEAKFLPNKRALESWLDKAKKVTSLSKGEAM 60
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY
Sbjct: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
>gi|254780131|ref|YP_003064544.1| DNA ligase, NAD-dependent [Candidatus Liberibacter asiaticus str.
psy62]
gi|254039808|gb|ACT56604.1| DNA ligase, NAD-dependent [Candidatus Liberibacter asiaticus str.
psy62]
gi|317120701|gb|ADV02524.1| DNA ligase [Liberibacter phage SC1]
gi|317120744|gb|ADV02566.1| DNA ligase [Liberibacter phage SC2]
gi|317120758|gb|ADV02579.1| DNA ligase [Liberibacter phage SC2]
gi|317120805|gb|ADV02626.1| DNA ligase [Liberibacter phage SC1]
gi|317120845|gb|ADV02666.1| DNA ligase [Candidatus Liberibacter asiaticus]
Length = 119
Score = 245 bits (626), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 118/119 (99%), Positives = 119/119 (100%)
Query: 1 MYNFDRVFRSSKFENEHNITPAQWKKLLTLEAKFLPNKRALESWLDKAKKVTSLSKGEAM 60
MYNFDRVFRSSKFENEHNITPAQWKKLLTLEAKFLPNKRALESWLDKAKKVTSLSKGEAM
Sbjct: 1 MYNFDRVFRSSKFENEHNITPAQWKKLLTLEAKFLPNKRALESWLDKAKKVTSLSKGEAM 60
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
IEVEYLVKIALHHQKWYYRLD+PLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY
Sbjct: 61 IEVEYLVKIALHHQKWYYRLDDPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
>gi|315121970|ref|YP_004062459.1| DNA ligase, NAD-dependent [Candidatus Liberibacter solanacearum
CLso-ZC1]
gi|315122938|ref|YP_004063427.1| DNA ligase, NAD-dependent [Candidatus Liberibacter solanacearum
CLso-ZC1]
gi|313495372|gb|ADR51971.1| DNA ligase, NAD-dependent [Candidatus Liberibacter solanacearum
CLso-ZC1]
gi|313496340|gb|ADR52939.1| DNA ligase, NAD-dependent [Candidatus Liberibacter solanacearum
CLso-ZC1]
Length = 127
Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 50/100 (50%), Positives = 62/100 (62%), Gaps = 4/100 (4%)
Query: 23 QWKKLLTLEAKFLPNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRL-- 80
Q K LL EAKFLP R L ++ K V+ LS EA+IE EYL KI LHH++WYYRL
Sbjct: 29 QLKSLLKFEAKFLPTPRQLLKIINDFKPVSQLSFWEALIETEYLTKIVLHHRRWYYRLSD 88
Query: 81 DNPLFTDGLYDRVSERLDALQEQFPELFDEDHP-WNTVGY 119
+ PL D YD++ R+ L E FPEL+ HP + VGY
Sbjct: 89 ETPLL-DADYDKIEIRIIKLAEHFPELYSLAHPIISEVGY 127
>gi|299131914|ref|ZP_07025109.1| DNA ligase, NAD-dependent [Afipia sp. 1NLS2]
gi|298592051|gb|EFI52251.1| DNA ligase, NAD-dependent [Afipia sp. 1NLS2]
Length = 706
Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 31/77 (40%), Positives = 51/77 (66%), Gaps = 6/77 (7%)
Query: 47 KAKK----VTSLSKGEAMIEVEYL-VKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQ 101
KAKK V +L+K +A +E+ L ++I++H ++ YY+ D P +D YD++ +RL A++
Sbjct: 4 KAKKAVTPVENLTKAQAKVELTRLALEISMHDER-YYQKDAPTVSDADYDKLRQRLSAIE 62
Query: 102 EQFPELFDEDHPWNTVG 118
E+FPEL +D P VG
Sbjct: 63 ERFPELVAKDSPSQKVG 79
>gi|209550159|ref|YP_002282076.1| NAD-dependent DNA ligase LigA [Rhizobium leguminosarum bv. trifolii
WSM2304]
gi|254781399|sp|B5ZWH9|DNLJ_RHILW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|209535915|gb|ACI55850.1| DNA ligase, NAD-dependent [Rhizobium leguminosarum bv. trifolii
WSM2304]
Length = 718
Score = 57.0 bits (136), Expect = 8e-07, Method: Composition-based stats.
Identities = 30/68 (44%), Positives = 37/68 (54%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V +L+ EA E+E L K HH Y+ D P +D YD + R DAL+ QFPEL E
Sbjct: 8 VDTLTIEEAAAELERLAKEIAHHDALYHGKDRPQISDADYDALKRRNDALEVQFPELIRE 67
Query: 111 DHPWNTVG 118
D P VG
Sbjct: 68 DSPSRRVG 75
>gi|90418183|ref|ZP_01226095.1| DNA ligase [Aurantimonas manganoxydans SI85-9A1]
gi|90337855|gb|EAS51506.1| DNA ligase [Aurantimonas manganoxydans SI85-9A1]
Length = 703
Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 37/70 (52%)
Query: 49 KKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF 108
K V +L + EA E+E L H + YYR D P TD YD + R A++ +FPEL
Sbjct: 4 KAVETLDRDEAAAELERLAGEIAAHDRAYYREDAPTVTDAEYDTLRRRNAAIEARFPELI 63
Query: 109 DEDHPWNTVG 118
ED P VG
Sbjct: 64 REDSPSARVG 73
>gi|190892570|ref|YP_001979112.1| DNA ligase (NAD+) protein [Rhizobium etli CIAT 652]
gi|254781398|sp|B3PTU7|DNLJ_RHIE6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|190697849|gb|ACE91934.1| DNA ligase (NAD+) protein [Rhizobium etli CIAT 652]
Length = 718
Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 37/68 (54%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V +L+ EA E+E L K HH Y+ D P +D YD + R DAL+ +FPEL E
Sbjct: 8 VDTLTIEEAAAELERLAKEIAHHDALYHGKDQPEISDADYDALKRRNDALEARFPELIRE 67
Query: 111 DHPWNTVG 118
D P VG
Sbjct: 68 DSPSRHVG 75
>gi|218515813|ref|ZP_03512653.1| NAD-dependent DNA ligase LigA [Rhizobium etli 8C-3]
Length = 216
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 38/72 (52%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
+ V +L+ EA E+E L K HH Y+ D P +D YD + R DAL+ +FPE
Sbjct: 4 EGSAVDTLTIEEAAAELERLAKEIAHHDALYHGKDQPEISDADYDALKRRNDALEARFPE 63
Query: 107 LFDEDHPWNTVG 118
L ED P VG
Sbjct: 64 LIREDSPSRHVG 75
>gi|327194610|gb|EGE61460.1| DNA ligase (NAD+) protein [Rhizobium etli CNPAF512]
Length = 718
Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 38/72 (52%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
+ V +L+ EA E+E L K HH Y+ D P +D YD + R DAL+ +FPE
Sbjct: 4 EGSAVDTLTIEEAAAELERLAKEIAHHDSLYHGKDQPEISDADYDALKRRNDALEVRFPE 63
Query: 107 LFDEDHPWNTVG 118
L ED P VG
Sbjct: 64 LIREDSPSRHVG 75
>gi|241205543|ref|YP_002976639.1| NAD-dependent DNA ligase LigA [Rhizobium leguminosarum bv. trifolii
WSM1325]
gi|240859433|gb|ACS57100.1| DNA ligase, NAD-dependent [Rhizobium leguminosarum bv. trifolii
WSM1325]
Length = 718
Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 39/72 (54%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
++ V +L+ EA E+E L K HH Y+ D P +D YD + R DAL+ +FPE
Sbjct: 4 ESSAVDTLTIEEAAAELERLAKEIAHHDALYHGKDRPEISDADYDALKRRNDALEVRFPE 63
Query: 107 LFDEDHPWNTVG 118
L ED P VG
Sbjct: 64 LIREDSPSRHVG 75
>gi|218678588|ref|ZP_03526485.1| NAD-dependent DNA ligase LigA [Rhizobium etli CIAT 894]
Length = 264
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 38/72 (52%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
+ V +L+ EA E+E L K HH Y+ D P +D YD + R DAL+ +FPE
Sbjct: 4 EGSAVDTLTIEEAAAELERLAKEIAHHDALYHGKDQPEISDADYDALKRRNDALEVRFPE 63
Query: 107 LFDEDHPWNTVG 118
L ED P VG
Sbjct: 64 LIREDSPSRRVG 75
>gi|322437173|ref|YP_004219385.1| DNA ligase, NAD-dependent [Acidobacterium sp. MP5ACTX9]
gi|321164900|gb|ADW70605.1| DNA ligase, NAD-dependent [Acidobacterium sp. MP5ACTX9]
Length = 704
Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SKG +V+ L + HH+ YY +D P TDG YD + RL AL+ + PE+ D P
Sbjct: 1 MSKGSVEEQVKELREQLEHHEHLYYVMDTPELTDGQYDSLMNRLKALEAEHPEMVTSDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|316933200|ref|YP_004108182.1| NAD-dependent DNA ligase [Rhodopseudomonas palustris DX-1]
gi|315600914|gb|ADU43449.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris DX-1]
Length = 715
Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 42/73 (57%)
Query: 46 DKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFP 105
+ A + +L+K +A +E+ L + H K YY+ D P +D YD + RL+A++++FP
Sbjct: 6 NPAPDIATLTKAKAKVELMRLRLVIEGHDKAYYQDDAPKISDADYDALRRRLEAIEQKFP 65
Query: 106 ELFDEDHPWNTVG 118
EL P TVG
Sbjct: 66 ELVSASSPTQTVG 78
>gi|218460243|ref|ZP_03500334.1| NAD-dependent DNA ligase LigA [Rhizobium etli Kim 5]
Length = 327
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 38/72 (52%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
+ V +L+ EA E+E L K HH Y+ D P +D YD + R DAL+ +FPE
Sbjct: 4 EGSAVDTLTIEEAAAELERLAKEIAHHDALYHGKDQPEISDADYDALKRRNDALEARFPE 63
Query: 107 LFDEDHPWNTVG 118
L ED P VG
Sbjct: 64 LIREDSPSRHVG 75
>gi|86358438|ref|YP_470330.1| NAD-dependent DNA ligase LigA [Rhizobium etli CFN 42]
gi|123738303|sp|Q2K6D3|DNLJ_RHIEC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|86282540|gb|ABC91603.1| DNA ligase (NAD+) protein [Rhizobium etli CFN 42]
Length = 718
Score = 55.1 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 37/68 (54%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V +L+ EA E+E L + HH Y+ D P +D YD + R DAL+ +FPEL E
Sbjct: 8 VETLTIEEAAAELERLAREIAHHDALYHGKDQPEISDADYDALKRRNDALEARFPELIRE 67
Query: 111 DHPWNTVG 118
D P VG
Sbjct: 68 DSPSRRVG 75
>gi|146342488|ref|YP_001207536.1| DNA ligase [Bradyrhizobium sp. ORS278]
gi|166215400|sp|A4YZJ3|DNLJ_BRASO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|146195294|emb|CAL79319.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+])
[Bradyrhizobium sp. ORS278]
Length = 716
Score = 53.9 bits (128), Expect = 8e-06, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 38/68 (55%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V L+K +A +E + L H + YY+ D P +D YD + R +A++++FPEL
Sbjct: 13 VADLTKAQAKVEWKRLALELETHDRLYYQEDAPKISDAAYDELRRRFNAIEKRFPELVSR 72
Query: 111 DHPWNTVG 118
D P TVG
Sbjct: 73 DSPSQTVG 80
>gi|209884394|ref|YP_002288251.1| DNA ligase, NAD-dependent [Oligotropha carboxidovorans OM5]
gi|254781382|sp|B6JB45|DNLJ_OLICO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|209872590|gb|ACI92386.1| DNA ligase, NAD-dependent [Oligotropha carboxidovorans OM5]
Length = 706
Score = 53.5 bits (127), Expect = 8e-06, Method: Composition-based stats.
Identities = 30/77 (38%), Positives = 48/77 (62%), Gaps = 6/77 (7%)
Query: 47 KAKK----VTSLSKGEAMIEVEYL-VKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQ 101
K+KK V L+K +A +E + L ++IA+H ++ YY+ D P +D YD + +RL+A++
Sbjct: 4 KSKKPLPSVDQLTKAQAKVEHKRLALEIAMHDER-YYQKDAPTVSDAAYDSLRQRLNAVE 62
Query: 102 EQFPELFDEDHPWNTVG 118
+FPEL D P VG
Sbjct: 63 ARFPELVTTDSPSQKVG 79
>gi|113460523|ref|YP_718587.1| NAD-dependent DNA ligase LigA [Haemophilus somnus 129PT]
gi|122945214|sp|Q0I2H6|DNLJ_HAES1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|112822566|gb|ABI24655.1| DNA ligase (NAD+) [Haemophilus somnus 129PT]
Length = 673
Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 54 LSKGEAMI--EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
+ +G MI ++E L ++ HH+ Y+ LDNP D YDR+ +L AL++Q+PE E+
Sbjct: 1 MKQGIFMIKQQIEELRQLLRHHEYQYHVLDNPQIPDSEYDRLFHQLKALEQQYPEYASEN 60
Query: 112 HPWNTVG 118
P VG
Sbjct: 61 SPTQRVG 67
>gi|15603581|ref|NP_246655.1| NAD-dependent DNA ligase LigA [Pasteurella multocida subsp.
multocida str. Pm70]
gi|81636517|sp|Q9CKA9|DNLJ_PASMU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|12722128|gb|AAK03800.1| Lig [Pasteurella multocida subsp. multocida str. Pm70]
Length = 673
Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+E+E L + +H+ Y+ LDNP D YDR+ RL L++Q+P+ F D P VG
Sbjct: 7 LEIEQLRQTLRYHEYQYHVLDNPQIPDAEYDRLFHRLKTLEQQYPQWFSPDSPTQRVG 64
>gi|170718864|ref|YP_001784038.1| NAD-dependent DNA ligase LigA [Haemophilus somnus 2336]
gi|254781341|sp|B0USD9|DNLJ_HAES2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|168826993|gb|ACA32364.1| DNA ligase, NAD-dependent [Haemophilus somnus 2336]
Length = 667
Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++E L ++ HH+ Y+ LDNP D YDR+ +L AL++Q+PE E+ P VG
Sbjct: 5 QIEELRQLLRHHEYQYHVLDNPQIPDSEYDRLFHQLKALEQQYPEYASENSPTQRVG 61
>gi|83858905|ref|ZP_00952427.1| NAD-dependent DNA ligase [Oceanicaulis alexandrii HTCC2633]
gi|83853728|gb|EAP91580.1| NAD-dependent DNA ligase [Oceanicaulis alexandrii HTCC2633]
Length = 695
Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 38/70 (54%)
Query: 49 KKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF 108
K V +L+ EA E+E L + H K YY D P +D YD + R A++ +FPEL
Sbjct: 6 KDVNALTSDEAASELERLAREISRHDKAYYEKDAPKISDAAYDALRARNSAIEARFPELK 65
Query: 109 DEDHPWNTVG 118
+D P + VG
Sbjct: 66 RKDSPSDRVG 75
>gi|209963935|ref|YP_002296850.1| DNA ligase, NAD-dependent [Rhodospirillum centenum SW]
gi|254781401|sp|B6IRF1|DNLJ_RHOCS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|209957401|gb|ACI98037.1| DNA ligase, NAD-dependent [Rhodospirillum centenum SW]
Length = 719
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 35/68 (51%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V +L+ +A E LV+ HH+ YY D P D YD + RL L+ +FPEL
Sbjct: 12 VETLTLDQAAAEHAALVREIAHHRALYYGKDAPEIADSAYDALEHRLAGLEARFPELVTP 71
Query: 111 DHPWNTVG 118
D P TVG
Sbjct: 72 DSPTQTVG 79
>gi|92116846|ref|YP_576575.1| DNA ligase, NAD-dependent [Nitrobacter hamburgensis X14]
gi|123083742|sp|Q1QNT2|DNLJ_NITHX RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|91799740|gb|ABE62115.1| DNA ligase, NAD-dependent [Nitrobacter hamburgensis X14]
Length = 714
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 40/68 (58%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V SL++ +A IE + L H + YY+ D P +D YD + +RL+A++ +FP+L
Sbjct: 11 VDSLTRAQAKIEHKRLALEIETHNERYYQKDAPTVSDAAYDALRQRLEAIEARFPDLITA 70
Query: 111 DHPWNTVG 118
+ P TVG
Sbjct: 71 NSPTQTVG 78
>gi|319782858|ref|YP_004142334.1| DNA ligase, NAD-dependent [Mesorhizobium ciceri biovar biserrulae
WSM1271]
gi|317168746|gb|ADV12284.1| DNA ligase, NAD-dependent [Mesorhizobium ciceri biovar biserrulae
WSM1271]
Length = 734
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 40/70 (57%)
Query: 49 KKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF 108
K V SLS+ EA E++ L + H + Y+ D P+ TD YD ++ R A++E+FP L
Sbjct: 4 KPVDSLSESEAEAELKRLAEEIAEHDRRYHTEDAPVITDAEYDALARRNLAIEERFPALV 63
Query: 109 DEDHPWNTVG 118
ED P VG
Sbjct: 64 REDSPSLRVG 73
>gi|254470147|ref|ZP_05083551.1| DNA ligase, NAD-dependent [Pseudovibrio sp. JE062]
gi|211960458|gb|EEA95654.1| DNA ligase, NAD-dependent [Pseudovibrio sp. JE062]
Length = 722
Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 49 KKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF 108
K + +L+ EA +E+E L ++ + + Y+ D P+ D YD + R AL+ +FPEL
Sbjct: 9 KDIEALNAEEAALELERLARLIAEYDEAYHTQDAPIVDDATYDGLRRRNAALEAKFPELV 68
Query: 109 DEDHPWNTVG 118
D P N VG
Sbjct: 69 RADSPSNRVG 78
>gi|85714986|ref|ZP_01045971.1| NAD-dependent DNA ligase [Nitrobacter sp. Nb-311A]
gi|85698183|gb|EAQ36055.1| NAD-dependent DNA ligase [Nitrobacter sp. Nb-311A]
Length = 705
Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 39/68 (57%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V SL++ +A +E + LV H + YY+ D P +D YD + RL+A++ +FP+L
Sbjct: 11 VDSLTRSQARVEHKRLVLEIEAHNERYYQQDAPTVSDAAYDAMQRRLEAIEARFPDLVTA 70
Query: 111 DHPWNTVG 118
P TVG
Sbjct: 71 SSPTQTVG 78
>gi|302390293|ref|YP_003826114.1| DNA ligase, NAD-dependent [Thermosediminibacter oceani DSM 16646]
gi|302200921|gb|ADL08491.1| DNA ligase, NAD-dependent [Thermosediminibacter oceani DSM 16646]
Length = 672
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + EA ++ L ++ +H + YY DNP+ +D YD++ +L+ L++QFPEL D P
Sbjct: 1 MDRSEAEARIKELRELINYHNRQYYVYDNPVISDAEYDKLMRQLEKLEKQFPELITPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SQRVG 65
>gi|90021526|ref|YP_527353.1| DNA ligase (NAD+) [Saccharophagus degradans 2-40]
gi|123090491|sp|Q21JI8|DNLJ_SACD2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|89951126|gb|ABD81141.1| DNA ligase, NAD-dependent [Saccharophagus degradans 2-40]
Length = 674
Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 29/47 (61%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+H K YY LD P D YD++ + L A+++QFPEL ED P VG
Sbjct: 20 YHNKLYYVLDAPELPDAEYDKLFQELQAIEQQFPELVTEDSPTQRVG 66
>gi|103486042|ref|YP_615603.1| DNA ligase, NAD-dependent [Sphingopyxis alaskensis RB2256]
gi|123078573|sp|Q1GVQ2|DNLJ_SPHAL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|98976119|gb|ABF52270.1| DNA ligase, NAD-dependent [Sphingopyxis alaskensis RB2256]
Length = 714
Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 37/70 (52%)
Query: 49 KKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF 108
K V SL++ EA E+ L K HH K Y+ D+P +D YD + R A++E FP L
Sbjct: 2 KDVGSLTEAEAANELMRLAKQIAHHNKLYHAEDSPEISDADYDALVRRNTAIEEAFPHLI 61
Query: 109 DEDHPWNTVG 118
D P VG
Sbjct: 62 RADSPNRLVG 71
>gi|192292401|ref|YP_001993006.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris TIE-1]
gi|254781404|sp|B3QFL8|DNLJ_RHOPT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|192286150|gb|ACF02531.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris TIE-1]
Length = 715
Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 41/71 (57%)
Query: 48 AKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
A + +L+K +A +E+ L H K YY+ D P +D YD + RL+A++++FPEL
Sbjct: 8 APDIATLTKPKAKVELMRLRLEIEGHDKAYYQDDAPKISDADYDALRRRLEAIEQKFPEL 67
Query: 108 FDEDHPWNTVG 118
+ P TVG
Sbjct: 68 VNASSPTQTVG 78
>gi|166216284|sp|Q6N423|DNLJ_RHOPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
Length = 715
Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 41/71 (57%)
Query: 48 AKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
A + +L+K +A +E+ L H K YY+ D P +D YD + RL+A++++FPEL
Sbjct: 8 APDIATLTKPKAKVELMRLRLEIEGHDKAYYQDDAPKISDADYDALRRRLEAIEQKFPEL 67
Query: 108 FDEDHPWNTVG 118
+ P TVG
Sbjct: 68 VNASSPTQTVG 78
>gi|326573825|gb|EGE23778.1| NAD-dependent DNA ligase [Moraxella catarrhalis O35E]
Length = 691
Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 38/73 (52%)
Query: 46 DKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFP 105
D +K S + + + ++ L+K+ H YY +D P +DG YD + L L++Q P
Sbjct: 10 DTSKNNPSKANDQIIAQMRALIKLLKRHNHAYYVMDAPTISDGEYDGLRRTLMMLEQQHP 69
Query: 106 ELFDEDHPWNTVG 118
L D P NTVG
Sbjct: 70 NLIQPDSPINTVG 82
>gi|27262356|gb|AAN87459.1| NAD-dependent DNA ligase [Heliobacillus mobilis]
Length = 677
Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 35/61 (57%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
EA + V+ L +I HH+ YY LD P TD YD + L A+++ +PEL + D P V
Sbjct: 16 EAEVRVKELREIIRHHEYRYYVLDAPEITDADYDALMRELQAIEDTYPELVEADSPTRRV 75
Query: 118 G 118
G
Sbjct: 76 G 76
>gi|152979719|ref|YP_001345348.1| NAD-dependent DNA ligase LigA [Actinobacillus succinogenes 130Z]
gi|190359224|sp|A6VR16|DNLJ_ACTSZ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|150841442|gb|ABR75413.1| DNA ligase, NAD-dependent [Actinobacillus succinogenes 130Z]
Length = 672
Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/47 (48%), Positives = 28/47 (59%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ LDNP D YDR+ RL AL++Q PEL D P VG
Sbjct: 17 HHEYQYHVLDNPEIPDSEYDRLFHRLKALEQQHPELISADSPTQRVG 63
>gi|306844319|ref|ZP_07476911.1| DNA ligase, NAD-dependent [Brucella sp. BO1]
gi|306275391|gb|EFM57132.1| DNA ligase, NAD-dependent [Brucella sp. BO1]
Length = 719
Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 38/68 (55%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V L++ EA E+E L + HH + Y+ D+P +D YD + R +A++ +FP L +
Sbjct: 6 VEKLTELEAAAELERLARAIAHHDELYHAKDSPEISDAAYDALKRRNEAIEARFPALVRD 65
Query: 111 DHPWNTVG 118
D P VG
Sbjct: 66 DSPSRRVG 73
>gi|262369277|ref|ZP_06062605.1| DNA ligase [Acinetobacter johnsonii SH046]
gi|262315345|gb|EEY96384.1| DNA ligase [Acinetobacter johnsonii SH046]
Length = 679
Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 32/57 (56%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L++I H YY +D P D YD++ +L AL+EQ+PE D P N VG
Sbjct: 10 QMRQLIQILAQHNHAYYVMDQPTIADSEYDQLFHQLKALEEQYPEYIQPDSPINKVG 66
>gi|306843233|ref|ZP_07475843.1| DNA ligase, NAD-dependent [Brucella sp. BO2]
gi|306286556|gb|EFM58135.1| DNA ligase, NAD-dependent [Brucella sp. BO2]
Length = 719
Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 37/68 (54%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V L++ EA E+E L + HH + Y+ D+P +D YD + R +A++ FP L +
Sbjct: 6 VEKLTELEAAAELERLARAIAHHDELYHAKDSPEISDAAYDALKRRNEAIEAHFPALVRD 65
Query: 111 DHPWNTVG 118
D P VG
Sbjct: 66 DSPSRRVG 73
>gi|254719452|ref|ZP_05181263.1| NAD-dependent DNA ligase LigA [Brucella sp. 83/13]
gi|265984457|ref|ZP_06097192.1| NAD-dependent DNA ligase LigA [Brucella sp. 83/13]
gi|306839229|ref|ZP_07472046.1| DNA ligase, NAD-dependent [Brucella sp. NF 2653]
gi|264663049|gb|EEZ33310.1| NAD-dependent DNA ligase LigA [Brucella sp. 83/13]
gi|306405776|gb|EFM62038.1| DNA ligase, NAD-dependent [Brucella sp. NF 2653]
Length = 719
Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 37/68 (54%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V L++ EA E+E L + HH + Y+ D+P +D YD + R +A++ FP L +
Sbjct: 6 VEKLTELEAAAELERLARAIAHHDELYHAKDSPEISDAAYDALKRRNEAIEAHFPALVRD 65
Query: 111 DHPWNTVG 118
D P VG
Sbjct: 66 DSPSRRVG 73
>gi|256255361|ref|ZP_05460897.1| NAD-dependent DNA ligase LigA [Brucella ceti B1/94]
gi|261222562|ref|ZP_05936843.1| NAD-dependent DNA ligase LigA [Brucella ceti B1/94]
gi|260921146|gb|EEX87799.1| NAD-dependent DNA ligase LigA [Brucella ceti B1/94]
Length = 719
Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 36/68 (52%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V L++ EA E+E L + HH + Y+ D P +D YD + R +A++ FP L +
Sbjct: 6 VEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALVRD 65
Query: 111 DHPWNTVG 118
D P VG
Sbjct: 66 DSPSRRVG 73
>gi|86749131|ref|YP_485627.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris HaA2]
gi|123004307|sp|Q2IYJ4|DNLJ_RHOP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|86572159|gb|ABD06716.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris HaA2]
Length = 714
Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 37/71 (52%)
Query: 48 AKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
A + +L+K +A +E L H YY+ D P +D YD + RL+A++ +FPEL
Sbjct: 8 APDIATLTKAKAKVEAMRLRLEIERHNSAYYQHDAPTVSDAEYDALRRRLEAIEAKFPEL 67
Query: 108 FDEDHPWNTVG 118
P TVG
Sbjct: 68 VSASSPTQTVG 78
>gi|294852747|ref|ZP_06793420.1| DNA ligase [Brucella sp. NVSL 07-0026]
gi|294821336|gb|EFG38335.1| DNA ligase [Brucella sp. NVSL 07-0026]
Length = 719
Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 36/68 (52%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V L++ EA E+E L + HH + Y+ D P +D YD + R +A++ FP L +
Sbjct: 6 VEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALVRD 65
Query: 111 DHPWNTVG 118
D P VG
Sbjct: 66 DSPSRRVG 73
>gi|225852902|ref|YP_002733135.1| NAD-dependent DNA ligase LigA [Brucella melitensis ATCC 23457]
gi|256263616|ref|ZP_05466148.1| DNA ligase [Brucella melitensis bv. 2 str. 63/9]
gi|254781270|sp|C0RE59|DNLJ_BRUMB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|225641267|gb|ACO01181.1| DNA ligase, NAD-dependent [Brucella melitensis ATCC 23457]
gi|263093668|gb|EEZ17673.1| DNA ligase [Brucella melitensis bv. 2 str. 63/9]
gi|326409444|gb|ADZ66509.1| NAD-dependent DNA ligase LigA [Brucella melitensis M28]
gi|326539150|gb|ADZ87365.1| DNA ligase, NAD-dependent [Brucella melitensis M5-90]
Length = 719
Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 36/68 (52%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V L++ EA E+E L + HH + Y+ D P +D YD + R +A++ FP L +
Sbjct: 6 VEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALVRD 65
Query: 111 DHPWNTVG 118
D P VG
Sbjct: 66 DSPSRRVG 73
>gi|256061478|ref|ZP_05451622.1| NAD-dependent DNA ligase LigA [Brucella neotomae 5K33]
gi|261325484|ref|ZP_05964681.1| NAD-dependent DNA ligase LigA [Brucella neotomae 5K33]
gi|261301464|gb|EEY04961.1| NAD-dependent DNA ligase LigA [Brucella neotomae 5K33]
Length = 719
Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 36/68 (52%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V L++ EA E+E L + HH + Y+ D P +D YD + R +A++ FP L +
Sbjct: 6 VEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALVRD 65
Query: 111 DHPWNTVG 118
D P VG
Sbjct: 66 DSPSRRVG 73
>gi|254702142|ref|ZP_05163970.1| NAD-dependent DNA ligase LigA [Brucella suis bv. 5 str. 513]
gi|261752711|ref|ZP_05996420.1| NAD-dependent DNA ligase LigA [Brucella suis bv. 5 str. 513]
gi|261742464|gb|EEY30390.1| NAD-dependent DNA ligase LigA [Brucella suis bv. 5 str. 513]
Length = 719
Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 36/68 (52%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V L++ EA E+E L + HH + Y+ D P +D YD + R +A++ FP L +
Sbjct: 6 VEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALVRD 65
Query: 111 DHPWNTVG 118
D P VG
Sbjct: 66 DSPSRRVG 73
>gi|148560656|ref|YP_001259312.1| NAD-dependent DNA ligase LigA [Brucella ovis ATCC 25840]
gi|166215401|sp|A5VRG5|DNLJ_BRUO2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|148371913|gb|ABQ61892.1| DNA ligase, NAD-dependent [Brucella ovis ATCC 25840]
Length = 719
Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 36/68 (52%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V L++ EA E+E L + HH + Y+ D P +D YD + R +A++ FP L +
Sbjct: 6 VEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALVRD 65
Query: 111 DHPWNTVG 118
D P VG
Sbjct: 66 DSPSRRVG 73
>gi|17986872|ref|NP_539506.1| NAD-dependent DNA ligase LigA [Brucella melitensis bv. 1 str. 16M]
gi|256045051|ref|ZP_05447952.1| NAD-dependent DNA ligase LigA [Brucella melitensis bv. 1 str.
Rev.1]
gi|260565350|ref|ZP_05835834.1| DNA ligase [Brucella melitensis bv. 1 str. 16M]
gi|265991477|ref|ZP_06104034.1| NAD-dependent DNA ligase LigA [Brucella melitensis bv. 1 str.
Rev.1]
gi|81852173|sp|Q8YI56|DNLJ_BRUME RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|17982511|gb|AAL51770.1| nad-dependent DNA ligase [Brucella melitensis bv. 1 str. 16M]
gi|260151418|gb|EEW86512.1| DNA ligase [Brucella melitensis bv. 1 str. 16M]
gi|263002261|gb|EEZ14836.1| NAD-dependent DNA ligase LigA [Brucella melitensis bv. 1 str.
Rev.1]
Length = 719
Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 36/68 (52%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V L++ EA E+E L + HH + Y+ D P +D YD + R +A++ FP L +
Sbjct: 6 VEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALVRD 65
Query: 111 DHPWNTVG 118
D P VG
Sbjct: 66 DSPSRRVG 73
>gi|23502291|ref|NP_698418.1| NAD-dependent DNA ligase LigA [Brucella suis 1330]
gi|62290313|ref|YP_222106.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 1 str. 9-941]
gi|82700237|ref|YP_414811.1| NAD-dependent DNA ligase LigA [Brucella melitensis biovar Abortus
2308]
gi|161619368|ref|YP_001593255.1| NAD-dependent DNA ligase LigA [Brucella canis ATCC 23365]
gi|163843675|ref|YP_001628079.1| NAD-dependent DNA ligase LigA [Brucella suis ATCC 23445]
gi|189024547|ref|YP_001935315.1| NAD-dependent DNA ligase LigA [Brucella abortus S19]
gi|225627871|ref|ZP_03785908.1| DNA ligase, NAD-dependent [Brucella ceti str. Cudo]
gi|254689615|ref|ZP_05152869.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 6 str. 870]
gi|254694105|ref|ZP_05155933.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 3 str. Tulya]
gi|254697757|ref|ZP_05159585.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 2 str. 86/8/59]
gi|254704678|ref|ZP_05166506.1| NAD-dependent DNA ligase LigA [Brucella suis bv. 3 str. 686]
gi|254708093|ref|ZP_05169921.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis M163/99/10]
gi|254710462|ref|ZP_05172273.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis B2/94]
gi|254730646|ref|ZP_05189224.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 4 str. 292]
gi|256031956|ref|ZP_05445570.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis M292/94/1]
gi|256113974|ref|ZP_05454757.1| NAD-dependent DNA ligase LigA [Brucella melitensis bv. 3 str.
Ether]
gi|256160155|ref|ZP_05457849.1| NAD-dependent DNA ligase LigA [Brucella ceti M490/95/1]
gi|256257864|ref|ZP_05463400.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 9 str. C68]
gi|256369836|ref|YP_003107347.1| DNA ligase [Brucella microti CCM 4915]
gi|260169093|ref|ZP_05755904.1| NAD-dependent DNA ligase LigA [Brucella sp. F5/99]
gi|260546856|ref|ZP_05822595.1| DNA ligase [Brucella abortus NCTC 8038]
gi|260566074|ref|ZP_05836544.1| DNA ligase [Brucella suis bv. 4 str. 40]
gi|260755142|ref|ZP_05867490.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 6 str. 870]
gi|260758361|ref|ZP_05870709.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 4 str. 292]
gi|260762187|ref|ZP_05874530.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 2 str. 86/8/59]
gi|260884154|ref|ZP_05895768.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 9 str. C68]
gi|261214403|ref|ZP_05928684.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 3 str. Tulya]
gi|261315595|ref|ZP_05954792.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis M163/99/10]
gi|261318033|ref|ZP_05957230.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis B2/94]
gi|261755371|ref|ZP_05999080.1| NAD-dependent DNA ligase LigA [Brucella suis bv. 3 str. 686]
gi|261758598|ref|ZP_06002307.1| DNA ligase [Brucella sp. F5/99]
gi|265989064|ref|ZP_06101621.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis M292/94/1]
gi|265995315|ref|ZP_06107872.1| NAD-dependent DNA ligase LigA [Brucella melitensis bv. 3 str.
Ether]
gi|265998527|ref|ZP_06111084.1| NAD-dependent DNA ligase LigA [Brucella ceti M490/95/1]
gi|297248700|ref|ZP_06932418.1| DNA ligase, NAD-dependent [Brucella abortus bv. 5 str. B3196]
gi|75496544|sp|Q57C89|DNLJ_BRUAB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|81752355|sp|Q8FZQ3|DNLJ_BRUSU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|123768412|sp|Q2YLZ6|DNLJ_BRUA2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|190359236|sp|A9M679|DNLJ_BRUC2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|190359237|sp|B0CHK8|DNLJ_BRUSI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254781269|sp|B2S6P4|DNLJ_BRUA1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|23348266|gb|AAN30333.1| DNA ligase, NAD-dependent [Brucella suis 1330]
gi|62196445|gb|AAX74745.1| LigA, DNA ligase, NAD-dependent [Brucella abortus bv. 1 str. 9-941]
gi|82616338|emb|CAJ11395.1| BRCT domain:NAD-dependent DNA ligase:ATP/GTP-binding site motif A
(P-loop):Zn-finger in NAD-dependent DNA ligase, C4
type:NAD [Brucella melitensis biovar Abortus 2308]
gi|161336179|gb|ABX62484.1| DNA ligase, NAD-dependent [Brucella canis ATCC 23365]
gi|163674398|gb|ABY38509.1| DNA ligase, NAD-dependent [Brucella suis ATCC 23445]
gi|189020119|gb|ACD72841.1| DNA ligase [Brucella abortus S19]
gi|225617876|gb|EEH14921.1| DNA ligase, NAD-dependent [Brucella ceti str. Cudo]
gi|255999999|gb|ACU48398.1| DNA ligase [Brucella microti CCM 4915]
gi|260095906|gb|EEW79783.1| DNA ligase [Brucella abortus NCTC 8038]
gi|260155592|gb|EEW90672.1| DNA ligase [Brucella suis bv. 4 str. 40]
gi|260668679|gb|EEX55619.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 4 str. 292]
gi|260672619|gb|EEX59440.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 2 str. 86/8/59]
gi|260675250|gb|EEX62071.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 6 str. 870]
gi|260873682|gb|EEX80751.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 9 str. C68]
gi|260916010|gb|EEX82871.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 3 str. Tulya]
gi|261297256|gb|EEY00753.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis B2/94]
gi|261304621|gb|EEY08118.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis M163/99/10]
gi|261738582|gb|EEY26578.1| DNA ligase [Brucella sp. F5/99]
gi|261745124|gb|EEY33050.1| NAD-dependent DNA ligase LigA [Brucella suis bv. 3 str. 686]
gi|262553151|gb|EEZ08985.1| NAD-dependent DNA ligase LigA [Brucella ceti M490/95/1]
gi|262766428|gb|EEZ12217.1| NAD-dependent DNA ligase LigA [Brucella melitensis bv. 3 str.
Ether]
gi|264661261|gb|EEZ31522.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis M292/94/1]
gi|297175869|gb|EFH35216.1| DNA ligase, NAD-dependent [Brucella abortus bv. 5 str. B3196]
Length = 719
Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 36/68 (52%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V L++ EA E+E L + HH + Y+ D P +D YD + R +A++ FP L +
Sbjct: 6 VEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALVRD 65
Query: 111 DHPWNTVG 118
D P VG
Sbjct: 66 DSPSRRVG 73
>gi|27381702|ref|NP_773231.1| DNA ligase [Bradyrhizobium japonicum USDA 110]
gi|81735382|sp|Q89FV8|DNLJ_BRAJA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|27354871|dbj|BAC51856.1| DNA ligase [Bradyrhizobium japonicum USDA 110]
Length = 716
Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 49 KKVTSLSKGEAMIEVEYLVKIALH---HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFP 105
+ V L+K +A +E L+++AL H K YY+ D P TD YD + +R +A++++FP
Sbjct: 12 RDVAELTKAQAKVE---LMRLALELEGHDKRYYQDDAPTVTDAEYDALRQRFNAIEKRFP 68
Query: 106 ELFDEDHPWNTVG 118
E + P VG
Sbjct: 69 EFVSAESPSQKVG 81
>gi|254714455|ref|ZP_05176266.1| NAD-dependent DNA ligase LigA [Brucella ceti M644/93/1]
gi|254717353|ref|ZP_05179164.1| NAD-dependent DNA ligase LigA [Brucella ceti M13/05/1]
gi|261219183|ref|ZP_05933464.1| NAD-dependent DNA ligase LigA [Brucella ceti M13/05/1]
gi|261322244|ref|ZP_05961441.1| NAD-dependent DNA ligase LigA [Brucella ceti M644/93/1]
gi|260924272|gb|EEX90840.1| NAD-dependent DNA ligase LigA [Brucella ceti M13/05/1]
gi|261294934|gb|EEX98430.1| NAD-dependent DNA ligase LigA [Brucella ceti M644/93/1]
Length = 719
Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 36/68 (52%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V L++ EA E+E L + HH + Y+ D P +D YD + R +A++ FP L +
Sbjct: 6 VEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALVRD 65
Query: 111 DHPWNTVG 118
D P VG
Sbjct: 66 DSPSRRVG 73
>gi|119717662|ref|YP_924627.1| DNA ligase, NAD-dependent [Nocardioides sp. JS614]
gi|166216220|sp|A1SMA5|DNLJ_NOCSJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|119538323|gb|ABL82940.1| DNA ligase, NAD-dependent [Nocardioides sp. JS614]
Length = 752
Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 62 EVEYLVKIALHHQKW-YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E L+ + +W YY LD+P D +DR RL+AL+E+FPEL D P TVG
Sbjct: 65 EEHRLIAEEIEEARWRYYVLDSPTIDDADFDRRMRRLEALEEEFPELRTPDSPTQTVG 122
>gi|260892973|ref|YP_003239070.1| DNA ligase, NAD-dependent [Ammonifex degensii KC4]
gi|260865114|gb|ACX52220.1| DNA ligase, NAD-dependent [Ammonifex degensii KC4]
Length = 672
Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 36/65 (55%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
LSK EA +E L + +H YY LD+P+ +D YDR+ L AL+E FPE + P
Sbjct: 5 LSKEEAKRRIEELRREIAYHDYRYYVLDSPVISDAEYDRLVLELMALEEAFPEFITPNSP 64
Query: 114 WNTVG 118
VG
Sbjct: 65 TQRVG 69
>gi|237815820|ref|ZP_04594817.1| DNA ligase, NAD-dependent [Brucella abortus str. 2308 A]
gi|237789118|gb|EEP63329.1| DNA ligase, NAD-dependent [Brucella abortus str. 2308 A]
Length = 725
Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 36/68 (52%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V L++ EA E+E L + HH + Y+ D P +D YD + R +A++ FP L +
Sbjct: 12 VEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALVRD 71
Query: 111 DHPWNTVG 118
D P VG
Sbjct: 72 DSPSRRVG 79
>gi|75675255|ref|YP_317676.1| NAD-dependent DNA ligase [Nitrobacter winogradskyi Nb-255]
gi|123773282|sp|Q3STR7|DNLJ_NITWN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|74420125|gb|ABA04324.1| NAD-dependent DNA ligase [Nitrobacter winogradskyi Nb-255]
Length = 716
Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 38/68 (55%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V SL++ +A +E + L H + YY+ D P +D YD + RL+A++ +FP+L
Sbjct: 11 VDSLTRSQARVEHKRLALEIETHNERYYQQDAPTVSDATYDALQRRLEAIEARFPDLVTA 70
Query: 111 DHPWNTVG 118
P TVG
Sbjct: 71 SSPTQTVG 78
>gi|85708859|ref|ZP_01039925.1| DNA ligase [Erythrobacter sp. NAP1]
gi|85690393|gb|EAQ30396.1| DNA ligase [Erythrobacter sp. NAP1]
Length = 698
Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 41/78 (52%)
Query: 42 ESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQ 101
ES A V+ +S+ +A E+ L K HH + Y+ D+P +D YD + R L+
Sbjct: 5 ESAEVSANPVSQMSEADAANELMRLAKQIAHHDRLYHADDDPEISDQEYDALVRRNRELE 64
Query: 102 EQFPELFDEDHPWNTVGY 119
E FP+L ED P VG+
Sbjct: 65 EAFPQLVREDSPSKRVGH 82
>gi|13471538|ref|NP_103104.1| DNA ligase [Mesorhizobium loti MAFF303099]
gi|75543387|sp|Q98KC4|DNLJ_RHILO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|14022280|dbj|BAB48890.1| DNA ligase [Mesorhizobium loti MAFF303099]
Length = 734
Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 38/70 (54%)
Query: 49 KKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF 108
K V SLS+ EA E++ L + H + Y+ D P TD YD + R A++E+FP L
Sbjct: 4 KPVDSLSESEAEAELKRLAEEIAGHDRRYHAEDAPTITDAEYDALRRRNLAIEERFPGLV 63
Query: 109 DEDHPWNTVG 118
ED P VG
Sbjct: 64 REDSPSRRVG 73
>gi|260462100|ref|ZP_05810344.1| DNA ligase, NAD-dependent [Mesorhizobium opportunistum WSM2075]
gi|259031960|gb|EEW33227.1| DNA ligase, NAD-dependent [Mesorhizobium opportunistum WSM2075]
Length = 734
Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 38/70 (54%)
Query: 49 KKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF 108
K V SLS+ EA E++ L + H + Y+ D P TD YD + R A++E+FP L
Sbjct: 4 KPVDSLSESEAEAELQRLAEEIAEHDRRYHTEDAPTITDAEYDALRRRNLAIEERFPGLV 63
Query: 109 DEDHPWNTVG 118
ED P VG
Sbjct: 64 REDSPSLRVG 73
>gi|90424785|ref|YP_533155.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris BisB18]
gi|123275077|sp|Q211V0|DNLJ_RHOPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|90106799|gb|ABD88836.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris BisB18]
Length = 795
Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 37/66 (56%)
Query: 53 SLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDH 112
+LSK +A +E++ L H YY+ D P +D YD + R++A++ +FPEL D
Sbjct: 14 TLSKAKAKVELKRLSLEIERHNNAYYQDDAPKISDAEYDALRHRVEAIEAKFPELVSSDS 73
Query: 113 PWNTVG 118
P VG
Sbjct: 74 PTQKVG 79
>gi|227822641|ref|YP_002826613.1| NAD-dependent DNA ligase LigA [Sinorhizobium fredii NGR234]
gi|254781400|sp|C3MEL9|DNLJ_RHISN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|227341642|gb|ACP25860.1| DNA ligase [Sinorhizobium fredii NGR234]
Length = 717
Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 38/74 (51%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
L++ K V L++ EA E+ +LV H Y+ D P +D YD + R D ++E F
Sbjct: 2 LNEKKPVEQLTETEAAEELAFLVTELARHDALYHGQDAPEISDADYDALKRRNDLIEELF 61
Query: 105 PELFDEDHPWNTVG 118
P L ED P +G
Sbjct: 62 PALIREDSPSRKIG 75
>gi|326570074|gb|EGE20120.1| NAD-dependent DNA ligase [Moraxella catarrhalis BC7]
Length = 691
Score = 50.1 bits (118), Expect = 9e-05, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 38/73 (52%)
Query: 46 DKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFP 105
+ +K S + + + ++ L+K+ H YY +D P +DG YD + L L++Q P
Sbjct: 10 NTSKNNPSKANDQIIAQMRALIKLLKRHNHAYYVMDAPTISDGEYDGLRRTLMMLEQQHP 69
Query: 106 ELFDEDHPWNTVG 118
L D P NTVG
Sbjct: 70 NLIQPDSPINTVG 82
>gi|91977847|ref|YP_570506.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris BisB5]
gi|123735250|sp|Q133Y4|DNLJ_RHOPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|91684303|gb|ABE40605.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris BisB5]
Length = 714
Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 37/71 (52%)
Query: 48 AKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
A + L+K +A +E+ L H K YY+ D P D YD + RL+A++ +FPEL
Sbjct: 9 APDIDKLTKPKAKVELMRLRLAIEGHDKAYYQDDAPKIPDADYDALRRRLEAIEAKFPEL 68
Query: 108 FDEDHPWNTVG 118
P TVG
Sbjct: 69 LSASSPSQTVG 79
>gi|53803401|ref|YP_114852.1| DNA ligase, NAD-dependent [Methylococcus capsulatus str. Bath]
gi|81681278|sp|Q604U8|DNLJ_METCA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|53757162|gb|AAU91453.1| DNA ligase, NAD-dependent [Methylococcus capsulatus str. Bath]
Length = 673
Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 28/46 (60%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YYRLD+PL TD YDR+ L A++ ++PEL D P VG
Sbjct: 21 HNVRYYRLDDPLITDAEYDRLMAELLAIEARYPELVTPDSPTQRVG 66
>gi|320354711|ref|YP_004196050.1| NAD-dependent DNA ligase [Desulfobulbus propionicus DSM 2032]
gi|320123213|gb|ADW18759.1| DNA ligase, NAD-dependent [Desulfobulbus propionicus DSM 2032]
Length = 670
Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 36/65 (55%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ KG A +E L H YY LD+P+ +DG YD + L AL++++PEL D P
Sbjct: 1 MDKGRAADRLEELRGQLRFHAHRYYVLDDPIISDGEYDALFRELLALEQEYPELVTADSP 60
Query: 114 WNTVG 118
+ VG
Sbjct: 61 SHRVG 65
>gi|184157078|ref|YP_001845417.1| NAD-dependent DNA ligase [Acinetobacter baumannii ACICU]
gi|254778156|sp|B2HUJ5|DNLJ_ACIBC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|183208672|gb|ACC56070.1| NAD-dependent DNA ligase [Acinetobacter baumannii ACICU]
Length = 673
Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 60 MIE-VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
MIE + L+++ H YY +D P +D YD + +L AL+EQ+PEL D P VG
Sbjct: 1 MIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQADSPTTKVG 60
>gi|153009084|ref|YP_001370299.1| NAD-dependent DNA ligase LigA [Ochrobactrum anthropi ATCC 49188]
gi|166216221|sp|A6WZR6|DNLJ_OCHA4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|151560972|gb|ABS14470.1| DNA ligase, NAD-dependent [Ochrobactrum anthropi ATCC 49188]
Length = 721
Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 37/68 (54%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V L++ EA+ E+E L + HH + Y+ D P +D YD + R DA++ +FP L
Sbjct: 6 VEKLTEPEAVSELERLAREIAHHDELYHANDRPEISDAEYDALKRRNDAIEARFPHLVRT 65
Query: 111 DHPWNTVG 118
D P VG
Sbjct: 66 DSPSLRVG 73
>gi|261884935|ref|ZP_06008974.1| NAD-dependent DNA ligase LigA [Campylobacter fetus subsp.
venerealis str. Azul-94]
Length = 195
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%)
Query: 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
V L++ EA E+E L + HH + Y+ D P +D YD + R +A++ FP L
Sbjct: 5 SVEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALVR 64
Query: 110 EDHPWNTVG 118
+D P VG
Sbjct: 65 DDSPSRRVG 73
>gi|154252874|ref|YP_001413698.1| DNA ligase, NAD-dependent [Parvibaculum lavamentivorans DS-1]
gi|190359267|sp|A7HVV8|DNLJ_PARL1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|154156824|gb|ABS64041.1| DNA ligase, NAD-dependent [Parvibaculum lavamentivorans DS-1]
Length = 710
Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 38/70 (54%)
Query: 49 KKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF 108
K V L+ EA E+E L H K YY+ D P +D YD + R +A++ ++PEL
Sbjct: 15 KDVDHLTLEEAPEELERLAAEIEKHDKLYYQKDAPRISDAEYDTLRRRNEAIEARYPELV 74
Query: 109 DEDHPWNTVG 118
ED P + VG
Sbjct: 75 REDSPSHRVG 84
>gi|293391716|ref|ZP_06636050.1| DNA ligase, NAD-dependent [Aggregatibacter actinomycetemcomitans
D7S-1]
gi|290952250|gb|EFE02369.1| DNA ligase, NAD-dependent [Aggregatibacter actinomycetemcomitans
D7S-1]
Length = 671
Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 33/57 (57%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L K HH+ Y+ LD+P D YDR+ +L AL++Q PEL D P VG
Sbjct: 8 QIDDLRKTLRHHEYQYHVLDDPQIPDSEYDRLFHQLKALEQQHPELVTADSPTQRVG 64
>gi|261868202|ref|YP_003256124.1| NAD-dependent DNA ligase LigA [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|261413534|gb|ACX82905.1| DNA ligase, NAD-dependent [Aggregatibacter actinomycetemcomitans
D11S-1]
Length = 670
Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 33/57 (57%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L K HH+ Y+ LD+P D YDR+ +L AL++Q PEL D P VG
Sbjct: 8 QIDDLRKTLRHHEYQYHVLDDPQIPDSEYDRLFHQLKALEQQHPELVTADSPTQRVG 64
>gi|332852097|ref|ZP_08433924.1| DNA ligase [Acinetobacter baumannii 6013150]
gi|332867495|ref|ZP_08437648.1| DNA ligase [Acinetobacter baumannii 6013113]
gi|332872654|ref|ZP_08440622.1| DNA ligase [Acinetobacter baumannii 6014059]
gi|332729469|gb|EGJ60808.1| DNA ligase [Acinetobacter baumannii 6013150]
gi|332733912|gb|EGJ65057.1| DNA ligase [Acinetobacter baumannii 6013113]
gi|332739183|gb|EGJ70042.1| DNA ligase [Acinetobacter baumannii 6014059]
Length = 683
Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 32/57 (56%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L+++ H YY +D P +D YD + +L AL+EQ+PEL D P VG
Sbjct: 14 QMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQADSPTTKVG 70
>gi|323702801|ref|ZP_08114460.1| DNA ligase, NAD-dependent [Desulfotomaculum nigrificans DSM 574]
gi|323532189|gb|EGB22069.1| DNA ligase, NAD-dependent [Desulfotomaculum nigrificans DSM 574]
Length = 669
Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 32/61 (52%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E VE L + +H YY LDNP TDG YD++ + L L+ +PEL D P V
Sbjct: 7 EIKARVEELRREINYHNHQYYVLDNPTITDGQYDQLVQELLRLENAYPELVSPDSPTQRV 66
Query: 118 G 118
G
Sbjct: 67 G 67
>gi|260550982|ref|ZP_05825187.1| DNA ligase [Acinetobacter sp. RUH2624]
gi|260405930|gb|EEW99417.1| DNA ligase [Acinetobacter sp. RUH2624]
Length = 691
Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 32/57 (56%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L+++ H YY +D P +D YD + +L AL+EQ+PEL D P VG
Sbjct: 22 QMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQTDSPTTKVG 78
>gi|239501241|ref|ZP_04660551.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB900]
Length = 678
Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 32/57 (56%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L+++ H YY +D P +D YD + +L AL+EQ+PEL D P VG
Sbjct: 9 QMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQADSPTTKVG 65
>gi|213156587|ref|YP_002318248.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB0057]
gi|215484469|ref|YP_002326704.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB307-0294]
gi|301347734|ref|ZP_07228475.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB056]
gi|301512482|ref|ZP_07237719.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB058]
gi|301594386|ref|ZP_07239394.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB059]
gi|221222446|sp|A3M2U3|DNLJ_ACIBT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254778154|sp|B7GZ71|DNLJ_ACIB3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254778155|sp|B7I790|DNLJ_ACIB5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254781253|sp|B0V8E4|DNLJ_ACIBY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|193076578|gb|ABO11237.2| DNA ligase [Acinetobacter baumannii ATCC 17978]
gi|213055747|gb|ACJ40649.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB0057]
gi|213986610|gb|ACJ56909.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB307-0294]
Length = 678
Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 32/57 (56%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L+++ H YY +D P +D YD + +L AL+EQ+PEL D P VG
Sbjct: 9 QMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQADSPTTKVG 65
>gi|169797009|ref|YP_001714802.1| DNA ligase [Acinetobacter baumannii AYE]
gi|169149936|emb|CAM87830.1| DNA ligase [Acinetobacter baumannii AYE]
Length = 691
Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 32/57 (56%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L+++ H YY +D P +D YD + +L AL+EQ+PEL D P VG
Sbjct: 22 QMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQADSPTTKVG 78
>gi|37525354|ref|NP_928698.1| NAD-dependent DNA ligase LigA [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|81416713|sp|Q7MBH2|DNLJ_PHOLL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|36784781|emb|CAE13691.1| DNA ligase (polydeoxyribonucleotide synthase [NAD+]) [Photorhabdus
luminescens subsp. laumondii TTO1]
Length = 672
Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 31/57 (54%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++E L HH+ Y+ +D P D YDR+ + L L+EQ+PEL D P +G
Sbjct: 7 QIEKLRTTLRHHEYLYHVMDAPEIPDAEYDRLMQELQDLEEQYPELITSDSPTQRIG 63
>gi|294635487|ref|ZP_06713972.1| DNA ligase, NAD-dependent [Edwardsiella tarda ATCC 23685]
gi|291091145|gb|EFE23706.1| DNA ligase, NAD-dependent [Edwardsiella tarda ATCC 23685]
Length = 675
Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 31/57 (54%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++E L HH+ YY LD P TD YDR+ +L AL+ +P+L D P VG
Sbjct: 8 QLEQLRAALRHHEYQYYVLDEPQVTDAEYDRLMMQLKALESDYPQLVTADSPSQRVG 64
>gi|227543584|ref|ZP_03973633.1| DNA ligase, NAD-dependent [Lactobacillus reuteri CF48-3A]
gi|300909387|ref|ZP_07126848.1| NAD-dependent DNA ligase LigA [Lactobacillus reuteri SD2112]
gi|227186424|gb|EEI66495.1| DNA ligase, NAD-dependent [Lactobacillus reuteri CF48-3A]
gi|300893252|gb|EFK86611.1| NAD-dependent DNA ligase LigA [Lactobacillus reuteri SD2112]
Length = 680
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 36/72 (50%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
K V L+ EA E++ L K YY DNP D +YDR +RL L+EQFP+
Sbjct: 4 KQTPVKELTLQEAQDEIKPLRAKLTEWGKEYYEQDNPTVEDHVYDRAYQRLVQLEEQFPQ 63
Query: 107 LFDEDHPWNTVG 118
L D P VG
Sbjct: 64 LLSADSPTQRVG 75
>gi|296132371|ref|YP_003639618.1| DNA ligase, NAD-dependent [Thermincola sp. JR]
gi|296030949|gb|ADG81717.1| DNA ligase, NAD-dependent [Thermincola potens JR]
Length = 665
Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 32/65 (49%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K A + L K H +YY LD P TD YDR+ L L++Q+P+L D P
Sbjct: 1 MDKAAAAKRINELRKQIEEHNYYYYVLDRPRITDAEYDRLMRELTELEQQYPDLVTPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|296126514|ref|YP_003633766.1| DNA ligase, NAD-dependent [Brachyspira murdochii DSM 12563]
gi|296018330|gb|ADG71567.1| DNA ligase, NAD-dependent [Brachyspira murdochii DSM 12563]
Length = 663
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++K EA +++ L + +H K YY DNP D YD++ L+ L+ +FPEL +D P
Sbjct: 1 MNKEEAKQKIKQLTETINYHNKLYYTDDNPEIEDYEYDKLFRELENLEREFPELKKDDSP 60
Query: 114 WNTVG 118
N VG
Sbjct: 61 TNKVG 65
>gi|262373317|ref|ZP_06066596.1| DNA ligase, NAD-dependent [Acinetobacter junii SH205]
gi|262313342|gb|EEY94427.1| DNA ligase, NAD-dependent [Acinetobacter junii SH205]
Length = 677
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L+++ H YY +D P TD YD + +L AL++Q+PE D P N VG
Sbjct: 9 QMRQLIQLIAKHNHAYYVMDQPTITDSEYDHLFHQLKALEQQYPEFMQADTPTNKVG 65
>gi|149184723|ref|ZP_01863041.1| DNA ligase [Erythrobacter sp. SD-21]
gi|148832043|gb|EDL50476.1| DNA ligase [Erythrobacter sp. SD-21]
Length = 690
Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 36/72 (50%)
Query: 48 AKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
A K +++ EA E+ L + H K Y+ D P TD +D + R L+EQFP L
Sbjct: 3 ASKPVDMTEAEAANELMRLARAIAKHNKLYHAEDAPEITDQEFDALVRRNAELEEQFPHL 62
Query: 108 FDEDHPWNTVGY 119
ED P VG+
Sbjct: 63 VREDSPSKVVGH 74
>gi|326574755|gb|EGE24691.1| NAD-dependent DNA ligase [Moraxella catarrhalis 101P30B1]
Length = 691
Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 37/73 (50%)
Query: 46 DKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFP 105
D +K S + + + ++ L+K+ H YY +D P +D YD + L L++Q P
Sbjct: 10 DTSKNNPSKANDQIIAQMRALIKLLKRHNHAYYVMDAPTISDDEYDGLRRTLMMLEQQHP 69
Query: 106 ELFDEDHPWNTVG 118
L D P NTVG
Sbjct: 70 NLIQPDSPINTVG 82
>gi|326572929|gb|EGE22914.1| NAD-dependent DNA ligase [Moraxella catarrhalis CO72]
Length = 691
Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 37/73 (50%)
Query: 46 DKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFP 105
D +K S + + + ++ L+K+ H YY +D P +D YD + L L++Q P
Sbjct: 10 DTSKNNPSKANDQIIAQMRALIKLLKRHNHAYYVMDAPTISDDEYDGLRRTLMMLEQQHP 69
Query: 106 ELFDEDHPWNTVG 118
L D P NTVG
Sbjct: 70 NLIQPDSPINTVG 82
>gi|326569993|gb|EGE20040.1| NAD-dependent DNA ligase [Moraxella catarrhalis BC1]
Length = 691
Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 37/73 (50%)
Query: 46 DKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFP 105
D +K S + + + ++ L+K+ H YY +D P +D YD + L L++Q P
Sbjct: 10 DTSKNNPSKANDQIIAQMRALIKLLKRHNHAYYVMDAPTISDDEYDGLRRTLMMLEQQHP 69
Query: 106 ELFDEDHPWNTVG 118
L D P NTVG
Sbjct: 70 NLIQPDSPINTVG 82
>gi|326564268|gb|EGE14498.1| NAD-dependent DNA ligase [Moraxella catarrhalis 103P14B1]
Length = 691
Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 37/73 (50%)
Query: 46 DKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFP 105
D +K S + + + ++ L+K+ H YY +D P +D YD + L L++Q P
Sbjct: 10 DTSKNNPSKANDQIIAQMRALIKLLKRHNHAYYVMDAPTISDDEYDGLRRTLMMLEQQHP 69
Query: 106 ELFDEDHPWNTVG 118
L D P NTVG
Sbjct: 70 NLIQPDSPINTVG 82
>gi|296113927|ref|YP_003627865.1| NAD-dependent DNA ligase [Moraxella catarrhalis RH4]
gi|295921621|gb|ADG61972.1| NAD-dependent DNA ligase [Moraxella catarrhalis RH4]
Length = 691
Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 37/73 (50%)
Query: 46 DKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFP 105
D +K S + + + ++ L+K+ H YY +D P +D YD + L L++Q P
Sbjct: 10 DTSKNNPSKANDQIIAQMRALIKLLKRHNHAYYVMDAPTISDDEYDGLRRTLMMLEQQHP 69
Query: 106 ELFDEDHPWNTVG 118
L D P NTVG
Sbjct: 70 NLIQPDSPINTVG 82
>gi|194466912|ref|ZP_03072899.1| DNA ligase, NAD-dependent [Lactobacillus reuteri 100-23]
gi|194453948|gb|EDX42845.1| DNA ligase, NAD-dependent [Lactobacillus reuteri 100-23]
Length = 680
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 37/73 (50%)
Query: 46 DKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFP 105
+K V L+ EA E++ L K YY DNP D +YDR +RL L+EQFP
Sbjct: 3 EKQTPVKELTLQEAQDEIKPLRAKLTKWGKEYYEQDNPTVEDHVYDRAYQRLVQLEEQFP 62
Query: 106 ELFDEDHPWNTVG 118
+L D P VG
Sbjct: 63 QLVSADSPTQRVG 75
>gi|148544657|ref|YP_001272027.1| DNA ligase, NAD-dependent [Lactobacillus reuteri DSM 20016]
gi|184154010|ref|YP_001842351.1| NAD-dependent DNA ligase [Lactobacillus reuteri JCM 1112]
gi|227363780|ref|ZP_03847887.1| DNA ligase, NAD-dependent [Lactobacillus reuteri MM2-3]
gi|325682991|ref|ZP_08162507.1| NAD-dependent DNA ligase LigA [Lactobacillus reuteri MM4-1A]
gi|209572830|sp|A5VLG6|DNLJ_LACRD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254781354|sp|B2G8T9|DNLJ_LACRJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|148531691|gb|ABQ83690.1| DNA ligase, NAD-dependent [Lactobacillus reuteri DSM 20016]
gi|183225354|dbj|BAG25871.1| NAD-dependent DNA ligase [Lactobacillus reuteri JCM 1112]
gi|227071137|gb|EEI09453.1| DNA ligase, NAD-dependent [Lactobacillus reuteri MM2-3]
gi|324977341|gb|EGC14292.1| NAD-dependent DNA ligase LigA [Lactobacillus reuteri MM4-1A]
Length = 680
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 37/73 (50%)
Query: 46 DKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFP 105
+K V L+ EA E++ L K YY DNP D +YDR +RL L+EQFP
Sbjct: 3 EKQTPVKELTLQEAQDEIKPLRAKLTKWGKEYYEQDNPTVEDHVYDRAYQRLVQLEEQFP 62
Query: 106 ELFDEDHPWNTVG 118
+L D P VG
Sbjct: 63 QLVSADSPTQRVG 75
>gi|300870442|ref|YP_003785313.1| NAD-dependent DNA ligase [Brachyspira pilosicoli 95/1000]
gi|300688141|gb|ADK30812.1| NAD-dependent DNA ligase [Brachyspira pilosicoli 95/1000]
Length = 663
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 34/61 (55%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
EA ++E L +H K YY DNP D YD++ L+ L+ +FPEL +D P N V
Sbjct: 5 EARKKIEQLTATINYHNKLYYTDDNPEIEDYEYDKLFRELENLEREFPELKKDDSPTNKV 64
Query: 118 G 118
G
Sbjct: 65 G 65
>gi|126640855|ref|YP_001083839.1| DNA ligase [Acinetobacter baumannii ATCC 17978]
gi|322506977|gb|ADX02431.1| DNA ligase [Acinetobacter baumannii 1656-2]
gi|323516844|gb|ADX91225.1| DNA ligase, NAD-dependent [Acinetobacter baumannii TCDC-AB0715]
Length = 669
Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 30/53 (56%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L+++ H YY +D P +D YD + +L AL+EQ+PEL D P VG
Sbjct: 4 LIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQADSPTTKVG 56
>gi|225620892|ref|YP_002722150.1| NAD-dependent DNA ligase LigA [Brachyspira hyodysenteriae WA1]
gi|254781267|sp|C0QVE5|DNLJ_BRAHW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|225215712|gb|ACN84446.1| NAD-dependent DNA ligase LigA [Brachyspira hyodysenteriae WA1]
Length = 663
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 34/61 (55%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
EA +E L + +H K YY DNP D YD++ L+ L+ +FPEL +D P N V
Sbjct: 5 EAKQRIEQLTETINYHNKLYYTDDNPEIEDYEYDKLFRELENLEREFPELKKDDSPTNKV 64
Query: 118 G 118
G
Sbjct: 65 G 65
>gi|183981708|ref|YP_001849999.1| NAD-dependent DNA ligase LigA [Mycobacterium marinum M]
gi|254781377|sp|B2HIF0|DNLJ_MYCMM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|183175034|gb|ACC40144.1| DNA ligase [NAD dependent] LigA [Mycobacterium marinum M]
Length = 687
Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 34/61 (55%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E + + + L + HQ YY D P+ TD +D + RL+AL+EQ+PEL D P V
Sbjct: 4 EVLRQWQELAEQVREHQFRYYVRDAPVITDAEFDELLRRLEALEEQYPELRTPDSPTQLV 63
Query: 118 G 118
G
Sbjct: 64 G 64
>gi|82913524|ref|XP_728678.1| NAD-dependent DNA ligase [Plasmodium yoelii yoelii str. 17XNL]
gi|23485151|gb|EAA20243.1| DNA ligase, NAD-dependent, putative [Plasmodium yoelii yoelii]
Length = 354
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 28/46 (60%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YYRLD+PL TD YDR+ L A++ ++PEL D P VG
Sbjct: 201 HNVRYYRLDDPLITDAEYDRLMAELLAIEARYPELVTPDSPTQRVG 246
>gi|291569184|dbj|BAI91456.1| DNA ligase [Arthrospira platensis NIES-39]
Length = 683
Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 26/42 (61%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD+P+ DG+YDR+ L L+ Q+PEL D P VG
Sbjct: 30 YYVLDDPIMEDGVYDRLYRELQELENQYPELISPDSPTQRVG 71
>gi|257454409|ref|ZP_05619671.1| DNA ligase, NAD-dependent [Enhydrobacter aerosaccus SK60]
gi|257448175|gb|EEV23156.1| DNA ligase, NAD-dependent [Enhydrobacter aerosaccus SK60]
Length = 675
Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 27/47 (57%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY LDNPL D YD++ + L AL+ +P+L D P N VG
Sbjct: 21 QHNHAYYVLDNPLLEDSEYDQLRQELVALETAYPQLVQSDSPTNQVG 67
>gi|319899147|ref|YP_004159240.1| DNA ligase [Bartonella clarridgeiae 73]
gi|319403111|emb|CBI76669.1| DNA ligase [Bartonella clarridgeiae 73]
Length = 718
Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 46 DKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFP 105
D K +T+L EA E+E+L K H YYR D P +D YD + R A++ FP
Sbjct: 4 DVIKNLTAL---EAASELEWLAKEIARHDVLYYRDDQPEISDAEYDALRRRNGAIENLFP 60
Query: 106 ELFDEDHPWNTVG 118
EL D P +G
Sbjct: 61 ELIRADSPTFKIG 73
>gi|253988889|ref|YP_003040245.1| NAD-dependent DNA ligase LigA [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|253780339|emb|CAQ83500.1| DNA ligase [Photorhabdus asymbiotica]
Length = 672
Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 31/57 (54%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++E L K HH+ Y+ +D P +D YDR+ + L L+ Q PEL D P VG
Sbjct: 7 QIENLRKTLRHHEYLYHVMDAPEISDAEYDRLMQELKTLEGQHPELITSDSPTQRVG 63
>gi|116626792|ref|YP_828948.1| DNA ligase, NAD-dependent [Candidatus Solibacter usitatus
Ellin6076]
gi|122251346|sp|Q01NV7|DNLJ_SOLUE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|116229954|gb|ABJ88663.1| DNA ligase, NAD-dependent [Candidatus Solibacter usitatus
Ellin6076]
Length = 662
Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 31/58 (53%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+E+E L + HH+ YY LD P TD YD + RL L+ + P+L D P VG
Sbjct: 6 VEIEKLREQLHHHEHLYYVLDKPEITDAEYDALMHRLQELETKHPDLLTPDSPTQRVG 63
>gi|73748436|ref|YP_307675.1| DNA ligase, NAD-dependent [Dehalococcoides sp. CBDB1]
gi|123759761|sp|Q3ZX08|DNLJ_DEHSC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|73660152|emb|CAI82759.1| DNA ligase, NAD-dependent [Dehalococcoides sp. CBDB1]
Length = 677
Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 31/59 (52%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+IEVE L + H + YY DNP +D YD + RL L+E PEL D P VG
Sbjct: 5 LIEVENLRREINRHNQLYYVQDNPEISDAQYDTLIRRLKELEEAHPELVTPDSPTQKVG 63
>gi|289432483|ref|YP_003462356.1| DNA ligase, NAD-dependent [Dehalococcoides sp. GT]
gi|288946203|gb|ADC73900.1| DNA ligase, NAD-dependent [Dehalococcoides sp. GT]
Length = 680
Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 31/59 (52%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+IEVE L + H + YY DNP +D YD + RL L+E PEL D P VG
Sbjct: 8 LIEVENLRREINRHNQLYYVQDNPEISDAQYDTLISRLKELEEAHPELVTPDSPTQKVG 66
>gi|326562480|gb|EGE12798.1| NAD-dependent DNA ligase [Moraxella catarrhalis 46P47B1]
gi|326567201|gb|EGE17321.1| NAD-dependent DNA ligase [Moraxella catarrhalis 12P80B1]
gi|326568292|gb|EGE18374.1| NAD-dependent DNA ligase [Moraxella catarrhalis BC8]
Length = 691
Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 38/73 (52%)
Query: 46 DKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFP 105
+ +K S + + + ++ L+K+ H YY +D P +DG YD + L L++Q P
Sbjct: 10 NTSKNNPSKANDQIIAQMCALIKLLKRHNHAYYVMDAPTISDGEYDGLRRTLMMLEQQHP 69
Query: 106 ELFDEDHPWNTVG 118
L D P NTVG
Sbjct: 70 NLIQPDSPINTVG 82
>gi|260555699|ref|ZP_05827919.1| DNA ligase, NAD-dependent [Acinetobacter baumannii ATCC 19606]
gi|260410610|gb|EEX03908.1| DNA ligase, NAD-dependent [Acinetobacter baumannii ATCC 19606]
Length = 691
Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 32/57 (56%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L+++ H YY +D P +D YD + +L AL+EQ+PEL D P VG
Sbjct: 22 QMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQADSPTMKVG 78
>gi|147669216|ref|YP_001214034.1| DNA ligase, NAD-dependent [Dehalococcoides sp. BAV1]
gi|190359250|sp|A5FRL4|DNLJ_DEHSB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|146270164|gb|ABQ17156.1| DNA ligase, NAD-dependent [Dehalococcoides sp. BAV1]
Length = 680
Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 31/59 (52%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+IEVE L + H + YY DNP +D YD + RL L+E PEL D P VG
Sbjct: 8 LIEVENLRREINRHNQLYYVQDNPEISDAQYDTLIRRLKELEEAHPELVTPDSPTQRVG 66
>gi|169630426|ref|YP_001704075.1| NAD-dependent DNA ligase LigA [Mycobacterium abscessus ATCC 19977]
gi|254781373|sp|B1MDV2|DNLJ_MYCA9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|169242393|emb|CAM63421.1| DNA ligase (polydeoxyribonucleotide synthase NAD+) [Mycobacterium
abscessus]
Length = 681
Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 28/46 (60%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HQ YY D P+ +DG +D + RL AL+EQ+PEL D P VG
Sbjct: 19 HQFRYYVKDAPVISDGQFDELLRRLTALEEQYPELRTPDSPTQLVG 64
>gi|154245706|ref|YP_001416664.1| DNA ligase, NAD-dependent [Xanthobacter autotrophicus Py2]
gi|254782313|sp|A7IG64|DNLJ_XANP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|154159791|gb|ABS67007.1| DNA ligase, NAD-dependent [Xanthobacter autotrophicus Py2]
Length = 720
Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 37/72 (51%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
+A V LS EA E + L + H YYR D P+ +D YD + R +A++E+FP
Sbjct: 17 RAIPVDDLSPAEAASEHKALAQEITGHDAAYYREDAPVVSDAEYDALRHRYEAIEERFPG 76
Query: 107 LFDEDHPWNTVG 118
L ED VG
Sbjct: 77 LRGEDSLSEKVG 88
>gi|85859410|ref|YP_461612.1| NAD-dependent DNA ligase [Syntrophus aciditrophicus SB]
gi|123738818|sp|Q2LTN8|DNLJ_SYNAS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|85722501|gb|ABC77444.1| NAD-dependent DNA ligase [Syntrophus aciditrophicus SB]
Length = 672
Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 30/47 (63%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+H + YY+LD+P +D YD + + L AL++QFP+ ED P +G
Sbjct: 20 YHNRRYYQLDDPEISDAEYDSLLQELIALEKQFPQWLTEDSPSRRIG 66
>gi|71064896|ref|YP_263623.1| NAD dependent DNA ligase [Psychrobacter arcticus 273-4]
gi|123734475|sp|Q4FUW9|DNLJ_PSYA2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|71037881|gb|AAZ18189.1| probable NAD dependent DNA ligase [Psychrobacter arcticus 273-4]
Length = 691
Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
+D AK +T+ + ++ + H YY LDNP+ D YD++ L L+E++
Sbjct: 13 IDTAKPITN--DDAIVTQMRTFIDTLKQHNYAYYVLDNPILEDSEYDQLRRSLLELEEEY 70
Query: 105 PELFDEDHPWNTVG 118
P+L D P N VG
Sbjct: 71 PDLVQPDSPINQVG 84
>gi|238752012|ref|ZP_04613496.1| DNA ligase [Yersinia rohdei ATCC 43380]
gi|238709712|gb|EEQ01946.1| DNA ligase [Yersinia rohdei ATCC 43380]
Length = 670
Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 58 EAMIEVEYLVKIAL-HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
E++I+ +K +L HH+ YY LD P D YDR+ ++L L+ Q PEL D P
Sbjct: 2 ESIIQQINQLKTSLRHHEHQYYVLDAPEIPDAEYDRMMQQLRELEAQHPELITNDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|293609092|ref|ZP_06691395.1| DNA ligase [Acinetobacter sp. SH024]
gi|292829665|gb|EFF88027.1| DNA ligase [Acinetobacter sp. SH024]
Length = 679
Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 32/57 (56%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L+++ H YY +D P +D YD + +L AL+EQ+P+L D P VG
Sbjct: 9 QMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPDLVQSDSPTTKVG 65
>gi|325121133|gb|ADY80656.1| DNA ligase [Acinetobacter calcoaceticus PHEA-2]
Length = 679
Score = 48.1 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 32/57 (56%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L+++ H YY +D P +D YD + +L AL+EQ+P+L D P VG
Sbjct: 9 QMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPDLVQSDSPTTKVG 65
>gi|50084060|ref|YP_045570.1| DNA ligase [Acinetobacter sp. ADP1]
gi|81393600|sp|Q6FDW0|DNLJ_ACIAD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|49530036|emb|CAG67748.1| DNA ligase [Acinetobacter sp. ADP1]
Length = 676
Score = 48.1 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + + ++ L+++ H YY +D P TD YD++ +L AL+ ++PEL D P
Sbjct: 2 MQPADIVAQMRQLIQLIAKHNHAYYVMDQPSITDNEYDQLFHQLKALEAEYPELTQADTP 61
Query: 114 WNTVG 118
N VG
Sbjct: 62 TNRVG 66
>gi|118617527|ref|YP_905859.1| NAD-dependent DNA ligase LigA [Mycobacterium ulcerans Agy99]
gi|166216215|sp|A0PPW9|DNLJ_MYCUA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|118569637|gb|ABL04388.1| DNA ligase [NAD dependent] LigA [Mycobacterium ulcerans Agy99]
Length = 683
Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 28/46 (60%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HQ YY D P+ TD +D + RL+AL+EQ+PEL D P VG
Sbjct: 15 HQFRYYVRDAPVITDAEFDELLRRLEALEEQYPELRTPDSPTQLVG 60
>gi|83592275|ref|YP_426027.1| DNA ligase (NAD+) [Rhodospirillum rubrum ATCC 11170]
gi|123753272|sp|Q2RVV5|DNLJ_RHORT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|83575189|gb|ABC21740.1| DNA ligase (NAD+) [Rhodospirillum rubrum ATCC 11170]
Length = 698
Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 35/68 (51%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V L++ EA E+E L H + Y++ D P TDG YD + R + ++ FPEL
Sbjct: 4 VADLTEAEAARELERLAAEIARHDRLYHQQDAPEITDGEYDALVRRNNEIEAAFPELVRG 63
Query: 111 DHPWNTVG 118
D P VG
Sbjct: 64 DSPSAHVG 71
>gi|258514074|ref|YP_003190296.1| DNA ligase, NAD-dependent [Desulfotomaculum acetoxidans DSM 771]
gi|257777779|gb|ACV61673.1| DNA ligase, NAD-dependent [Desulfotomaculum acetoxidans DSM 771]
Length = 677
Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 27/46 (58%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY +DNP+ D YDR+ L AL++QFP+L E P VG
Sbjct: 20 HNYNYYVMDNPVIGDAEYDRLMLELTALEQQFPDLLSEHSPTQRVG 65
>gi|197105771|ref|YP_002131148.1| DNA ligase, NAD-dependent [Phenylobacterium zucineum HLK1]
gi|254781386|sp|B4RFE9|DNLJ_PHEZH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|196479191|gb|ACG78719.1| DNA ligase, NAD-dependent [Phenylobacterium zucineum HLK1]
Length = 692
Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 34/70 (48%)
Query: 49 KKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF 108
K V SL++ EA E+ L H YYR D P +D YD + R D L+ FP L
Sbjct: 2 KSVESLTEAEAAEELTRLADEIAAHDIRYYREDAPTISDAAYDALRRRNDELEAAFPHLI 61
Query: 109 DEDHPWNTVG 118
E+ P +G
Sbjct: 62 RENSPSLRIG 71
>gi|224369899|ref|YP_002604063.1| LigA1 [Desulfobacterium autotrophicum HRM2]
gi|254781310|sp|C0QJ86|DNLJ_DESAH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|223692616|gb|ACN15899.1| LigA1 [Desulfobacterium autotrophicum HRM2]
Length = 685
Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 66 LVKIALH-HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L++ LH H Y+ D+P+ +DG YDR+ +RL A++ QFPEL D P +G
Sbjct: 17 LLREQLHVHNINYHVKDDPVISDGEYDRMMQRLIAIETQFPELSTPDSPTRRIG 70
>gi|166216283|sp|Q07PR9|DNLJ_RHOP5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
Length = 715
Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 36/68 (52%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V +L+K +A +E+ L H K YY+ D P +D YD + RL+ ++ +FPEL
Sbjct: 11 VATLTKAKAKVELMRLALEIERHDKAYYQEDAPKVSDADYDALRRRLEEIEHKFPELVSG 70
Query: 111 DHPWNTVG 118
P VG
Sbjct: 71 ASPSQKVG 78
>gi|254781232|sp|B0VU02|DNLJ_ACIBS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
Length = 678
Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 31/57 (54%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L+++ H YY +D P +D YD + +L AL+EQ+PE D P VG
Sbjct: 9 QMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPEFVQADSPTTKVG 65
>gi|169634132|ref|YP_001707868.1| DNA ligase [Acinetobacter baumannii SDF]
gi|169152924|emb|CAP01965.1| DNA ligase [Acinetobacter baumannii]
Length = 691
Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 31/57 (54%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L+++ H YY +D P +D YD + +L AL+EQ+PE D P VG
Sbjct: 22 QMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPEFVQADSPTTKVG 78
>gi|148257407|ref|YP_001241992.1| DNA ligase (polydeoxyribonucleotide synthase (NAD+))
[Bradyrhizobium sp. BTAi1]
gi|166215399|sp|A5EPJ2|DNLJ_BRASB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|146409580|gb|ABQ38086.1| DNA ligase (Polydeoxyribonucleotide synthase (NAD+))
[Bradyrhizobium sp. BTAi1]
Length = 716
Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 37/72 (51%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
K V L+K +A +E + L H + YY+ D P +D YD + R +A++ +FPE
Sbjct: 9 KPVDVAELTKAQAKVEWKRLALELEVHDRLYYQDDAPKISDAEYDELRRRFNAIETRFPE 68
Query: 107 LFDEDHPWNTVG 118
L + P VG
Sbjct: 69 LVSSESPSQKVG 80
>gi|115524134|ref|YP_781045.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris BisA53]
gi|115518081|gb|ABJ06065.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris BisA53]
Length = 730
Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 36/68 (52%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V +L+K +A +E+ L H K YY+ D P +D YD + RL+ ++ +FPEL
Sbjct: 26 VATLTKAKAKVELMRLALEIERHDKAYYQEDAPKVSDADYDALRRRLEEIEHKFPELVSG 85
Query: 111 DHPWNTVG 118
P VG
Sbjct: 86 ASPSQKVG 93
>gi|317491275|ref|ZP_07949711.1| DNA ligase [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316920822|gb|EFV42145.1| DNA ligase [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 678
Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 26/47 (55%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ LD P D YDR+ L AL+EQ PEL D P VG
Sbjct: 22 HHEYQYHVLDAPEIPDAEYDRLMRELRALEEQHPELITPDSPTQRVG 68
>gi|259502571|ref|ZP_05745473.1| DNA ligase [Lactobacillus antri DSM 16041]
gi|259169461|gb|EEW53956.1| DNA ligase [Lactobacillus antri DSM 16041]
Length = 678
Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 37/74 (50%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
+DK V L+ A E+ L + + YY DNP D +YDR +RL L+++F
Sbjct: 1 MDKQTPVDQLTLAAAKQEIAPLRQQLTKWGREYYEQDNPSVEDYVYDRAYQRLVELEQRF 60
Query: 105 PELFDEDHPWNTVG 118
PEL D P VG
Sbjct: 61 PELKTSDSPTQHVG 74
>gi|134300185|ref|YP_001113681.1| NAD-dependent DNA ligase [Desulfotomaculum reducens MI-1]
gi|190359251|sp|A4J703|DNLJ_DESRM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|134052885|gb|ABO50856.1| DNA ligase, NAD-dependent [Desulfotomaculum reducens MI-1]
Length = 670
Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 32/61 (52%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
++ VE L + HH YY LD P TD YD++ + L L+E+ PEL D P V
Sbjct: 7 QSKARVEALRREINHHNYQYYVLDQPTITDAQYDQLMQELLRLEERHPELVTPDSPTQRV 66
Query: 118 G 118
G
Sbjct: 67 G 67
>gi|291277000|ref|YP_003516772.1| DNA ligase [Helicobacter mustelae 12198]
gi|290964194|emb|CBG40040.1| DNA ligase [Helicobacter mustelae 12198]
Length = 669
Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
K+KK TS+ K + +VE L K+A H YY LD+P+ +D YD + + +E PE
Sbjct: 13 KSKKETSMEKEQYEKKVEQLKKMAYH----YYVLDDPISSDEEYDILYHEVKGYEEAHPE 68
Query: 107 LFDEDHPWNTVG 118
ED P VG
Sbjct: 69 AIREDSPTQRVG 80
>gi|284053772|ref|ZP_06383982.1| NAD-dependent DNA ligase LigA [Arthrospira platensis str. Paraca]
Length = 683
Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 25/42 (59%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P+ DG+YDR+ L L+ Q+PEL D P VG
Sbjct: 30 YYVLDAPIMEDGVYDRLYRELQELENQYPELISPDSPTQRVG 71
>gi|294649516|ref|ZP_06726937.1| NAD-dependent DNA ligase LigA [Acinetobacter haemolyticus ATCC
19194]
gi|292824577|gb|EFF83359.1| NAD-dependent DNA ligase LigA [Acinetobacter haemolyticus ATCC
19194]
Length = 675
Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 32/57 (56%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L+++ H YY +D P +D YD + +L AL++Q+PE D P N VG
Sbjct: 9 QMRQLIQLIAKHNHAYYVMDQPSISDSEYDHLFHQLKALEQQYPECIQADTPTNKVG 65
>gi|226953496|ref|ZP_03823960.1| DNA ligase [Acinetobacter sp. ATCC 27244]
gi|226835781|gb|EEH68164.1| DNA ligase [Acinetobacter sp. ATCC 27244]
Length = 675
Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 32/57 (56%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L+++ H YY +D P +D YD + +L AL++Q+PE D P N VG
Sbjct: 9 QMRQLIQLIAKHNHAYYVMDQPSISDSEYDHLFHQLKALEQQYPECIQADTPTNKVG 65
>gi|163760776|ref|ZP_02167856.1| DNA ligase, NAD-dependent [Hoeflea phototrophica DFL-43]
gi|162282098|gb|EDQ32389.1| DNA ligase, NAD-dependent [Hoeflea phototrophica DFL-43]
Length = 739
Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 37/70 (52%)
Query: 49 KKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF 108
K + +LS+ EA E++ L H + Y+R D P+ +D YD R A++E+FP L
Sbjct: 42 KPIEALSEAEAKAELDRLAAEIARHDEAYHRKDAPIVSDAEYDAFKRRNLAIEERFPHLR 101
Query: 109 DEDHPWNTVG 118
D P VG
Sbjct: 102 LADSPSLKVG 111
>gi|114570616|ref|YP_757296.1| DNA ligase [Maricaulis maris MCS10]
gi|122315591|sp|Q0AMX9|DNLJ_MARMM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|114341078|gb|ABI66358.1| DNA ligase, NAD-dependent [Maricaulis maris MCS10]
Length = 701
Score = 47.8 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 36/70 (51%)
Query: 49 KKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF 108
K V L++ EA E L + H K YY+ D P +D YD + +L+A++ +FP+
Sbjct: 5 KDVDQLTEAEARAEHARLAREIAGHDKAYYQSDAPKISDAAYDALRRKLEAIEVRFPQFI 64
Query: 109 DEDHPWNTVG 118
D P VG
Sbjct: 65 DLLSPTQRVG 74
>gi|227515527|ref|ZP_03945576.1| DNA ligase (NAD(+)) [Lactobacillus fermentum ATCC 14931]
gi|227086140|gb|EEI21452.1| DNA ligase (NAD(+)) [Lactobacillus fermentum ATCC 14931]
Length = 679
Score = 47.8 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKW---YYRLDNPLFTDGLYDRVSERLDALQ 101
+ K + V+ L+K +A E L + +KW YY DNP D +YDR +RL ++
Sbjct: 1 MSKQEAVSELTKQQAQAE---LTPLREQLKKWGAEYYEQDNPSVEDYVYDRAYQRLVEIE 57
Query: 102 EQFPELFDEDHPWNTVG 118
++FP+L D P VG
Sbjct: 58 QRFPDLVVPDSPTQRVG 74
>gi|39936579|ref|NP_948855.1| DNA ligase [Rhodopseudomonas palustris CGA009]
gi|39650435|emb|CAE28958.1| DNA ligase [Rhodopseudomonas palustris CGA009]
Length = 692
Score = 47.8 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 29/46 (63%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H K YY+ D P +D YD + RL+A++++FPEL + P TVG
Sbjct: 10 HDKAYYQDDAPKISDADYDALRRRLEAIEQKFPELVNASSPTQTVG 55
>gi|262375659|ref|ZP_06068891.1| DNA ligase, NAD-dependent [Acinetobacter lwoffii SH145]
gi|262309262|gb|EEY90393.1| DNA ligase, NAD-dependent [Acinetobacter lwoffii SH145]
Length = 679
Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 33/57 (57%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L+++ H YY +D P D YD++ +L AL++Q+P+L D P + VG
Sbjct: 10 QMRQLIQLLAKHNHAYYVMDQPSIEDSEYDQLFHQLKALEQQYPDLIQSDSPTDKVG 66
>gi|291296053|ref|YP_003507451.1| DNA ligase NAD-dependent [Meiothermus ruber DSM 1279]
gi|290471012|gb|ADD28431.1| DNA ligase, NAD-dependent [Meiothermus ruber DSM 1279]
Length = 666
Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+ ++E+ L++ +H YY LD P +D YDR+ + L AL+E PEL D P TV
Sbjct: 6 QRIMELRELIR---YHNYRYYVLDKPEISDAEYDRLLQELRALEEAHPELIIPDSPTQTV 62
Query: 118 G 118
G
Sbjct: 63 G 63
>gi|315634861|ref|ZP_07890143.1| NAD-dependent DNA ligase LigA [Aggregatibacter segnis ATCC 33393]
gi|315476413|gb|EFU67163.1| NAD-dependent DNA ligase LigA [Aggregatibacter segnis ATCC 33393]
Length = 671
Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 33/57 (57%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L K +H+ Y+ LD+P D YDR+ +L AL++Q PEL D P VG
Sbjct: 8 QIDDLRKTLRYHEYQYHVLDDPQIPDSEYDRLFHQLKALEQQHPELITADSPTQRVG 64
>gi|284047985|ref|YP_003398324.1| DNA ligase, NAD-dependent [Acidaminococcus fermentans DSM 20731]
gi|283952206|gb|ADB47009.1| DNA ligase, NAD-dependent [Acidaminococcus fermentans DSM 20731]
Length = 675
Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 35/68 (51%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
++ ++K A ++ L + + YY DNPL TD YD + L AL+ ++PEL
Sbjct: 1 MSEMTKEAAAARIDQLRAVMKKNSYLYYVQDNPLITDAEYDAMMRELKALEAEYPELVTP 60
Query: 111 DHPWNTVG 118
D P VG
Sbjct: 61 DSPSQHVG 68
>gi|297566494|ref|YP_003685466.1| DNA ligase, NAD-dependent [Meiothermus silvanus DSM 9946]
gi|296850943|gb|ADH63958.1| DNA ligase, NAD-dependent [Meiothermus silvanus DSM 9946]
Length = 670
Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 33/61 (54%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
EA + L + +H YY LD+P+ +D YDR+ L L+ ++PEL D P TV
Sbjct: 10 EAQRRIHQLREEIRYHNYRYYVLDDPVISDAEYDRLLRELKELEARYPELVTPDSPTQTV 69
Query: 118 G 118
G
Sbjct: 70 G 70
>gi|84516174|ref|ZP_01003534.1| DNA ligase [Loktanella vestfoldensis SKA53]
gi|84509870|gb|EAQ06327.1| DNA ligase [Loktanella vestfoldensis SKA53]
Length = 722
Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V L++ EAM+E+ L + Y+R D P +D YD + +R A++ +F EL
Sbjct: 24 VADLTRAEAMVELARLAQTLAQANTAYHRNDTPEISDAAYDALKQRNAAIEARFRELKRA 83
Query: 111 DHPWNTVG 118
D P + VG
Sbjct: 84 DSPSDQVG 91
>gi|325675870|ref|ZP_08155554.1| DNA ligase [Rhodococcus equi ATCC 33707]
gi|325553841|gb|EGD23519.1| DNA ligase [Rhodococcus equi ATCC 33707]
Length = 711
Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 34/53 (64%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L ++ +HQ YY LD+P+ +DG +D++ L+AL+E+ P+L D P VG
Sbjct: 32 LAEVVRNHQFRYYVLDSPIVSDGEFDQLFGELNALEERHPDLRTPDSPTQLVG 84
>gi|254480787|ref|ZP_05094034.1| DNA ligase, NAD-dependent [marine gamma proteobacterium HTCC2148]
gi|214039370|gb|EEB80030.1| DNA ligase, NAD-dependent [marine gamma proteobacterium HTCC2148]
Length = 677
Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 24/42 (57%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD+P D YDR +L +EQFPEL ED P VG
Sbjct: 24 YYVLDDPSVPDAEYDRYLRQLQGFEEQFPELVTEDSPTQRVG 65
>gi|312140511|ref|YP_004007847.1| DNA ligase (nad+) liga [Rhodococcus equi 103S]
gi|311889850|emb|CBH49167.1| DNA ligase (NAD+) LigA [Rhodococcus equi 103S]
Length = 712
Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 34/53 (64%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L ++ +HQ YY LD+P+ +DG +D++ L+AL+E+ P+L D P VG
Sbjct: 32 LAEVVRNHQFRYYVLDSPIVSDGEFDQLFGELNALEERHPDLRTPDSPTQLVG 84
>gi|268316781|ref|YP_003290500.1| DNA ligase, NAD-dependent [Rhodothermus marinus DSM 4252]
gi|262334315|gb|ACY48112.1| DNA ligase, NAD-dependent [Rhodothermus marinus DSM 4252]
Length = 712
Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 29 TLEAKFLPNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDG 88
T EA+ L L + + + + ++ + EA L ++ H YY LDNPL D
Sbjct: 9 TAEARLLEATHTLLQTV-RQRDLEAIDRKEAEALAARLREVLNQHAYRYYVLDNPLIPDA 67
Query: 89 LYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YD + + L L+ +FPEL D P VG
Sbjct: 68 DYDLLMQALRKLEARFPELVTPDSPTQRVG 97
>gi|1352292|sp|P49421|DNLJ_RHOMR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|607820|gb|AAA93198.1| DNA ligase [Rhodothermus marinus]
Length = 712
Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 29 TLEAKFLPNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDG 88
T EA+ L L + + + + ++ + EA L ++ H YY LDNPL D
Sbjct: 9 TAEARLLEATHTLLQTV-RQRDLEAIDRKEAEALAARLREVLNQHAYRYYVLDNPLIPDA 67
Query: 89 LYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YD + + L L+ +FPEL D P VG
Sbjct: 68 DYDLLMQALRKLEARFPELVTPDSPTQRVG 97
>gi|326559356|gb|EGE09783.1| NAD-dependent DNA ligase [Moraxella catarrhalis 7169]
Length = 691
Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 37/73 (50%)
Query: 46 DKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFP 105
+ +K S + + + ++ L+K+ H YY +D P +D YD + L L++Q P
Sbjct: 10 NTSKNNPSKANDQIIAQMRALIKLLKRHNHAYYVMDAPTISDDEYDGLRRTLMMLEQQHP 69
Query: 106 ELFDEDHPWNTVG 118
L D P NTVG
Sbjct: 70 NLIQPDSPINTVG 82
>gi|262280095|ref|ZP_06057880.1| DNA ligase [Acinetobacter calcoaceticus RUH2202]
gi|262260446|gb|EEY79179.1| DNA ligase [Acinetobacter calcoaceticus RUH2202]
Length = 692
Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 31/57 (54%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L+++ H YY +D P +D YD + +L AL+EQ+PE D P VG
Sbjct: 22 QMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPEQVQSDSPTTKVG 78
>gi|94263030|ref|ZP_01286849.1| DNA ligase (NAD+) [delta proteobacterium MLMS-1]
gi|93456573|gb|EAT06681.1| DNA ligase (NAD+) [delta proteobacterium MLMS-1]
Length = 678
Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 69 IALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
IA H+ + YY LD+P +DG YDR+ L+ L+ ++PEL D P VG
Sbjct: 24 IAYHNHR-YYVLDDPELSDGEYDRLFRELEELESRWPELVTADSPSRRVG 72
>gi|262379150|ref|ZP_06072306.1| DNA ligase, NAD-dependent [Acinetobacter radioresistens SH164]
gi|262298607|gb|EEY86520.1| DNA ligase, NAD-dependent [Acinetobacter radioresistens SH164]
Length = 682
Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 32/57 (56%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L+++ H YY +D P +D YD + +L AL+EQ+P+L D P VG
Sbjct: 14 QMRQLIQLIAQHNHAYYVMDQPSISDNEYDSLFHQLKALEEQYPDLVQNDTPTRRVG 70
>gi|239832299|ref|ZP_04680628.1| DNA ligase, NAD-dependent [Ochrobactrum intermedium LMG 3301]
gi|239824566|gb|EEQ96134.1| DNA ligase, NAD-dependent [Ochrobactrum intermedium LMG 3301]
Length = 734
Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 36/68 (52%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V L++ EA+ E+ L + HH + Y+ D P +D YD + R DA++ +FP L
Sbjct: 21 VEKLTEPEAVSELGRLAREIAHHDELYHANDRPEISDAEYDALKRRNDAIEARFPHLVRT 80
Query: 111 DHPWNTVG 118
D P VG
Sbjct: 81 DSPSLRVG 88
>gi|255318624|ref|ZP_05359855.1| DNA ligase, NAD-dependent [Acinetobacter radioresistens SK82]
gi|255304306|gb|EET83492.1| DNA ligase, NAD-dependent [Acinetobacter radioresistens SK82]
Length = 678
Score = 47.4 bits (111), Expect = 8e-04, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 32/57 (56%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L+++ H YY +D P +D YD + +L AL+EQ+P+L D P VG
Sbjct: 10 QMRQLIQLIAQHNHAYYVMDQPSISDNEYDSLFHQLKALEEQYPDLVQNDTPTRRVG 66
>gi|307944884|ref|ZP_07660221.1| DNA ligase, NAD-dependent [Roseibium sp. TrichSKD4]
gi|307771808|gb|EFO31032.1| DNA ligase, NAD-dependent [Roseibium sp. TrichSKD4]
Length = 721
Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V +L+ +A E+E L H K Y++ D P +D YD + R A++ +FP+L +
Sbjct: 15 VEALTSEQAETELERLANAIAKHDKLYHQDDAPAISDADYDALRRRNTAIEARFPDLVRD 74
Query: 111 DHPWNTVG 118
D P VG
Sbjct: 75 DSPSRNVG 82
>gi|332798609|ref|YP_004460108.1| DNA ligase [Tepidanaerobacter sp. Re1]
gi|332696344|gb|AEE90801.1| DNA ligase [Tepidanaerobacter sp. Re1]
Length = 675
Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 27/47 (57%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+H YY LDNP TD YD++ L +L+ QFP+L D P VG
Sbjct: 19 YHNYRYYVLDNPEITDAEYDKLMRELISLESQFPQLITPDSPSQRVG 65
>gi|304392246|ref|ZP_07374188.1| DNA ligase, NAD-dependent [Ahrensia sp. R2A130]
gi|303296475|gb|EFL90833.1| DNA ligase, NAD-dependent [Ahrensia sp. R2A130]
Length = 716
Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H Y+ D P +DG YD + +R A++E+FP+L ED P N VG
Sbjct: 33 HDARYHNDDAPTISDGAYDTLRKRNTAIEERFPDLVREDSPSNNVG 78
>gi|169831769|ref|YP_001717751.1| NAD-dependent DNA ligase [Candidatus Desulforudis audaxviator
MP104C]
gi|254781311|sp|B1I551|DNLJ_DESAP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|169638613|gb|ACA60119.1| DNA ligase, NAD-dependent [Candidatus Desulforudis audaxviator
MP104C]
Length = 672
Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 31/61 (50%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
EA E L + +H YY LD+P+ D YDR+ L AL+ +PEL D P V
Sbjct: 5 EARARAEELRREIEYHDHRYYVLDDPVIEDAEYDRLVRELVALETAYPELVTPDSPTQRV 64
Query: 118 G 118
G
Sbjct: 65 G 65
>gi|93005182|ref|YP_579619.1| DNA ligase, NAD-dependent [Psychrobacter cryohalolentis K5]
gi|122989955|sp|Q1QDW8|DNLJ_PSYCK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|92392860|gb|ABE74135.1| DNA ligase, NAD-dependent [Psychrobacter cryohalolentis K5]
Length = 691
Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY LDNP+ D YD++ L L+E++P+L D P N VG
Sbjct: 39 HNYAYYVLDNPILEDSEYDQLRRSLLELEEEYPDLIQPDSPINQVG 84
>gi|319407493|emb|CBI81141.1| DNA ligase [Bartonella sp. 1-1C]
Length = 725
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
+ +L+ EA E+E+L K H Y+R D P +D YD + R + ++ FPEL
Sbjct: 6 IKNLTALEAASELEWLAKEIARHDVLYHRDDQPEISDAEYDALCRRNEEIEALFPELIRA 65
Query: 111 DHPWNTVG 118
D P + +G
Sbjct: 66 DSPSSKIG 73
>gi|319404500|emb|CBI78105.1| DNA ligase [Bartonella rochalimae ATCC BAA-1498]
Length = 725
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
+ +L+ EA E+E+L K H Y+R D P +D YD + R + ++ FPEL
Sbjct: 6 IKNLTALEAASELEWLAKEIARHDVLYHRDDQPEISDAEYDALCRRNEEIEALFPELIRA 65
Query: 111 DHPWNTVG 118
D P + +G
Sbjct: 66 DSPSSKIG 73
>gi|240168924|ref|ZP_04747583.1| NAD-dependent DNA ligase LigA [Mycobacterium kansasii ATCC 12478]
Length = 683
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 27/46 (58%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HQ YY D P+ TD +D + RL+ L+EQ+PEL D P VG
Sbjct: 15 HQFRYYVRDAPIITDAEFDELLRRLEVLEEQYPELRTPDSPTQLVG 60
>gi|304415222|ref|ZP_07395930.1| DNA ligase (NAD(+)-dependent) [Candidatus Regiella insecticola
LSR1]
gi|304282928|gb|EFL91383.1| DNA ligase (NAD(+)-dependent) [Candidatus Regiella insecticola
LSR1]
Length = 674
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 27/50 (54%)
Query: 69 IALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
I HH+ Y+ LDNP D YDR+ L L+ Q+PEL D P VG
Sbjct: 14 ILQHHEYQYHVLDNPEIPDAEYDRLMNELRELETQYPELICADSPTQRVG 63
>gi|15642875|ref|NP_227916.1| DNA ligase [Thermotoga maritima MSB8]
gi|7674016|sp|Q9WXV5|DNLJ_THEMA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|4980590|gb|AAD35194.1|AE001696_8 DNA ligase [Thermotoga maritima MSB8]
Length = 688
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 34/61 (55%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E + EVE L + +H YY L++P+ TD YDR+ RL L+ +PEL D P V
Sbjct: 9 EVIEEVERLREEIEYHNYRYYVLNDPVITDEEYDRLMRRLIELERMYPELVTPDSPTQRV 68
Query: 118 G 118
G
Sbjct: 69 G 69
>gi|310823543|ref|YP_003955901.1| DNA ligase [Stigmatella aurantiaca DW4/3-1]
gi|309396615|gb|ADO74074.1| DNA ligase [Stigmatella aurantiaca DW4/3-1]
Length = 673
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 25/47 (53%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH YY LD+P +D YDR+ L L+ QFP L D P VG
Sbjct: 19 HHNHRYYVLDSPEVSDAEYDRLMRELQGLEAQFPALATPDSPTQRVG 65
>gi|222099565|ref|YP_002534133.1| DNA ligase [Thermotoga neapolitana DSM 4359]
gi|254781438|sp|B9K734|DNLJ_THENN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|221571955|gb|ACM22767.1| DNA ligase [Thermotoga neapolitana DSM 4359]
Length = 693
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 34/61 (55%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E + EVE L + +H YY L++P+ TD YDR+ RL L+ +PEL D P V
Sbjct: 14 EVIEEVERLREEIEYHNYRYYVLNDPVITDEEYDRLMRRLIELERMYPELVTPDSPTQRV 73
Query: 118 G 118
G
Sbjct: 74 G 74
>gi|260887264|ref|ZP_05898527.1| DNA ligase, NAD-dependent [Selenomonas sputigena ATCC 35185]
gi|330838979|ref|YP_004413559.1| DNA ligase, NAD-dependent [Selenomonas sputigena ATCC 35185]
gi|260863326|gb|EEX77826.1| DNA ligase, NAD-dependent [Selenomonas sputigena ATCC 35185]
gi|329746743|gb|AEC00100.1| DNA ligase, NAD-dependent [Selenomonas sputigena ATCC 35185]
Length = 669
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 33/61 (54%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E E+ L + HH YY DNP +D YD++ +L AL+ ++PEL E+ P V
Sbjct: 5 EVKKELAQLRRTIRHHNVRYYNDDNPEISDYEYDQLMLQLKALEREYPELITENSPTQKV 64
Query: 118 G 118
G
Sbjct: 65 G 65
>gi|116334213|ref|YP_795740.1| NAD-dependent DNA ligase [Lactobacillus brevis ATCC 367]
gi|122269104|sp|Q03Q13|DNLJ_LACBA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|116099560|gb|ABJ64709.1| NAD-dependent DNA ligase [Lactobacillus brevis ATCC 367]
Length = 676
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 34/70 (48%)
Query: 49 KKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF 108
K + +L+ +A E L L K YY D P D +YDRV RL AL+ FPE+
Sbjct: 4 KPIKTLTVEQAAEEAADLRPQLLEWGKQYYEADAPSVEDDVYDRVYARLVALETAFPEIV 63
Query: 109 DEDHPWNTVG 118
D P VG
Sbjct: 64 TPDSPTQRVG 73
>gi|313903518|ref|ZP_07836909.1| DNA ligase, NAD-dependent [Thermaerobacter subterraneus DSM 13965]
gi|313466339|gb|EFR61862.1| DNA ligase, NAD-dependent [Thermaerobacter subterraneus DSM 13965]
Length = 817
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 30/60 (50%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
A VE L + HH YY LD P D YD + +L L+++FPEL D P VG
Sbjct: 57 ARARVEALREQIRHHDYLYYVLDRPEIDDAAYDALMRQLRELEQRFPELVTPDSPTQRVG 116
>gi|307244055|ref|ZP_07526174.1| DNA ligase (NAD+) [Peptostreptococcus stomatis DSM 17678]
gi|306492579|gb|EFM64613.1| DNA ligase (NAD+) [Peptostreptococcus stomatis DSM 17678]
Length = 702
Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK EA + V L++I +H YY D+P +D YDR+ + L L+E FPE +D P
Sbjct: 22 ISKKEAGLMVGDLIEILNYHSDRYYNSDSPEISDMDYDRLMKSLILLEEAFPEYKKKDSP 81
Query: 114 WNTVG 118
VG
Sbjct: 82 TVRVG 86
>gi|306819948|ref|ZP_07453599.1| NAD-dependent DNA ligase LigA [Eubacterium yurii subsp. margaretiae
ATCC 43715]
gi|304551984|gb|EFM39924.1| NAD-dependent DNA ligase LigA [Eubacterium yurii subsp. margaretiae
ATCC 43715]
Length = 675
Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 36/61 (59%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
EA +++E L + K YY DNP+ +D YD + +L +L+E++PEL D P N V
Sbjct: 6 EARVKIEELKAEIEKNNKLYYEDDNPVISDYDYDMMMRQLISLEEKYPELKTPDSPSNRV 65
Query: 118 G 118
G
Sbjct: 66 G 66
>gi|238792031|ref|ZP_04635667.1| DNA ligase [Yersinia intermedia ATCC 29909]
gi|238728662|gb|EEQ20180.1| DNA ligase [Yersinia intermedia ATCC 29909]
Length = 670
Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 27/47 (57%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ LD P D YDR+ ++L +L+ Q PEL D P VG
Sbjct: 17 HHEHLYHVLDAPEIPDAEYDRLMQQLRSLEAQHPELITHDSPTQRVG 63
>gi|254785950|ref|YP_003073379.1| DNA ligase, NAD-dependent [Teredinibacter turnerae T7901]
gi|237685872|gb|ACR13136.1| DNA ligase, NAD-dependent [Teredinibacter turnerae T7901]
Length = 676
Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 25/47 (53%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH + YY LD P D YDR+ L L+ +FP+L D P VG
Sbjct: 24 HHNRQYYLLDEPEIPDAEYDRLFHELKTLEAEFPQLETADSPTQRVG 70
>gi|147678862|ref|YP_001213077.1| NAD-dependent DNA ligase [Pelotomaculum thermopropionicum SI]
gi|190359268|sp|A5CZ68|DNLJ_PELTS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|146274959|dbj|BAF60708.1| NAD-dependent DNA ligase [Pelotomaculum thermopropionicum SI]
Length = 679
Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 25/47 (53%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH YY LD P TD YDR+ L+ L++QFP L P VG
Sbjct: 21 HHNYLYYVLDRPAITDAQYDRLMRELERLEKQFPALVTPYSPTQRVG 67
>gi|239815926|ref|YP_002944836.1| DNA ligase, NAD-dependent [Variovorax paradoxus S110]
gi|239802503|gb|ACS19570.1| DNA ligase, NAD-dependent [Variovorax paradoxus S110]
Length = 694
Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/49 (46%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 71 LH-HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LH H YY LD P D YDR+ +RL AL+ ++PEL D P VG
Sbjct: 18 LHKHAHLYYVLDAPELPDAEYDRLFQRLQALEAEYPELRTPDSPTQRVG 66
>gi|319793880|ref|YP_004155520.1| DNA ligase, NAD-dependent [Variovorax paradoxus EPS]
gi|315596343|gb|ADU37409.1| DNA ligase, NAD-dependent [Variovorax paradoxus EPS]
Length = 694
Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/49 (46%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 71 LH-HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LH H YY LD P D YD++ +RL AL+ +FPEL D P VG
Sbjct: 18 LHKHAHLYYVLDAPELPDAEYDKLFQRLQALETEFPELRTPDSPTQRVG 66
>gi|308375959|ref|ZP_07668156.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu007]
gi|308344705|gb|EFP33556.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu007]
Length = 614
Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 33/61 (54%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E + + + L + HQ YY D P+ +D +D + RL+AL+EQ PEL D P V
Sbjct: 12 EVLRQWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALEEQHPELRTPDSPTQLV 71
Query: 118 G 118
G
Sbjct: 72 G 72
>gi|258651684|ref|YP_003200840.1| DNA ligase, NAD-dependent [Nakamurella multipartita DSM 44233]
gi|258554909|gb|ACV77851.1| DNA ligase, NAD-dependent [Nakamurella multipartita DSM 44233]
Length = 736
Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 28/53 (52%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L +I Q YY LD P +DG +D V LD L+EQ+P L D P VG
Sbjct: 30 LTQIITDAQFRYYVLDAPTMSDGEFDTVLRELDGLEEQYPSLRTPDSPTQRVG 82
>gi|114705256|ref|ZP_01438164.1| DNA ligase, NAD-dependent [Fulvimarina pelagi HTCC2506]
gi|114540041|gb|EAU43161.1| DNA ligase, NAD-dependent [Fulvimarina pelagi HTCC2506]
Length = 821
Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 34/68 (50%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V +L + EA E+E L + H + YY D P +D YD + R A++ +FP L
Sbjct: 6 VENLDETEAASELERLAREIAEHDRAYYGDDAPTLSDADYDALRRRNTAIEARFPALIRA 65
Query: 111 DHPWNTVG 118
D P VG
Sbjct: 66 DSPSKRVG 73
>gi|258592875|emb|CBE69184.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [NC10
bacterium 'Dutch sediment']
Length = 684
Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 31/57 (54%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+V+ L ++ H+ YY LD P TD +D + +RL L+ Q PEL D P VG
Sbjct: 10 QVDDLRQLIRRHEYLYYVLDRPEITDAEFDTLYQRLQTLETQHPELITPDSPTQRVG 66
>gi|215412865|ref|ZP_03421575.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis
94_M4241A]
gi|298526485|ref|ZP_07013894.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis
94_M4241A]
gi|298496279|gb|EFI31573.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis
94_M4241A]
Length = 691
Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 33/61 (54%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E + + + L + HQ YY D P+ +D +D + RL+AL+EQ PEL D P V
Sbjct: 12 EVLRQWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALEEQHPELRTPDSPTQLV 71
Query: 118 G 118
G
Sbjct: 72 G 72
>gi|15610151|ref|NP_217530.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis H37Rv]
gi|31794191|ref|NP_856684.1| NAD-dependent DNA ligase LigA [Mycobacterium bovis AF2122/97]
gi|121638896|ref|YP_979120.1| NAD-dependent DNA ligase LigA [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|148662865|ref|YP_001284388.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis H37Ra]
gi|148824204|ref|YP_001288958.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis F11]
gi|161350059|ref|NP_337609.2| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis CDC1551]
gi|167967816|ref|ZP_02550093.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis H37Ra]
gi|215431968|ref|ZP_03429887.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis EAS054]
gi|219559049|ref|ZP_03538125.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis T17]
gi|224991388|ref|YP_002646077.1| NAD-dependent DNA ligase [Mycobacterium bovis BCG str. Tokyo 172]
gi|254365649|ref|ZP_04981694.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis str.
Haarlem]
gi|260188040|ref|ZP_05765514.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis CPHL_A]
gi|260206343|ref|ZP_05773834.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis K85]
gi|289448688|ref|ZP_06438432.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis CPHL_A]
gi|289553196|ref|ZP_06442406.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis KZN 605]
gi|289571216|ref|ZP_06451443.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis T17]
gi|289575722|ref|ZP_06455949.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis K85]
gi|289755132|ref|ZP_06514510.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis EAS054]
gi|294993895|ref|ZP_06799586.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis 210]
gi|297635642|ref|ZP_06953422.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis KZN 4207]
gi|297732640|ref|ZP_06961758.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis KZN R506]
gi|306777310|ref|ZP_07415647.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu001]
gi|306785860|ref|ZP_07424182.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu003]
gi|306789901|ref|ZP_07428223.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu004]
gi|306794711|ref|ZP_07433013.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu005]
gi|306798954|ref|ZP_07437256.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu006]
gi|306969091|ref|ZP_07481752.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu009]
gi|306973427|ref|ZP_07486088.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu010]
gi|307081136|ref|ZP_07490306.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu011]
gi|307085740|ref|ZP_07494853.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu012]
gi|313659972|ref|ZP_07816852.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis KZN
V2475]
gi|54036987|sp|P63973|DNLJ_MYCTU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|54036988|sp|P63974|DNLJ_MYCBO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|166215822|sp|A1KN09|DNLJ_MYCBP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|166216214|sp|A5U726|DNLJ_MYCTA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254781375|sp|C1AGD0|DNLJ_MYCBT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|2791611|emb|CAA16099.1| PROBABLE DNA LIGASE [NAD DEPENDENT] LIGA (POLYDEOXYRIBONUCLEOTIDE
SYNTHASE [NAD+]) [Mycobacterium tuberculosis H37Rv]
gi|31619786|emb|CAD96726.1| PROBABLE DNA LIGASE [NAD DEPENDENT] LIGA (POLYDEOXYRIBONUCLEOTIDE
SYNTHASE [NAD+]) [Mycobacterium bovis AF2122/97]
gi|121494544|emb|CAL73025.1| Probable dna ligase [nad dependent] ligA [Mycobacterium bovis BCG
str. Pasteur 1173P2]
gi|134151162|gb|EBA43207.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis str.
Haarlem]
gi|148507017|gb|ABQ74826.1| DNA ligase (NAD dependent) LigA [Mycobacterium tuberculosis H37Ra]
gi|148722731|gb|ABR07356.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis F11]
gi|224774503|dbj|BAH27309.1| NAD-dependent DNA ligase [Mycobacterium bovis BCG str. Tokyo 172]
gi|289421646|gb|EFD18847.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis CPHL_A]
gi|289437828|gb|EFD20321.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis KZN 605]
gi|289540153|gb|EFD44731.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis K85]
gi|289544970|gb|EFD48618.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis T17]
gi|289695719|gb|EFD63148.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis EAS054]
gi|308214358|gb|EFO73757.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu001]
gi|308329532|gb|EFP18383.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu003]
gi|308333670|gb|EFP22521.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu004]
gi|308337029|gb|EFP25880.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu005]
gi|308340842|gb|EFP29693.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu006]
gi|308353381|gb|EFP42232.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu009]
gi|308357226|gb|EFP46077.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu010]
gi|308361179|gb|EFP50030.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu011]
gi|308364771|gb|EFP53622.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu012]
gi|323718395|gb|EGB27569.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis CDC1551A]
gi|326904628|gb|EGE51561.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis W-148]
gi|328457668|gb|AEB03091.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis KZN 4207]
Length = 691
Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 33/61 (54%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E + + + L + HQ YY D P+ +D +D + RL+AL+EQ PEL D P V
Sbjct: 12 EVLRQWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALEEQHPELRTPDSPTQLV 71
Query: 118 G 118
G
Sbjct: 72 G 72
>gi|290476106|ref|YP_003469005.1| DNA ligase [Xenorhabdus bovienii SS-2004]
gi|289175438|emb|CBJ82241.1| DNA ligase [Xenorhabdus bovienii SS-2004]
Length = 672
Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 58 EAMIE-VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
E++IE + L HH+ Y+ +D P D YDR+ L L+EQ PEL D P
Sbjct: 2 ESIIEKINKLRATLRHHEYLYHVMDAPEIPDAEYDRLLRELKVLEEQHPELITADSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|115379272|ref|ZP_01466385.1| DNA ligase [Stigmatella aurantiaca DW4/3-1]
gi|115363713|gb|EAU62835.1| DNA ligase [Stigmatella aurantiaca DW4/3-1]
Length = 443
Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 25/47 (53%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH YY LD+P +D YDR+ L L+ QFP L D P VG
Sbjct: 61 HHNHRYYVLDSPEVSDAEYDRLMRELQGLEAQFPALATPDSPTQRVG 107
>gi|11095423|gb|AAG29863.1|AF313764_6 DNA ligase [Zymomonas mobilis subsp. mobilis ZM4]
gi|49284|emb|CAA77966.1| DNA ligase [Zymomonas mobilis subsp. mobilis CP4]
gi|382210|prf||1819268B DNA ligase
Length = 731
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%)
Query: 53 SLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDH 112
+LS+ +A+IE+E L K+ H+ Y+ DNP D YD + R +++ FP+L D
Sbjct: 25 NLSREQAVIELERLAKLISHYDHLYHDKDNPAVPDSEYDALVLRNRRIEQFFPDLIRPDS 84
Query: 113 PWNTVG 118
P VG
Sbjct: 85 PSKKVG 90
>gi|215405001|ref|ZP_03417182.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis 02_1987]
gi|289746820|ref|ZP_06506198.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis 02_1987]
gi|289687348|gb|EFD54836.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis 02_1987]
Length = 691
Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 33/61 (54%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E + + + L + HQ YY D P+ +D +D + RL+AL+EQ PEL D P V
Sbjct: 12 EVLRQWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALEEQHPELRTPDSPTQLV 71
Query: 118 G 118
G
Sbjct: 72 G 72
>gi|209527955|ref|ZP_03276440.1| DNA ligase, NAD-dependent [Arthrospira maxima CS-328]
gi|209491614|gb|EDZ91984.1| DNA ligase, NAD-dependent [Arthrospira maxima CS-328]
Length = 680
Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 24/42 (57%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P DG+YDR+ L L+ Q+PEL D P VG
Sbjct: 31 YYVLDAPTMEDGVYDRLYRELQELETQYPELISPDSPTQRVG 72
>gi|307152955|ref|YP_003888339.1| NAD-dependent DNA ligase [Cyanothece sp. PCC 7822]
gi|306983183|gb|ADN15064.1| DNA ligase, NAD-dependent [Cyanothece sp. PCC 7822]
Length = 682
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 26/42 (61%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LDNP+ D +YD++ L+ L+ Q+PEL D P VG
Sbjct: 26 YYVLDNPIMEDAVYDQLYRELENLETQYPELITPDSPTQRVG 67
>gi|90416525|ref|ZP_01224456.1| DNA ligase, NAD-dependent [marine gamma proteobacterium HTCC2207]
gi|90331724|gb|EAS46952.1| DNA ligase, NAD-dependent [marine gamma proteobacterium HTCC2207]
Length = 677
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY LD P D YDR RL +++Q PEL +D P VG
Sbjct: 21 QHNHRYYVLDEPTIPDSEYDRSMRRLQDIEQQHPELLSDDSPSQRVG 67
>gi|56551260|ref|YP_162099.1| DNA ligase, NAD-dependent [Zymomonas mobilis subsp. mobilis ZM4]
gi|59802648|sp|P28719|DNLJ_ZYMMO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|56542834|gb|AAV88988.1| DNA ligase, NAD-dependent [Zymomonas mobilis subsp. mobilis ZM4]
Length = 731
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
LS+ +A+IE+E L K+ H+ Y+ DNP D YD + R +++ FP+L D P
Sbjct: 26 LSREQAVIELERLAKLISHYDHLYHDKDNPAVPDSEYDALVLRNRRIEQFFPDLIRPDSP 85
Query: 114 WNTVG 118
VG
Sbjct: 86 SKKVG 90
>gi|218754780|ref|ZP_03533576.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis GM 1503]
gi|289763195|ref|ZP_06522573.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis GM
1503]
gi|289710701|gb|EFD74717.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis GM
1503]
Length = 690
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 33/61 (54%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E + + + L + HQ YY D P+ +D +D + RL+AL+EQ PEL D P V
Sbjct: 12 EVLRQWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALEEQHPELRTPDSPTQLV 71
Query: 118 G 118
G
Sbjct: 72 G 72
>gi|268593162|ref|ZP_06127383.1| DNA ligase, NAD-dependent [Providencia rettgeri DSM 1131]
gi|291311208|gb|EFE51661.1| DNA ligase, NAD-dependent [Providencia rettgeri DSM 1131]
Length = 671
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 31/57 (54%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E++ L K HH+ Y+ LD P D YD++ +RL ++ Q PEL D P VG
Sbjct: 6 EIDELKKQLRHHEYQYHVLDAPEIPDVEYDKLMQRLKEIEAQHPELVTSDSPTQRVG 62
>gi|77360026|ref|YP_339601.1| NAD-dependent DNA ligase [Pseudoalteromonas haloplanktis TAC125]
gi|123730523|sp|Q3IKB8|DNLJ_PSEHT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|76874937|emb|CAI86158.1| NAD-dependent DNA ligase [Pseudoalteromonas haloplanktis TAC125]
Length = 673
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 29/57 (50%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ +L H YY LD P D YDR+ ++L AL+ Q PEL D P VG
Sbjct: 8 QINHLRSTLEQHSYNYYVLDTPSIPDAEYDRLLQQLSALETQHPELITADSPTQKVG 64
>gi|327399096|ref|YP_004339965.1| DNA ligase [Hippea maritima DSM 10411]
gi|327181725|gb|AEA33906.1| DNA ligase [Hippea maritima DSM 10411]
Length = 667
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 35/61 (57%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
EA +E L K +H YY LD+P+ +D YD + + L L+E +P+ +DE+ P V
Sbjct: 5 EAKERIEQLRKKLHYHNYRYYVLDDPIISDSEYDMMLKELKELEESYPQFYDENSPTVRV 64
Query: 118 G 118
G
Sbjct: 65 G 65
>gi|296046583|gb|ADG86433.1| NAD-dependent DNA ligase [Francisella novicida]
Length = 673
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 29/57 (50%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ +L H YY LD P D YDR+ ++L AL+ Q PEL D P VG
Sbjct: 8 QINHLRSTLEQHSYNYYVLDTPSIPDAEYDRLLQQLSALETQHPELITADSPTQKVG 64
>gi|116253034|ref|YP_768872.1| NAD-dependent DNA ligase LigA [Rhizobium leguminosarum bv. viciae
3841]
gi|123261370|sp|Q1ME47|DNLJ_RHIL3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|115257682|emb|CAK08780.1| putative DNA ligase [Rhizobium leguminosarum bv. viciae 3841]
Length = 718
Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 26/47 (55%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH Y+ D P +D YD + R DAL+ +FPEL ED P VG
Sbjct: 29 HHDALYHGKDQPEISDADYDALKRRNDALEVRFPELIREDSPSRHVG 75
>gi|260912664|ref|ZP_05919150.1| DNA ligase [Pasteurella dagmatis ATCC 43325]
gi|260633042|gb|EEX51207.1| DNA ligase [Pasteurella dagmatis ATCC 43325]
Length = 673
Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 31/57 (54%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E+E L K ++ Y+ LDNP D YDR+ +L L+ ++P+ ED P VG
Sbjct: 8 EMEQLRKTLRRYEYQYHVLDNPTVPDAEYDRLFHQLKKLEREYPQFITEDSPTQRVG 64
>gi|260904918|ref|ZP_05913240.1| DNA ligase, NAD-dependent [Brevibacterium linens BL2]
Length = 729
Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 27/42 (64%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY+ D+PL D YD + RL+ L+E+FPEL + P TVG
Sbjct: 40 YYKDDSPLVADAEYDDLVHRLEDLEEKFPELVTDSSPTQTVG 81
>gi|6561410|gb|AAF16907.1|AF173987_5 DNA ligase [Rhodothermus marinus DSM 4252]
Length = 154
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 29 TLEAKFLPNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDG 88
T EA+ L L + + + + ++ + EA L ++ H YY LDNPL D
Sbjct: 9 TAEARLLEATHTLLQTV-RQRDLEAIDRKEAEALAARLREVLNQHAYRYYVLDNPLIPDA 67
Query: 89 LYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YD + + L L+ +FPEL D P VG
Sbjct: 68 DYDLLMQALRKLEARFPELVTPDSPTQRVG 97
>gi|331695637|ref|YP_004331876.1| DNA ligase [Pseudonocardia dioxanivorans CB1190]
gi|326950326|gb|AEA24023.1| DNA ligase [Pseudonocardia dioxanivorans CB1190]
Length = 812
Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HQ YY LD P+ +DG +D + L AL+E++P+L D P VG
Sbjct: 40 HQFRYYVLDAPVVSDGQFDELWRELVALEERYPDLVSPDSPTQKVG 85
>gi|300743918|ref|ZP_07072938.1| DNA ligase, NAD-dependent [Rothia dentocariosa M567]
gi|300380279|gb|EFJ76842.1| DNA ligase, NAD-dependent [Rothia dentocariosa M567]
Length = 740
Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 39 RALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLD 98
RAL++ LD + ++T + E E+ ++ A H YY+ D P +D YDR+ RL+
Sbjct: 14 RALKA-LDSSAELTDTIRAE-YAELTDTIRAARHD---YYQADAPTLSDAEYDRLYRRLE 68
Query: 99 ALQEQFPELFDEDHPWNTVG 118
++ Q+P L D P VG
Sbjct: 69 QIEAQYPALIANDSPTQEVG 88
>gi|299771367|ref|YP_003733393.1| DNA ligase, NAD-dependent [Acinetobacter sp. DR1]
gi|298701455|gb|ADI92020.1| DNA ligase, NAD-dependent [Acinetobacter sp. DR1]
Length = 679
Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L+++ H YY +D P +D YD + +L AL+EQ+P+ D P VG
Sbjct: 9 QMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPDQVQSDSPTTKVG 65
>gi|52425821|ref|YP_088958.1| NAD-dependent DNA ligase LigA [Mannheimia succiniciproducens
MBEL55E]
gi|81386743|sp|Q65RN7|DNLJ_MANSM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|52307873|gb|AAU38373.1| Lig protein [Mannheimia succiniciproducens MBEL55E]
Length = 675
Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 32/57 (56%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L +H+ Y+ LD+P D YDR+ +L AL++Q PEL D P VG
Sbjct: 9 QIKQLRDTLRYHEYQYHVLDDPKIPDAEYDRLFHQLKALEQQHPELITADSPTQRVG 65
>gi|332982281|ref|YP_004463722.1| DNA ligase, NAD-dependent [Mahella australiensis 50-1 BON]
gi|332699959|gb|AEE96900.1| DNA ligase, NAD-dependent [Mahella australiensis 50-1 BON]
Length = 665
Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 30/56 (53%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
V L +I HH YY LD+P +D YD + L+ L+ ++PE+ D P VG
Sbjct: 11 VNELRQIIEHHNYMYYVLDSPEISDAEYDALMRELEQLESKYPEIITPDSPTQRVG 66
>gi|289522353|ref|ZP_06439207.1| DNA ligase, NAD-dependent [Anaerobaculum hydrogeniformans ATCC
BAA-1850]
gi|289504189|gb|EFD25353.1| DNA ligase, NAD-dependent [Anaerobaculum hydrogeniformans ATCC
BAA-1850]
Length = 674
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 32/62 (51%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
GEA E L K H +YY LD+P+ TD YD + L L+ +FPE+ D P
Sbjct: 6 GEAKKRAEELRKEIEKHNYYYYVLDSPVITDEEYDALYRGLVELERRFPEIITPDSPTQR 65
Query: 117 VG 118
VG
Sbjct: 66 VG 67
>gi|49474446|ref|YP_032488.1| NAD-dependent DNA ligase LigA [Bartonella quintana str. Toulouse]
gi|81646941|sp|Q6FZ81|DNLJ_BARQU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|49239950|emb|CAF26355.1| DNA ligase [Bartonella quintana str. Toulouse]
Length = 719
Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 46 DKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFP 105
D+ K +T+L EA E+E+L K H Y R D P +D YD + R ++ FP
Sbjct: 4 DEIKNLTAL---EAESELEWLAKEIARHDVLYNRDDQPEISDAEYDALRRRNAEIEALFP 60
Query: 106 ELFDEDHPWNTVG 118
EL D P + +G
Sbjct: 61 ELIRSDSPSHKIG 73
>gi|300114089|ref|YP_003760664.1| DNA ligase, NAD-dependent [Nitrosococcus watsonii C-113]
gi|299540026|gb|ADJ28343.1| DNA ligase, NAD-dependent [Nitrosococcus watsonii C-113]
Length = 675
Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 24/42 (57%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY +DNPL D YDR+ L L+E +PEL D P VG
Sbjct: 25 YYVMDNPLIPDSEYDRLIRELRVLEENYPELITLDSPTQRVG 66
>gi|332162521|ref|YP_004299098.1| NAD-dependent DNA ligase LigA [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|318606605|emb|CBY28103.1| DNA ligase [Yersinia enterocolitica subsp. palearctica Y11]
gi|325666751|gb|ADZ43395.1| NAD-dependent DNA ligase LigA [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330860741|emb|CBX71032.1| DNA ligase [Yersinia enterocolitica W22703]
Length = 672
Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 26/47 (55%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ LD P D YDR+ ++L L+ Q PEL D P VG
Sbjct: 17 HHEHLYHVLDAPEIPDAEYDRLMQQLRELEAQHPELITNDSPTQRVG 63
>gi|123441550|ref|YP_001005536.1| NAD-dependent DNA ligase LigA [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|166216254|sp|A1JLA4|DNLJ_YERE8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|122088511|emb|CAL11304.1| DNA ligase [Yersinia enterocolitica subsp. enterocolitica 8081]
Length = 672
Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 26/47 (55%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ LD P D YDR+ ++L L+ Q PEL D P VG
Sbjct: 17 HHEHLYHVLDAPEIPDAEYDRLMQQLRELEAQHPELITNDSPTQRVG 63
>gi|308377195|ref|ZP_07441467.2| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu008]
gi|13882885|gb|AAK47423.1| DNA ligase [Mycobacterium tuberculosis CDC1551]
gi|308348655|gb|EFP37506.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu008]
Length = 679
Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 27/46 (58%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HQ YY D P+ +D +D + RL+AL+EQ PEL D P VG
Sbjct: 15 HQFRYYVRDAPIISDAEFDELLRRLEALEEQHPELRTPDSPTQLVG 60
>gi|294085891|ref|YP_003552651.1| DNA ligase (NAD+) [Candidatus Puniceispirillum marinum IMCC1322]
gi|292665466|gb|ADE40567.1| DNA ligase (NAD+) [Candidatus Puniceispirillum marinum IMCC1322]
Length = 696
Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 52 TSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
+ +S +A E+ YL + +H + Y+ D P +D YD + R +AL+ FPEL D
Sbjct: 9 SKMSADDAAQELAYLAERIAYHDRKYHGEDAPDISDADYDMLVARNNALEASFPELIRPD 68
Query: 112 HPWNTVG 118
P VG
Sbjct: 69 SPSQRVG 75
>gi|126736446|ref|ZP_01752187.1| DNA ligase, NAD-dependent [Roseobacter sp. CCS2]
gi|126713984|gb|EBA10854.1| DNA ligase, NAD-dependent [Roseobacter sp. CCS2]
Length = 715
Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 35/68 (51%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V SLS +A E+ +L Y+R D P +D YD + R A++ QFP+L +
Sbjct: 17 VASLSPEQATKELSWLATQLNAANTAYHRDDAPDISDATYDALKRRNAAIEAQFPDLKRQ 76
Query: 111 DHPWNTVG 118
D P TVG
Sbjct: 77 DSPSETVG 84
>gi|325972726|ref|YP_004248917.1| DNA ligase, NAD-dependent [Spirochaeta sp. Buddy]
gi|324027964|gb|ADY14723.1| DNA ligase, NAD-dependent [Spirochaeta sp. Buddy]
Length = 696
Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/57 (42%), Positives = 33/57 (57%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E+ LV+ +QK YY + PL +D YDR+ +RL AL+ Q+P L D P VG
Sbjct: 7 EIHSLVEQLASYQKAYYVDNRPLVSDLEYDRLFDRLVALETQYPHLKLADSPTQRVG 63
>gi|311113170|ref|YP_003984392.1| NAD-dependent DNA ligase LigA [Rothia dentocariosa ATCC 17931]
gi|310944664|gb|ADP40958.1| NAD-dependent DNA ligase LigA [Rothia dentocariosa ATCC 17931]
Length = 740
Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 39 RALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLD 98
RAL++ LD + ++T + E E+ ++ A H YY+ D P +D YDR+ RL+
Sbjct: 14 RALKA-LDSSAELTDTIRAE-YAELTDTIRTARHD---YYQEDAPTLSDAEYDRLYRRLE 68
Query: 99 ALQEQFPELFDEDHPWNTVG 118
++ Q+P L D P VG
Sbjct: 69 QIEAQYPALIANDSPTQEVG 88
>gi|296285034|ref|ZP_06863032.1| DNA ligase [Citromicrobium bathyomarinum JL354]
Length = 733
Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 36/74 (48%)
Query: 46 DKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFP 105
D+ LS+ EA E+ L + H + Y+ D P TD YD + R +AL+ FP
Sbjct: 3 DQKDLAEPLSEAEAANELMRLARTIRKHNRLYHAEDAPEITDQEYDALVRRNEALEAAFP 62
Query: 106 ELFDEDHPWNTVGY 119
+L D P VG+
Sbjct: 63 DLVRPDSPSKGVGH 76
>gi|332705189|ref|ZP_08425270.1| DNA ligase, NAD-dependent [Lyngbya majuscula 3L]
gi|332355932|gb|EGJ35391.1| DNA ligase, NAD-dependent [Lyngbya majuscula 3L]
Length = 1092
Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LDNP+ D +YD++ L L+ ++PEL D P VG
Sbjct: 26 YYVLDNPIMADAIYDQLYRELQELETEYPELVTSDSPTQRVG 67
>gi|269138493|ref|YP_003295193.1| NAD-dependent DNA ligase [Edwardsiella tarda EIB202]
gi|267984153|gb|ACY83982.1| NAD-dependent DNA ligase [Edwardsiella tarda EIB202]
gi|304558517|gb|ADM41181.1| DNA ligase [Edwardsiella tarda FL6-60]
Length = 675
Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 29/57 (50%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++E L HH+ YY LD P TD YDR+ +L L+ + P L D P VG
Sbjct: 8 QLEQLRDALRHHEYQYYVLDEPQVTDAEYDRLMAQLKQLEAEHPALVTADSPSQRVG 64
>gi|238785571|ref|ZP_04629551.1| DNA ligase [Yersinia bercovieri ATCC 43970]
gi|238713506|gb|EEQ05538.1| DNA ligase [Yersinia bercovieri ATCC 43970]
Length = 670
Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 26/47 (55%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ LD P D YDR+ ++L L+ Q PEL D P VG
Sbjct: 17 HHEHQYHVLDAPEIPDAEYDRLMQQLRDLESQHPELITSDSPTQRVG 63
>gi|312870519|ref|ZP_07730638.1| DNA ligase (NAD+) [Lactobacillus oris PB013-T2-3]
gi|311093981|gb|EFQ52306.1| DNA ligase (NAD+) [Lactobacillus oris PB013-T2-3]
Length = 679
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 38/74 (51%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
+DK V L+ A E+ L + + + YY DNP D +YDR +RL L+++F
Sbjct: 1 MDKPTPVDQLTLAAAKQEIAPLREQLIKWGQEYYEQDNPSVEDYVYDRAYQRLVELEQRF 60
Query: 105 PELFDEDHPWNTVG 118
PEL D P VG
Sbjct: 61 PELKTSDSPTQHVG 74
>gi|294102358|ref|YP_003554216.1| DNA ligase, NAD-dependent [Aminobacterium colombiense DSM 12261]
gi|293617338|gb|ADE57492.1| DNA ligase, NAD-dependent [Aminobacterium colombiense DSM 12261]
Length = 684
Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 33/65 (50%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + EA+ +E L + H YY LD P D YD + L +L+E FPE D D P
Sbjct: 1 MDRREALQRIEALREEINRHAHLYYVLDTPEIADHEYDALFRELASLEEAFPEFDDPDSP 60
Query: 114 WNTVG 118
+ VG
Sbjct: 61 THRVG 65
>gi|319405996|emb|CBI79627.1| DNA ligase [Bartonella sp. AR 15-3]
Length = 718
Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
+ +L+ EA E+E+L K H Y+R D P +D YD + R + ++ FPEL
Sbjct: 6 IKNLTALEAEGELEWLAKEIARHDVLYHRDDQPEISDAEYDALRRRNEEIEALFPELVRV 65
Query: 111 DHPWNTVG 118
D P + +G
Sbjct: 66 DSPSSKIG 73
>gi|226327977|ref|ZP_03803495.1| hypothetical protein PROPEN_01868 [Proteus penneri ATCC 35198]
gi|225203681|gb|EEG86035.1| hypothetical protein PROPEN_01868 [Proteus penneri ATCC 35198]
Length = 505
Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L AL+ ++PEL D P VG
Sbjct: 18 HHEYLYHVMDAPEIPDAEYDRLMNELKALEAEYPELITSDSPTQRVG 64
>gi|281412160|ref|YP_003346239.1| DNA ligase, NAD-dependent [Thermotoga naphthophila RKU-10]
gi|281373263|gb|ADA66825.1| DNA ligase, NAD-dependent [Thermotoga naphthophila RKU-10]
Length = 688
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E + EVE L + +H YY L++P+ TD YD++ RL L+ +PEL D P V
Sbjct: 9 EVIEEVERLREEIEYHNYRYYVLNDPVITDEEYDKLMRRLIELERMYPELVTPDSPTQRV 68
Query: 118 G 118
G
Sbjct: 69 G 69
>gi|148269959|ref|YP_001244419.1| DNA ligase, NAD-dependent [Thermotoga petrophila RKU-1]
gi|170288644|ref|YP_001738882.1| DNA ligase, NAD-dependent [Thermotoga sp. RQ2]
gi|190359298|sp|A5IKX0|DNLJ_THEP1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254781442|sp|B1LA51|DNLJ_THESQ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|147735503|gb|ABQ46843.1| DNA ligase, NAD-dependent [Thermotoga petrophila RKU-1]
gi|170176147|gb|ACB09199.1| DNA ligase, NAD-dependent [Thermotoga sp. RQ2]
Length = 688
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E + EVE L + +H YY L++P+ TD YD++ RL L+ +PEL D P V
Sbjct: 9 EVIEEVERLREEIEYHNYRYYVLNDPVITDEEYDKLMRRLIELERMYPELVTPDSPTQRV 68
Query: 118 G 118
G
Sbjct: 69 G 69
>gi|332290231|ref|YP_004421083.1| NAD-dependent DNA ligase LigA [Gallibacterium anatis UMN179]
gi|330433127|gb|AEC18186.1| NAD-dependent DNA ligase LigA [Gallibacterium anatis UMN179]
Length = 671
Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 31/56 (55%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+E L +H+ Y+ LDNP+ D YDR+ +L L+ + PEL +D P VG
Sbjct: 8 IEQLRNDLRYHEYQYHVLDNPVIPDAEYDRMMNQLKRLEAEHPELITDDSPTQRVG 63
>gi|295401729|ref|ZP_06811695.1| DNA ligase, NAD-dependent [Geobacillus thermoglucosidasius
C56-YS93]
gi|294976216|gb|EFG51828.1| DNA ligase, NAD-dependent [Geobacillus thermoglucosidasius
C56-YS93]
Length = 670
Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 36/65 (55%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + A+ +E L ++ + YY LD P D YDR+ + L AL+EQ+P+L +D P
Sbjct: 1 MERQAAIKRIEELRELLNQYNYEYYVLDRPSVPDSEYDRLMQELIALEEQYPDLKTKDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SQRVG 65
>gi|226305867|ref|YP_002765827.1| NAD(+)-dependent DNA ligase [Rhodococcus erythropolis PR4]
gi|254781402|sp|C0ZXK3|DNLJ_RHOE4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|226184984|dbj|BAH33088.1| NAD(+)-dependent DNA ligase [Rhodococcus erythropolis PR4]
Length = 700
Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HQ YY D P+ +DG +D + +L+AL+EQ+P+L D P VG
Sbjct: 28 QHQFRYYVRDAPVISDGAFDTLLGQLNALEEQYPDLRTPDSPTQLVG 74
>gi|315445158|ref|YP_004078037.1| DNA ligase, NAD-dependent [Mycobacterium sp. Spyr1]
gi|315263461|gb|ADU00203.1| DNA ligase, NAD-dependent [Mycobacterium sp. Spyr1]
Length = 701
Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HQ YY D P+ TD +D++ RL AL++++PEL D P VG
Sbjct: 28 HQFRYYIRDAPIITDAEFDQLLRRLQALEDEYPELRTPDSPTQLVG 73
>gi|312112463|ref|YP_003990779.1| DNA ligase, NAD-dependent [Geobacillus sp. Y4.1MC1]
gi|311217564|gb|ADP76168.1| DNA ligase, NAD-dependent [Geobacillus sp. Y4.1MC1]
Length = 670
Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 36/65 (55%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + A+ +E L ++ + YY LD P D YDR+ + L AL+EQ+P+L +D P
Sbjct: 1 MERQAAIKRIEELRELLNQYNYEYYVLDRPSVPDSEYDRLMQELIALEEQYPDLKTKDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SQRVG 65
>gi|238759468|ref|ZP_04620632.1| DNA ligase [Yersinia aldovae ATCC 35236]
gi|238702365|gb|EEP94918.1| DNA ligase [Yersinia aldovae ATCC 35236]
Length = 670
Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 26/47 (55%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ LD P D YDR+ ++L L+ Q PEL D P VG
Sbjct: 17 HHEHLYHVLDAPEIPDAEYDRLMQQLRELEAQHPELVTNDSPTQRVG 63
>gi|145224827|ref|YP_001135505.1| NAD-dependent DNA ligase LigA [Mycobacterium gilvum PYR-GCK]
gi|190359265|sp|A4TDZ8|DNLJ_MYCGI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|145217313|gb|ABP46717.1| DNA ligase, NAD-dependent [Mycobacterium gilvum PYR-GCK]
Length = 712
Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HQ YY D P+ TD +D++ RL AL++++PEL D P VG
Sbjct: 39 HQFRYYIRDAPIITDAEFDQLLRRLQALEDEYPELRTPDSPTQLVG 84
>gi|315223028|ref|ZP_07864907.1| DNA ligase, NAD-dependent [Streptococcus anginosus F0211]
gi|315187978|gb|EFU21714.1| DNA ligase, NAD-dependent [Streptococcus anginosus F0211]
Length = 652
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LVK+ + YY DNP +D YDR+ L L++Q+PEL D P + VG
Sbjct: 8 LVKLLNQYAHEYYTTDNPTVSDSEYDRLYHELLDLEQQYPELVQADSPTHRVG 60
>gi|149915267|ref|ZP_01903795.1| DNA ligase, NAD-dependent [Roseobacter sp. AzwK-3b]
gi|149810988|gb|EDM70827.1| DNA ligase, NAD-dependent [Roseobacter sp. AzwK-3b]
Length = 720
Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 36/71 (50%)
Query: 49 KKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF 108
+ V LS +A E+ L + Y+ D P+ +D YD + +R A++ +FP+L
Sbjct: 16 RPVDKLSADQAAQELARLADLVAQADAAYHGQDAPIMSDAAYDALVQRNAAIEARFPDLM 75
Query: 109 DEDHPWNTVGY 119
ED P VG+
Sbjct: 76 REDSPSRRVGF 86
>gi|77165170|ref|YP_343695.1| DNA ligase (NAD+) [Nitrosococcus oceani ATCC 19707]
gi|254433594|ref|ZP_05047102.1| DNA ligase, NAD-dependent [Nitrosococcus oceani AFC27]
gi|123730661|sp|Q3JAI1|DNLJ_NITOC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|76883484|gb|ABA58165.1| DNA ligase (NAD+) [Nitrosococcus oceani ATCC 19707]
gi|207089927|gb|EDZ67198.1| DNA ligase, NAD-dependent [Nitrosococcus oceani AFC27]
Length = 675
Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 25/42 (59%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY ++NPL D YDR+ L AL+E +PEL D P VG
Sbjct: 25 YYVVNNPLVPDSEYDRLIRELQALEENYPELITLDSPTQRVG 66
>gi|229493359|ref|ZP_04387148.1| DNA ligase, NAD-dependent [Rhodococcus erythropolis SK121]
gi|229319675|gb|EEN85507.1| DNA ligase, NAD-dependent [Rhodococcus erythropolis SK121]
Length = 700
Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HQ YY D P+ +DG +D + +L+AL+EQ+P+L D P VG
Sbjct: 28 QHQFRYYVRDAPVISDGAFDTLLGQLNALEEQYPDLRTPDSPTQLVG 74
>gi|193212122|ref|YP_001998075.1| DNA ligase, NAD-dependent [Chlorobaculum parvum NCIB 8327]
gi|254781284|sp|B3QLI5|DNLJ_CHLP8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|193085599|gb|ACF10875.1| DNA ligase, NAD-dependent [Chlorobaculum parvum NCIB 8327]
Length = 674
Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
+DKAK + K A IE H + YY P +D +D++ ERL AL+ +F
Sbjct: 1 MDKAKAQQEIGKLRAEIE---------RHNRLYYLEAKPEISDFEFDKLLERLIALETEF 51
Query: 105 PELFDEDHPWNTVG 118
PEL D P VG
Sbjct: 52 PELVTPDSPSQRVG 65
>gi|260662792|ref|ZP_05863686.1| DNA ligase, NAD-dependent [Lactobacillus fermentum 28-3-CHN]
gi|260552873|gb|EEX25872.1| DNA ligase, NAD-dependent [Lactobacillus fermentum 28-3-CHN]
Length = 679
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKW---YYRLDNPLFTDGLYDRVSERLDALQ 101
+ K + V+ L+K +A E L + +KW YY DNP D +YDR +RL ++
Sbjct: 1 MSKQEAVSELTKQQAQAE---LTPLREQLKKWGAEYYEQDNPSVEDYVYDRAYQRLVEIE 57
Query: 102 EQFPELFDEDHPWNTVG 118
++FP+L D P VG
Sbjct: 58 QRFPDLVVPDSPTQRVG 74
>gi|238765534|ref|ZP_04626449.1| DNA ligase [Yersinia kristensenii ATCC 33638]
gi|238696249|gb|EEP89051.1| DNA ligase [Yersinia kristensenii ATCC 33638]
Length = 670
Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 26/47 (55%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ LD P D YDR+ ++L L+ Q PEL D P VG
Sbjct: 17 HHEHQYHVLDAPEIPDAEYDRLMQQLRDLEAQHPELITNDSPTQRVG 63
>gi|88861394|ref|ZP_01136024.1| NAD-dependent DNA ligase [Pseudoalteromonas tunicata D2]
gi|88816660|gb|EAR26485.1| NAD-dependent DNA ligase [Pseudoalteromonas tunicata D2]
Length = 673
Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 67 VKIALHHQKW-YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+K+ L + YY LDNP D YDRV L AL+ Q+P+ D P VG
Sbjct: 12 LKVQLEEYNYQYYVLDNPSVPDSEYDRVMRELIALETQYPQFLSADSPSQKVG 64
>gi|238790828|ref|ZP_04634584.1| DNA ligase [Yersinia frederiksenii ATCC 33641]
gi|238721075|gb|EEQ12759.1| DNA ligase [Yersinia frederiksenii ATCC 33641]
Length = 670
Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 26/47 (55%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ LD P D YDR+ ++L L+ Q PEL D P VG
Sbjct: 17 HHEHQYHVLDAPEIPDAEYDRLMQQLRDLEAQHPELITNDSPTQRVG 63
>gi|299783520|gb|ADJ41518.1| DNA ligase, NAD-dependent [Lactobacillus fermentum CECT 5716]
Length = 679
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKW---YYRLDNPLFTDGLYDRVSERLDALQ 101
+ K + V+ L+K +A E L + +KW YY DNP D +YDR +RL ++
Sbjct: 1 MSKQEAVSELTKQQAQAE---LTPLREQLKKWGAEYYEQDNPSVEDYVYDRAYQRLVEIE 57
Query: 102 EQFPELFDEDHPWNTVG 118
++FP+L D P VG
Sbjct: 58 QRFPDLVVPDSPTQRVG 74
>gi|238799224|ref|ZP_04642672.1| DNA ligase [Yersinia mollaretii ATCC 43969]
gi|238716921|gb|EEQ08789.1| DNA ligase [Yersinia mollaretii ATCC 43969]
Length = 670
Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 26/47 (55%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ LD P D YDR+ ++L L+ Q PEL D P VG
Sbjct: 17 HHEHQYHVLDAPEIPDAEYDRLMQQLRDLEAQHPELITSDSPTQRVG 63
>gi|184155951|ref|YP_001844291.1| NAD-dependent DNA ligase [Lactobacillus fermentum IFO 3956]
gi|254781353|sp|B2GDS9|DNLJ_LACF3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|183227295|dbj|BAG27811.1| NAD-dependent DNA ligase [Lactobacillus fermentum IFO 3956]
Length = 679
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKW---YYRLDNPLFTDGLYDRVSERLDALQ 101
+ K + V+ L+K +A E L + +KW YY DNP D +YDR +RL ++
Sbjct: 1 MSKQEAVSELTKQQAQAE---LTPLREQLKKWGAEYYEQDNPSVEDYVYDRAYQRLVEIE 57
Query: 102 EQFPELFDEDHPWNTVG 118
++FP+L D P VG
Sbjct: 58 QRFPDLVVPDSPTQRVG 74
>gi|239825842|ref|YP_002948466.1| NAD-dependent DNA ligase LigA [Geobacillus sp. WCH70]
gi|239806135|gb|ACS23200.1| DNA ligase, NAD-dependent [Geobacillus sp. WCH70]
Length = 670
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + AM +E L ++ + YY LD P D YDR+ + L AL+EQ+P+L +D P
Sbjct: 1 MDRQAAMKRIEELRELLNKYNYEYYVLDRPSVPDAEYDRLMQELIALEEQYPDLKTKDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SQRVG 65
>gi|114767408|ref|ZP_01446210.1| DNA ligase, NAD-dependent [Pelagibaca bermudensis HTCC2601]
gi|114540493|gb|EAU43572.1| DNA ligase, NAD-dependent [Roseovarius sp. HTCC2601]
Length = 757
Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 36/68 (52%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V +LS+ +A E+E L + Y+ D P +D YD + R A++E+FPEL E
Sbjct: 15 VEALSEDQARAELERLAGLLAQANLAYHTEDAPEISDADYDALKRRNVAIEERFPELKRE 74
Query: 111 DHPWNTVG 118
D P VG
Sbjct: 75 DSPSEQVG 82
>gi|255658313|ref|ZP_05403722.1| DNA ligase, NAD-dependent [Mitsuokella multacida DSM 20544]
gi|260849632|gb|EEX69639.1| DNA ligase, NAD-dependent [Mitsuokella multacida DSM 20544]
Length = 675
Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 32/57 (56%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E+ L K +H YY DNP +D YD++ RL A++ ++PEL ++ P VG
Sbjct: 16 ELTELRKTIRYHNNRYYNEDNPEISDYEYDQLMLRLKAIEAKYPELITKNSPTQVVG 72
>gi|288554984|ref|YP_003426919.1| NAD-dependent DNA ligase LigA [Bacillus pseudofirmus OF4]
gi|288546144|gb|ADC50027.1| NAD-dependent DNA ligase LigA [Bacillus pseudofirmus OF4]
Length = 668
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 26/42 (61%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD PL TD YD++ + L AL+ + PEL ED P VG
Sbjct: 24 YYVLDQPLVTDAEYDQLMQELIALEGEHPELVSEDSPSVRVG 65
>gi|222149123|ref|YP_002550080.1| NAD-dependent DNA ligase LigA [Agrobacterium vitis S4]
gi|254781248|sp|B9JY41|DNLJ_AGRVS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|221736108|gb|ACM37071.1| DNA ligase [Agrobacterium vitis S4]
Length = 719
Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 33/68 (48%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V LS+ +A E+ L HH Y+ D P +D YD + R DA++ +FP L
Sbjct: 8 VEDLSEEQAGQELIRLAAAIAHHDALYHGKDQPEISDADYDALKRRNDAIEARFPTLVRS 67
Query: 111 DHPWNTVG 118
D P VG
Sbjct: 68 DSPSQRVG 75
>gi|49475845|ref|YP_033886.1| NAD-dependent DNA ligase LigA [Bartonella henselae str. Houston-1]
gi|81647763|sp|Q6G2R5|DNLJ_BARHE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|49238653|emb|CAF27899.1| DNA ligase [Bartonella henselae str. Houston-1]
Length = 716
Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 35/69 (50%)
Query: 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
++ +L+ EA E+E+L K H Y R D P +D YD + R ++ FPEL
Sbjct: 5 EIQNLTALEAASELEWLAKEITRHDVLYNRNDQPEISDAEYDALRRRNAEIEALFPELIR 64
Query: 110 EDHPWNTVG 118
D P + +G
Sbjct: 65 PDSPSHKIG 73
>gi|116494557|ref|YP_806291.1| NAD-dependent DNA ligase [Lactobacillus casei ATCC 334]
gi|122264017|sp|Q03AC3|DNLJ_LACC3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|116104707|gb|ABJ69849.1| NAD-dependent DNA ligase [Lactobacillus casei ATCC 334]
Length = 674
Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 33/71 (46%)
Query: 48 AKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
AK + EA EVE L K + YY D P TD +YD L AL+E +P+L
Sbjct: 3 AKPAAQFTLEEAQAEVEKLRKQLNQWRLEYYTKDAPTVTDNVYDDHYRDLQALEEAYPKL 62
Query: 108 FDEDHPWNTVG 118
D P VG
Sbjct: 63 VTPDSPTQEVG 73
>gi|301066103|ref|YP_003788126.1| NAD-dependent DNA ligase [Lactobacillus casei str. Zhang]
gi|300438510|gb|ADK18276.1| NAD-dependent DNA ligase [Lactobacillus casei str. Zhang]
Length = 674
Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 33/71 (46%)
Query: 48 AKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
AK + EA EVE L K + YY D P TD +YD L AL+E +P+L
Sbjct: 3 AKPAAQFTLEEAQAEVEKLRKQLNQWRLEYYTKDAPTVTDNVYDDHYRDLQALEEAYPKL 62
Query: 108 FDEDHPWNTVG 118
D P VG
Sbjct: 63 VTPDSPTQEVG 73
>gi|294677201|ref|YP_003577816.1| DNA ligase [Rhodobacter capsulatus SB 1003]
gi|294476021|gb|ADE85409.1| DNA ligase (NAD(+)) [Rhodobacter capsulatus SB 1003]
Length = 707
Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 34/66 (51%)
Query: 53 SLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDH 112
SL++ EA EV LV Y+ LD P +D YD + RL A++ +FP+L D
Sbjct: 12 SLTRAEAEAEVPELVARIEAANHAYHTLDAPKISDADYDALKRRLAAIEARFPDLARADS 71
Query: 113 PWNTVG 118
P VG
Sbjct: 72 PTMRVG 77
>gi|239631844|ref|ZP_04674875.1| NAD-dependent DNA ligase [Lactobacillus paracasei subsp. paracasei
8700:2]
gi|239526309|gb|EEQ65310.1| NAD-dependent DNA ligase [Lactobacillus paracasei subsp. paracasei
8700:2]
Length = 674
Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 33/71 (46%)
Query: 48 AKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
AK + EA EVE L K + YY D P TD +YD L AL+E +P+L
Sbjct: 3 AKPAAQFTLEEAQAEVEKLRKQLNQWRLEYYTKDAPTVTDNVYDDHYRDLQALEEAYPKL 62
Query: 108 FDEDHPWNTVG 118
D P VG
Sbjct: 63 VTPDSPTQEVG 73
>gi|191637997|ref|YP_001987163.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Lactobacillus
casei BL23]
gi|254781352|sp|B3WD54|DNLJ_LACCB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|190712299|emb|CAQ66305.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Lactobacillus
casei BL23]
gi|327382073|gb|AEA53549.1| DNA ligase [Lactobacillus casei LC2W]
gi|327385217|gb|AEA56691.1| DNA ligase [Lactobacillus casei BD-II]
Length = 674
Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 33/71 (46%)
Query: 48 AKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
AK + EA EVE L K + YY D P TD +YD L AL+E +P+L
Sbjct: 3 AKPAAQFTLEEAQAEVEKLRKQLNQWRLEYYTKDAPTVTDNVYDDHYRDLQALEEAYPKL 62
Query: 108 FDEDHPWNTVG 118
D P VG
Sbjct: 63 VTPDSPTQEVG 73
>gi|292491548|ref|YP_003526987.1| DNA ligase, NAD-dependent [Nitrosococcus halophilus Nc4]
gi|291580143|gb|ADE14600.1| DNA ligase, NAD-dependent [Nitrosococcus halophilus Nc4]
Length = 675
Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 33/64 (51%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
+ +A VE L K+ + YY LD+P+ D YDR+ L L+ Q+PEL D P
Sbjct: 3 ATAQARERVETLRKLINDYNYNYYVLDSPVVPDSEYDRLMRELQNLEAQYPELVVPDSPT 62
Query: 115 NTVG 118
VG
Sbjct: 63 QRVG 66
>gi|225018630|ref|ZP_03707822.1| hypothetical protein CLOSTMETH_02580 [Clostridium methylpentosum
DSM 5476]
gi|224948624|gb|EEG29833.1| hypothetical protein CLOSTMETH_02580 [Clostridium methylpentosum
DSM 5476]
Length = 659
Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 35/65 (53%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K +A + V L K +H YY LD+P +D YD + L+ L+ +FPEL ++ P
Sbjct: 1 MDKKDAQLRVAELTKQLHYHSHRYYVLDDPEISDFDYDAMLRELETLEAEFPELRSDNSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TVRVG 65
>gi|206895761|ref|YP_002246502.1| DNA ligase, NAD-dependent [Coprothermobacter proteolyticus DSM
5265]
gi|254781298|sp|B5Y6V5|DNLJ_COPPD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|206738378|gb|ACI17456.1| DNA ligase, NAD-dependent [Coprothermobacter proteolyticus DSM
5265]
Length = 666
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+++ EA +E L ++ +H YY LD+P +D YD++ L L++QFPE D P
Sbjct: 1 MTREEAKKRIERLRELIEYHNYRYYVLDSPEISDEEYDKLYRELVTLEKQFPEFITPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|294504743|ref|YP_003568805.1| DNA ligase [Yersinia pestis Z176003]
gi|262362805|gb|ACY59526.1| DNA ligase [Yersinia pestis D106004]
gi|262366729|gb|ACY63286.1| DNA ligase [Yersinia pestis D182038]
gi|294355202|gb|ADE65543.1| DNA ligase [Yersinia pestis Z176003]
Length = 656
Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 26/47 (55%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ LD P D YDR+ ++L L+ Q PEL D P VG
Sbjct: 3 HHEHQYHVLDAPEIPDAEYDRMMQQLRDLEAQHPELVTNDSPTQRVG 49
>gi|83590843|ref|YP_430852.1| DNA ligase, NAD-dependent [Moorella thermoacetica ATCC 39073]
gi|123739230|sp|Q2RGY0|DNLJ_MOOTA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|83573757|gb|ABC20309.1| DNA ligase, NAD-dependent [Moorella thermoacetica ATCC 39073]
Length = 666
Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 30/56 (53%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
VE L ++ H YY LD P +D YD + + L AL+E +PEL D P VG
Sbjct: 10 VEELRRLIEEHNYRYYVLDQPSISDREYDALMQELIALEEAYPELRTPDSPSQRVG 65
>gi|51597030|ref|YP_071221.1| NAD-dependent DNA ligase LigA [Yersinia pseudotuberculosis IP
32953]
gi|186896113|ref|YP_001873225.1| NAD-dependent DNA ligase LigA [Yersinia pseudotuberculosis PB1/+]
gi|81638946|sp|Q668M6|DNLJ_YERPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254781913|sp|B2K917|DNLJ_YERPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|51590312|emb|CAH21949.1| DNA ligase [Yersinia pseudotuberculosis IP 32953]
gi|186699139|gb|ACC89768.1| DNA ligase, NAD-dependent [Yersinia pseudotuberculosis PB1/+]
Length = 670
Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 26/47 (55%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ LD P D YDR+ ++L L+ Q PEL D P VG
Sbjct: 17 HHEHQYHVLDAPEIPDAEYDRMMQQLRDLEAQHPELVTNDSPTQRVG 63
>gi|153948204|ref|YP_001400300.1| NAD-dependent DNA ligase LigA [Yersinia pseudotuberculosis IP
31758]
gi|170023674|ref|YP_001720179.1| NAD-dependent DNA ligase LigA [Yersinia pseudotuberculosis YPIII]
gi|190359300|sp|A7FGC2|DNLJ_YERP3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254781915|sp|B1JFZ0|DNLJ_YERPY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|152959699|gb|ABS47160.1| DNA ligase, NAD-dependent [Yersinia pseudotuberculosis IP 31758]
gi|169750208|gb|ACA67726.1| DNA ligase, NAD-dependent [Yersinia pseudotuberculosis YPIII]
Length = 670
Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 26/47 (55%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ LD P D YDR+ ++L L+ Q PEL D P VG
Sbjct: 17 HHEHQYHVLDAPEIPDAEYDRMMQQLRDLEAQHPELVTNDSPTQRVG 63
>gi|22125389|ref|NP_668812.1| NAD-dependent DNA ligase LigA [Yersinia pestis KIM 10]
gi|45442391|ref|NP_993930.1| NAD-dependent DNA ligase LigA [Yersinia pestis biovar Microtus str.
91001]
gi|108808172|ref|YP_652088.1| NAD-dependent DNA ligase LigA [Yersinia pestis Antiqua]
gi|108811556|ref|YP_647323.1| NAD-dependent DNA ligase LigA [Yersinia pestis Nepal516]
gi|145599373|ref|YP_001163449.1| NAD-dependent DNA ligase LigA [Yersinia pestis Pestoides F]
gi|149365146|ref|ZP_01887181.1| DNA ligase [Yersinia pestis CA88-4125]
gi|162420672|ref|YP_001607138.1| NAD-dependent DNA ligase LigA [Yersinia pestis Angola]
gi|165926903|ref|ZP_02222735.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str.
F1991016]
gi|165940356|ref|ZP_02228875.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str.
IP275]
gi|166011271|ref|ZP_02232169.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166212520|ref|ZP_02238555.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str.
B42003004]
gi|167398917|ref|ZP_02304441.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167421338|ref|ZP_02313091.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167424444|ref|ZP_02316197.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|167470665|ref|ZP_02335369.1| DNA ligase, NAD-dependent [Yersinia pestis FV-1]
gi|218930038|ref|YP_002347913.1| NAD-dependent DNA ligase LigA [Yersinia pestis CO92]
gi|229838581|ref|ZP_04458740.1| DNA ligase, NAD(+)-dependent [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229895648|ref|ZP_04510819.1| DNA ligase, NAD(+)-dependent [Yersinia pestis Pestoides A]
gi|229899147|ref|ZP_04514290.1| DNA ligase, NAD(+)-dependent [Yersinia pestis biovar Orientalis
str. India 195]
gi|229901826|ref|ZP_04516947.1| DNA ligase, NAD(+)-dependent [Yersinia pestis Nepal516]
gi|270490015|ref|ZP_06207089.1| DNA ligase (NAD(+)) [Yersinia pestis KIM D27]
gi|122980211|sp|Q1CJV7|DNLJ_YERPN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|123372308|sp|Q1C5X9|DNLJ_YERPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|123776939|sp|Q7CJF3|DNLJ_YERPE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|166216255|sp|A4TMG4|DNLJ_YERPP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254781914|sp|A9QZH0|DNLJ_YERPG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|21958274|gb|AAM85063.1|AE013752_4 DNA ligase [Yersinia pestis KIM 10]
gi|45437255|gb|AAS62807.1| DNA ligase [Yersinia pestis biovar Microtus str. 91001]
gi|108775204|gb|ABG17723.1| DNA ligase [Yersinia pestis Nepal516]
gi|108780085|gb|ABG14143.1| DNA ligase [Yersinia pestis Antiqua]
gi|115348649|emb|CAL21593.1| DNA ligase [Yersinia pestis CO92]
gi|145211069|gb|ABP40476.1| DNA ligase [Yersinia pestis Pestoides F]
gi|149291559|gb|EDM41633.1| DNA ligase [Yersinia pestis CA88-4125]
gi|162353487|gb|ABX87435.1| DNA ligase, NAD-dependent [Yersinia pestis Angola]
gi|165911711|gb|EDR30369.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str.
IP275]
gi|165921254|gb|EDR38478.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str.
F1991016]
gi|165989949|gb|EDR42250.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166206451|gb|EDR50931.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str.
B42003004]
gi|166960827|gb|EDR56848.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167051421|gb|EDR62829.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167056326|gb|EDR66095.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|229680722|gb|EEO76817.1| DNA ligase, NAD(+)-dependent [Yersinia pestis Nepal516]
gi|229687549|gb|EEO79622.1| DNA ligase, NAD(+)-dependent [Yersinia pestis biovar Orientalis
str. India 195]
gi|229694947|gb|EEO84994.1| DNA ligase, NAD(+)-dependent [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229701454|gb|EEO89482.1| DNA ligase, NAD(+)-dependent [Yersinia pestis Pestoides A]
gi|270338519|gb|EFA49296.1| DNA ligase (NAD(+)) [Yersinia pestis KIM D27]
Length = 670
Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 26/47 (55%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ LD P D YDR+ ++L L+ Q PEL D P VG
Sbjct: 17 HHEHQYHVLDAPEIPDAEYDRMMQQLRDLEAQHPELVTNDSPTQRVG 63
>gi|320014458|gb|ADV98029.1| DNA ligase, NAD(+)-dependent [Yersinia pestis biovar Medievalis
str. Harbin 35]
Length = 670
Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 26/47 (55%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ LD P D YDR+ ++L L+ Q PEL D P VG
Sbjct: 17 HHEHQYHVLDAPEIPDAEYDRMMQQLRDLEAQHPELVTNDSPTQRVG 63
>gi|78043193|ref|YP_359946.1| DNA ligase, NAD-dependent [Carboxydothermus hydrogenoformans
Z-2901]
gi|123743192|sp|Q3AD38|DNLJ_CARHZ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|77995308|gb|ABB14207.1| DNA ligase, NAD-dependent [Carboxydothermus hydrogenoformans
Z-2901]
Length = 664
Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 30/56 (53%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+E L + +H YY LD P +D YDR+ L +L++Q+PE D P VG
Sbjct: 10 IEELRALLHYHNYRYYVLDQPEISDAEYDRMLRELISLEQQYPEFITPDSPSQRVG 65
>gi|307718507|ref|YP_003874039.1| DNA ligase [Spirochaeta thermophila DSM 6192]
gi|306532232|gb|ADN01766.1| DNA ligase [Spirochaeta thermophila DSM 6192]
Length = 673
Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 34/65 (52%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+++ EA E++ LV++ YY L P TD YD + +RL L+ QFP L D P
Sbjct: 1 MTEQEAKKEIDRLVELLQRADYEYYVLGRPHLTDQEYDSLFDRLKTLEAQFPHLKRADSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|89094416|ref|ZP_01167356.1| DNA ligase [Oceanospirillum sp. MED92]
gi|89081308|gb|EAR60540.1| DNA ligase [Oceanospirillum sp. MED92]
Length = 674
Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH YY LD+P D YDR+ L L+ PEL ED P VG
Sbjct: 16 HHNYQYYVLDDPEVPDAEYDRLFRELKKLESDNPELITEDSPTQRVG 62
>gi|330808456|ref|YP_004352918.1| DNA ligase (NAD(+)) [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327376564|gb|AEA67914.1| DNA ligase (NAD(+)) [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 785
Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H Y+ LD P D YDR+ L AL+EQ PEL D P VG
Sbjct: 17 QHNYRYHVLDEPSIPDAEYDRLFHELKALEEQHPELVTSDSPTQRVG 63
>gi|312173113|emb|CBX81368.1| DNA ligase [Erwinia amylovora ATCC BAA-2158]
Length = 670
Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ +L + H++ Y+ LD P D YDR+ L L+ Q+PEL D P VG
Sbjct: 7 KITHLRTLLRHYEHQYHVLDAPTVPDAEYDRLMGELRELETQYPELLTSDSPTQRVG 63
>gi|292488952|ref|YP_003531839.1| DNA ligase [Erwinia amylovora CFBP1430]
gi|292900089|ref|YP_003539458.1| DNA ligase [Erwinia amylovora ATCC 49946]
gi|291199937|emb|CBJ47061.1| DNA ligase [Erwinia amylovora ATCC 49946]
gi|291554386|emb|CBA21816.1| DNA ligase [Erwinia amylovora CFBP1430]
Length = 670
Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ +L + H++ Y+ LD P D YDR+ L L+ Q+PEL D P VG
Sbjct: 7 KITHLRTLLRHYEHQYHVLDAPTVPDAEYDRLMGELRELETQYPELLTSDSPTQRVG 63
>gi|300724062|ref|YP_003713378.1| DNA ligase [Xenorhabdus nematophila ATCC 19061]
gi|297630595|emb|CBJ91260.1| DNA ligase [Xenorhabdus nematophila ATCC 19061]
Length = 658
Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 25/47 (53%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L AL+EQ PE D P +G
Sbjct: 3 HHEYLYHVMDAPEIPDAEYDRLMRELKALEEQHPEWVTADSPTQRIG 49
>gi|304312656|ref|YP_003812254.1| DNA ligase, NAD-dependent [gamma proteobacterium HdN1]
gi|301798389|emb|CBL46613.1| DNA ligase, NAD-dependent [gamma proteobacterium HdN1]
Length = 677
Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY LD+P D YDR+ +RL AL++ P+L +D P VG
Sbjct: 22 HNYRYYVLDDPSVPDSEYDRLFQRLLALEQAHPDLITQDSPTQRVG 67
>gi|296140594|ref|YP_003647837.1| DNA ligase, NAD-dependent [Tsukamurella paurometabola DSM 20162]
gi|296028728|gb|ADG79498.1| DNA ligase, NAD-dependent [Tsukamurella paurometabola DSM 20162]
Length = 688
Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HQ YY D P+ +DG +D + +RL A+++ FPEL D P VG
Sbjct: 23 HQFRYYVQDAPVLSDGEFDALLKRLQAMEDAFPELAVPDSPTKLVG 68
>gi|56479083|ref|YP_160672.1| NAD-dependent DNA ligase [Aromatoleum aromaticum EbN1]
gi|81356392|sp|Q5NYU3|DNLJ_AZOSE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|56315126|emb|CAI09771.1| NAD-dependent DNA ligase [Aromatoleum aromaticum EbN1]
Length = 681
Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 24/46 (52%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY LD P D YDR+ LDAL+ + PEL D P VG
Sbjct: 21 HDHAYYVLDAPTVPDAEYDRLFRELDALERRHPELLVPDSPTRRVG 66
>gi|154248881|ref|YP_001409706.1| DNA ligase, NAD-dependent [Fervidobacterium nodosum Rt17-B1]
gi|190359256|sp|A7HJG6|DNLJ_FERNB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|154152817|gb|ABS60049.1| DNA ligase, NAD-dependent [Fervidobacterium nodosum Rt17-B1]
Length = 681
Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
EVE L K +H YY L P+ +D YD++ +RL L+E++PEL D P VG
Sbjct: 9 EVEKLRKEIEYHNYRYYVLAQPVISDEEYDKLMKRLMELEEKYPELKTPDSPTQRVG 65
>gi|330466191|ref|YP_004403934.1| DNA ligase [Verrucosispora maris AB-18-032]
gi|328809162|gb|AEB43334.1| DNA ligase, NAD-dependent [Verrucosispora maris AB-18-032]
Length = 717
Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 25/46 (54%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HQ YY LD P +D +DR L AL+E+FP L D P VG
Sbjct: 46 HQYRYYVLDAPTVSDAEFDRQLRELTALEEEFPALRTPDSPTQRVG 91
>gi|227356188|ref|ZP_03840577.1| DNA ligase [Proteus mirabilis ATCC 29906]
gi|227163652|gb|EEI48568.1| DNA ligase [Proteus mirabilis ATCC 29906]
Length = 675
Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ +L AL+ + PEL D P VG
Sbjct: 18 HHEYLYHVMDAPEIPDAEYDRLMNKLKALEAEHPELITPDSPTQRVG 64
>gi|197285679|ref|YP_002151551.1| NAD-dependent DNA ligase LigA [Proteus mirabilis HI4320]
gi|254781393|sp|B4EZR2|DNLJ_PROMH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|194683166|emb|CAR43788.1| DNA ligase [Proteus mirabilis HI4320]
Length = 675
Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ +L AL+ + PEL D P VG
Sbjct: 18 HHEYLYHVMDAPEIPDAEYDRLMNKLKALEAEHPELITPDSPTQRVG 64
>gi|240948595|ref|ZP_04752968.1| NAD-dependent DNA ligase LigA [Actinobacillus minor NM305]
gi|240297103|gb|EER47674.1| NAD-dependent DNA ligase LigA [Actinobacillus minor NM305]
Length = 679
Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 31/60 (51%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ E+E L ++ Y+ LDNPL D YDR+ L L+ Q PEL D P VG
Sbjct: 12 SLSEIETLRNKLREYEYHYHVLDNPLVPDAEYDRLMNELKNLEWQHPELITPDSPTQRVG 71
>gi|219870289|ref|YP_002474664.1| NAD-dependent DNA ligase LigA [Haemophilus parasuis SH0165]
gi|254781340|sp|B8F314|DNLJ_HAEPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|219690493|gb|ACL31716.1| NAD-dependent DNA ligase LigA [Haemophilus parasuis SH0165]
Length = 675
Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 31/57 (54%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++E+L + ++ Y+ LDNPL D YDR+ L L+ Q PEL D P VG
Sbjct: 8 QLEHLREKLREYEYHYHVLDNPLVPDAEYDRLMNELKNLEWQHPELITSDSPTQRVG 64
>gi|167855687|ref|ZP_02478444.1| NAD-dependent DNA ligase LigA [Haemophilus parasuis 29755]
gi|167853205|gb|EDS24462.1| NAD-dependent DNA ligase LigA [Haemophilus parasuis 29755]
Length = 675
Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 31/57 (54%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++E+L + ++ Y+ LDNPL D YDR+ L L+ Q PEL D P VG
Sbjct: 8 QLEHLREKLREYEYHYHVLDNPLVPDAEYDRLMNELKNLEWQHPELITSDSPTQRVG 64
>gi|167750769|ref|ZP_02422896.1| hypothetical protein EUBSIR_01747 [Eubacterium siraeum DSM 15702]
gi|167656204|gb|EDS00334.1| hypothetical protein EUBSIR_01747 [Eubacterium siraeum DSM 15702]
Length = 660
Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 32/65 (49%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K + E E L K A H YY LD+P D YDR+ R+ ++ + PE+ E P
Sbjct: 1 MDKEQIKSEYEQLCKQAEQHNFNYYVLDDPTIEDDEYDRLMRRIKEIEAENPEIVSESSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQHVG 65
>gi|57234606|ref|YP_181338.1| DNA ligase, NAD-dependent [Dehalococcoides ethenogenes 195]
gi|123759715|sp|Q3Z8W1|DNLJ_DEHE1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|57225054|gb|AAW40111.1| DNA ligase, NAD-dependent [Dehalococcoides ethenogenes 195]
Length = 677
Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 29/57 (50%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E+E L + H + YY DNP +D YD + RL L+E PEL D P VG
Sbjct: 7 EIENLRREINRHNQLYYVQDNPEISDSEYDALLRRLKELEEAHPELVTADSPTQRVG 63
>gi|116617684|ref|YP_818055.1| NAD-dependent DNA ligase [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
gi|122272115|sp|Q03YP0|DNLJ_LEUMM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|116096531|gb|ABJ61682.1| NAD-dependent DNA ligase [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
Length = 680
Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 34/68 (50%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
+ L+ +A E L K + + YY D PL D +YD + RL AL+E+FP+
Sbjct: 8 IEKLTTQDAQQETARLQKQLVQYGTAYYEDDAPLVEDYIYDALYARLVALEEKFPQYVIP 67
Query: 111 DHPWNTVG 118
D P VG
Sbjct: 68 DSPTQNVG 75
>gi|291530728|emb|CBK96313.1| DNA ligase, NAD-dependent [Eubacterium siraeum 70/3]
Length = 660
Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 32/65 (49%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K + E E L K A H YY LD+P D YDR+ R+ ++ + PE+ E P
Sbjct: 1 MDKEQIKSEYEQLCKQAEQHNFNYYVLDDPTIEDDEYDRLMRRIKEIEAENPEIVSESSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQHVG 65
>gi|218281363|ref|ZP_03487841.1| hypothetical protein EUBIFOR_00406 [Eubacterium biforme DSM 3989]
gi|218217455|gb|EEC90993.1| hypothetical protein EUBIFOR_00406 [Eubacterium biforme DSM 3989]
Length = 667
Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
YY DNP TD YDR+ + L AL+E++PE++D P
Sbjct: 24 YYVYDNPSITDQEYDRLMQELMALEEKYPEMYDATSP 60
>gi|158421773|ref|YP_001523065.1| NAD-dependent DNA ligase [Azorhizobium caulinodans ORS 571]
gi|190359227|sp|A8IGY0|DNLJ_AZOC5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|158328662|dbj|BAF86147.1| NAD-dependent DNA ligase [Azorhizobium caulinodans ORS 571]
Length = 739
Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 37 NKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSER 96
N+ AL + + K V+ LS EA E L + H YY+ D P+ +D YDR+ R
Sbjct: 4 NRPALPT---RDKAVSDLSATEASDEHAALSQEIASHDARYYQEDAPVISDADYDRLRRR 60
Query: 97 LDALQEQFPELFDEDHPWNTVG 118
+ ++ +FP L ++D VG
Sbjct: 61 YEDIEARFPALKNDDSLSRKVG 82
>gi|241760920|ref|ZP_04759009.1| DNA ligase, NAD-dependent [Zymomonas mobilis subsp. mobilis ATCC
10988]
gi|241374539|gb|EER64000.1| DNA ligase, NAD-dependent [Zymomonas mobilis subsp. mobilis ATCC
10988]
Length = 731
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
LS+ +A+IE+E L + H+ Y+ DNP D YD + R +++ FP+L D P
Sbjct: 26 LSREQAVIELERLANLISHYDHLYHDKDNPAVPDSEYDALVLRNRRIEQFFPDLIRPDSP 85
Query: 114 WNTVG 118
VG
Sbjct: 86 SKKVG 90
>gi|302337851|ref|YP_003803057.1| DNA ligase, NAD-dependent [Spirochaeta smaragdinae DSM 11293]
gi|301635036|gb|ADK80463.1| DNA ligase, NAD-dependent [Spirochaeta smaragdinae DSM 11293]
Length = 703
Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 33/63 (52%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
K +A EV L + + + YY P +D YDR+ RL L+EQ+PEL ED P
Sbjct: 9 KEKATEEVRRLADLLFRYNRAYYIEGKPEVSDTEYDRLFLRLQELEEQWPELKREDSPTL 68
Query: 116 TVG 118
VG
Sbjct: 69 RVG 71
>gi|260753112|ref|YP_003226005.1| DNA ligase, NAD-dependent [Zymomonas mobilis subsp. mobilis NCIMB
11163]
gi|258552475|gb|ACV75421.1| DNA ligase, NAD-dependent [Zymomonas mobilis subsp. mobilis NCIMB
11163]
Length = 731
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
LS+ +A+IE+E L + H+ Y+ DNP D YD + R +++ FP+L D P
Sbjct: 26 LSREQAVIELERLANLISHYDHLYHDKDNPAVPDSEYDALVLRNRRIEQFFPDLIRPDSP 85
Query: 114 WNTVG 118
VG
Sbjct: 86 SKKVG 90
>gi|251793989|ref|YP_003008721.1| NAD-dependent DNA ligase LigA [Aggregatibacter aphrophilus NJ8700]
gi|247535388|gb|ACS98634.1| DNA ligase, NAD-dependent [Aggregatibacter aphrophilus NJ8700]
Length = 671
Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 31/57 (54%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L K +H+ Y+ LD P D YDR+ +L AL++Q P L D P VG
Sbjct: 8 QIDDLRKTLRYHEYQYHVLDEPQIPDSEYDRLFHQLKALEQQHPALITADSPTQRVG 64
>gi|227432449|ref|ZP_03914436.1| NAD-dependent DNA ligase [Leuconostoc mesenteroides subsp. cremoris
ATCC 19254]
gi|227351770|gb|EEJ42009.1| NAD-dependent DNA ligase [Leuconostoc mesenteroides subsp. cremoris
ATCC 19254]
Length = 680
Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 34/68 (50%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
+ L+ +A E L K + + YY D PL D +YD + RL AL+E+FP+
Sbjct: 8 IEKLTTQDAQQETARLQKQLVQYGTAYYEDDAPLVEDYIYDALYARLVALEEKFPQYVIP 67
Query: 111 DHPWNTVG 118
D P VG
Sbjct: 68 DSPTQNVG 75
>gi|223041748|ref|ZP_03611941.1| DNA ligase [Actinobacillus minor 202]
gi|223017432|gb|EEF15850.1| DNA ligase [Actinobacillus minor 202]
Length = 680
Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 29/57 (50%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E+E L ++ Y+ LDNPL D YDR+ L L+ Q PEL D P VG
Sbjct: 15 EIETLRNKLREYEYHYHVLDNPLVPDAEYDRLMNELKNLEWQHPELITPDSPTQRVG 71
>gi|227498670|ref|ZP_03928814.1| DNA ligase [Acidaminococcus sp. D21]
gi|226904126|gb|EEH90044.1| DNA ligase [Acidaminococcus sp. D21]
Length = 674
Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 35/65 (53%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++K EA+++ + L K + YY D P TD YD + +L A++ ++PEL D P
Sbjct: 1 MTKQEALLKAQALRKELERNSYLYYVEDMPTITDAEYDSLMRQLRAIEAEYPELVTPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQHVG 65
>gi|160872442|ref|ZP_02062574.1| DNA ligase, NAD-dependent [Rickettsiella grylli]
gi|159121241|gb|EDP46579.1| DNA ligase, NAD-dependent [Rickettsiella grylli]
Length = 674
Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 26/46 (56%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY LD PL D YD + L+A+++++PEL D P VG
Sbjct: 22 HNYHYYILDAPLINDATYDTLFRELEAIEKRYPELITPDSPTQRVG 67
>gi|294506892|ref|YP_003570950.1| NAD-dependent DNA ligase [Salinibacter ruber M8]
gi|294343220|emb|CBH23998.1| NAD-dependent DNA ligase [Salinibacter ruber M8]
Length = 691
Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH YY LD P+ +D YDR+ ++L L+ ++P L D P + VG
Sbjct: 34 HHNYRYYVLDAPVVSDAEYDRLFQQLQTLEAEYPGLQTPDSPTHQVG 80
>gi|315498681|ref|YP_004087485.1| DNA ligase, nad-dependent [Asticcacaulis excentricus CB 48]
gi|315416693|gb|ADU13334.1| DNA ligase, NAD-dependent [Asticcacaulis excentricus CB 48]
Length = 697
Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ YY + P TD YD + + L AL+ Q+P+L D P VG
Sbjct: 22 HHRDLYYNQEAPELTDAEYDALEQELRALEAQYPDLHTVDSPTEQVG 68
>gi|83816597|ref|YP_445022.1| DNA ligase, NAD-dependent [Salinibacter ruber DSM 13855]
gi|123739757|sp|Q2S459|DNLJ_SALRD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|83757991|gb|ABC46104.1| DNA ligase, NAD-dependent [Salinibacter ruber DSM 13855]
Length = 690
Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH YY LD P+ +D YDR+ ++L L+ ++P L D P + VG
Sbjct: 34 HHNYRYYVLDAPVVSDAEYDRLFQQLQTLEAEYPVLQTPDSPTHQVG 80
>gi|326330727|ref|ZP_08197031.1| DNA ligase, NAD-dependent [Nocardioidaceae bacterium Broad-1]
gi|325951568|gb|EGD43604.1| DNA ligase, NAD-dependent [Nocardioidaceae bacterium Broad-1]
Length = 702
Score = 43.9 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 26/42 (61%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD+P +D +D+ R++ L+EQFPEL D P VG
Sbjct: 31 YYVLDDPTLSDADFDQKWRRINELEEQFPELRTPDSPTQKVG 72
>gi|121533514|ref|ZP_01665342.1| DNA ligase, NAD-dependent [Thermosinus carboxydivorans Nor1]
gi|121308073|gb|EAX48987.1| DNA ligase, NAD-dependent [Thermosinus carboxydivorans Nor1]
Length = 673
Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 31/61 (50%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+A E E L + +H YY LD P +D +D + RL A++E +P L D P V
Sbjct: 11 QAAREAEQLRRQIHYHNHRYYVLDAPEISDAEFDALMRRLIAIEEAYPSLITPDSPTQRV 70
Query: 118 G 118
G
Sbjct: 71 G 71
>gi|114327083|ref|YP_744240.1| NAD-dependent DNA ligase [Granulibacter bethesdensis CGDNIH1]
gi|122327935|sp|Q0BV35|DNLJ_GRABC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|114315257|gb|ABI61317.1| NAD-dependent DNA ligase [Granulibacter bethesdensis CGDNIH1]
Length = 700
Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 33/66 (50%)
Query: 53 SLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDH 112
+LS EA E+E L YYR D PL TD YD + +R ++ FP+ ++
Sbjct: 16 ALSPAEARAELERLASRIAELDDAYYRDDAPLVTDADYDALRQRNAEIERLFPDAILKNS 75
Query: 113 PWNTVG 118
P N VG
Sbjct: 76 PANRVG 81
>gi|160899029|ref|YP_001564611.1| NAD-dependent DNA ligase [Delftia acidovorans SPH-1]
gi|254781308|sp|A9BZW4|DNLJ_DELAS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|160364613|gb|ABX36226.1| DNA ligase, NAD-dependent [Delftia acidovorans SPH-1]
Length = 703
Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 20/41 (48%), Positives = 24/41 (58%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
YY LD P DG YDRV ++L AL+ +PEL D P V
Sbjct: 43 YYVLDTPTVPDGEYDRVFQQLQALEGAYPELVTPDSPTQRV 83
>gi|221066629|ref|ZP_03542734.1| DNA ligase, NAD-dependent [Comamonas testosteroni KF-1]
gi|220711652|gb|EED67020.1| DNA ligase, NAD-dependent [Comamonas testosteroni KF-1]
Length = 708
Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 70 ALHHQKW-----YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
AL Q W YY LD P DG YDRV ++L+AL+ +P L D P V
Sbjct: 35 ALRAQLWQWAHEYYVLDAPTVPDGEYDRVYQQLEALEGAYPALVTPDSPTQRV 87
>gi|301063517|ref|ZP_07204049.1| DNA ligase (NAD(+)) [delta proteobacterium NaphS2]
gi|300442456|gb|EFK06689.1| DNA ligase (NAD(+)) [delta proteobacterium NaphS2]
Length = 671
Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 31/57 (54%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E++ L + +H YY LD+P D YDR+ +RL L+ + PEL D P VG
Sbjct: 7 EIDELKQKIEYHNHRYYVLDDPEIPDADYDRLFQRLLELETKHPELRSPDSPTRKVG 63
>gi|120403104|ref|YP_952933.1| NAD-dependent DNA ligase LigA [Mycobacterium vanbaalenii PYR-1]
gi|166216216|sp|A1T6X7|DNLJ_MYCVP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|119955922|gb|ABM12927.1| DNA ligase, NAD-dependent [Mycobacterium vanbaalenii PYR-1]
Length = 707
Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 26/46 (56%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HQ YY D P+ TD +D + RL+AL+E PEL D P VG
Sbjct: 39 HQFRYYVRDAPIITDAEFDAMLRRLEALEEAHPELRTPDSPTQLVG 84
>gi|282899989|ref|ZP_06307949.1| NAD-dependent DNA ligase [Cylindrospermopsis raciborskii CS-505]
gi|281195087|gb|EFA70024.1| NAD-dependent DNA ligase [Cylindrospermopsis raciborskii CS-505]
Length = 690
Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 30/56 (53%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
VE L K+ YY LD+P+ D +YDR+ L L++++P L D P VG
Sbjct: 14 VEELRKLLQQASYAYYVLDSPIMEDTIYDRLYRELQELEKKYPNLVTTDSPTQRVG 69
>gi|254460861|ref|ZP_05074277.1| DNA ligase, NAD-dependent [Rhodobacterales bacterium HTCC2083]
gi|206677450|gb|EDZ41937.1| DNA ligase, NAD-dependent [Rhodobacteraceae bacterium HTCC2083]
Length = 706
Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 34/68 (50%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
+T LS EA E+ L K Y+ DNP +D YD + +R A+++ FP L E
Sbjct: 6 ITELSVEEARAELAALSKALNTANVAYHGKDNPDLSDANYDALKQRNAAIEDHFPTLVRE 65
Query: 111 DHPWNTVG 118
D P VG
Sbjct: 66 DSPSKLVG 73
>gi|299139723|ref|ZP_07032896.1| DNA ligase, NAD-dependent [Acidobacterium sp. MP5ACTX8]
gi|298598347|gb|EFI54512.1| DNA ligase, NAD-dependent [Acidobacterium sp. MP5ACTX8]
Length = 723
Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 28/57 (49%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++E L + HH+ YY LD P TD YD L L+ + PEL D P VG
Sbjct: 14 QIEALREDLRHHEHLYYVLDAPELTDAQYDARMNELRRLETEHPELVTPDSPTQRVG 70
>gi|258542980|ref|YP_003188413.1| DNA ligase [Acetobacter pasteurianus IFO 3283-01]
gi|256634058|dbj|BAI00034.1| DNA ligase [Acetobacter pasteurianus IFO 3283-01]
gi|256637118|dbj|BAI03087.1| DNA ligase [Acetobacter pasteurianus IFO 3283-03]
gi|256640170|dbj|BAI06132.1| DNA ligase [Acetobacter pasteurianus IFO 3283-07]
gi|256643227|dbj|BAI09182.1| DNA ligase [Acetobacter pasteurianus IFO 3283-22]
gi|256646282|dbj|BAI12230.1| DNA ligase [Acetobacter pasteurianus IFO 3283-26]
gi|256649335|dbj|BAI15276.1| DNA ligase [Acetobacter pasteurianus IFO 3283-32]
gi|256652321|dbj|BAI18255.1| DNA ligase [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256655379|dbj|BAI21306.1| DNA ligase [Acetobacter pasteurianus IFO 3283-12]
Length = 685
Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 32/65 (49%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+++ +A E+E L HH YYR D P +D YD + R DA+ Q PE E+
Sbjct: 1 MTQQQAREELERLAAEIAHHNAAYYRNDAPEISDAEYDALRRRYDAIVAQHPEAEPENSA 60
Query: 114 WNTVG 118
VG
Sbjct: 61 AQAVG 65
>gi|332704021|ref|ZP_08424109.1| DNA ligase [Desulfovibrio africanus str. Walvis Bay]
gi|332554170|gb|EGJ51214.1| DNA ligase [Desulfovibrio africanus str. Walvis Bay]
Length = 771
Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 24/56 (42%), Positives = 28/56 (50%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
VE L K H YY LD P+ +D YDR+ L L+E PEL D P VG
Sbjct: 12 VERLRKELHFHNYRYYVLDAPVISDAEYDRMMRELQDLEEHNPELRDTSSPTQRVG 67
>gi|119472555|ref|ZP_01614603.1| NAD-dependent DNA ligase [Alteromonadales bacterium TW-7]
gi|119444879|gb|EAW26179.1| NAD-dependent DNA ligase [Alteromonadales bacterium TW-7]
Length = 672
Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 27/57 (47%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ +L + H YY LD P D YDR+ L AL+ Q PE D P VG
Sbjct: 8 QINHLRTLLEQHNYNYYVLDTPSIPDAEYDRLLRELSALETQNPEFLSADSPTQKVG 64
>gi|293395040|ref|ZP_06639327.1| DNA ligase [Serratia odorifera DSM 4582]
gi|291422447|gb|EFE95689.1| DNA ligase [Serratia odorifera DSM 4582]
Length = 673
Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ LD P D YDR+ L L+E PEL D P VG
Sbjct: 17 HHEYLYHVLDAPEIPDAEYDRLMRELRTLEEAHPELITADSPTQRVG 63
>gi|15889366|ref|NP_355047.1| NAD-dependent DNA ligase LigA [Agrobacterium tumefaciens str. C58]
gi|166215388|sp|A9CIB3|DNLJ_AGRT5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|15157212|gb|AAK87832.1| DNA ligase [Agrobacterium tumefaciens str. C58]
Length = 724
Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 34/69 (49%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V +L++ EA E+ +L H Y+ D P +D YD + R DA++ FP L
Sbjct: 8 VENLTELEASSELAFLAAELARHDALYHGKDAPEISDADYDALKRRNDAIEAAFPALVRA 67
Query: 111 DHPWNTVGY 119
D P VG+
Sbjct: 68 DSPSKKVGF 76
>gi|84498237|ref|ZP_00997034.1| DNA ligase [Janibacter sp. HTCC2649]
gi|84381737|gb|EAP97620.1| DNA ligase [Janibacter sp. HTCC2649]
Length = 731
Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 33/53 (62%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L + A HQ Y+ D+P +DG YD++ +RL+ L++++P L + P +VG
Sbjct: 40 LAEQATTHQFAYHVKDSPTVSDGEYDKLMKRLNMLEDEYPSLRTPESPTQSVG 92
>gi|307257368|ref|ZP_07539138.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
gi|306864218|gb|EFM96131.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
Length = 682
Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 31/62 (50%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
G ++E L + ++ +Y+ LDNPL D YDR+ L L+ Q PE D P
Sbjct: 12 GTTFAQLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITADSPTQR 71
Query: 117 VG 118
VG
Sbjct: 72 VG 73
>gi|238919178|ref|YP_002932692.1| NAD-dependent DNA ligase LigA [Edwardsiella ictaluri 93-146]
gi|238868746|gb|ACR68457.1| DNA ligase, NAD-dependent, putative [Edwardsiella ictaluri 93-146]
Length = 672
Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 60 MIE--VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
MIE +E L HH+ YY LD+P TD YDR+ +L L+ P L D P V
Sbjct: 1 MIEQQLEQLRDALRHHEYQYYVLDDPQITDAEYDRLMMQLKQLEAVHPALVTVDSPSQRV 60
Query: 118 G 118
G
Sbjct: 61 G 61
>gi|118590881|ref|ZP_01548281.1| NAD-dependent DNA ligase LigA [Stappia aggregata IAM 12614]
gi|118436403|gb|EAV43044.1| NAD-dependent DNA ligase LigA [Stappia aggregata IAM 12614]
Length = 750
Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 38/68 (55%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
+ +L++ EA +E++ L H + Y++ D P+ +D YD + R +++ +FP L +
Sbjct: 44 IDALTQEEAQVELKRLAAEIAEHDRRYHQEDAPVISDADYDALRRRNASIEARFPNLILD 103
Query: 111 DHPWNTVG 118
D P VG
Sbjct: 104 DGPSAQVG 111
>gi|325293451|ref|YP_004279315.1| DNA ligase [Agrobacterium sp. H13-3]
gi|325061304|gb|ADY64995.1| DNA ligase [Agrobacterium sp. H13-3]
Length = 724
Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 34/69 (49%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V +L++ EA E+ +L H Y+ D P +D YD + R DA++ FP L
Sbjct: 8 VENLTELEASSELAFLAAELARHDALYHGKDAPEISDADYDALKRRNDAIEAAFPALVRA 67
Query: 111 DHPWNTVGY 119
D P VG+
Sbjct: 68 DSPSKKVGF 76
>gi|262042032|ref|ZP_06015211.1| DNA ligase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
13884]
gi|259040623|gb|EEW41715.1| DNA ligase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
13884]
Length = 671
Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 25/47 (53%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ +L L+ Q PEL D P VG
Sbjct: 17 HHEYLYHVMDAPEVPDAEYDRLMRKLRELESQHPELITPDSPTQRVG 63
>gi|152971289|ref|YP_001336398.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|166215815|sp|A6TC47|DNLJ_KLEP7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|150956138|gb|ABR78168.1| DNA ligase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
Length = 671
Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 25/47 (53%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ +L L+ Q PEL D P VG
Sbjct: 17 HHEYLYHVMDAPEVPDAEYDRLMRKLRELESQHPELITPDSPTQRVG 63
>gi|330013648|ref|ZP_08307732.1| DNA ligase [Klebsiella sp. MS 92-3]
gi|328533421|gb|EGF60158.1| DNA ligase [Klebsiella sp. MS 92-3]
Length = 671
Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 25/47 (53%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ +L L+ Q PEL D P VG
Sbjct: 17 HHEYLYHVMDAPEVPDAEYDRLMRKLRELESQHPELITPDSPTQRVG 63
>gi|307248328|ref|ZP_07530352.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
gi|306855149|gb|EFM87328.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
Length = 682
Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 31/62 (50%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
G ++E L + ++ +Y+ LDNPL D YDR+ L L+ Q PE D P
Sbjct: 12 GTTFAQLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITADSPTQR 71
Query: 117 VG 118
VG
Sbjct: 72 VG 73
>gi|307246220|ref|ZP_07528301.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
gi|307255203|ref|ZP_07537019.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 9 str.
CVJ13261]
gi|307259638|ref|ZP_07541362.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
gi|306852829|gb|EFM85053.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
gi|306861831|gb|EFM93809.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 9 str.
CVJ13261]
gi|306866283|gb|EFM98147.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
Length = 682
Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 31/62 (50%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
G ++E L + ++ +Y+ LDNPL D YDR+ L L+ Q PE D P
Sbjct: 12 GTTFAQLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITADSPTQR 71
Query: 117 VG 118
VG
Sbjct: 72 VG 73
>gi|238895883|ref|YP_002920619.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae NTUH-K2044]
gi|238548201|dbj|BAH64552.1| DNA ligase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
Length = 671
Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 25/47 (53%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ +L L+ Q PEL D P VG
Sbjct: 17 HHEYLYHVMDAPEVPDAEYDRLMRKLRELESQHPELITPDSPTQRVG 63
>gi|190150622|ref|YP_001969147.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 7 str. AP76]
gi|307263969|ref|ZP_07545570.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 13 str. N273]
gi|254781246|sp|B3H275|DNLJ_ACTP7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|189915753|gb|ACE62005.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 7 str. AP76]
gi|306870658|gb|EFN02401.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 13 str. N273]
Length = 682
Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 31/62 (50%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
G ++E L + ++ +Y+ LDNPL D YDR+ L L+ Q PE D P
Sbjct: 12 GTTFAQLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITADSPTQR 71
Query: 117 VG 118
VG
Sbjct: 72 VG 73
>gi|165976722|ref|YP_001652315.1| NAD-dependent DNA ligase LigA [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|190359223|sp|B0BQN6|DNLJ_ACTPJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|165876823|gb|ABY69871.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
Length = 682
Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 31/62 (50%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
G ++E L + ++ +Y+ LDNPL D YDR+ L L+ Q PE D P
Sbjct: 12 GTTFAQLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITADSPTQR 71
Query: 117 VG 118
VG
Sbjct: 72 VG 73
>gi|315187042|gb|EFU20799.1| DNA ligase, NAD-dependent [Spirochaeta thermophila DSM 6578]
Length = 697
Score = 43.5 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 34/65 (52%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+++ EA E++ LV++ YY L P TD YD + ERL L+ +FP L D P
Sbjct: 1 MTEQEAKREIDRLVELLQRADYEYYVLGRPHLTDQEYDSLFERLKTLETRFPHLRRPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 IQRVG 65
>gi|7673996|sp|O87703|DNLJ_BACST RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|3688229|emb|CAA09732.1| DNA ligase [Geobacillus stearothermophilus]
Length = 670
Score = 43.5 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ + L A++EQ+PEL D P +G
Sbjct: 24 YYVLDRPSVPDAEYDRLMQELIAIEEQYPELKTSDSPTQRIG 65
>gi|307261779|ref|ZP_07543445.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
gi|306868597|gb|EFN00408.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
Length = 676
Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 31/62 (50%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
G ++E L + ++ +Y+ LDNPL D YDR+ L L+ Q PE D P
Sbjct: 6 GTTFAQLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITADSPTQR 65
Query: 117 VG 118
VG
Sbjct: 66 VG 67
>gi|307250556|ref|ZP_07532498.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 4 str. M62]
gi|306857372|gb|EFM89486.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 4 str. M62]
Length = 682
Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 31/62 (50%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
G ++E L + ++ +Y+ LDNPL D YDR+ L L+ Q PE D P
Sbjct: 12 GTTFAQLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITADSPTQR 71
Query: 117 VG 118
VG
Sbjct: 72 VG 73
>gi|85374270|ref|YP_458332.1| DNA ligase [Erythrobacter litoralis HTCC2594]
gi|123409617|sp|Q2N9V6|DNLJ_ERYLH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|84787353|gb|ABC63535.1| DNA ligase [Erythrobacter litoralis HTCC2594]
Length = 736
Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 35/70 (50%)
Query: 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
++ +LS+ EA E+ L + H + Y+ D P TD YD + R L+ FP L
Sbjct: 4 ELENLSEAEAANELMRLARQIAKHDRLYHAEDAPEITDQEYDALVRRNAELEAAFPHLVR 63
Query: 110 EDHPWNTVGY 119
ED P VG+
Sbjct: 64 EDSPSRKVGH 73
>gi|303250616|ref|ZP_07336813.1| NAD-dependent DNA ligase LigA [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|307252937|ref|ZP_07534825.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
gi|302650604|gb|EFL80763.1| NAD-dependent DNA ligase LigA [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306859575|gb|EFM91600.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
Length = 682
Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 31/62 (50%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
G ++E L + ++ +Y+ LDNPL D YDR+ L L+ Q PE D P
Sbjct: 12 GTTFAQLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITADSPTQR 71
Query: 117 VG 118
VG
Sbjct: 72 VG 73
>gi|225181787|ref|ZP_03735225.1| DNA ligase, NAD-dependent [Dethiobacter alkaliphilus AHT 1]
gi|225167561|gb|EEG76374.1| DNA ligase, NAD-dependent [Dethiobacter alkaliphilus AHT 1]
Length = 667
Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + +A+ VE L + H Y+ LD P +D +D + ++L+A++ QFP+L D P
Sbjct: 1 MDRQQALETVEKLRQEIDDHNYRYHVLDEPQISDAEFDDLMQKLEAMEAQFPDLVTPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|329770498|ref|ZP_08261876.1| DNA ligase [Gemella sanguinis M325]
gi|328836247|gb|EGF85916.1| DNA ligase [Gemella sanguinis M325]
Length = 666
Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 34/57 (59%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E+ LVK+ + YY DNP +D YD + ++L+ L++++PEL E+ P VG
Sbjct: 7 EIYKLVKLLNKYSYDYYVEDNPQISDTEYDTLYKQLEKLEKEYPELIQENSPTQRVG 63
>gi|220920535|ref|YP_002495836.1| DNA ligase, NAD-dependent [Methylobacterium nodulans ORS 2060]
gi|254781366|sp|B8ICE5|DNLJ_METNO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|219945141|gb|ACL55533.1| DNA ligase, NAD-dependent [Methylobacterium nodulans ORS 2060]
Length = 829
Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 34/61 (55%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
+A+ V ++ +A E L H + Y+ D P+ +D YD + RL+A++E+FPE
Sbjct: 7 RARPVEEMTAAQAREAHESLSAEIAEHDRRYHGEDAPIISDAEYDALRRRLEAIEERFPE 66
Query: 107 L 107
L
Sbjct: 67 L 67
>gi|108803178|ref|YP_643115.1| DNA ligase, NAD-dependent [Rubrobacter xylanophilus DSM 9941]
gi|122976160|sp|Q1AZ75|DNLJ_RUBXD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|108764421|gb|ABG03303.1| DNA ligase, NAD-dependent [Rubrobacter xylanophilus DSM 9941]
Length = 685
Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 31/62 (50%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
EA VE L + +H + YY D P +D YD + L+ L+ +FPEL D P
Sbjct: 18 AEARQRVEELREQIRYHNRKYYVEDAPEISDAEYDALYRELEELESRFPELVTPDSPTQR 77
Query: 117 VG 118
VG
Sbjct: 78 VG 79
>gi|329848744|ref|ZP_08263772.1| DNA ligase, NAD-dependent [Asticcacaulis biprosthecum C19]
gi|328843807|gb|EGF93376.1| DNA ligase, NAD-dependent [Asticcacaulis biprosthecum C19]
Length = 714
Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 11/74 (14%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
LD A+ + S E +V+Y H+ YYR + P TD YD + ++L L+ QF
Sbjct: 3 LDDARALHS----ELAAQVQY-------HRGLYYREETPELTDADYDALEKQLRDLEAQF 51
Query: 105 PELFDEDHPWNTVG 118
P+L + P TVG
Sbjct: 52 PDLKTSESPTQTVG 65
>gi|1770452|emb|CAA66920.1| ligase-like protein [Homo sapiens]
Length = 454
Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 31/68 (45%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
+ LS A EV L + YY D PL D +YD + RL AL+ FP+ +
Sbjct: 8 IEQLSTSAAQQEVAQLQADLTEYGVAYYEQDAPLVEDHVYDALYARLVALESAFPQFVTQ 67
Query: 111 DHPWNTVG 118
D P VG
Sbjct: 68 DSPTQNVG 75
>gi|126462048|ref|YP_001043162.1| DNA ligase, NAD-dependent [Rhodobacter sphaeroides ATCC 17029]
gi|166216229|sp|A3PJ74|DNLJ_RHOS1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|126103712|gb|ABN76390.1| DNA ligase, NAD-dependent [Rhodobacter sphaeroides ATCC 17029]
Length = 704
Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 36/74 (48%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
+ + V L++ EA E+ L + Y+ D P +D YD + R A++EQF
Sbjct: 1 MQDERPVDQLTEAEAATELARLAEAIEAANTAYHTHDAPQISDADYDALKLRNRAIEEQF 60
Query: 105 PELFDEDHPWNTVG 118
PEL D P + VG
Sbjct: 61 PELRRSDSPSDRVG 74
>gi|260598800|ref|YP_003211371.1| NAD-dependent DNA ligase LigA [Cronobacter turicensis z3032]
gi|260217977|emb|CBA32625.1| DNA ligase [Cronobacter turicensis z3032]
Length = 672
Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 25/47 (53%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L AL+E PEL D P VG
Sbjct: 17 HHEFLYHVMDAPEVPDAEYDRLMRELRALEEAHPELVTPDSPTQRVG 63
>gi|156933031|ref|YP_001436947.1| NAD-dependent DNA ligase LigA [Cronobacter sakazakii ATCC BAA-894]
gi|166215403|sp|A7MKW4|DNLJ_ENTS8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|156531285|gb|ABU76111.1| hypothetical protein ESA_00834 [Cronobacter sakazakii ATCC BAA-894]
Length = 672
Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 25/47 (53%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L AL+E PEL D P VG
Sbjct: 17 HHEFLYHVMDAPEVPDAEYDRLMRELRALEEAHPELVTPDSPTQRVG 63
>gi|239618216|ref|YP_002941538.1| DNA ligase, NAD-dependent [Kosmotoga olearia TBF 19.5.1]
gi|239507047|gb|ACR80534.1| DNA ligase, NAD-dependent [Kosmotoga olearia TBF 19.5.1]
Length = 672
Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+H YY L++P+ TD YDR+ + L L++++PEL D P +G
Sbjct: 20 YHAYRYYVLNDPIITDEEYDRMLKELQELEKKYPELITPDSPTQRIG 66
>gi|326693831|ref|ZP_08230836.1| DNA ligase, NAD-dependent [Leuconostoc argentinum KCTC 3773]
Length = 681
Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 31/68 (45%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
+ LS A EV L + YY D PL D +YD + RL AL+ FP+ +
Sbjct: 8 IEQLSTSAAQQEVAQLQADLTEYGVAYYEQDAPLVEDHVYDALYARLVALESAFPQFVTQ 67
Query: 111 DHPWNTVG 118
D P VG
Sbjct: 68 DSPTQNVG 75
>gi|310657889|ref|YP_003935610.1| DNA ligase [Clostridium sticklandii DSM 519]
gi|308824667|emb|CBH20705.1| DNA ligase, NAD(+)-dependent [Clostridium sticklandii]
Length = 683
Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH YY D+P +D +D + + L AL+E++PE ED P +G
Sbjct: 23 HHSILYYVQDSPEISDADFDMLMKELIALEEKYPEYITEDSPTQRIG 69
>gi|261418603|ref|YP_003252285.1| NAD-dependent DNA ligase LigA [Geobacillus sp. Y412MC61]
gi|319765418|ref|YP_004130919.1| DNA ligase, NAD-dependent [Geobacillus sp. Y412MC52]
gi|261375060|gb|ACX77803.1| DNA ligase, NAD-dependent [Geobacillus sp. Y412MC61]
gi|317110284|gb|ADU92776.1| DNA ligase, NAD-dependent [Geobacillus sp. Y412MC52]
Length = 670
Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ + L A++EQ+PEL D P +G
Sbjct: 24 YYVLDRPSVPDAEYDRLMQELMAIEEQYPELKTSDSPTQRIG 65
>gi|209545276|ref|YP_002277505.1| NAD-dependent DNA ligase [Gluconacetobacter diazotrophicus PAl 5]
gi|209532953|gb|ACI52890.1| DNA ligase, NAD-dependent [Gluconacetobacter diazotrophicus PAl 5]
Length = 708
Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 52 TSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
+ L++ +AM+E+E L + + YY D P TD YD + +R A++ +FP+L D
Sbjct: 17 SELTEPQAMVELERLAQQIRALDRAYYEDDAPTVTDAEYDALRQRNLAIEARFPDLRRAD 76
Query: 112 HP 113
P
Sbjct: 77 SP 78
>gi|162148970|ref|YP_001603431.1| DNA ligase [Gluconacetobacter diazotrophicus PAl 5]
gi|190359260|sp|A9H0L6|DNLJ_GLUDA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|161787547|emb|CAP57143.1| putative DNA ligase [Gluconacetobacter diazotrophicus PAl 5]
Length = 695
Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 52 TSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
+ L++ +AM+E+E L + + YY D P TD YD + +R A++ +FP+L D
Sbjct: 4 SELTEPQAMVELERLAQQIRALDRAYYEDDAPTVTDAEYDALRQRNLAIEARFPDLRRAD 63
Query: 112 HP 113
P
Sbjct: 64 SP 65
>gi|71907364|ref|YP_284951.1| NAD-dependent DNA ligase [Dechloromonas aromatica RCB]
gi|123746888|sp|Q47FA0|DNLJ_DECAR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|71846985|gb|AAZ46481.1| NAD-dependent DNA ligase [Dechloromonas aromatica RCB]
Length = 683
Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 25/46 (54%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY LD P D YD++ L L++Q+PEL D P + VG
Sbjct: 21 HSYAYYVLDAPTIPDTEYDKLFRELQELEQQYPELLTADSPTHRVG 66
>gi|56418811|ref|YP_146129.1| NAD-dependent DNA ligase LigA [Geobacillus kaustophilus HTA426]
gi|81348272|sp|Q5L3B9|DNLJ_GEOKA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|56378653|dbj|BAD74561.1| DNA ligase (polydeoxyribonucleotide synthase[NAD+]) [Geobacillus
kaustophilus HTA426]
Length = 670
Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ + L A++EQ+PEL D P +G
Sbjct: 24 YYVLDRPSVPDAEYDRLMQELMAIEEQYPELKTSDSPTQRIG 65
>gi|15827911|ref|NP_302174.1| NAD-dependent DNA ligase LigA [Mycobacterium leprae TN]
gi|221230388|ref|YP_002503804.1| NAD-dependent DNA ligase LigA [Mycobacterium leprae Br4923]
gi|7674013|sp|O33102|DNLJ_MYCLE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254781376|sp|B8ZS27|DNLJ_MYCLB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|2414536|emb|CAB16425.1| DNA ligase [Mycobacterium leprae]
gi|13093464|emb|CAC30658.1| DNA ligase [Mycobacterium leprae]
gi|219933495|emb|CAR71800.1| DNA ligase [Mycobacterium leprae Br4923]
Length = 694
Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 26/46 (56%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HQ YY D P+ +D +D + +RL L+EQ PEL D P VG
Sbjct: 27 HQFRYYVRDAPIISDAEFDALLDRLTVLEEQHPELCTPDSPTQLVG 72
>gi|258404928|ref|YP_003197670.1| DNA ligase, NAD-dependent [Desulfohalobium retbaense DSM 5692]
gi|257797155|gb|ACV68092.1| DNA ligase, NAD-dependent [Desulfohalobium retbaense DSM 5692]
Length = 678
Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 26/47 (55%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH YY LD P +D YD + + L AL+ ++PEL D P VG
Sbjct: 19 HHDYLYYVLDAPQISDNEYDALFKELQALEHRYPELDDPASPTKRVG 65
>gi|255657267|ref|ZP_05402676.1| DNA ligase [Clostridium difficile QCD-23m63]
Length = 674
Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 34/57 (59%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E+ L++ +H + YY D+P +D YD++ + L +L+E+ PEL D P N VG
Sbjct: 6 EINKLIETINYHNERYYNQDSPEISDYEYDKLMKELISLEEEHPELKRIDSPTNRVG 62
>gi|255102476|ref|ZP_05331453.1| DNA ligase [Clostridium difficile QCD-63q42]
Length = 674
Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 34/57 (59%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E+ L++ +H + YY D+P +D YD++ + L +L+E+ PEL D P N VG
Sbjct: 6 EINKLIETINYHNERYYNQDSPEISDYEYDKLMKELISLEEEHPELKRIDSPTNRVG 62
>gi|297528690|ref|YP_003669965.1| DNA ligase, NAD-dependent [Geobacillus sp. C56-T3]
gi|297251942|gb|ADI25388.1| DNA ligase, NAD-dependent [Geobacillus sp. C56-T3]
Length = 670
Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ + L A++EQ+PEL D P +G
Sbjct: 24 YYVLDRPSVPDAEYDRLMQELIAIEEQYPELKTSDSPTQRIG 65
>gi|71042246|pdb|1ZAU|A Chain A, Adenylation Domain Of Nad+ Dependent Dna Ligase From
M.Tuberculosis
Length = 328
Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HQ YY D P+ +D +D + RL+AL+EQ PEL D P VG
Sbjct: 27 HQFRYYVRDAPIISDAEFDELLRRLEALEEQHPELRTPDSPTQLVG 72
>gi|260426307|ref|ZP_05780286.1| DNA ligase, NAD-dependent [Citreicella sp. SE45]
gi|260420799|gb|EEX14050.1| DNA ligase, NAD-dependent [Citreicella sp. SE45]
Length = 754
Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 38/69 (55%)
Query: 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
+V +L++ +A E+ L ++ + Y+ D P +D YD + R A++E+FPEL
Sbjct: 10 EVEALTETQARDELARLAEVLAQANRAYHTEDAPEISDADYDALKLRNIAIEERFPELKR 69
Query: 110 EDHPWNTVG 118
ED P VG
Sbjct: 70 EDSPSEQVG 78
>gi|328887795|emb|CAJ70206.2| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Clostridium
difficile]
Length = 674
Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 34/57 (59%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E+ L++ +H + YY D+P +D YD++ + L +L+E+ PEL D P N VG
Sbjct: 6 EINKLIETINYHNERYYNQDSPEISDYEYDKLMKELISLEEEHPELKRIDSPTNRVG 62
>gi|315122567|ref|YP_004063056.1| NAD-dependent DNA ligase LigA [Candidatus Liberibacter solanacearum
CLso-ZC1]
gi|313495969|gb|ADR52568.1| NAD-dependent DNA ligase LigA [Candidatus Liberibacter solanacearum
CLso-ZC1]
Length = 739
Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE---L 107
+ LS +A E+ +L +H YY+ P D YD++ ER DA+ FPE L
Sbjct: 9 IEELSPEQAKKELSFLQHEISYHDDLYYQHSQPKILDFEYDQLKERCDAIARAFPEFASL 68
Query: 108 FDEDHPWNTVG 118
D + P N +G
Sbjct: 69 ADSNGPLNKIG 79
>gi|296451892|ref|ZP_06893609.1| NAD-dependent DNA ligase LigA [Clostridium difficile NAP08]
gi|296879713|ref|ZP_06903688.1| NAD-dependent DNA ligase LigA [Clostridium difficile NAP07]
gi|296259274|gb|EFH06152.1| NAD-dependent DNA ligase LigA [Clostridium difficile NAP08]
gi|296429302|gb|EFH15174.1| NAD-dependent DNA ligase LigA [Clostridium difficile NAP07]
Length = 677
Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 34/57 (59%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E+ L++ +H + YY D+P +D YD++ + L +L+E+ PEL D P N VG
Sbjct: 9 EINKLIETINYHNERYYNQDSPEISDYEYDKLMKELISLEEEHPELKRIDSPTNRVG 65
>gi|260684853|ref|YP_003216138.1| DNA ligase [Clostridium difficile CD196]
gi|260688511|ref|YP_003219645.1| DNA ligase [Clostridium difficile R20291]
gi|260211016|emb|CBA66332.1| DNA ligase [Clostridium difficile CD196]
gi|260214528|emb|CBE07046.1| DNA ligase [Clostridium difficile R20291]
Length = 677
Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 34/57 (59%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E+ L++ +H + YY D+P +D YD++ + L +L+E+ PEL D P N VG
Sbjct: 9 EINKLIETINYHNERYYNQDSPEISDYEYDKLMKELISLEEEHPELKRIDSPTNRVG 65
>gi|241889713|ref|ZP_04777011.1| DNA ligase, NAD-dependent [Gemella haemolysans ATCC 10379]
gi|241863335|gb|EER67719.1| DNA ligase, NAD-dependent [Gemella haemolysans ATCC 10379]
Length = 663
Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 33/57 (57%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E+ LV + + YY DNP TD YD + ++L+ L+E++PEL E+ P VG
Sbjct: 7 EILKLVSLLNKYSYEYYVEDNPQITDTEYDTLYKQLEKLEEKYPELILENSPTQRVG 63
>gi|126700928|ref|YP_001089825.1| DNA ligase [Clostridium difficile 630]
gi|123362868|sp|Q180F3|DNLJ_CLOD6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
Length = 677
Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 34/57 (59%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E+ L++ +H + YY D+P +D YD++ + L +L+E+ PEL D P N VG
Sbjct: 9 EINKLIETINYHNERYYNQDSPEISDYEYDKLMKELISLEEEHPELKRIDSPTNRVG 65
>gi|254976908|ref|ZP_05273380.1| DNA ligase [Clostridium difficile QCD-66c26]
gi|255308381|ref|ZP_05352552.1| DNA ligase [Clostridium difficile ATCC 43255]
gi|255316048|ref|ZP_05357631.1| DNA ligase [Clostridium difficile QCD-76w55]
gi|255518705|ref|ZP_05386381.1| DNA ligase [Clostridium difficile QCD-97b34]
gi|255651827|ref|ZP_05398729.1| DNA ligase [Clostridium difficile QCD-37x79]
gi|306521614|ref|ZP_07407961.1| DNA ligase [Clostridium difficile QCD-32g58]
Length = 674
Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 34/57 (59%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E+ L++ +H + YY D+P +D YD++ + L +L+E+ PEL D P N VG
Sbjct: 6 EINKLIETINYHNERYYNQDSPEISDYEYDKLMKELISLEEEHPELKRIDSPTNRVG 62
>gi|328950509|ref|YP_004367844.1| DNA ligase [Marinithermus hydrothermalis DSM 14884]
gi|328450833|gb|AEB11734.1| DNA ligase [Marinithermus hydrothermalis DSM 14884]
Length = 676
Score = 43.5 bits (101), Expect = 0.011, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 34/65 (52%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+++ EA V L + +H YY LD+P +D YD + L AL+ ++P+L D P
Sbjct: 1 MTREEAKKRVLELRQAIRYHNYRYYVLDDPEISDAEYDALMRELKALEARYPDLVTPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQVVG 65
>gi|256847801|ref|ZP_05553246.1| DNA ligase, NAD-dependent [Lactobacillus coleohominis 101-4-CHN]
gi|256715490|gb|EEU30466.1| DNA ligase, NAD-dependent [Lactobacillus coleohominis 101-4-CHN]
Length = 674
Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 34/65 (52%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ EA E+ L + + K YY DNP D +YDR +RL L+ +FPEL D P
Sbjct: 6 ITLAEAKKEIGPLRQQLIQWGKEYYEQDNPSVEDYVYDRQYQRLVELEARFPELVTPDSP 65
Query: 114 WNTVG 118
VG
Sbjct: 66 TQRVG 70
>gi|282896837|ref|ZP_06304843.1| NAD-dependent DNA ligase [Raphidiopsis brookii D9]
gi|281198246|gb|EFA73136.1| NAD-dependent DNA ligase [Raphidiopsis brookii D9]
Length = 692
Score = 43.5 bits (101), Expect = 0.011, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 30/56 (53%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
VE L K+ YY LD+P+ D +YDR+ L L++++P L D P VG
Sbjct: 14 VEELRKLLQQAGYAYYVLDSPIMEDTIYDRLYRELQELEKKYPNLVTSDSPTQRVG 69
>gi|296445905|ref|ZP_06887856.1| DNA ligase, NAD-dependent [Methylosinus trichosporium OB3b]
gi|296256573|gb|EFH03649.1| DNA ligase, NAD-dependent [Methylosinus trichosporium OB3b]
Length = 713
Score = 43.5 bits (101), Expect = 0.011, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V LS A +E L + + + YY+ D+P +D YD + +R +AL++ FPEL +
Sbjct: 21 VAELSPRRAKLEHSRLAEEIAEYDRRYYQEDDPAISDAEYDALRQRYEALEKAFPELGGD 80
Query: 111 DHPWNTVG 118
TVG
Sbjct: 81 ASLTKTVG 88
>gi|182677699|ref|YP_001831845.1| DNA ligase, NAD-dependent [Beijerinckia indica subsp. indica ATCC
9039]
gi|254781257|sp|B2IGH4|DNLJ_BEII9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|182633582|gb|ACB94356.1| DNA ligase, NAD-dependent [Beijerinckia indica subsp. indica ATCC
9039]
Length = 699
Score = 43.5 bits (101), Expect = 0.011, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 34/70 (48%)
Query: 49 KKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF 108
K + SLS +A E L + H + YY+ D P +D YD + R +AL+ FPEL
Sbjct: 5 KPIESLSPAQAKREHRRLGEQITEHDRLYYQEDAPRVSDAEYDALRRRYEALETAFPELV 64
Query: 109 DEDHPWNTVG 118
+ +G
Sbjct: 65 SAESLTKKIG 74
>gi|327394702|dbj|BAK12124.1| DNA ligase LigA [Pantoea ananatis AJ13355]
Length = 672
Score = 43.5 bits (101), Expect = 0.011, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 25/47 (53%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+EQ P+L D P VG
Sbjct: 17 HHEYLYHVMDAPEVPDAEYDRLMRELRELEEQHPDLITPDSPTQRVG 63
>gi|291618312|ref|YP_003521054.1| LigA [Pantoea ananatis LMG 20103]
gi|291153342|gb|ADD77926.1| LigA [Pantoea ananatis LMG 20103]
Length = 672
Score = 43.5 bits (101), Expect = 0.011, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 25/47 (53%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+EQ P+L D P VG
Sbjct: 17 HHEYLYHVMDAPEVPDAEYDRLMRELRELEEQHPDLITPDSPTQRVG 63
>gi|332525978|ref|ZP_08402119.1| DNA ligase (NAD+) [Rubrivivax benzoatilyticus JA2]
gi|332109529|gb|EGJ10452.1| DNA ligase (NAD+) [Rubrivivax benzoatilyticus JA2]
Length = 686
Score = 43.1 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 26/48 (54%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
L +I HH YY LD P D YDR+ + L A++ + P+L D P
Sbjct: 13 LRRILSHHAHRYYVLDAPEIPDAEYDRLFQELQAIESEHPDLLTPDSP 60
>gi|33151983|ref|NP_873336.1| NAD-dependent DNA ligase LigA [Haemophilus ducreyi 35000HP]
gi|81423646|sp|Q7VMX7|DNLJ_HAEDU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|33148205|gb|AAP95725.1| DNA ligase [Haemophilus ducreyi 35000HP]
Length = 686
Score = 43.1 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
Y+ L+NPL D YDR+ +L +++Q+PEL D P VG
Sbjct: 32 YHVLNNPLVPDAEYDRLINQLKNIEQQYPELITPDSPTQRVG 73
>gi|192361192|ref|YP_001982383.1| DNA ligase, NAD-dependent [Cellvibrio japonicus Ueda107]
gi|254781281|sp|B3PGQ8|DNLJ_CELJU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|190687357|gb|ACE85035.1| DNA ligase, NAD-dependent [Cellvibrio japonicus Ueda107]
Length = 680
Score = 43.1 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 28/57 (49%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E+ L + +H YY LD P D YDR+ +RL L+ Q+P D P VG
Sbjct: 13 EIAQLREQIRYHNYRYYALDEPQIPDAEYDRLMQRLRELEAQYPASVTPDSPTQRVG 69
>gi|5733399|gb|AAD49562.1|AF126866_1 NAD-dependent DNA ligase [Pseudoalteromonas haloplanktis]
Length = 672
Score = 43.1 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 27/57 (47%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+V +L I H YY LD P D YDR+ L AL+ + PE D P VG
Sbjct: 8 QVNHLRIILEQHNYNYYVLDTPSIPDSEYDRLLRELSALETEHPEFLTADSPTQKVG 64
>gi|300779557|ref|ZP_07089415.1| NAD-dependent DNA ligase LigA [Chryseobacterium gleum ATCC 35910]
gi|300505067|gb|EFK36207.1| NAD-dependent DNA ligase LigA [Chryseobacterium gleum ATCC 35910]
Length = 667
Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+E L K H + YY+LD P TD +D + + L L+ ++PE +DE+ P VG
Sbjct: 9 IEQLRKELHQHNENYYQLDTPTITDFEFDMLLQELQDLEARYPEFYDENSPTVRVG 64
>gi|89900985|ref|YP_523456.1| DNA ligase [Rhodoferax ferrireducens T118]
gi|123397178|sp|Q21WC8|DNLJ_RHOFD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|89345722|gb|ABD69925.1| DNA ligase, NAD-dependent [Rhodoferax ferrireducens T118]
Length = 690
Score = 43.1 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 70 ALH-HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
ALH H YY D P D YDR+ + L A++ Q PEL D P VG
Sbjct: 25 ALHEHAHHYYVEDAPTIPDAEYDRMFQELQAIEAQHPELITPDSPTQRVG 74
>gi|238756322|ref|ZP_04617636.1| DNA ligase [Yersinia ruckeri ATCC 29473]
gi|238705475|gb|EEP97878.1| DNA ligase [Yersinia ruckeri ATCC 29473]
Length = 674
Score = 43.1 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ LD P D YDR+ L L+ Q PEL D P VG
Sbjct: 17 HHEHQYHVLDAPEIPDAEYDRLMGELRELEAQHPELITADSPTQRVG 63
>gi|83953544|ref|ZP_00962265.1| DNA ligase, NAD-dependent [Sulfitobacter sp. NAS-14.1]
gi|83841489|gb|EAP80658.1| DNA ligase, NAD-dependent [Sulfitobacter sp. NAS-14.1]
Length = 706
Score = 43.1 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 33/65 (50%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
LS+ EA E+ L + Y+ D P +D YDR+ R A++E+FP L D P
Sbjct: 10 LSEEEAKAELARLADLLGRANAAYHTQDAPDLSDAEYDRLKRRNQAIEERFPRLKRADSP 69
Query: 114 WNTVG 118
+ VG
Sbjct: 70 SDKVG 74
>gi|302670775|ref|YP_003830735.1| NAD-dependent DNA ligase LigA1 [Butyrivibrio proteoclasticus B316]
gi|302395248|gb|ADL34153.1| NAD-dependent DNA ligase LigA1 [Butyrivibrio proteoclasticus B316]
Length = 675
Score = 43.1 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 27/53 (50%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV HH YY D P +D YD++ RL ++ ++PEL D P VG
Sbjct: 15 LVSEIKHHMDLYYNQDEPEISDYEYDQLMIRLKKMESEYPELVSNDSPSQIVG 67
>gi|289208742|ref|YP_003460808.1| DNA ligase, NAD-dependent [Thioalkalivibrio sp. K90mix]
gi|288944373|gb|ADC72072.1| DNA ligase, NAD-dependent [Thioalkalivibrio sp. K90mix]
Length = 697
Score = 43.1 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 33/67 (49%)
Query: 52 TSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
T+ + GE +E L + HH YY LD+P +D +D + L+ L+ P+L D
Sbjct: 11 TTGAAGEVGERIEQLRRQIEHHNYRYYVLDDPEVSDAEFDALMRELEQLEADHPDLVTPD 70
Query: 112 HPWNTVG 118
P VG
Sbjct: 71 SPTQRVG 77
>gi|332638905|ref|ZP_08417768.1| NAD-dependent DNA ligase [Weissella cibaria KACC 11862]
Length = 678
Score = 43.1 bits (100), Expect = 0.013, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 37/74 (50%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
+D + + +++ EA E++ L + + YY D P D +YDR RL+AL+ +
Sbjct: 1 MDNFQDIATMTVIEAKAEIDALQQDLKQWAQEYYENDAPSVEDAVYDREYNRLEALEAAY 60
Query: 105 PELFDEDHPWNTVG 118
PEL D VG
Sbjct: 61 PELVTPDSITQQVG 74
>gi|308450080|ref|XP_003088175.1| hypothetical protein CRE_02776 [Caenorhabditis remanei]
gi|308249279|gb|EFO93231.1| hypothetical protein CRE_02776 [Caenorhabditis remanei]
Length = 1202
Score = 43.1 bits (100), Expect = 0.013, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 30/60 (50%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
A +E E L ++ YY L +D YD + RL+AL+ FPEL +D P VG
Sbjct: 179 ARVEAEQLTAEIERYRAAYYSEATSLVSDAQYDELFHRLEALERAFPELAGQDSPTQEVG 238
>gi|329115587|ref|ZP_08244309.1| DNA ligase [Acetobacter pomorum DM001]
gi|326695015|gb|EGE46734.1| DNA ligase [Acetobacter pomorum DM001]
Length = 710
Score = 43.1 bits (100), Expect = 0.013, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 33/66 (50%)
Query: 53 SLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDH 112
+++ +A E+E+L HH YYR D P +D YD + R DA+ Q P+ E+
Sbjct: 25 TMTLQQAREELEHLAAEIAHHNAAYYRNDAPEISDAEYDALRRRYDAIVAQHPQAEPENS 84
Query: 113 PWNTVG 118
VG
Sbjct: 85 AAQAVG 90
>gi|172036733|ref|YP_001803234.1| DNA ligase [Cyanothece sp. ATCC 51142]
gi|254781304|sp|B1WZL6|DNLJ_CYAA5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|171698187|gb|ACB51168.1| DNA ligase [Cyanothece sp. ATCC 51142]
Length = 676
Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 27/42 (64%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD+P+ D +YD++ LD+L+++ P+L D P VG
Sbjct: 25 YYVLDDPIMEDAVYDQLYRELDSLEKEHPQLITPDSPTQRVG 66
>gi|270307958|ref|YP_003330016.1| DNA ligase, NAD-dependent [Dehalococcoides sp. VS]
gi|270153850|gb|ACZ61688.1| DNA ligase, NAD-dependent [Dehalococcoides sp. VS]
Length = 680
Score = 43.1 bits (100), Expect = 0.014, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 29/57 (50%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E+E L + H + YY DNP +D YD + RL L+E PEL + P VG
Sbjct: 10 EIENLRREINRHNQLYYVQDNPEISDSEYDALLRRLKELEEAHPELVTPNSPTQRVG 66
>gi|308050127|ref|YP_003913693.1| DNA ligase, NAD-dependent [Ferrimonas balearica DSM 9799]
gi|307632317|gb|ADN76619.1| DNA ligase, NAD-dependent [Ferrimonas balearica DSM 9799]
Length = 685
Score = 43.1 bits (100), Expect = 0.014, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 30/61 (49%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+A +E L ++ + YY LDNP D YDR+ L AL+ + P L D P V
Sbjct: 12 QAKDRIEQLSQLLNDYNHQYYVLDNPSVPDAEYDRLMRELQALEAEHPALRQPDSPTQRV 71
Query: 118 G 118
G
Sbjct: 72 G 72
>gi|295107089|emb|CBL04632.1| DNA ligase, NAD-dependent [Gordonibacter pamelaeae 7-10-1-b]
Length = 731
Score = 43.1 bits (100), Expect = 0.014, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 13/89 (14%)
Query: 31 EAKFLPNKRAL-ESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGL 89
E + L ++RAL E+ D A ++ +L + E+E HH YY D P +DG
Sbjct: 27 EQQNLLDERALAEATSDPAARIEALRR-----EIE-------HHTYLYYAQDAPEISDGA 74
Query: 90 YDRVSERLDALQEQFPELFDEDHPWNTVG 118
+D + L L+ PEL D P VG
Sbjct: 75 FDSLMRELRELEAAHPELVDPSSPTQRVG 103
>gi|148652285|ref|YP_001279378.1| DNA ligase [Psychrobacter sp. PRwf-1]
gi|190359276|sp|A5WCN7|DNLJ_PSYWF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|148571369|gb|ABQ93428.1| DNA ligase, NAD-dependent [Psychrobacter sp. PRwf-1]
Length = 686
Score = 43.1 bits (100), Expect = 0.014, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 32/61 (52%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E + ++ L+ H YY +D P +D YD++ L L+E++PEL D P +V
Sbjct: 16 EVIAKMRTLIAQVRKHNNAYYVMDEPTISDNEYDQLRLSLIELEERYPELTQPDSPTASV 75
Query: 118 G 118
G
Sbjct: 76 G 76
>gi|326381521|ref|ZP_08203215.1| NAD-dependent DNA ligase LigA [Gordonia neofelifaecis NRRL B-59395]
gi|326199768|gb|EGD56948.1| NAD-dependent DNA ligase LigA [Gordonia neofelifaecis NRRL B-59395]
Length = 692
Score = 43.1 bits (100), Expect = 0.014, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HQ YY D P+ +DG +D + RL AL+++ PEL D P VG
Sbjct: 25 HQFRYYVQDAPVISDGEFDTLLRRLQALEDEHPELAVADSPTKLVG 70
>gi|218439827|ref|YP_002378156.1| DNA ligase, NAD-dependent [Cyanothece sp. PCC 7424]
gi|254781306|sp|B7K8U0|DNLJ_CYAP7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|218172555|gb|ACK71288.1| DNA ligase, NAD-dependent [Cyanothece sp. PCC 7424]
Length = 678
Score = 42.7 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LDNP+ D +YD++ L ++ Q+PEL D P VG
Sbjct: 26 YYVLDNPIMEDVVYDQLYRELQNIETQYPELITPDSPTQRVG 67
>gi|148243508|ref|YP_001228665.1| NAD-dependent DNA ligase LigA [Synechococcus sp. RCC307]
gi|166216253|sp|A5GWQ3|DNLJ_SYNR3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|147851818|emb|CAK29312.1| NAD-dependent DNA ligase [Synechococcus sp. RCC307]
Length = 675
Score = 42.7 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E+ L+ A H YY LD P F D +YDR+ L L++Q P+L D P VG
Sbjct: 13 ELRQLLNRAAHA---YYVLDAPEFEDAVYDRLYRELLDLEQQHPDLLSADSPTQRVG 66
>gi|317121135|ref|YP_004101138.1| DNA ligase, NAD-dependent [Thermaerobacter marianensis DSM 12885]
gi|315591115|gb|ADU50411.1| DNA ligase, NAD-dependent [Thermaerobacter marianensis DSM 12885]
Length = 764
Score = 42.7 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 23/47 (48%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH YY LD P D YD + L L+ +FPE+ D P VG
Sbjct: 37 HHDYLYYVLDRPEIDDAAYDALMRELRELEARFPEIVTPDSPTQRVG 83
>gi|254448715|ref|ZP_05062173.1| DNA ligase, NAD-dependent [gamma proteobacterium HTCC5015]
gi|198261723|gb|EDY86010.1| DNA ligase, NAD-dependent [gamma proteobacterium HTCC5015]
Length = 673
Score = 42.7 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY LD P D YDR+ L +L+ Q+PE +D P VG
Sbjct: 20 QHAHAYYVLDEPSIPDAEYDRLFRELQSLEAQYPESHSDDSPTQRVG 66
>gi|73667316|ref|YP_303332.1| NAD-dependent DNA ligase [Ehrlichia canis str. Jake]
gi|123732189|sp|Q3YRC1|DNLJ_EHRCJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|72394457|gb|AAZ68734.1| NAD-dependent DNA ligase [Ehrlichia canis str. Jake]
Length = 677
Score = 42.7 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 34/65 (52%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + EA +E++ L HH YY DNP TD YD + + + + E FPEL ++
Sbjct: 1 MKQEEAKLELDKLNSQIQHHDFLYYTQDNPQITDAEYDVLCHKRNLILESFPELASNNNY 60
Query: 114 WNTVG 118
+ VG
Sbjct: 61 QDNVG 65
>gi|254411541|ref|ZP_05025318.1| DNA ligase, NAD-dependent [Microcoleus chthonoplastes PCC 7420]
gi|196182042|gb|EDX77029.1| DNA ligase, NAD-dependent [Microcoleus chthonoplastes PCC 7420]
Length = 676
Score = 42.7 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY DNP+ D +YD++ L L+ Q+PEL D P VG
Sbjct: 22 YYVRDNPMMEDAVYDQLYRELQDLESQYPELVTPDSPTQRVG 63
>gi|90410985|ref|ZP_01218999.1| DNA ligase [Photobacterium profundum 3TCK]
gi|90328198|gb|EAS44509.1| DNA ligase [Photobacterium profundum 3TCK]
Length = 697
Score = 42.7 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 38/82 (46%)
Query: 37 NKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSER 96
N + S L K V S + +++ L + +H YY DNP D YDR+ ++
Sbjct: 9 NGKPKRSILTKTVLVGSEMSTDIQQQLDTLREQLAYHGHRYYVEDNPEIPDAEYDRMMQQ 68
Query: 97 LDALQEQFPELFDEDHPWNTVG 118
L AL+ PEL D P VG
Sbjct: 69 LLALEADHPELMSVDSPSQRVG 90
>gi|294011619|ref|YP_003545079.1| NAD-dependent DNA ligase [Sphingobium japonicum UT26S]
gi|292674949|dbj|BAI96467.1| NAD-dependent DNA ligase [Sphingobium japonicum UT26S]
Length = 711
Score = 42.7 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 33/68 (48%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
+TS+++ EA + L + H + Y+ D P TD YD + +AL+ FP L
Sbjct: 4 LTSMTEAEAANHLMRLAREIARHNRLYHDQDQPEITDAAYDALIRENNALEAAFPHLVRS 63
Query: 111 DHPWNTVG 118
D P VG
Sbjct: 64 DSPNAQVG 71
>gi|329912476|ref|ZP_08275756.1| DNA ligase [Oxalobacteraceae bacterium IMCC9480]
gi|327545605|gb|EGF30768.1| DNA ligase [Oxalobacteraceae bacterium IMCC9480]
Length = 679
Score = 42.7 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 24/46 (52%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY LDNP+ D YD + L+AL+ PEL D P VG
Sbjct: 23 HAHAYYVLDNPVIPDADYDLLFRELEALEASHPELVTADSPTRRVG 68
>gi|163751929|ref|ZP_02159142.1| DNA ligase, NAD-dependent [Shewanella benthica KT99]
gi|161328212|gb|EDP99377.1| DNA ligase, NAD-dependent [Shewanella benthica KT99]
Length = 690
Score = 42.7 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
E+E+L+ H Y+ LD+P+ TD YDR+ +L L+ +FP L
Sbjct: 11 EIEHLISEINEHDHRYHVLDDPIITDSEYDRLKIKLKKLENRFPAL 56
>gi|290508381|ref|ZP_06547752.1| DNA ligase, NAD-dependent [Klebsiella sp. 1_1_55]
gi|289777775|gb|EFD85772.1| DNA ligase, NAD-dependent [Klebsiella sp. 1_1_55]
Length = 671
Score = 42.7 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ Q PEL D P VG
Sbjct: 17 HHEYLYHVMDAPEVPDAEYDRLMRELRELESQHPELITPDSPTQRVG 63
>gi|161502427|ref|YP_001569539.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. arizonae
serovar 62:z4,z23:-- str. RSK2980]
gi|190359281|sp|A9MIG0|DNLJ_SALAR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|160863774|gb|ABX20397.1| hypothetical protein SARI_00461 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 671
Score = 42.7 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 25/47 (53%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L AL+ Q P+L D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRALEAQRPDLITPDSPTQRVG 63
>gi|6573451|pdb|1B04|A Chain A, Structure Of The Adenylation Domain Of An Nad+ Dependent
Ligase
gi|6573452|pdb|1B04|B Chain B, Structure Of The Adenylation Domain Of An Nad+ Dependent
Ligase
Length = 318
Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ + L A++EQ+PEL D P +G
Sbjct: 24 YYVLDRPSVPDAEYDRLMQELIAIEEQYPELKTSDSPTQRIG 65
>gi|300311482|ref|YP_003775574.1| NAD-dependent DNA ligase [Herbaspirillum seropedicae SmR1]
gi|300074267|gb|ADJ63666.1| NAD-dependent DNA ligase (contains BRCT domain type II) protein
[Herbaspirillum seropedicae SmR1]
Length = 688
Score = 42.7 bits (99), Expect = 0.017, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 23/46 (50%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY LD P D YDR+ + L AL+ PEL D P VG
Sbjct: 32 HNYSYYVLDQPSIPDAEYDRLFQELQALETAHPELLTPDSPTQRVG 77
>gi|330722383|gb|EGH00233.1| DNA ligase [gamma proteobacterium IMCC2047]
Length = 258
Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 28/57 (49%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
EVE L H YY LD P D YDR+ +L ++ Q PEL +D P VG
Sbjct: 9 EVEALRAQLNQHNYRYYVLDEPSIPDVEYDRLLRQLQTIEAQHPELISQDSPTQRVG 65
>gi|320102706|ref|YP_004178297.1| NAD-dependent DNA ligase [Isosphaera pallida ATCC 43644]
gi|319749988|gb|ADV61748.1| DNA ligase, NAD-dependent [Isosphaera pallida ATCC 43644]
Length = 896
Score = 42.7 bits (99), Expect = 0.017, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 31/56 (55%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+E L + HH + YY P+ +D YDR+ + L+AL+ + P+L D P VG
Sbjct: 18 IERLRREIEHHNRLYYVEAAPVISDAEYDRLVKDLEALEAERPDLVTPDSPTQRVG 73
>gi|206579402|ref|YP_002237241.1| DNA ligase, NAD-dependent [Klebsiella pneumoniae 342]
gi|288934177|ref|YP_003438236.1| DNA ligase, NAD-dependent [Klebsiella variicola At-22]
gi|254781350|sp|B5XVT4|DNLJ_KLEP3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|206568460|gb|ACI10236.1| DNA ligase, NAD-dependent [Klebsiella pneumoniae 342]
gi|288888906|gb|ADC57224.1| DNA ligase, NAD-dependent [Klebsiella variicola At-22]
Length = 671
Score = 42.7 bits (99), Expect = 0.017, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ Q PEL D P VG
Sbjct: 17 HHEYLYHVMDAPEVPDAEYDRLMRELRELESQHPELITPDSPTQRVG 63
>gi|111225216|ref|YP_716010.1| DNA ligase [Frankia alni ACN14a]
gi|122953782|sp|Q0RDH8|DNLJ_FRAAA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|111152748|emb|CAJ64491.1| DNA ligase [Frankia alni ACN14a]
Length = 771
Score = 42.7 bits (99), Expect = 0.017, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 24/46 (52%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY LD+P +D YDR+ L AL+E PEL D P V
Sbjct: 73 HAYRYYVLDSPTVSDAEYDRLMRELTALEEHHPELRTPDSPTQKVA 118
>gi|299529801|ref|ZP_07043234.1| DNA ligase, NAD-dependent [Comamonas testosteroni S44]
gi|298722215|gb|EFI63139.1| DNA ligase, NAD-dependent [Comamonas testosteroni S44]
Length = 708
Score = 42.7 bits (99), Expect = 0.017, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 24/41 (58%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
YY LD P DG YDRV ++L+AL+ +P L D P V
Sbjct: 47 YYVLDTPTVPDGEYDRVYQQLEALEGAYPALVTPDSPTQRV 87
>gi|268323600|emb|CBH37188.1| DNA ligase [uncultured archaeon]
Length = 667
Score = 42.7 bits (99), Expect = 0.017, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+H YY LD P +D YDR+ L+ L+ ++PEL D P +G
Sbjct: 23 YHNYRYYVLDEPEISDAEYDRLFVELEELERKYPELITPDSPTQRIG 69
>gi|264678823|ref|YP_003278730.1| DNA ligase, NAD-dependent [Comamonas testosteroni CNB-2]
gi|262209336|gb|ACY33434.1| DNA ligase, NAD-dependent [Comamonas testosteroni CNB-2]
Length = 708
Score = 42.7 bits (99), Expect = 0.017, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 24/41 (58%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
YY LD P DG YDRV ++L+AL+ +P L D P V
Sbjct: 47 YYVLDTPTVPDGEYDRVYQQLEALEGAYPALVTPDSPTQRV 87
>gi|319937197|ref|ZP_08011604.1| DNA ligase [Coprobacillus sp. 29_1]
gi|319807563|gb|EFW04156.1| DNA ligase [Coprobacillus sp. 29_1]
Length = 662
Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E +IE++ L+ + YY LDNP +D YDR+ + L A++ Q PE D P V
Sbjct: 4 ERLIEIKKLLN---EYNYQYYVLDNPSVSDQEYDRLMQELQAIENQHPEWLTADSPSQRV 60
Query: 118 G 118
G
Sbjct: 61 G 61
>gi|309389839|gb|ADO77719.1| DNA ligase, NAD-dependent [Halanaerobium praevalens DSM 2228]
Length = 670
Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 39/68 (57%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
+ +L+K +A ++ L + H+ Y+ LD+P +D +D++ + L L+ +FP+L E
Sbjct: 1 MINLNKEKASKKITALKEKIRKHEYKYFVLDDPSISDAEFDQLMQELIKLESEFPDLITE 60
Query: 111 DHPWNTVG 118
D P VG
Sbjct: 61 DSPTQRVG 68
>gi|240850882|ref|YP_002972282.1| DNA ligase [Bartonella grahamii as4aup]
gi|240268005|gb|ACS51593.1| DNA ligase [Bartonella grahamii as4aup]
Length = 719
Score = 42.7 bits (99), Expect = 0.018, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 33/66 (50%)
Query: 53 SLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDH 112
+L+ EA E+E+L K H Y R D P +D YD + R ++ FPEL D
Sbjct: 8 NLTAVEAESELEWLAKEIARHDVLYNRDDQPEISDAEYDALRRRNAEIEALFPELIRVDS 67
Query: 113 PWNTVG 118
P + +G
Sbjct: 68 PSHKIG 73
>gi|160934306|ref|ZP_02081693.1| hypothetical protein CLOLEP_03177 [Clostridium leptum DSM 753]
gi|156866979|gb|EDO60351.1| hypothetical protein CLOLEP_03177 [Clostridium leptum DSM 753]
Length = 661
Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 26/47 (55%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+H K YY DNP TD YD + L+ ++ +PEL ED P VG
Sbjct: 19 YHAKKYYEEDNPEITDYEYDMMLRELEGIELAYPELVTEDSPTQRVG 65
>gi|320105506|ref|YP_004181096.1| NAD-dependent DNA ligase [Terriglobus saanensis SP1PR4]
gi|319924027|gb|ADV81102.1| DNA ligase, NAD-dependent [Terriglobus saanensis SP1PR4]
Length = 694
Score = 42.7 bits (99), Expect = 0.018, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 25/47 (53%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ YY LD P +D YD + L AL+ + PEL + P VG
Sbjct: 16 HHEHAYYVLDKPEISDAQYDALVNLLKALETEHPELVTPESPTQRVG 62
>gi|217979603|ref|YP_002363750.1| DNA ligase, NAD-dependent [Methylocella silvestris BL2]
gi|254781370|sp|B8ETN6|DNLJ_METSB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|217504979|gb|ACK52388.1| DNA ligase, NAD-dependent [Methylocella silvestris BL2]
Length = 700
Score = 42.7 bits (99), Expect = 0.018, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 48 AKKVTSLSKGEAMIEVEYL-VKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
AK + +++ +A E L +IA H + YYR D P +D YDR+ R L+ FPE
Sbjct: 3 AKPIDAMTLAQARREHSRLGAEIAAHDAR-YYREDAPTVSDAEYDRLRRRYGELESAFPE 61
Query: 107 LFDEDHPWNTVG 118
L D VG
Sbjct: 62 LASPDSLTKKVG 73
>gi|237733138|ref|ZP_04563619.1| conserved hypothetical protein [Mollicutes bacterium D7]
gi|229383820|gb|EEO33911.1| conserved hypothetical protein [Coprobacillus sp. D7]
Length = 664
Score = 42.7 bits (99), Expect = 0.018, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 25/48 (52%)
Query: 71 LHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L+H YY DNP TD YD + + L L+++ PE D P VG
Sbjct: 15 LYHNDRYYNQDNPEITDYEYDMMMQELKGLEQKHPEYITSDSPTQKVG 62
>gi|167756540|ref|ZP_02428667.1| hypothetical protein CLORAM_02077 [Clostridium ramosum DSM 1402]
gi|167702715|gb|EDS17294.1| hypothetical protein CLORAM_02077 [Clostridium ramosum DSM 1402]
Length = 664
Score = 42.7 bits (99), Expect = 0.018, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 25/48 (52%)
Query: 71 LHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L+H YY DNP TD YD + + L L+++ PE D P VG
Sbjct: 15 LYHNDRYYNQDNPEITDYEYDMMMQELKGLEQKHPEYITSDSPTQKVG 62
>gi|332532506|ref|ZP_08408384.1| DNA ligase [Pseudoalteromonas haloplanktis ANT/505]
gi|332038149|gb|EGI74596.1| DNA ligase [Pseudoalteromonas haloplanktis ANT/505]
Length = 672
Score = 42.7 bits (99), Expect = 0.018, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 26/57 (45%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ +L H YY LD P D YDR+ L AL+ Q PE D P VG
Sbjct: 8 QINHLRTTLEQHNYNYYVLDTPSIPDSEYDRLLRELSALEMQHPEFLTADSPTQKVG 64
>gi|118594798|ref|ZP_01552145.1| DNA ligase, NAD-dependent [Methylophilales bacterium HTCC2181]
gi|118440576|gb|EAV47203.1| DNA ligase, NAD-dependent [Methylophilales bacterium HTCC2181]
Length = 671
Score = 42.7 bits (99), Expect = 0.018, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L K+ H YY LDNPL +D +D++ + A+++ PEL D P VG
Sbjct: 14 LKKLISEHNYHYYVLDNPLISDAEFDKIFLEIKAIEDLNPELITIDSPTQRVG 66
>gi|54308062|ref|YP_129082.1| NAD-dependent DNA ligase LigA [Photobacterium profundum SS9]
gi|81615410|sp|Q6LTU5|DNLJ_PHOPR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|46912488|emb|CAG19280.1| putative NAD-dependent DNA ligase [Photobacterium profundum SS9]
Length = 676
Score = 42.7 bits (99), Expect = 0.018, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 26/47 (55%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+H YY DNP D YDR+ ++L AL+ + PEL D P VG
Sbjct: 23 YHGHRYYVEDNPEIPDAEYDRMMQQLLALEAEHPELMSVDSPSQRVG 69
>gi|323140467|ref|ZP_08075395.1| DNA ligase (NAD+) [Phascolarctobacterium sp. YIT 12067]
gi|322415035|gb|EFY05826.1| DNA ligase (NAD+) [Phascolarctobacterium sp. YIT 12067]
Length = 679
Score = 42.7 bits (99), Expect = 0.019, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 31/59 (52%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ E + L + H++ YY LD P TD YDR+ RL L+ ++P+ D P VG
Sbjct: 15 LAEADKLRREIRHNEYLYYVLDAPEITDAEYDRMMVRLRELEARYPDSIPADSPTQRVG 73
>gi|238063192|ref|ZP_04607901.1| DNA ligase, NAD-dependent [Micromonospora sp. ATCC 39149]
gi|237885003|gb|EEP73831.1| DNA ligase, NAD-dependent [Micromonospora sp. ATCC 39149]
Length = 702
Score = 42.4 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 25/46 (54%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HQ YY LD P +D +DR L+AL+ +FP L D P +G
Sbjct: 31 HQYRYYVLDAPTVSDAEFDRQLRELEALEAEFPALRTPDSPTQRIG 76
>gi|220906114|ref|YP_002481425.1| NAD-dependent DNA ligase LigA [Cyanothece sp. PCC 7425]
gi|254781305|sp|B8HV17|DNLJ_CYAP4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|219862725|gb|ACL43064.1| DNA ligase, NAD-dependent [Cyanothece sp. PCC 7425]
Length = 738
Score = 42.4 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+ ++E+ LV+ A + YY LD P+ D +YD++ L L+ Q+PEL D P V
Sbjct: 22 QRVLELRQLVQRASYA---YYVLDAPILEDVVYDQLYRELQDLETQYPELLTPDSPTQRV 78
Query: 118 G 118
G
Sbjct: 79 G 79
>gi|163868703|ref|YP_001609915.1| NAD-dependent DNA ligase LigA [Bartonella tribocorum CIP 105476]
gi|190359235|sp|A9IW95|DNLJ_BART1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|161018362|emb|CAK01920.1| DNA ligase [Bartonella tribocorum CIP 105476]
Length = 719
Score = 42.4 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 34/68 (50%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
+ +L+ EA E+E+L K H Y R D P +D YD + R ++ FPEL
Sbjct: 6 IKNLTVVEAERELEWLAKEIARHDVLYNRDDQPEISDAEYDALRRRNAEIEALFPELIRV 65
Query: 111 DHPWNTVG 118
D P + +G
Sbjct: 66 DSPSHKIG 73
>gi|283786048|ref|YP_003365913.1| DNA ligase [Citrobacter rodentium ICC168]
gi|282949502|emb|CBG89116.1| DNA ligase [Citrobacter rodentium ICC168]
Length = 671
Score = 42.4 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ Q PEL D P VG
Sbjct: 17 HHEYLYHVMDAPEVPDAEYDRLMRELRELEAQHPELITPDSPTQRVG 63
>gi|261340751|ref|ZP_05968609.1| DNA ligase, NAD-dependent [Enterobacter cancerogenus ATCC 35316]
gi|288317173|gb|EFC56111.1| DNA ligase, NAD-dependent [Enterobacter cancerogenus ATCC 35316]
Length = 671
Score = 42.4 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ Q PEL D P VG
Sbjct: 17 HHEYLYHVMDAPEVPDAEYDRLMRELRELEAQHPELITPDSPTQRVG 63
>gi|159897339|ref|YP_001543586.1| DNA ligase, NAD-dependent [Herpetosiphon aurantiacus ATCC 23779]
gi|254781348|sp|A9AXP4|DNLJ_HERA2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|159890378|gb|ABX03458.1| DNA ligase, NAD-dependent [Herpetosiphon aurantiacus ATCC 23779]
Length = 673
Score = 42.4 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH YY LD PL +D YD + L A++ ++PEL D P VG
Sbjct: 23 HH---YYTLDAPLVSDAQYDSLLNELRAIEAEYPELRTPDSPTQRVG 66
>gi|227535466|ref|ZP_03965515.1| DNA ligase (polydeoxyribonucleotide synthase [Lactobacillus
paracasei subsp. paracasei ATCC 25302]
gi|227186876|gb|EEI66943.1| DNA ligase (polydeoxyribonucleotide synthase [Lactobacillus
paracasei subsp. paracasei ATCC 25302]
Length = 674
Score = 42.4 bits (98), Expect = 0.020, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 32/71 (45%)
Query: 48 AKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
AK + EA EVE L K + YY D P TD +YD L AL+ +P+L
Sbjct: 3 AKPAAQFTLEEAQAEVEKLRKQLNQWRLEYYTKDAPTVTDNVYDDHYRDLQALEAAYPKL 62
Query: 108 FDEDHPWNTVG 118
D P VG
Sbjct: 63 VTPDSPTQEVG 73
>gi|257060505|ref|YP_003138393.1| DNA ligase, NAD-dependent [Cyanothece sp. PCC 8802]
gi|256590671|gb|ACV01558.1| DNA ligase, NAD-dependent [Cyanothece sp. PCC 8802]
Length = 674
Score = 42.4 bits (98), Expect = 0.020, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LDNP+ D +YD++ L L+ Q+P L D P VG
Sbjct: 26 YYVLDNPIMEDSVYDQLYRELQDLESQYPILITPDSPTQRVG 67
>gi|163794455|ref|ZP_02188426.1| NAD-dependent DNA ligase [alpha proteobacterium BAL199]
gi|159180179|gb|EDP64702.1| NAD-dependent DNA ligase [alpha proteobacterium BAL199]
Length = 696
Score = 42.4 bits (98), Expect = 0.020, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 32/66 (48%)
Query: 48 AKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
K V LS EA E+ L + Y+ D P+ TD YD + R A++E+FP+L
Sbjct: 9 GKPVEELSDAEAKAELRRLSDAISEADRQYHVEDAPVLTDAEYDALRRRNQAIEERFPDL 68
Query: 108 FDEDHP 113
D P
Sbjct: 69 KLADSP 74
>gi|148658591|ref|YP_001278796.1| DNA ligase [Roseiflexus sp. RS-1]
gi|166216236|sp|A5V1U3|DNLJ_ROSS1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|148570701|gb|ABQ92846.1| DNA ligase, NAD-dependent [Roseiflexus sp. RS-1]
Length = 726
Score = 42.4 bits (98), Expect = 0.020, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 28/56 (50%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
VE L + +H YY LD P+ +D YD + L AL+ PEL D P VG
Sbjct: 10 VEALREQIRYHNYRYYVLDEPVISDAEYDALMRELRALEAAHPELVTPDSPTQRVG 65
>gi|218248171|ref|YP_002373542.1| NAD-dependent DNA ligase [Cyanothece sp. PCC 8801]
gi|254781307|sp|B7K0A2|DNLJ_CYAP8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|218168649|gb|ACK67386.1| DNA ligase, NAD-dependent [Cyanothece sp. PCC 8801]
Length = 674
Score = 42.4 bits (98), Expect = 0.020, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LDNP+ D +YD++ L L+ Q+P L D P VG
Sbjct: 26 YYVLDNPIMEDSVYDQLYRELQDLESQYPILITPDSPTQRVG 67
>gi|317180385|dbj|BAJ58171.1| NAD-dependent DNA ligase LigA [Helicobacter pylori F32]
Length = 656
Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S+ E + +EYL ++ HH YY LD+P+ +D +YD++ + L A +E+ P + P
Sbjct: 4 SQKEYLERIEYLNTLS-HH---YYNLDDPIVSDAVYDKLYQELKAYEEKNPNSIQANSPT 59
Query: 115 NTVG 118
VG
Sbjct: 60 QKVG 63
>gi|313673736|ref|YP_004051847.1| DNA ligase, nad-dependent [Calditerrivibrio nitroreducens DSM
19672]
gi|312940492|gb|ADR19684.1| DNA ligase, NAD-dependent [Calditerrivibrio nitroreducens DSM
19672]
Length = 655
Score = 42.4 bits (98), Expect = 0.020, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
+ + LVK HH YY L++P +D YD + ++L ++E+ PE D P VG+
Sbjct: 7 DYDRLVKELNHHCIRYYLLNDPAISDAKYDNLYKQLRKIEEEHPEWISPDSPTQRVGF 64
>gi|317153517|ref|YP_004121565.1| DNA ligase, NAD-dependent [Desulfovibrio aespoeensis Aspo-2]
gi|316943768|gb|ADU62819.1| DNA ligase, NAD-dependent [Desulfovibrio aespoeensis Aspo-2]
Length = 678
Score = 42.4 bits (98), Expect = 0.020, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 32/65 (49%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ E + +L + HH YY LD+P +D YD + L AL+ PEL D + P
Sbjct: 1 MASSEIIDRAAWLRERIEHHNHRYYVLDDPEISDAEYDALFRELAALEAAHPELDDANSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TRRVG 65
>gi|291613759|ref|YP_003523916.1| DNA ligase, NAD-dependent [Sideroxydans lithotrophicus ES-1]
gi|291583871|gb|ADE11529.1| DNA ligase, NAD-dependent [Sideroxydans lithotrophicus ES-1]
Length = 701
Score = 42.4 bits (98), Expect = 0.020, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 22/43 (51%)
Query: 76 WYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
WYY D P D YD++ L AL+ Q PEL D P VG
Sbjct: 23 WYYVKDMPRIPDAEYDKLFRELQALEAQHPELLASDSPTQRVG 65
>gi|83942325|ref|ZP_00954786.1| DNA ligase, NAD-dependent [Sulfitobacter sp. EE-36]
gi|83846418|gb|EAP84294.1| DNA ligase, NAD-dependent [Sulfitobacter sp. EE-36]
Length = 706
Score = 42.4 bits (98), Expect = 0.021, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 33/65 (50%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
LS+ EA E+ L + Y+ D P +D YDR+ R A++E+FP L D P
Sbjct: 10 LSEEEAKAELARLADLLGRANTAYHTQDAPDLSDAEYDRLKRRNQAIEERFPGLKRADSP 69
Query: 114 WNTVG 118
+ VG
Sbjct: 70 SDKVG 74
>gi|83647417|ref|YP_435852.1| DNA ligase, NAD-dependent [Hahella chejuensis KCTC 2396]
gi|123767368|sp|Q2SD47|DNLJ_HAHCH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|83635460|gb|ABC31427.1| DNA ligase, NAD-dependent [Hahella chejuensis KCTC 2396]
Length = 683
Score = 42.4 bits (98), Expect = 0.021, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY LD+P D YDR+ RL ++ +FP+ D P VG
Sbjct: 22 HNYRYYTLDDPSIPDAEYDRLMRRLREIEAEFPQTITPDSPTQRVG 67
>gi|257784913|ref|YP_003180130.1| DNA ligase, NAD-dependent [Atopobium parvulum DSM 20469]
gi|257473420|gb|ACV51539.1| DNA ligase, NAD-dependent [Atopobium parvulum DSM 20469]
Length = 705
Score = 42.4 bits (98), Expect = 0.021, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
+ +LS E E L +I H YY LDNP TD +DR+ L L+ +PEL E
Sbjct: 1 MAALSPKETARAAE-LNRILNHAAYAYYALDNPELTDAEFDRLLIELQQLEAAYPELITE 59
Query: 111 DHPWNTVG 118
D VG
Sbjct: 60 DSYTQRVG 67
>gi|94984803|ref|YP_604167.1| DNA ligase, NAD-dependent [Deinococcus geothermalis DSM 11300]
gi|122986680|sp|Q1J0I6|DNLJ_DEIGD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|94555084|gb|ABF44998.1| DNA ligase, NAD-dependent [Deinococcus geothermalis DSM 11300]
Length = 684
Score = 42.4 bits (98), Expect = 0.021, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 24/46 (52%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H + YY LD P D YDR+ L AL+ PE E+ P TVG
Sbjct: 34 HNRAYYELDAPEIPDDEYDRLVRELRALEAAHPEWVAENSPAQTVG 79
>gi|307546309|ref|YP_003898788.1| DNA ligase, NAD-dependent [Halomonas elongata DSM 2581]
gi|307218333|emb|CBV43603.1| DNA ligase, NAD-dependent [Halomonas elongata DSM 2581]
Length = 700
Score = 42.4 bits (98), Expect = 0.021, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P TD YDR RL ++ ++PEL D P VG
Sbjct: 44 YYVLDEPRMTDADYDRKLRRLQEIETEYPELVRPDSPTQRVG 85
>gi|134094553|ref|YP_001099628.1| DNA ligase [Herminiimonas arsenicoxydans]
gi|166215813|sp|A4G4R4|DNLJ_HERAR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|133738456|emb|CAL61501.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Herminiimonas
arsenicoxydans]
Length = 696
Score = 42.4 bits (98), Expect = 0.022, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 24/46 (52%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY LDNP+ D YD++ L AL+ PEL D P VG
Sbjct: 41 HNYAYYVLDNPIVPDAEYDQLFRELQALEASHPELLVFDSPTQRVG 86
>gi|261838144|gb|ACX97910.1| DNA ligase [Helicobacter pylori 51]
Length = 656
Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S+ E + +EYL ++ HH YY LD+P+ +D LYD + + L A +E+ P + P
Sbjct: 4 SQKEYLERIEYLNTLS-HH---YYNLDDPIVSDALYDELYQELKAYEEKNPNGIQANSPT 59
Query: 115 NTVG 118
VG
Sbjct: 60 QKVG 63
>gi|315223456|ref|ZP_07865313.1| NAD-dependent DNA ligase LigA [Capnocytophaga ochracea F0287]
gi|314946629|gb|EFS98620.1| NAD-dependent DNA ligase LigA [Capnocytophaga ochracea F0287]
Length = 662
Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY LDNP +D +D+ + L AL++ +PE +DE+ P VG
Sbjct: 15 HNYNYYVLDNPTISDYEFDQKLKELQALEQAYPEFYDENSPTVRVG 60
>gi|300173629|ref|YP_003772795.1| DNA ligase, NAD-dependent [Leuconostoc gasicomitatum LMG 18811]
gi|299888008|emb|CBL91976.1| DNA ligase, NAD-dependent [Leuconostoc gasicomitatum LMG 18811]
Length = 681
Score = 42.4 bits (98), Expect = 0.022, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 35/74 (47%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
L + K + LS+ A E+ L + YY D P+ D +YD + RL AL+ F
Sbjct: 2 LPELKPIEKLSREAAQHEIAKLQDDLRQYGIAYYEQDAPIVEDYIYDALYARLVALETVF 61
Query: 105 PELFDEDHPWNTVG 118
P+ + D P VG
Sbjct: 62 PQFINPDSPTQNVG 75
>gi|87199755|ref|YP_497012.1| DNA ligase, NAD-dependent [Novosphingobium aromaticivorans DSM
12444]
gi|123763512|sp|Q2G7J5|DNLJ_NOVAD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|87135436|gb|ABD26178.1| DNA ligase, NAD-dependent [Novosphingobium aromaticivorans DSM
12444]
Length = 721
Score = 42.4 bits (98), Expect = 0.022, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 34/68 (50%)
Query: 52 TSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
++L++ EA E+ L + H + Y+ D+P TD YD + R L+ FP L D
Sbjct: 4 SALTEAEAANELMRLARQIAKHNRLYHAEDSPEITDAEYDALVRRNAELEAAFPHLIRPD 63
Query: 112 HPWNTVGY 119
P +G+
Sbjct: 64 SPSAQIGH 71
>gi|297616809|ref|YP_003701968.1| DNA ligase, NAD-dependent [Syntrophothermus lipocalidus DSM 12680]
gi|297144646|gb|ADI01403.1| DNA ligase, NAD-dependent [Syntrophothermus lipocalidus DSM 12680]
Length = 668
Score = 42.4 bits (98), Expect = 0.023, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 25/46 (54%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY LD PL +D YDR+ L L++ +P+L D P VG
Sbjct: 18 HDYHYYVLDQPLISDAEYDRLFRELVELEQAYPDLVTPDSPTQRVG 63
>gi|256820386|ref|YP_003141665.1| DNA ligase, NAD-dependent [Capnocytophaga ochracea DSM 7271]
gi|256581969|gb|ACU93104.1| DNA ligase, NAD-dependent [Capnocytophaga ochracea DSM 7271]
Length = 662
Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY LDNP +D +D+ + L AL++ +PE +DE+ P VG
Sbjct: 15 HNYNYYVLDNPTISDYEFDQKLKELQALEQAYPEFYDENSPTVRVG 60
>gi|310768269|gb|ADP13219.1| NAD-dependent DNA ligase LigA [Erwinia sp. Ejp617]
Length = 670
Score = 42.4 bits (98), Expect = 0.023, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ +L + H++ Y+ LD P D YDR+ L L+ Q PEL D P VG
Sbjct: 7 KITHLRTLLRHYEYQYHVLDAPAVPDAEYDRLMGELRELEAQHPELLTSDSPTQRVG 63
>gi|260576789|ref|ZP_05844774.1| DNA ligase, NAD-dependent [Rhodobacter sp. SW2]
gi|259021041|gb|EEW24352.1| DNA ligase, NAD-dependent [Rhodobacter sp. SW2]
Length = 705
Score = 42.4 bits (98), Expect = 0.023, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 49 KKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF 108
K + L++ EA +E + L + Y++ D P TD YD + RL A++ FP+L
Sbjct: 5 KAIEQLTEAEAAVEWQELARAVAQANIDYHQNDAPKLTDATYDAMKRRLAAIEVLFPQL- 63
Query: 109 DEDHPWNTVG 118
D P + VG
Sbjct: 64 ATDSPTSKVG 73
>gi|149173204|ref|ZP_01851835.1| DNA ligase [Planctomyces maris DSM 8797]
gi|148848010|gb|EDL62342.1| DNA ligase [Planctomyces maris DSM 8797]
Length = 671
Score = 42.4 bits (98), Expect = 0.023, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 29/57 (50%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E+E L K HH + YY P TD YDR+ +RL+ L+ PE + P VG
Sbjct: 6 EIEELRKQLEHHNRLYYLDAKPEITDREYDRLMKRLEQLETDHPEYDSPESPTKKVG 62
>gi|119476275|ref|ZP_01616626.1| DNA ligase [marine gamma proteobacterium HTCC2143]
gi|119450139|gb|EAW31374.1| DNA ligase [marine gamma proteobacterium HTCC2143]
Length = 781
Score = 42.4 bits (98), Expect = 0.023, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
+T +S + IE E + LH+ + Y+ LD P D YDR+ +L L+ +FP+
Sbjct: 1 MTEISDPKQQIE-ELRSTVNLHNYR-YHALDEPTVPDAEYDRLIRQLQVLEAKFPQFITN 58
Query: 111 DHPWNTVG 118
D P VG
Sbjct: 59 DSPTQRVG 66
>gi|146312580|ref|YP_001177654.1| NAD-dependent DNA ligase LigA [Enterobacter sp. 638]
gi|190359255|sp|A4WD23|DNLJ_ENT38 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|145319456|gb|ABP61603.1| DNA ligase, NAD-dependent [Enterobacter sp. 638]
Length = 671
Score = 42.4 bits (98), Expect = 0.023, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ Q PEL D P VG
Sbjct: 17 HHEYLYHVMDAPEVPDAEYDRLMRELRELEAQHPELVTPDSPTQRVG 63
>gi|121604718|ref|YP_982047.1| DNA ligase [Polaromonas naphthalenivorans CJ2]
gi|166216226|sp|A1VN98|DNLJ_POLNA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|120593687|gb|ABM37126.1| DNA ligase, NAD-dependent [Polaromonas naphthalenivorans CJ2]
Length = 707
Score = 42.4 bits (98), Expect = 0.023, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 23/46 (50%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY LD P D YDR+ + L AL+ PEL D P VG
Sbjct: 34 HAHRYYVLDEPSIPDAEYDRLFKELQALEAAHPELLTPDSPTQRVG 79
>gi|94986686|ref|YP_594619.1| NAD-dependent DNA ligase [Lawsonia intracellularis PHE/MN1-00]
gi|123385090|sp|Q1MRS8|DNLJ_LAWIP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|94730935|emb|CAJ54298.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Lawsonia
intracellularis PHE/MN1-00]
Length = 682
Score = 42.4 bits (98), Expect = 0.024, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 30/66 (45%)
Query: 53 SLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDH 112
SL + V L K HH YY LD+P +D YD+ + L L+ FP L +
Sbjct: 9 SLPSKKEKQRVRELRKFINHHNYLYYTLDDPEISDSEYDKAFQELLTLENTFPSLKTNNS 68
Query: 113 PWNTVG 118
P VG
Sbjct: 69 PTQKVG 74
>gi|269127766|ref|YP_003301136.1| DNA ligase, NAD-dependent [Thermomonospora curvata DSM 43183]
gi|268312724|gb|ACY99098.1| DNA ligase, NAD-dependent [Thermomonospora curvata DSM 43183]
Length = 722
Score = 42.4 bits (98), Expect = 0.024, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P +D YDR+ L L+E+ PEL D P VG
Sbjct: 29 YYVLDRPTLSDAEYDRLMRELRELEERHPELVTPDSPTQRVG 70
>gi|157371681|ref|YP_001479670.1| NAD-dependent DNA ligase LigA [Serratia proteamaculans 568]
gi|190359284|sp|A8GHF2|DNLJ_SERP5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|157323445|gb|ABV42542.1| DNA ligase, NAD-dependent [Serratia proteamaculans 568]
Length = 673
Score = 42.0 bits (97), Expect = 0.024, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ LD P D YDR+ L AL+ PEL D P VG
Sbjct: 17 HHEYQYHVLDAPEVPDAEYDRLMGELRALESAHPELITADSPTQRVG 63
>gi|56751245|ref|YP_171946.1| NAD-dependent DNA ligase LigA [Synechococcus elongatus PCC 6301]
gi|81299088|ref|YP_399296.1| NAD-dependent DNA ligase LigA [Synechococcus elongatus PCC 7942]
gi|81596046|sp|Q5N2P4|DNLJ_SYNP6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|123728245|sp|Q31RL0|DNLJ_SYNE7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|56686204|dbj|BAD79426.1| DNA ligase [Synechococcus elongatus PCC 6301]
gi|81167969|gb|ABB56309.1| DNA ligase, NAD-dependent [Synechococcus elongatus PCC 7942]
Length = 679
Score = 42.0 bits (97), Expect = 0.025, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P+ D +YDR+ L L++Q P L D P VG
Sbjct: 31 YYVLDQPVMEDAVYDRLYRELQDLEQQHPSLITPDSPTQRVG 72
>gi|296104078|ref|YP_003614224.1| NAD-dependent DNA ligase LigA [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|295058537|gb|ADF63275.1| NAD-dependent DNA ligase LigA [Enterobacter cloacae subsp. cloacae
ATCC 13047]
Length = 671
Score = 42.0 bits (97), Expect = 0.025, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ Q PEL D P VG
Sbjct: 17 HHEYLYHVMDAPEVPDAEYDRLMRELRDLEAQHPELITPDSPTQRVG 63
>gi|225873424|ref|YP_002754883.1| DNA ligase, NAD-dependent [Acidobacterium capsulatum ATCC 51196]
gi|254781243|sp|C1F7S7|DNLJ_ACIC5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|225792636|gb|ACO32726.1| DNA ligase, NAD-dependent [Acidobacterium capsulatum ATCC 51196]
Length = 677
Score = 42.0 bits (97), Expect = 0.025, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+S A ++E L + HH+ YY D P D +D + +L L+ + PEL D P
Sbjct: 1 MSHASAAQQIESLRESIRHHEYLYYVQDQPEIDDLAFDELMRKLQRLEAEHPELITPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|328542977|ref|YP_004303086.1| DNA ligase, NAD(+)-dependent [polymorphum gilvum SL003B-26A1]
gi|326412723|gb|ADZ69786.1| DNA ligase, NAD(+)-dependent [Polymorphum gilvum SL003B-26A1]
Length = 721
Score = 42.0 bits (97), Expect = 0.025, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 69 IALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
IA H Q+ Y+ D P +D YD + R A++E+FP+L ED P +G
Sbjct: 29 IAAHDQR-YFAEDAPTVSDAEYDALRRRNAAIEERFPDLVREDSPSARIG 77
>gi|294661389|ref|YP_003573265.1| hypothetical protein Aasi_1926 [Candidatus Amoebophilus asiaticus
5a2]
gi|254781251|sp|C3L496|DNLJ_AMOA5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|227336540|gb|ACP21137.1| hypothetical protein Aasi_1926 [Candidatus Amoebophilus asiaticus
5a2]
Length = 671
Score = 42.0 bits (97), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K +A E++ L + +H K YY P +D +D++ E+L AL+ QFP+L + P
Sbjct: 1 MDKEQARKEIKRLTALVAYHNKLYYEEAQPEISDYEFDQLLEKLIALENQFPDLRLPNSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|116748867|ref|YP_845554.1| DNA ligase, NAD-dependent [Syntrophobacter fumaroxidans MPOB]
gi|116697931|gb|ABK17119.1| DNA ligase, NAD-dependent [Syntrophobacter fumaroxidans MPOB]
Length = 694
Score = 42.0 bits (97), Expect = 0.025, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 29/61 (47%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+A +E L + HH YY LD P +D YD + L L+E +P L D P V
Sbjct: 25 KAHARIEALREEIRHHNYLYYVLDRPEISDEAYDGLFRELVRLEESYPALITPDSPTQRV 84
Query: 118 G 118
G
Sbjct: 85 G 85
>gi|166216279|sp|A0LI67|DNLJ_SYNFM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
Length = 675
Score = 42.0 bits (97), Expect = 0.025, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 29/61 (47%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+A +E L + HH YY LD P +D YD + L L+E +P L D P V
Sbjct: 6 KAHARIEALREEIRHHNYLYYVLDRPEISDEAYDGLFRELVRLEESYPALITPDSPTQRV 65
Query: 118 G 118
G
Sbjct: 66 G 66
>gi|323136604|ref|ZP_08071685.1| DNA ligase, NAD-dependent [Methylocystis sp. ATCC 49242]
gi|322397921|gb|EFY00442.1| DNA ligase, NAD-dependent [Methylocystis sp. ATCC 49242]
Length = 705
Score = 42.0 bits (97), Expect = 0.026, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 32/68 (47%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V LS EA E L + + + YYR D PL D YD R +AL++ FPEL
Sbjct: 12 VDELSPAEARAEHARLGEDIARYDEAYYREDAPLVPDAEYDAARRRYEALEKAFPELVTP 71
Query: 111 DHPWNTVG 118
+ VG
Sbjct: 72 ESLTRKVG 79
>gi|328885211|emb|CCA58450.1| DNA ligase [Streptomyces venezuelae ATCC 10712]
Length = 726
Score = 42.0 bits (97), Expect = 0.026, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H+ YY D P+ +DG +D++ L+AL+E++PEL D P V
Sbjct: 26 HRFRYYVKDQPVISDGEFDKLLRALEALEEEYPELRTPDSPTQKVA 71
>gi|258645494|ref|ZP_05732963.1| DNA ligase, NAD-dependent [Dialister invisus DSM 15470]
gi|260402847|gb|EEW96394.1| DNA ligase, NAD-dependent [Dialister invisus DSM 15470]
Length = 669
Score = 42.0 bits (97), Expect = 0.026, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 32/62 (51%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
E + + E L K +H YY LD P TD +DR+ L L++++PE+ D P
Sbjct: 4 AEIIKKAEELRKKLRYHSYLYYVLDKPEITDFEFDRLYRSLVDLEKEYPEIVTPDSPTQR 63
Query: 117 VG 118
VG
Sbjct: 64 VG 65
>gi|167770441|ref|ZP_02442494.1| hypothetical protein ANACOL_01786 [Anaerotruncus colihominis DSM
17241]
gi|167667036|gb|EDS11166.1| hypothetical protein ANACOL_01786 [Anaerotruncus colihominis DSM
17241]
Length = 664
Score = 42.0 bits (97), Expect = 0.026, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 28/56 (50%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
V+ L + H YY LD P +D YDR+ L L+E FPEL + P VG
Sbjct: 14 VQELRTVIEKHNHSYYVLDRPTVSDYEYDRLLHELIDLEEAFPELASDHSPTRRVG 69
>gi|21673293|ref|NP_661358.1| DNA ligase, NAD-dependent [Chlorobium tepidum TLS]
gi|81791793|sp|Q8KF74|DNLJ_CHLTE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|21646383|gb|AAM71700.1| DNA ligase, NAD-dependent [Chlorobium tepidum TLS]
Length = 674
Score = 42.0 bits (97), Expect = 0.026, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
+DKAK + K A IE H + YY P +D +D++ +RL L+++F
Sbjct: 1 MDKAKAQQEIGKLRAEIE---------RHNRLYYLEAKPEISDFEFDKLLKRLIMLEKEF 51
Query: 105 PELFDEDHPWNTVG 118
PEL D P VG
Sbjct: 52 PELVTPDSPSQRVG 65
>gi|169335238|ref|ZP_02862431.1| hypothetical protein ANASTE_01646 [Anaerofustis stercorihominis DSM
17244]
gi|169257976|gb|EDS71942.1| hypothetical protein ANASTE_01646 [Anaerofustis stercorihominis DSM
17244]
Length = 659
Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E+E L + L H + YY DNP +D YD + +L L+E++P+ E P + VG
Sbjct: 7 EIEKLTEELLEHNRKYYEEDNPSISDYDYDMLIRKLTKLEEEYPQYKKEYSPTDRVG 63
>gi|91788454|ref|YP_549406.1| DNA ligase [Polaromonas sp. JS666]
gi|123164833|sp|Q12AD4|DNLJ_POLSJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|91697679|gb|ABE44508.1| DNA ligase, NAD-dependent [Polaromonas sp. JS666]
Length = 706
Score = 42.0 bits (97), Expect = 0.026, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 67 VKIALH-HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ LH H YY LD P D YDR+ + L L+ +PEL D P VG
Sbjct: 26 LRAELHAHAHRYYVLDEPTIPDSEYDRLFKELQDLEAAYPELLTPDSPTQRVG 78
>gi|74316642|ref|YP_314382.1| NAD-dependent DNA ligase [Thiobacillus denitrificans ATCC 25259]
gi|123745545|sp|Q3SL40|DNLJ_THIDA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|74056137|gb|AAZ96577.1| NAD-dependent DNA ligase [Thiobacillus denitrificans ATCC 25259]
Length = 686
Score = 42.0 bits (97), Expect = 0.027, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 23/46 (50%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY LD P D YDR+ L+AL+ PEL D P VG
Sbjct: 20 HNYAYYVLDAPTIPDAEYDRLYHELEALEAAHPELVAADSPTRRVG 65
>gi|134102614|ref|YP_001108275.1| NAD-dependent DNA ligase LigA [Saccharopolyspora erythraea NRRL
2338]
gi|291004701|ref|ZP_06562674.1| NAD-dependent DNA ligase LigA [Saccharopolyspora erythraea NRRL
2338]
gi|166216238|sp|A4FMS5|DNLJ_SACEN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|133915237|emb|CAM05350.1| DNA ligase, NAD-dependent [Saccharopolyspora erythraea NRRL 2338]
Length = 727
Score = 42.0 bits (97), Expect = 0.028, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 27/53 (50%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV+ HQ YY LD+P +DG +D + L L+ P L D D P VG
Sbjct: 50 LVEQVRAHQFRYYVLDSPTISDGEFDELFTELQTLESDHPALRDPDSPTQVVG 102
>gi|300717845|ref|YP_003742648.1| DNA ligase [Erwinia billingiae Eb661]
gi|299063681|emb|CAX60801.1| DNA ligase [Erwinia billingiae Eb661]
Length = 672
Score = 42.0 bits (97), Expect = 0.028, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D+P D YDR+ L L++ PEL D P VG
Sbjct: 17 HHEYQYHVMDDPEVPDAEYDRLMRELRELEQAHPELVTADSPTQRVG 63
>gi|120554094|ref|YP_958445.1| DNA ligase, NAD-dependent [Marinobacter aquaeolei VT8]
gi|166215819|sp|A1TZT9|DNLJ_MARAV RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|120323943|gb|ABM18258.1| DNA ligase, NAD-dependent [Marinobacter aquaeolei VT8]
Length = 678
Score = 42.0 bits (97), Expect = 0.028, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H +YY D+P D YDR+ L L+ + PEL ED P VG
Sbjct: 22 HNYYYYVQDDPRIPDAEYDRLFRELQKLEAEHPELATEDSPTRRVG 67
>gi|189499438|ref|YP_001958908.1| DNA ligase, NAD-dependent [Chlorobium phaeobacteroides BS1]
gi|254781285|sp|B3EM49|DNLJ_CHLPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|189494879|gb|ACE03427.1| DNA ligase, NAD-dependent [Chlorobium phaeobacteroides BS1]
Length = 684
Score = 42.0 bits (97), Expect = 0.028, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 34/65 (52%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K +A+ E+ L + H YY L P +D YD + E+L AL+ +FPEL D P
Sbjct: 1 MDKKQAVAEIIRLREEIDRHNYRYYVLARPEISDFQYDAMLEKLVALEGEFPELKTSDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SQRVG 65
>gi|308187689|ref|YP_003931820.1| DNA ligase [Pantoea vagans C9-1]
gi|308058199|gb|ADO10371.1| DNA ligase [Pantoea vagans C9-1]
Length = 672
Score = 42.0 bits (97), Expect = 0.029, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+E+ P+L D P VG
Sbjct: 17 HHEYLYHVMDAPEVPDAEYDRLMRELRQLEEEHPDLITPDSPTQRVG 63
>gi|301633469|gb|ADK87023.1| DNA ligase (NAD(+)) [Mycoplasma pneumoniae FH]
Length = 658
Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD+PL +D YD++ ++L AL++ PEL D P VG
Sbjct: 21 YYVLDDPLVSDFEYDQLYKQLQALEQAHPELIQPDSPTQRVG 62
>gi|13508096|ref|NP_110045.1| DNA ligase [Mycoplasma pneumoniae M129]
gi|2494169|sp|P78021|DNLJ_MYCPN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|1674170|gb|AAB96127.1| DNA ligase [Mycoplasma pneumoniae M129]
Length = 658
Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD+PL +D YD++ ++L AL++ PEL D P VG
Sbjct: 21 YYVLDDPLVSDFEYDQLYKQLQALEQAHPELIQPDSPTQRVG 62
>gi|304398312|ref|ZP_07380186.1| DNA ligase, NAD-dependent [Pantoea sp. aB]
gi|304354178|gb|EFM18551.1| DNA ligase, NAD-dependent [Pantoea sp. aB]
Length = 672
Score = 42.0 bits (97), Expect = 0.029, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+E+ P+L D P VG
Sbjct: 17 HHEYLYHVMDAPEVPDAEYDRLMRELRQLEEEHPDLITPDSPTQRVG 63
>gi|253999028|ref|YP_003051091.1| DNA ligase, NAD-dependent [Methylovorus sp. SIP3-4]
gi|253985707|gb|ACT50564.1| DNA ligase, NAD-dependent [Methylovorus sp. SIP3-4]
Length = 699
Score = 42.0 bits (97), Expect = 0.029, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 36 PNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSE 95
P++ AL D A + + E I + +I L++ + YY LD+P D YDR+
Sbjct: 6 PSQGAL---FDNAPATVTFATPEVQIR-QLREQINLYNYQ-YYVLDDPSVPDSEYDRLFR 60
Query: 96 RLDALQEQFPELFDEDHPWNTVG 118
L AL+ PEL D P VG
Sbjct: 61 ELQALEHAHPELLTPDSPTQRVG 83
>gi|183599716|ref|ZP_02961209.1| hypothetical protein PROSTU_03219 [Providencia stuartii ATCC 25827]
gi|188021975|gb|EDU60015.1| hypothetical protein PROSTU_03219 [Providencia stuartii ATCC 25827]
Length = 671
Score = 42.0 bits (97), Expect = 0.029, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ LD P D YD++ E L A++ + PE D P VG
Sbjct: 16 HHEYQYHVLDAPEIPDAEYDKLMEELKAIEAEHPEWITSDSPTQRVG 62
>gi|259907817|ref|YP_002648173.1| NAD-dependent DNA ligase LigA [Erwinia pyrifoliae Ep1/96]
gi|224963439|emb|CAX54927.1| DNA ligase [Erwinia pyrifoliae Ep1/96]
gi|283477688|emb|CAY73604.1| DNA ligase [Erwinia pyrifoliae DSM 12163]
Length = 678
Score = 42.0 bits (97), Expect = 0.030, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ +L + H++ Y+ LD P D YDR+ L L+ Q PEL D P VG
Sbjct: 7 KITHLRTLLRHYEYQYHVLDAPAVPDAEYDRLMGELRDLEAQHPELLTSDSPTQRVG 63
>gi|116669859|ref|YP_830792.1| DNA ligase, NAD-dependent [Arthrobacter sp. FB24]
gi|166215392|sp|A0JUH2|DNLJ_ARTS2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|116609968|gb|ABK02692.1| DNA ligase, NAD-dependent [Arthrobacter sp. FB24]
Length = 790
Score = 42.0 bits (97), Expect = 0.030, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E E LV+ H+ YY+ D P+ +D +D + RL+ ++ PEL D P VG
Sbjct: 54 EYENLVEEVRKHRFAYYQEDAPIISDAEFDELFRRLETIEAMHPELVANDSPTQEVG 110
>gi|326387612|ref|ZP_08209218.1| DNA ligase, NAD-dependent [Novosphingobium nitrogenifigens DSM
19370]
gi|326207658|gb|EGD58469.1| DNA ligase, NAD-dependent [Novosphingobium nitrogenifigens DSM
19370]
Length = 687
Score = 42.0 bits (97), Expect = 0.030, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 34/69 (49%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
+ ++++ +A E+ L + +H + Y+ LD P D YD + R ++ FP L
Sbjct: 3 IDAMTEADAANELMRLARQIAYHDRLYHTLDTPEIADAEYDALVRRNAEIEAAFPHLIRA 62
Query: 111 DHPWNTVGY 119
D P VG+
Sbjct: 63 DSPSRKVGH 71
>gi|91793866|ref|YP_563517.1| DNA ligase, NAD-dependent [Shewanella denitrificans OS217]
gi|123165936|sp|Q12L82|DNLJ_SHEDO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|91715868|gb|ABE55794.1| DNA ligase, NAD-dependent [Shewanella denitrificans OS217]
Length = 670
Score = 42.0 bits (97), Expect = 0.030, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ LV H YY D P TD YD++ ++L AL+ + PEL D P VG
Sbjct: 6 LQIANLVNELNQHNIKYYVDDAPSVTDAYYDKLMQQLLALEAEHPELIQSDSPSRRVG 63
>gi|196250518|ref|ZP_03149209.1| DNA ligase, NAD-dependent [Geobacillus sp. G11MC16]
gi|196210008|gb|EDY04776.1| DNA ligase, NAD-dependent [Geobacillus sp. G11MC16]
Length = 670
Score = 42.0 bits (97), Expect = 0.030, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ + L A+++Q+PEL D P +G
Sbjct: 24 YYVLDRPSVPDAEYDRLMQELIAIEKQYPELKTSDSPTQRIG 65
>gi|138893932|ref|YP_001124385.1| NAD-dependent DNA ligase LigA [Geobacillus thermodenitrificans
NG80-2]
gi|166215760|sp|A4IJY6|DNLJ_GEOTN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|134265445|gb|ABO65640.1| DNA ligase [Geobacillus thermodenitrificans NG80-2]
Length = 670
Score = 42.0 bits (97), Expect = 0.030, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ + L A+++Q+PEL D P +G
Sbjct: 24 YYVLDRPSVPDAEYDRLMQELIAIEKQYPELKTSDSPTQRIG 65
>gi|325982988|ref|YP_004295390.1| DNA ligase, NAD-dependent [Nitrosomonas sp. AL212]
gi|325532507|gb|ADZ27228.1| DNA ligase, NAD-dependent [Nitrosomonas sp. AL212]
Length = 677
Score = 42.0 bits (97), Expect = 0.031, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 68 KIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+I LH+ + YY LD P D YDR+ L +++ +P+L D P VG
Sbjct: 18 EIELHNYR-YYVLDTPTIPDAEYDRLLRELQHIEQDYPQLITADSPTQRVG 67
>gi|114565926|ref|YP_753080.1| DNA ligase (NAD(+)) [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
gi|122318951|sp|Q0AZZ5|DNLJ_SYNWW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|114336861|gb|ABI67709.1| DNA ligase (NAD(+)) [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
Length = 661
Score = 42.0 bits (97), Expect = 0.031, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY LD PL +D YDR+ + L L+E++P+ D P V
Sbjct: 17 HDYHYYILDAPLISDSGYDRLMQELKKLEEEYPQYITADSPTQRVA 62
>gi|317179023|dbj|BAJ56811.1| NAD-dependent DNA ligase LigA [Helicobacter pylori F30]
Length = 657
Score = 42.0 bits (97), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S+ E + +EYL ++ HH YY LD+P+ +D +YD + + L A +E+ P + P
Sbjct: 4 SQKEYLERIEYLNTLS-HH---YYNLDDPIVSDAIYDELYQELKAYEEKNPNSIQANSPT 59
Query: 115 NTVG 118
VG
Sbjct: 60 QKVG 63
>gi|212710592|ref|ZP_03318720.1| hypothetical protein PROVALCAL_01658 [Providencia alcalifaciens DSM
30120]
gi|212686673|gb|EEB46201.1| hypothetical protein PROVALCAL_01658 [Providencia alcalifaciens DSM
30120]
Length = 678
Score = 42.0 bits (97), Expect = 0.031, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YD++ + L AL+ + PEL D P VG
Sbjct: 23 HHEYLYHVMDAPEIPDVEYDKLMQELKALEAEHPELITTDSPTQRVG 69
>gi|319408814|emb|CBI82471.1| DNA ligase [Bartonella schoenbuchensis R1]
Length = 718
Score = 41.6 bits (96), Expect = 0.032, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
+DK V +L+ EA E+E+L K H Y D P +D YD + R ++ F
Sbjct: 1 MDK-NAVKNLTALEAASELEWLAKEIARHDVLYNNNDQPEISDAQYDALRRRNTEIEALF 59
Query: 105 PELFDEDHPWNTVG 118
PEL D P +G
Sbjct: 60 PELIRTDSPSYKIG 73
>gi|227530245|ref|ZP_03960294.1| DNA ligase (NAD(+)) [Lactobacillus vaginalis ATCC 49540]
gi|227349834|gb|EEJ40125.1| DNA ligase (NAD(+)) [Lactobacillus vaginalis ATCC 49540]
Length = 680
Score = 41.6 bits (96), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V L+ +A E+ L K K YY D+P D +YDR +RL ++++FPEL
Sbjct: 8 VAQLTLDQAKEEIGPLRKQIAQWGKEYYEQDSPTVEDYVYDRQYQRLVQIEQRFPELQTP 67
Query: 111 DHPWNTVG 118
D P VG
Sbjct: 68 DSPTQQVG 75
>gi|315502322|ref|YP_004081209.1| DNA ligase, nad-dependent [Micromonospora sp. L5]
gi|315408941|gb|ADU07058.1| DNA ligase, NAD-dependent [Micromonospora sp. L5]
Length = 717
Score = 41.6 bits (96), Expect = 0.032, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 25/46 (54%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HQ YY LD P TD +D+ L+AL+ ++P L D P VG
Sbjct: 46 HQYRYYVLDAPTVTDAEFDKQLRELEALEAEYPALRTPDSPTQRVG 91
>gi|241896133|ref|ZP_04783429.1| NAD-dependent DNA ligase [Weissella paramesenteroides ATCC 33313]
gi|241870647|gb|EER74398.1| NAD-dependent DNA ligase [Weissella paramesenteroides ATCC 33313]
Length = 675
Score = 41.6 bits (96), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 68 KIALHHQKW---YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
K+ L Q+W YY D+P D YD+V +RL L+ FPEL + D VG
Sbjct: 18 KLQLQLQQWAKEYYENDSPTVEDAEYDKVYKRLQELEAAFPELVNPDSITQQVG 71
>gi|262203140|ref|YP_003274348.1| DNA ligase, NAD-dependent [Gordonia bronchialis DSM 43247]
gi|262086487|gb|ACY22455.1| DNA ligase, NAD-dependent [Gordonia bronchialis DSM 43247]
Length = 691
Score = 41.6 bits (96), Expect = 0.033, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 26/46 (56%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HQ YY D+P+ TDG +D + RL L++ PEL D P VG
Sbjct: 28 HQFRYYVKDSPVITDGEFDALLRRLQDLEDAHPELAAPDSPTKLVG 73
>gi|223986795|ref|ZP_03636777.1| hypothetical protein HOLDEFILI_04100 [Holdemania filiformis DSM
12042]
gi|223961228|gb|EEF65758.1| hypothetical protein HOLDEFILI_04100 [Holdemania filiformis DSM
12042]
Length = 663
Score = 41.6 bits (96), Expect = 0.033, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
Y+ LD+P +D YD++ L L++Q PELFD + P VG
Sbjct: 20 YHVLDHPTVSDAEYDQLMRELITLEQQHPELFDPNSPTQRVG 61
>gi|154148661|ref|YP_001406577.1| NAD-dependent DNA ligase LigA [Campylobacter hominis ATCC BAA-381]
gi|166215571|sp|A7I236|DNLJ_CAMHC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|153804670|gb|ABS51677.1| DNA ligase, NAD-dependent [Campylobacter hominis ATCC BAA-381]
Length = 645
Score = 41.6 bits (96), Expect = 0.033, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 60 MIEVEYLVKIALHH--QKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
M E EYL + + + K YY DNPL TD YD + ++++ + +FP+L P N V
Sbjct: 1 MSEAEYLKAVEMLNIWAKAYYTQDNPLATDIEYDVLYKKVETFENEFPDLKVSYSPTNRV 60
Query: 118 G 118
G
Sbjct: 61 G 61
>gi|317181928|dbj|BAJ59712.1| NAD-dependent DNA ligase LigA [Helicobacter pylori F57]
Length = 656
Score = 41.6 bits (96), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S+ E + +EYL ++ HH YY LD+P+ +D +YD + + L A +E+ P + P
Sbjct: 4 SQKEYLERIEYLNTLS-HH---YYNLDDPIVSDAVYDELYQELKAYEEKNPNSIQSNSPT 59
Query: 115 NTVG 118
VG
Sbjct: 60 QKVG 63
>gi|302865766|ref|YP_003834403.1| DNA ligase, NAD-dependent [Micromonospora aurantiaca ATCC 27029]
gi|302568625|gb|ADL44827.1| DNA ligase, NAD-dependent [Micromonospora aurantiaca ATCC 27029]
Length = 717
Score = 41.6 bits (96), Expect = 0.033, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 25/46 (54%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HQ YY LD P TD +D+ L+AL+ ++P L D P VG
Sbjct: 46 HQYRYYVLDAPTVTDAEFDKQLRELEALEAEYPALRTPDSPTQRVG 91
>gi|126661836|ref|ZP_01732835.1| DNA ligase [Flavobacteria bacterium BAL38]
gi|126625215|gb|EAZ95904.1| DNA ligase [Flavobacteria bacterium BAL38]
Length = 663
Score = 41.6 bits (96), Expect = 0.033, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY LDNP+ +D +D+ ++L L+ Q P+ FDE+ P VG
Sbjct: 16 QHNYNYYVLDNPIISDFEFDQKLKQLQDLEIQNPDFFDENSPTQRVG 62
>gi|254489942|ref|ZP_05103137.1| DNA ligase, NAD-dependent [Methylophaga thiooxidans DMS010]
gi|224465027|gb|EEF81281.1| DNA ligase, NAD-dependent [Methylophaga thiooxydans DMS010]
Length = 673
Score = 41.6 bits (96), Expect = 0.034, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 23/47 (48%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H+ YY DNP D YDR+ L L++ PEL D P VG
Sbjct: 20 HYNYLYYVTDNPEVPDAEYDRLFSELQQLEQTHPELLTADSPTQRVG 66
>gi|220915846|ref|YP_002491150.1| DNA ligase, NAD-dependent [Anaeromyxobacter dehalogenans 2CP-1]
gi|254781252|sp|B8JD56|DNLJ_ANAD2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|219953700|gb|ACL64084.1| DNA ligase, NAD-dependent [Anaeromyxobacter dehalogenans 2CP-1]
Length = 687
Score = 41.6 bits (96), Expect = 0.034, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 22/41 (53%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
YY LD PL D YDR+ L AL+ + PEL D P V
Sbjct: 24 YYVLDQPLLADAEYDRLMHELQALEAEHPELVTADSPTQRV 64
>gi|284006788|emb|CBA72055.1| DNA ligase [Arsenophonus nasoniae]
Length = 670
Score = 41.6 bits (96), Expect = 0.035, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ LD P D YDR+ + L L+ + PE D P VG
Sbjct: 17 HHEYLYHVLDTPEIPDAEYDRLMQELKKLEAEHPEWITADSPTQRVG 63
>gi|126659779|ref|ZP_01730906.1| NAD-dependent DNA ligase LigA [Cyanothece sp. CCY0110]
gi|126618931|gb|EAZ89673.1| NAD-dependent DNA ligase LigA [Cyanothece sp. CCY0110]
Length = 677
Score = 41.6 bits (96), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD+P+ D +YD++ LD L+++ P+L D P VG
Sbjct: 26 YYVLDDPIMEDAVYDQLYRELDNLEKEHPQLITPDSPTQRVG 67
>gi|302542307|ref|ZP_07294649.1| DNA ligase, NAD-dependent [Streptomyces hygroscopicus ATCC 53653]
gi|302459925|gb|EFL23018.1| DNA ligase, NAD-dependent [Streptomyces himastatinicus ATCC 53653]
Length = 740
Score = 41.6 bits (96), Expect = 0.036, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 31/61 (50%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
EA E L + H+ YY D P+ +D +DR+ RL+AL+E PEL D P V
Sbjct: 12 EARDEHAKLAEQVEEHRFRYYVKDAPIVSDAEFDRLLRRLEALEEDHPELRTPDSPTQKV 71
Query: 118 G 118
Sbjct: 72 A 72
>gi|332673586|gb|AEE70403.1| NAD-dependent DNA ligase LigA [Helicobacter pylori 83]
Length = 656
Score = 41.6 bits (96), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S+ E + +EYL ++ HH YY LD+P+ +D +YD + + L A +E+ P + P
Sbjct: 4 SQKEYLERIEYLNTLS-HH---YYNLDDPIVSDAVYDELYQELKAYEEKNPNSIQANSPT 59
Query: 115 NTVG 118
VG
Sbjct: 60 QKVG 63
>gi|261822799|ref|YP_003260905.1| NAD-dependent DNA ligase LigA [Pectobacterium wasabiae WPP163]
gi|261606812|gb|ACX89298.1| DNA ligase, NAD-dependent [Pectobacterium wasabiae WPP163]
Length = 681
Score = 41.6 bits (96), Expect = 0.037, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 29/58 (50%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ V L ++ HH+ Y+ D P D YD++ + L AL+ PEL D P VG
Sbjct: 13 LRVAELRRVLRHHEYKYHVEDAPEIPDSEYDKLMQELKALEADHPELVTSDSPTQRVG 70
>gi|153872826|ref|ZP_02001606.1| NAD-dependent DNA ligase [Beggiatoa sp. PS]
gi|152070708|gb|EDN68394.1| NAD-dependent DNA ligase [Beggiatoa sp. PS]
Length = 670
Score = 41.6 bits (96), Expect = 0.038, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 23/43 (53%)
Query: 76 WYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+YY LD P D YD++ L AL+E +P L D P VG
Sbjct: 24 YYYVLDEPRIPDSEYDKLMRELHALEENYPALITADSPTQRVG 66
>gi|320160951|ref|YP_004174175.1| DNA ligase [Anaerolinea thermophila UNI-1]
gi|319994804|dbj|BAJ63575.1| DNA ligase [Anaerolinea thermophila UNI-1]
Length = 674
Score = 41.6 bits (96), Expect = 0.038, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 29/57 (50%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E E L K +H YY LD+P+ +D YDR+ RL ++ PE D P VG
Sbjct: 9 EYENLKKQIHYHDYRYYVLDDPVISDAEYDRLILRLKQIEFAHPEWITPDSPSQRVG 65
>gi|315586702|gb|ADU41083.1| NAD-dependent DNA ligase LigA [Helicobacter pylori 35A]
Length = 656
Score = 41.6 bits (96), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S+ E + +EYL ++ HH YY LD+P+ +D +YD + + L A +E+ P + P
Sbjct: 4 SQKEYLERIEYLNTLS-HH---YYNLDDPIVSDAVYDELYQELKAYEEKNPNSIQANSPT 59
Query: 115 NTVG 118
VG
Sbjct: 60 QKVG 63
>gi|261839558|gb|ACX99323.1| NAD-dependent DNA ligase LigA [Helicobacter pylori 52]
Length = 657
Score = 41.6 bits (96), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S+ E + +EYL ++ HH YY LD+P+ +D +YD + + L A +E+ P + P
Sbjct: 4 SQKEYLERIEYLNTLS-HH---YYNLDDPIVSDAVYDELYQELKAYEEKNPNSIQANSPT 59
Query: 115 NTVG 118
VG
Sbjct: 60 QKVG 63
>gi|255281707|ref|ZP_05346262.1| DNA ligase, NAD-dependent [Bryantella formatexigens DSM 14469]
gi|255267774|gb|EET60979.1| DNA ligase, NAD-dependent [Bryantella formatexigens DSM 14469]
Length = 674
Score = 41.6 bits (96), Expect = 0.038, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 31/57 (54%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++E L K +H YY DNP +D YD++ L +L+++ PEL + P VG
Sbjct: 11 KIEELRKTLEYHSDRYYNQDNPEISDYEYDQMMLELKSLEKEHPELITPESPTQHVG 67
>gi|325576592|ref|ZP_08147310.1| NAD-dependent DNA ligase LigA [Haemophilus parainfluenzae ATCC
33392]
gi|325161155|gb|EGC73270.1| NAD-dependent DNA ligase LigA [Haemophilus parainfluenzae ATCC
33392]
Length = 675
Score = 41.6 bits (96), Expect = 0.039, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
Y+ LDNP D YDR+ +L AL+ PEL D P VG
Sbjct: 29 YHVLDNPTIPDAEYDRLFHQLKALEAAHPELITADSPTQRVG 70
>gi|301155433|emb|CBW14899.1| DNA ligase, NAD(+)-dependent [Haemophilus parainfluenzae T3T1]
Length = 667
Score = 41.6 bits (96), Expect = 0.039, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
Y+ LDNP D YDR+ +L AL+ PEL D P VG
Sbjct: 21 YHVLDNPTIPDAEYDRLFHQLKALEAAHPELITADSPTQRVG 62
>gi|291557760|emb|CBL34877.1| DNA ligase, NAD-dependent [Eubacterium siraeum V10Sc8a]
Length = 660
Score = 41.6 bits (96), Expect = 0.039, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K + E E L + H YY LD+P D YDR+ R+ ++ + PE+ E P
Sbjct: 1 MDKEQIKSEYEQLCREVEQHNFNYYVLDDPTIEDDEYDRLMRRIKEIEAENPEIVSESSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQHVG 65
>gi|149374973|ref|ZP_01892746.1| DNA ligase, NAD-dependent [Marinobacter algicola DG893]
gi|149360862|gb|EDM49313.1| DNA ligase, NAD-dependent [Marinobacter algicola DG893]
Length = 676
Score = 41.6 bits (96), Expect = 0.039, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 26/53 (49%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L I H YY LD+P D YDR+ L L+ Q+P++ D P VG
Sbjct: 15 LRDIITEHNYQYYVLDDPRVPDAEYDRLFRELQDLETQYPDIVTPDTPTRRVG 67
>gi|317177554|dbj|BAJ55343.1| NAD-dependent DNA ligase LigA [Helicobacter pylori F16]
Length = 656
Score = 41.6 bits (96), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S+ E + +EYL ++ HH YY LD+P+ +D +YD + + L A +E+ P + P
Sbjct: 4 SQKEYLERIEYLNTLS-HH---YYNLDDPIVSDAVYDELYQELKAYEEKNPNSIQANSPT 59
Query: 115 NTVG 118
VG
Sbjct: 60 QKVG 63
>gi|257095174|ref|YP_003168815.1| NAD-dependent DNA ligase [Candidatus Accumulibacter phosphatis
clade IIA str. UW-1]
gi|257047698|gb|ACV36886.1| DNA ligase, NAD-dependent [Candidatus Accumulibacter phosphatis
clade IIA str. UW-1]
Length = 675
Score = 41.6 bits (96), Expect = 0.039, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 22/42 (52%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ L AL+ + PEL D P VG
Sbjct: 21 YYVLDAPSIADADYDRLFRELQALEAEHPELVSRDSPTQRVG 62
>gi|78223924|ref|YP_385671.1| NAD-dependent DNA ligase C4-type [Geobacter metallireducens GS-15]
gi|123756373|sp|Q39S28|DNLJ_GEOMG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|78195179|gb|ABB32946.1| NAD-dependent DNA ligase C4-type [Geobacter metallireducens GS-15]
Length = 671
Score = 41.6 bits (96), Expect = 0.039, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 23/46 (50%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY LD P TD YD + L L+E+ PEL D P VG
Sbjct: 20 HDHLYYVLDRPELTDAEYDALYRELLKLEEEHPELVTPDSPSRRVG 65
>gi|297379814|gb|ADI34701.1| DNA ligase, NAD-dependent [Helicobacter pylori v225d]
Length = 656
Score = 41.6 bits (96), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S+ E + +EYL ++ HH YY LD+P+ +D +YD + + L A +E+ P + P
Sbjct: 4 SQKEYLERIEYLNTLS-HH---YYNLDDPIVSDAVYDELYQELKAYEEKNPNSIQANSPT 59
Query: 115 NTVG 118
VG
Sbjct: 60 QKVG 63
>gi|145633173|ref|ZP_01788905.1| DNA ligase [Haemophilus influenzae 3655]
gi|144986399|gb|EDJ92978.1| DNA ligase [Haemophilus influenzae 3655]
Length = 670
Score = 41.6 bits (96), Expect = 0.040, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L K ++ Y+ LDNP D YDR+ +L AL+ + PE D P VG
Sbjct: 7 QLDNLRKTLRQYEYEYHVLDNPTVPDSEYDRLFHQLKALELEHPEFLTSDSPTQRVG 63
>gi|295697355|ref|YP_003590593.1| DNA ligase, NAD-dependent [Bacillus tusciae DSM 2912]
gi|295412957|gb|ADG07449.1| DNA ligase, NAD-dependent [Bacillus tusciae DSM 2912]
Length = 677
Score = 41.6 bits (96), Expect = 0.040, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 30/62 (48%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
+G+A +E L + + YY LD+PL D YDR L L+ + PEL D P
Sbjct: 4 QGDAARRIEELRALIRRYDYHYYVLDDPLVDDAEYDRCMRELVELEARHPELVTPDSPTQ 63
Query: 116 TV 117
V
Sbjct: 64 RV 65
>gi|293376177|ref|ZP_06622422.1| DNA ligase (NAD(+)) [Turicibacter sanguinis PC909]
gi|292645164|gb|EFF63229.1| DNA ligase (NAD(+)) [Turicibacter sanguinis PC909]
Length = 669
Score = 41.2 bits (95), Expect = 0.042, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ +E L K+ + YY LD P +D YDR+ + L L+E+ PEL P VG
Sbjct: 11 LRIEELTKLLTQYNHEYYVLDKPSVSDREYDRLMQELMELEEKHPELKSNTSPTVRVG 68
>gi|159028322|emb|CAO87220.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 669
Score = 41.2 bits (95), Expect = 0.042, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 27/42 (64%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD+P +D +YD++ L+ +++++P+L D P VG
Sbjct: 25 YYVLDDPFISDSVYDQLYRELEDIEKRYPQLITPDSPTQRVG 66
>gi|322418721|ref|YP_004197944.1| NAD-dependent DNA ligase [Geobacter sp. M18]
gi|320125108|gb|ADW12668.1| DNA ligase, NAD-dependent [Geobacter sp. M18]
Length = 668
Score = 41.2 bits (95), Expect = 0.042, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 28/56 (50%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ +L K H + YY D P TD YD + L L+++FPEL D P VG
Sbjct: 10 IAWLSKEIERHNRLYYEQDMPEITDAEYDALFRELQELEKKFPELALPDSPTGRVG 65
>gi|73541575|ref|YP_296095.1| NAD-dependent DNA ligase [Ralstonia eutropha JMP134]
gi|123732913|sp|Q470D2|DNLJ_RALEJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|72118988|gb|AAZ61251.1| NAD-dependent DNA ligase [Ralstonia eutropha JMP134]
Length = 711
Score = 41.2 bits (95), Expect = 0.042, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 30/73 (41%)
Query: 46 DKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFP 105
D + L A V++L H YY LD P D YD + L AL+ + P
Sbjct: 11 DASAPAGGLPPATAAERVQWLRDELDRHNYQYYVLDAPTIPDAEYDALFTELQALEAEHP 70
Query: 106 ELFDEDHPWNTVG 118
EL D P VG
Sbjct: 71 ELLTPDSPTQRVG 83
>gi|325838923|ref|ZP_08166729.1| DNA ligase (NAD+) [Turicibacter sp. HGF1]
gi|325490664|gb|EGC92975.1| DNA ligase (NAD+) [Turicibacter sp. HGF1]
Length = 662
Score = 41.2 bits (95), Expect = 0.042, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ +E L K+ + YY LD P +D YDR+ + L L+E+ PEL P VG
Sbjct: 4 LRIEELTKLLTQYNHEYYVLDKPSVSDREYDRLMQELMELEEKHPELKSNTSPTVRVG 61
>gi|227114832|ref|ZP_03828488.1| NAD-dependent DNA ligase LigA [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 684
Score = 41.2 bits (95), Expect = 0.042, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 30/60 (50%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
A + V L ++ HH+ Y+ D P D YD++ + L AL+ PEL D P VG
Sbjct: 14 AALRVAELRRVLRHHEYKYHVEDAPEIPDIEYDKLMQELKALEADHPELVTSDSPTQRVG 73
>gi|238855396|ref|ZP_04645707.1| DNA ligase, NAD-dependent [Lactobacillus jensenii 269-3]
gi|260665363|ref|ZP_05866211.1| DNA ligase, NAD-dependent [Lactobacillus jensenii SJ-7A-US]
gi|282932093|ref|ZP_06337550.1| DNA ligase (NAD(+)) [Lactobacillus jensenii 208-1]
gi|238831994|gb|EEQ24320.1| DNA ligase, NAD-dependent [Lactobacillus jensenii 269-3]
gi|260560867|gb|EEX26843.1| DNA ligase, NAD-dependent [Lactobacillus jensenii SJ-7A-US]
gi|281303772|gb|EFA95917.1| DNA ligase (NAD(+)) [Lactobacillus jensenii 208-1]
Length = 669
Score = 41.2 bits (95), Expect = 0.042, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 34/68 (50%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
+ L+K A E+E L K + YY D P D +YD+ +RL L++QFPEL
Sbjct: 1 MAKLNKKAAQEEIENLRKKLNTWAEQYYAQDAPSVEDAVYDQNYQRLVELEKQFPELVTS 60
Query: 111 DHPWNTVG 118
D VG
Sbjct: 61 DSITQRVG 68
>gi|87301433|ref|ZP_01084273.1| DNA ligase [Synechococcus sp. WH 5701]
gi|87283650|gb|EAQ75604.1| DNA ligase [Synechococcus sp. WH 5701]
Length = 698
Score = 41.2 bits (95), Expect = 0.042, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E+ L+ A H YY LD+P D +YDR+ L+ L+ PEL D P VG
Sbjct: 7 ELRRLLNRAAHA---YYVLDSPEMEDAVYDRLYRELEQLERLHPELISPDSPTRRVG 60
>gi|319787332|ref|YP_004146807.1| DNA ligase, NAD-dependent [Pseudoxanthomonas suwonensis 11-1]
gi|317465844|gb|ADV27576.1| DNA ligase, NAD-dependent [Pseudoxanthomonas suwonensis 11-1]
Length = 788
Score = 41.2 bits (95), Expect = 0.043, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 24/42 (57%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
Y+ LD P TD YD + L+AL+ + PEL ED P VG
Sbjct: 25 YHELDAPDITDAQYDALVRELEALEREHPELAAEDSPTRRVG 66
>gi|311278661|ref|YP_003940892.1| DNA ligase, NAD-dependent [Enterobacter cloacae SCF1]
gi|308747856|gb|ADO47608.1| DNA ligase, NAD-dependent [Enterobacter cloacae SCF1]
Length = 671
Score = 41.2 bits (95), Expect = 0.043, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ + PEL D P VG
Sbjct: 17 HHEYLYHVMDAPELPDAEYDRLMRELRELEAKHPELITPDSPTQRVG 63
>gi|15807063|ref|NP_295792.1| DNA ligase [Deinococcus radiodurans R1]
gi|81550876|sp|Q9RSQ5|DNLJ_DEIRA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|6459863|gb|AAF11619.1|AE002043_4 DNA ligase [Deinococcus radiodurans R1]
Length = 700
Score = 41.2 bits (95), Expect = 0.043, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 68 KIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ALH++ YY D P D YDR++ L L+ PE D+ P TVG
Sbjct: 24 EVALHNRA-YYEQDAPTIPDDEYDRLARELRELEAAHPEFADDHSPVQTVG 73
>gi|237732406|ref|ZP_04562887.1| NAD-dependent DNA ligase LigA [Citrobacter sp. 30_2]
gi|226907945|gb|EEH93863.1| NAD-dependent DNA ligase LigA [Citrobacter sp. 30_2]
Length = 671
Score = 41.2 bits (95), Expect = 0.044, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ Q PEL D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMCELRELEAQHPELITPDSPTQRVG 63
>gi|217033559|ref|ZP_03438988.1| hypothetical protein HP9810_905g78 [Helicobacter pylori 98-10]
gi|216944084|gb|EEC23515.1| hypothetical protein HP9810_905g78 [Helicobacter pylori 98-10]
Length = 656
Score = 41.2 bits (95), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S+ E + +EYL ++ HH YY LD+P+ +D +YD + + L A +E+ P + P
Sbjct: 4 SQKEYLERIEYLNTLS-HH---YYNLDDPIVSDAVYDELYQELKAYEEKNPNGIQANSPT 59
Query: 115 NTVG 118
VG
Sbjct: 60 QKVG 63
>gi|164686703|ref|ZP_02210731.1| hypothetical protein CLOBAR_00298 [Clostridium bartlettii DSM
16795]
gi|164604093|gb|EDQ97558.1| hypothetical protein CLOBAR_00298 [Clostridium bartlettii DSM
16795]
Length = 674
Score = 41.2 bits (95), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+E L+ + +H + YY D+P D YD + + L L+E+ PEL D P N VG
Sbjct: 7 IEELINLINYHNEKYYNQDSPEIEDFEYDNLMKELIKLEEENPELKRNDSPSNRVG 62
>gi|114776845|ref|ZP_01451888.1| DNA ligase, NAD-dependent [Mariprofundus ferrooxydans PV-1]
gi|114552931|gb|EAU55362.1| DNA ligase, NAD-dependent [Mariprofundus ferrooxydans PV-1]
Length = 670
Score = 41.2 bits (95), Expect = 0.044, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 30/63 (47%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
K +E+L H YY LD P+ +D YDR+ L++L+ + E D P
Sbjct: 4 KATLTARIEHLRSQLREHNYRYYILDAPVISDAEYDRLLRELESLEAELGEPVPADSPTR 63
Query: 116 TVG 118
TVG
Sbjct: 64 TVG 66
>gi|113475951|ref|YP_722012.1| NAD-dependent DNA ligase LigA [Trichodesmium erythraeum IMS101]
gi|123160812|sp|Q112N5|DNLJ_TRIEI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|110166999|gb|ABG51539.1| DNA ligase, NAD-dependent [Trichodesmium erythraeum IMS101]
Length = 774
Score = 41.2 bits (95), Expect = 0.044, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P+ D +YD + L L+ Q+P+L D P VG
Sbjct: 26 YYVLDQPIMEDAVYDHLLRELQELESQYPQLIVSDSPTQRVG 67
>gi|239906999|ref|YP_002953740.1| NAD-dependent DNA ligase [Desulfovibrio magneticus RS-1]
gi|239796865|dbj|BAH75854.1| NAD-dependent DNA ligase [Desulfovibrio magneticus RS-1]
Length = 704
Score = 41.2 bits (95), Expect = 0.044, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD+P D YD + L AL+E PEL D + P VG
Sbjct: 27 YYVLDDPTVEDAAYDALYRELKALEEAHPELADPNSPTRRVG 68
>gi|23098215|ref|NP_691681.1| NAD-dependent DNA ligase LigA [Oceanobacillus iheyensis HTE831]
gi|81741485|sp|Q8CXK6|DNLJ_OCEIH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|22776440|dbj|BAC12716.1| DNA ligase (polydeoxyribonucleotide synthase[NAD+]) [Oceanobacillus
iheyensis HTE831]
Length = 667
Score = 41.2 bits (95), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++K + ++E L+++ + YY LDNP D YD+ L L++ FP+L E+ P
Sbjct: 1 MNKEQVSKKIESLIELLNQYGYEYYVLDNPTVPDAEYDQKLRELQQLEQDFPDLVMENSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|315127017|ref|YP_004069020.1| NAD-dependent DNA ligase [Pseudoalteromonas sp. SM9913]
gi|315015531|gb|ADT68869.1| NAD-dependent DNA ligase [Pseudoalteromonas sp. SM9913]
Length = 673
Score = 41.2 bits (95), Expect = 0.045, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 25/57 (43%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ +L H YY LD P D YDR+ L L+ Q PE D P VG
Sbjct: 8 QINHLRTTLEQHNYSYYVLDTPSIPDAEYDRLLRTLSELETQHPEFLTADSPTQKVG 64
>gi|226226196|ref|YP_002760302.1| NAD(+)-dependent DNA ligase [Gemmatimonas aurantiaca T-27]
gi|254781336|sp|C1A6H2|DNLJ_GEMAT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|226089387|dbj|BAH37832.1| NAD(+)-dependent DNA ligase [Gemmatimonas aurantiaca T-27]
Length = 689
Score = 41.2 bits (95), Expect = 0.045, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 24/45 (53%)
Query: 74 QKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
Q YY LD P +D YDR+ L ++ ++P L ED P VG
Sbjct: 27 QHEYYVLDRPTLSDQEYDRLFRELQGIEAEYPTLCTEDSPTRRVG 71
>gi|158334366|ref|YP_001515538.1| NAD-dependent DNA ligase LigA [Acaryochloris marina MBIC11017]
gi|190359221|sp|B0C308|DNLJ_ACAM1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|158304607|gb|ABW26224.1| DNA ligase, NAD-dependent [Acaryochloris marina MBIC11017]
Length = 675
Score = 41.2 bits (95), Expect = 0.046, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD PL D +YD++ L L+ Q+P+L D P VG
Sbjct: 26 YYGLDAPLMEDAVYDQLYHELVDLEAQYPQLITPDSPTQRVG 67
>gi|319951546|ref|ZP_08025350.1| NAD-dependent DNA ligase LigA [Dietzia cinnamea P4]
gi|319434794|gb|EFV90110.1| NAD-dependent DNA ligase LigA [Dietzia cinnamea P4]
Length = 726
Score = 41.2 bits (95), Expect = 0.046, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L + HQ YY D P+ +D +DR+ L AL+E++P L D P VG
Sbjct: 27 LAETVRDHQFRYYVKDAPIVSDAEFDRLFGELQALEEKYPALRTADSPTQLVG 79
>gi|194307280|gb|ACF42137.1| DNA ligase [Mycobacterium lepromatosis]
Length = 686
Score = 41.2 bits (95), Expect = 0.046, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 25/46 (54%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HQ YY D P+ +D +D + RL L+EQ PEL D P +G
Sbjct: 19 HQFRYYVRDAPIISDAEFDALLGRLTVLEEQHPELRTPDSPTQLIG 64
>gi|157144662|ref|YP_001451981.1| NAD-dependent DNA ligase LigA [Citrobacter koseri ATCC BAA-895]
gi|166215574|sp|A8ADI2|DNLJ_CITK8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|157081867|gb|ABV11545.1| hypothetical protein CKO_00382 [Citrobacter koseri ATCC BAA-895]
Length = 671
Score = 41.2 bits (95), Expect = 0.046, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ Q P+L D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRELEAQHPDLITPDSPSQRVG 63
>gi|313890529|ref|ZP_07824157.1| DNA ligase (NAD+) [Streptococcus pseudoporcinus SPIN 20026]
gi|313121046|gb|EFR44157.1| DNA ligase (NAD+) [Streptococcus pseudoporcinus SPIN 20026]
Length = 652
Score = 41.2 bits (95), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ YY DNP +D YD++ L AL+ ++PEL +D P VG
Sbjct: 14 QYRQEYYTNDNPTVSDQEYDKLYHELLALETEYPELIQKDSPTQGVG 60
>gi|121602535|ref|YP_989218.1| NAD-dependent DNA ligase LigA [Bartonella bacilliformis KC583]
gi|166215397|sp|A1UTB5|DNLJ_BARBK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|120614712|gb|ABM45313.1| DNA ligase, NAD-dependent [Bartonella bacilliformis KC583]
Length = 717
Score = 41.2 bits (95), Expect = 0.047, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 45 LDK-AKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQ 103
+DK AK +T+L EA E+E+L K H Y D P +D YD + R ++
Sbjct: 1 MDKDAKNLTAL---EAERELEWLAKEIARHDVLYNNHDQPEISDARYDALRRRNIEIETL 57
Query: 104 FPELFDEDHPWNTVG 118
FPEL D P VG
Sbjct: 58 FPELVRADSPSYKVG 72
>gi|288919113|ref|ZP_06413452.1| DNA ligase, NAD-dependent [Frankia sp. EUN1f]
gi|288349457|gb|EFC83695.1| DNA ligase, NAD-dependent [Frankia sp. EUN1f]
Length = 715
Score = 41.2 bits (95), Expect = 0.047, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 23/46 (50%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY LD P D YD + LD +++Q+PEL D P V
Sbjct: 52 HAHRYYVLDAPTIADAEYDALLRELDQIEQQYPELRTADSPTQKVA 97
>gi|94971682|ref|YP_593730.1| DNA ligase, NAD-dependent [Candidatus Koribacter versatilis
Ellin345]
gi|122986011|sp|Q1IHJ4|DNLJ_ACIBL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|94553732|gb|ABF43656.1| DNA ligase, NAD-dependent [Candidatus Koribacter versatilis
Ellin345]
Length = 673
Score = 41.2 bits (95), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+H+ YY LD+P +D YD + L AL+ + PEL D P VG
Sbjct: 20 YHEHRYYVLDDPEISDADYDVMMNELKALEAKHPELLTPDSPTQRVG 66
>gi|170016835|ref|YP_001727754.1| DNA ligase, NAD-dependent [Leuconostoc citreum KM20]
gi|254781358|sp|B1MXQ8|DNLJ_LEUCK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|169803692|gb|ACA82310.1| DNA ligase, NAD-dependent [Leuconostoc citreum KM20]
Length = 681
Score = 41.2 bits (95), Expect = 0.048, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 31/68 (45%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V +L+ A E+ L K + YY D PL D +YD RL L+ QFP+
Sbjct: 8 VNNLTTQMAQQEIATLQKRLTDYGVAYYEEDAPLVEDYIYDAFYARLVLLEAQFPQFVTP 67
Query: 111 DHPWNTVG 118
D P VG
Sbjct: 68 DSPTQNVG 75
>gi|317010835|gb|ADU84582.1| NAD-dependent DNA ligase LigA [Helicobacter pylori SouthAfrica7]
Length = 657
Score = 41.2 bits (95), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S+ E + +EYL ++ HH YY LD P+ +D +YD + + L A +E+ P + P
Sbjct: 4 SQKEYLERIEYLNTLS-HH---YYNLDEPIVSDAVYDELYQELKAYEEENPSYIQANSPT 59
Query: 115 NTVG 118
VG
Sbjct: 60 QKVG 63
>gi|288572809|ref|ZP_06391166.1| DNA ligase, NAD-dependent [Dethiosulfovibrio peptidovorans DSM
11002]
gi|288568550|gb|EFC90107.1| DNA ligase, NAD-dependent [Dethiosulfovibrio peptidovorans DSM
11002]
Length = 674
Score = 41.2 bits (95), Expect = 0.049, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 27/55 (49%)
Query: 64 EYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E L K H + YY LD+P D YDR+ L L+ + P L +D P VG
Sbjct: 11 ESLKKEIARHDRLYYVLDSPEIDDSSYDRMMRELLELEREHPTLVSDDSPSRRVG 65
>gi|86742328|ref|YP_482728.1| DNA ligase, NAD-dependent [Frankia sp. CcI3]
gi|123750794|sp|Q2J6U3|DNLJ_FRASC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|86569190|gb|ABD12999.1| DNA ligase, NAD-dependent [Frankia sp. CcI3]
Length = 706
Score = 41.2 bits (95), Expect = 0.049, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 25/46 (54%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY LD+P +D YDR+ L AL+E+ P+L D P V
Sbjct: 36 HAYRYYVLDSPTISDAEYDRLMAELAALEERHPDLRTPDSPTQKVA 81
>gi|238897965|ref|YP_002923645.1| DNA ligase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
gi|257096312|sp|C4K4K4|DNLJ_HAMD5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|229465723|gb|ACQ67497.1| DNA ligase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
Length = 702
Score = 41.2 bits (95), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 58 EAMIE-VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++M+E + L + HH+ Y+ D P TD YD + E+L + Q+PEL + D P
Sbjct: 2 KSMLEKINQLRDVLKHHEYLYHVNDAPEITDAEYDALLEKLREWESQYPELMNPDSPTQK 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|169350953|ref|ZP_02867891.1| hypothetical protein CLOSPI_01730 [Clostridium spiroforme DSM 1552]
gi|169292015|gb|EDS74148.1| hypothetical protein CLOSPI_01730 [Clostridium spiroforme DSM 1552]
Length = 682
Score = 41.2 bits (95), Expect = 0.049, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 71 LHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++H YY D+P +D YD + + L AL+++ PE ED P VG
Sbjct: 33 MYHNDRYYNQDDPEISDYEYDMMMQELKALEKKHPEYITEDSPTQKVG 80
>gi|150397271|ref|YP_001327738.1| NAD-dependent DNA ligase LigA [Sinorhizobium medicae WSM419]
gi|166216245|sp|A6UB73|DNLJ_SINMW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|150028786|gb|ABR60903.1| DNA ligase, NAD-dependent [Sinorhizobium medicae WSM419]
Length = 717
Score = 41.2 bits (95), Expect = 0.050, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H Y+ D+P +D YD + R D ++E+FP L ED P VG
Sbjct: 30 HDMLYHGKDDPEISDADYDALKRRNDLIEERFPALIREDSPSQKVG 75
>gi|313679715|ref|YP_004057454.1| DNA ligase, nad-dependent [Oceanithermus profundus DSM 14977]
gi|313152430|gb|ADR36281.1| DNA ligase, NAD-dependent [Oceanithermus profundus DSM 14977]
Length = 670
Score = 41.2 bits (95), Expect = 0.051, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 29/65 (44%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+++ EA V L H YY LD P +D YD + L L+ FPEL P
Sbjct: 1 MTREEAARRVAELTWAIRRHNHLYYVLDRPEISDAEYDALVRELAELEAAFPELRSPASP 60
Query: 114 WNTVG 118
N VG
Sbjct: 61 TNQVG 65
>gi|333016518|gb|EGK35849.1| DNA ligase, NAD-dependent [Shigella flexneri K-304]
Length = 671
Score = 41.2 bits (95), Expect = 0.051, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ + PEL D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVG 63
>gi|333001543|gb|EGK21111.1| DNA ligase, NAD-dependent [Shigella flexneri VA-6]
gi|333002206|gb|EGK21770.1| DNA ligase, NAD-dependent [Shigella flexneri K-272]
gi|333016032|gb|EGK35364.1| DNA ligase, NAD-dependent [Shigella flexneri K-227]
Length = 671
Score = 41.2 bits (95), Expect = 0.051, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ + PEL D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVG 63
>gi|332089820|gb|EGI94921.1| DNA ligase, NAD-dependent [Shigella dysenteriae 155-74]
Length = 671
Score = 41.2 bits (95), Expect = 0.051, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ + PEL D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVG 63
>gi|332088205|gb|EGI93327.1| DNA ligase, NAD-dependent [Shigella boydii 5216-82]
Length = 671
Score = 41.2 bits (95), Expect = 0.051, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ + PEL D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVG 63
>gi|325496534|gb|EGC94393.1| NAD-dependent DNA ligase LigA [Escherichia fergusonii ECD227]
Length = 671
Score = 41.2 bits (95), Expect = 0.051, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ + PEL D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVG 63
>gi|324112923|gb|EGC06899.1| DNA ligase [Escherichia fergusonii B253]
Length = 671
Score = 41.2 bits (95), Expect = 0.051, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ + PEL D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVG 63
>gi|324009590|gb|EGB78809.1| DNA ligase, NAD-dependent [Escherichia coli MS 57-2]
Length = 671
Score = 41.2 bits (95), Expect = 0.051, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ + PEL D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVG 63
>gi|323967844|gb|EGB63256.1| DNA ligase [Escherichia coli M863]
gi|327252066|gb|EGE63738.1| DNA ligase, NAD-dependent [Escherichia coli STEC_7v]
Length = 671
Score = 41.2 bits (95), Expect = 0.051, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ + PEL D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRELEAKHPELITPDSPTQRVG 63
>gi|323188282|gb|EFZ73575.1| DNA ligase, NAD-dependent [Escherichia coli RN587/1]
Length = 671
Score = 41.2 bits (95), Expect = 0.051, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ + PEL D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVG 63
>gi|331673883|ref|ZP_08374646.1| DNA ligase, NAD-dependent [Escherichia coli TA280]
gi|331069156|gb|EGI40548.1| DNA ligase, NAD-dependent [Escherichia coli TA280]
Length = 671
Score = 41.2 bits (95), Expect = 0.051, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ + PEL D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVG 63
>gi|331653837|ref|ZP_08354838.1| DNA ligase, NAD-dependent [Escherichia coli M718]
gi|331048686|gb|EGI20762.1| DNA ligase, NAD-dependent [Escherichia coli M718]
Length = 671
Score = 41.2 bits (95), Expect = 0.051, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ + PEL D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVG 63
>gi|300940348|ref|ZP_07154941.1| DNA ligase, NAD-dependent [Escherichia coli MS 21-1]
gi|300454839|gb|EFK18332.1| DNA ligase, NAD-dependent [Escherichia coli MS 21-1]
Length = 671
Score = 41.2 bits (95), Expect = 0.051, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ + PEL D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVG 63
>gi|301022290|ref|ZP_07186186.1| DNA ligase, NAD-dependent [Escherichia coli MS 69-1]
gi|300397609|gb|EFJ81147.1| DNA ligase, NAD-dependent [Escherichia coli MS 69-1]
Length = 671
Score = 41.2 bits (95), Expect = 0.051, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ + PEL D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVG 63
>gi|293410811|ref|ZP_06654387.1| DNA ligase [Escherichia coli B354]
gi|291471279|gb|EFF13763.1| DNA ligase [Escherichia coli B354]
Length = 671
Score = 41.2 bits (95), Expect = 0.051, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ + PEL D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVG 63
>gi|293415682|ref|ZP_06658325.1| DNA ligase [Escherichia coli B185]
gi|291433330|gb|EFF06309.1| DNA ligase [Escherichia coli B185]
Length = 671
Score = 41.2 bits (95), Expect = 0.051, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ + PEL D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVG 63
>gi|281179485|dbj|BAI55815.1| DNA ligase [Escherichia coli SE15]
Length = 671
Score = 41.2 bits (95), Expect = 0.051, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ + PEL D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVG 63
>gi|218690549|ref|YP_002398761.1| NAD-dependent DNA ligase LigA [Escherichia coli ED1a]
gi|254781322|sp|B7MY64|DNLJ_ECO81 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|218428113|emb|CAR09030.2| DNA ligase, NAD(+)-dependent [Escherichia coli ED1a]
Length = 671
Score = 41.2 bits (95), Expect = 0.051, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ + PEL D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVG 63
>gi|218700877|ref|YP_002408506.1| NAD-dependent DNA ligase LigA [Escherichia coli IAI39]
gi|254781321|sp|B7NPU7|DNLJ_ECO7I RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|218370863|emb|CAR18680.1| DNA ligase, NAD(+)-dependent [Escherichia coli IAI39]
Length = 671
Score = 41.2 bits (95), Expect = 0.051, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ + PEL D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVG 63
>gi|218548148|ref|YP_002381939.1| NAD-dependent DNA ligase LigA [Escherichia fergusonii ATCC 35469]
gi|331684067|ref|ZP_08384663.1| DNA ligase, NAD-dependent [Escherichia coli H299]
gi|254781331|sp|B7LL73|DNLJ_ESCF3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|218355689|emb|CAQ88301.1| DNA ligase, NAD(+)-dependent [Escherichia fergusonii ATCC 35469]
gi|315298233|gb|EFU57493.1| DNA ligase, NAD-dependent [Escherichia coli MS 16-3]
gi|331079019|gb|EGI50221.1| DNA ligase, NAD-dependent [Escherichia coli H299]
Length = 671
Score = 41.2 bits (95), Expect = 0.051, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ + PEL D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVG 63
>gi|215487666|ref|YP_002330097.1| NAD-dependent DNA ligase LigA [Escherichia coli O127:H6 str.
E2348/69]
gi|312967700|ref|ZP_07781915.1| DNA ligase, NAD-dependent [Escherichia coli 2362-75]
gi|254781317|sp|B7UGB2|DNLJ_ECO27 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|215265738|emb|CAS10145.1| DNA ligase, NAD(+)-dependent [Escherichia coli O127:H6 str.
E2348/69]
gi|312287897|gb|EFR15802.1| DNA ligase, NAD-dependent [Escherichia coli 2362-75]
Length = 671
Score = 41.2 bits (95), Expect = 0.051, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ + PEL D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVG 63
>gi|159044058|ref|YP_001532852.1| DNA ligase [Dinoroseobacter shibae DFL 12]
gi|190359252|sp|A8LK52|DNLJ_DINSH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|157911818|gb|ABV93251.1| DNA ligase [Dinoroseobacter shibae DFL 12]
Length = 741
Score = 41.2 bits (95), Expect = 0.051, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 37/73 (50%)
Query: 46 DKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFP 105
D V +LS+ A E+ L ++ Y+R D P +D YD + +R A++ +FP
Sbjct: 37 DTYVAVEALSEAAARKELARLSELLARANAEYHRDDAPSLSDADYDALKQRNAAIEARFP 96
Query: 106 ELFDEDHPWNTVG 118
+L D P + VG
Sbjct: 97 DLKRGDSPSDQVG 109
>gi|91211748|ref|YP_541734.1| NAD-dependent DNA ligase LigA [Escherichia coli UTI89]
gi|117624619|ref|YP_853532.1| NAD-dependent DNA ligase LigA [Escherichia coli APEC O1]
gi|218559359|ref|YP_002392272.1| NAD-dependent DNA ligase LigA [Escherichia coli S88]
gi|237704934|ref|ZP_04535415.1| NAD-dependent DNA ligase LigA [Escherichia sp. 3_2_53FAA]
gi|331658566|ref|ZP_08359510.1| DNA ligase, NAD-dependent [Escherichia coli TA206]
gi|123084405|sp|Q1R8W1|DNLJ_ECOUT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|166215402|sp|A1ADS8|DNLJ_ECOK1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254781318|sp|B7MHR5|DNLJ_ECO45 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|91073322|gb|ABE08203.1| DNA ligase [Escherichia coli UTI89]
gi|115513743|gb|ABJ01818.1| NAD-dependent DNA ligase LigA [Escherichia coli APEC O1]
gi|218366128|emb|CAR03873.1| DNA ligase, NAD(+)-dependent [Escherichia coli S88]
gi|226901300|gb|EEH87559.1| NAD-dependent DNA ligase LigA [Escherichia sp. 3_2_53FAA]
gi|294491726|gb|ADE90482.1| DNA ligase, NAD-dependent [Escherichia coli IHE3034]
gi|307626016|gb|ADN70320.1| NAD-dependent DNA ligase LigA [Escherichia coli UM146]
gi|315288164|gb|EFU47564.1| DNA ligase, NAD-dependent [Escherichia coli MS 110-3]
gi|323949546|gb|EGB45434.1| DNA ligase [Escherichia coli H252]
gi|323955668|gb|EGB51426.1| DNA ligase [Escherichia coli H263]
gi|331054231|gb|EGI26258.1| DNA ligase, NAD-dependent [Escherichia coli TA206]
Length = 671
Score = 41.2 bits (95), Expect = 0.051, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ + PEL D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVG 63
>gi|24113756|ref|NP_708266.1| NAD-dependent DNA ligase LigA [Shigella flexneri 2a str. 301]
gi|30063805|ref|NP_837976.1| NAD-dependent DNA ligase LigA [Shigella flexneri 2a str. 2457T]
gi|110806352|ref|YP_689872.1| NAD-dependent DNA ligase LigA [Shigella flexneri 5 str. 8401]
gi|81723177|sp|Q83K81|DNLJ_SHIFL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|122366427|sp|Q0T298|DNLJ_SHIF8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|24052834|gb|AAN43973.1| DNA ligase [Shigella flexneri 2a str. 301]
gi|30042060|gb|AAP17786.1| DNA ligase [Shigella flexneri 2a str. 2457T]
gi|110615900|gb|ABF04567.1| DNA ligase [Shigella flexneri 5 str. 8401]
gi|281601828|gb|ADA74812.1| DNA ligase, NAD-dependent [Shigella flexneri 2002017]
gi|313650866|gb|EFS15266.1| DNA ligase, NAD-dependent [Shigella flexneri 2a str. 2457T]
gi|332755453|gb|EGJ85817.1| DNA ligase, NAD-dependent [Shigella flexneri K-671]
gi|332756263|gb|EGJ86614.1| DNA ligase, NAD-dependent [Shigella flexneri 2747-71]
gi|333002064|gb|EGK21630.1| DNA ligase, NAD-dependent [Shigella flexneri K-218]
Length = 671
Score = 41.2 bits (95), Expect = 0.051, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ + PEL D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVG 63
>gi|51893963|ref|YP_076654.1| NAD-dependent DNA ligase [Symbiobacterium thermophilum IAM 14863]
gi|81388077|sp|Q67KI8|DNLJ_SYMTH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|51857652|dbj|BAD41810.1| NAD-dependent DNA ligase [Symbiobacterium thermophilum IAM 14863]
Length = 673
Score = 41.2 bits (95), Expect = 0.051, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L++ HH+ YY + P +D +D + + L L+E FP+L D P VG
Sbjct: 13 LIETIRHHEYLYYVKNEPEISDAAFDELMQELKQLEEAFPDLRRPDSPTQRVG 65
>gi|157161876|ref|YP_001459194.1| NAD-dependent DNA ligase LigA [Escherichia coli HS]
gi|253772690|ref|YP_003035521.1| NAD-dependent DNA ligase LigA [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254162394|ref|YP_003045502.1| NAD-dependent DNA ligase LigA [Escherichia coli B str. REL606]
gi|297517308|ref|ZP_06935694.1| NAD-dependent DNA ligase LigA [Escherichia coli OP50]
gi|300928569|ref|ZP_07144093.1| DNA ligase, NAD-dependent [Escherichia coli MS 187-1]
gi|190359254|sp|A8A2Q7|DNLJ_ECOHS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|157067556|gb|ABV06811.1| DNA ligase, NAD-dependent [Escherichia coli HS]
gi|242378018|emb|CAQ32789.1| DNA ligase [Escherichia coli BL21(DE3)]
gi|253323734|gb|ACT28336.1| DNA ligase, NAD-dependent [Escherichia coli 'BL21-Gold(DE3)pLysS
AG']
gi|253974295|gb|ACT39966.1| NAD-dependent DNA ligase LigA [Escherichia coli B str. REL606]
gi|253978462|gb|ACT44132.1| NAD-dependent DNA ligase LigA [Escherichia coli BL21(DE3)]
gi|300463441|gb|EFK26934.1| DNA ligase, NAD-dependent [Escherichia coli MS 187-1]
gi|323961212|gb|EGB56824.1| DNA ligase [Escherichia coli H489]
gi|323970900|gb|EGB66151.1| DNA ligase [Escherichia coli TA007]
gi|332344237|gb|AEE57571.1| DNA ligase, NAD-dependent LigA [Escherichia coli UMNK88]
Length = 671
Score = 41.2 bits (95), Expect = 0.051, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ + PEL D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVG 63
>gi|16130337|ref|NP_416906.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr.
MG1655]
gi|89109225|ref|AP_003005.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr.
W3110]
gi|170019306|ref|YP_001724260.1| NAD-dependent DNA ligase LigA [Escherichia coli ATCC 8739]
gi|170082020|ref|YP_001731340.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr.
DH10B]
gi|188495579|ref|ZP_03002849.1| DNA ligase, NAD-dependent [Escherichia coli 53638]
gi|238901574|ref|YP_002927370.1| DNA ligase, NAD(+)-dependent [Escherichia coli BW2952]
gi|256021895|ref|ZP_05435760.1| NAD-dependent DNA ligase LigA [Escherichia sp. 4_1_40B]
gi|300951893|ref|ZP_07165701.1| DNA ligase, NAD-dependent [Escherichia coli MS 116-1]
gi|300957240|ref|ZP_07169472.1| DNA ligase, NAD-dependent [Escherichia coli MS 175-1]
gi|301023745|ref|ZP_07187485.1| DNA ligase, NAD-dependent [Escherichia coli MS 196-1]
gi|312973347|ref|ZP_07787519.1| DNA ligase, NAD-dependent [Escherichia coli 1827-70]
gi|2506362|sp|P15042|DNLJ_ECOLI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254781324|sp|B1XA82|DNLJ_ECODH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254781325|sp|B1IX60|DNLJ_ECOLC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|149242732|pdb|2OWO|A Chain A, Last Stop On The Road To Repair: Structure Of E.Coli Dna
Ligase Bound To Nicked Dna-Adenylate
gi|146613|gb|AAA24070.1| DNA ligase (EC 6.5.1.2) [Escherichia coli]
gi|1788750|gb|AAC75464.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr.
MG1655]
gi|85675396|dbj|BAA16282.2| DNA ligase, NAD(+)-dependent [Escherichia coli str. K12 substr.
W3110]
gi|169754234|gb|ACA76933.1| DNA ligase, NAD-dependent [Escherichia coli ATCC 8739]
gi|169889855|gb|ACB03562.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr.
DH10B]
gi|188490778|gb|EDU65881.1| DNA ligase, NAD-dependent [Escherichia coli 53638]
gi|238860822|gb|ACR62820.1| DNA ligase, NAD(+)-dependent [Escherichia coli BW2952]
gi|260448502|gb|ACX38924.1| DNA ligase, NAD-dependent [Escherichia coli DH1]
gi|299880716|gb|EFI88927.1| DNA ligase, NAD-dependent [Escherichia coli MS 196-1]
gi|300315993|gb|EFJ65777.1| DNA ligase, NAD-dependent [Escherichia coli MS 175-1]
gi|300448878|gb|EFK12498.1| DNA ligase, NAD-dependent [Escherichia coli MS 116-1]
gi|309702699|emb|CBJ02028.1| DNA ligase [Escherichia coli ETEC H10407]
gi|310331942|gb|EFP99177.1| DNA ligase, NAD-dependent [Escherichia coli 1827-70]
gi|315137042|dbj|BAJ44201.1| NAD-dependent DNA ligase LigA [Escherichia coli DH1]
gi|315615662|gb|EFU96294.1| DNA ligase, NAD-dependent [Escherichia coli 3431]
gi|323936436|gb|EGB32725.1| DNA ligase [Escherichia coli E1520]
gi|323941344|gb|EGB37529.1| DNA ligase [Escherichia coli E482]
Length = 671
Score = 41.2 bits (95), Expect = 0.051, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ + PEL D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVG 63
>gi|325962711|ref|YP_004240617.1| DNA ligase, NAD-dependent [Arthrobacter phenanthrenivorans Sphe3]
gi|323468798|gb|ADX72483.1| DNA ligase, NAD-dependent [Arthrobacter phenanthrenivorans Sphe3]
Length = 767
Score = 41.2 bits (95), Expect = 0.051, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E E LV + ++ YY+ D PL +D +D + RL+ ++ PEL D P VG
Sbjct: 32 EYENLVDLVRKYRFAYYQEDAPLVSDAEFDELFRRLEEIEALHPELVSNDSPTQEVG 88
>gi|157363572|ref|YP_001470339.1| DNA ligase, NAD-dependent [Thermotoga lettingae TMO]
gi|190359296|sp|A8F541|DNLJ_THELT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|157314176|gb|ABV33275.1| DNA ligase, NAD-dependent [Thermotoga lettingae TMO]
Length = 678
Score = 41.2 bits (95), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+H YY L +P+ +D YDR+ + L L++++PEL D P VG
Sbjct: 20 YHNYRYYVLADPIISDEEYDRLMQELIELEKKYPELVTPDSPSQRVG 66
>gi|90408119|ref|ZP_01216289.1| DNA ligase [Psychromonas sp. CNPT3]
gi|90310805|gb|EAS38920.1| DNA ligase [Psychromonas sp. CNPT3]
Length = 667
Score = 41.2 bits (95), Expect = 0.052, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++V+ L + + YY LD P +D YD V ++L A++ + P L E+ P VG
Sbjct: 5 LQVKKLTEQLEEYNYQYYVLDEPSISDAQYDAVFQQLKAIESEHPHLLHENSPTQKVG 62
>gi|186680717|ref|YP_001863913.1| NAD-dependent DNA ligase LigA [Nostoc punctiforme PCC 73102]
gi|254781381|sp|B2J3P0|DNLJ_NOSP7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|186463169|gb|ACC78970.1| DNA ligase, NAD-dependent [Nostoc punctiforme PCC 73102]
Length = 678
Score = 41.2 bits (95), Expect = 0.052, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P+ D +YD++ L L+ Q+PEL D P VG
Sbjct: 25 YYVLDTPIMEDSVYDQLYRELQQLEIQYPELTAPDSPTQRVG 66
>gi|332977611|gb|EGK14379.1| NAD-dependent DNA ligase LigA [Psychrobacter sp. 1501(2011)]
Length = 695
Score = 41.2 bits (95), Expect = 0.053, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 42 ESWLDKAKKVTSLSKGEAMI--EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDA 99
+S K + SL++ + I ++ L+ H YY +D P +D YD++ L
Sbjct: 8 QSQTTKMNAIKSLNQEQQDIVAKMRTLITEVRKHNNAYYVMDEPTISDNEYDQLRLSLIE 67
Query: 100 LQEQFPELFDEDHPWNTVG 118
L+E++P+L D P +VG
Sbjct: 68 LEERYPDLTQSDSPTASVG 86
>gi|323341293|ref|ZP_08081538.1| NAD-dependent DNA ligase LigA [Lactobacillus ruminis ATCC 25644]
gi|323091287|gb|EFZ33914.1| NAD-dependent DNA ligase LigA [Lactobacillus ruminis ATCC 25644]
Length = 671
Score = 41.2 bits (95), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 34/65 (52%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K EA E+E L + + YY LD P D +YD +RL L+ +FPEL +D P
Sbjct: 1 MDKEEAKKELESLREKLTKWSREYYVLDAPTVEDHVYDENYKRLLELEAKFPELVTKDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SQRVG 65
>gi|323170330|gb|EFZ55983.1| DNA ligase, NAD-dependent [Escherichia coli LT-68]
Length = 671
Score = 41.2 bits (95), Expect = 0.053, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ + PEL D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVG 63
>gi|320196260|gb|EFW70884.1| DNA ligase [Escherichia coli WV_060327]
Length = 671
Score = 41.2 bits (95), Expect = 0.053, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ + PEL D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVG 63
>gi|320185101|gb|EFW59881.1| DNA ligase [Shigella flexneri CDC 796-83]
Length = 671
Score = 41.2 bits (95), Expect = 0.053, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ + PEL D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVG 63
>gi|331648073|ref|ZP_08349163.1| DNA ligase, NAD-dependent [Escherichia coli M605]
gi|331042933|gb|EGI15073.1| DNA ligase, NAD-dependent [Escherichia coli M605]
Length = 671
Score = 41.2 bits (95), Expect = 0.053, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ + PEL D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVG 63
>gi|301648064|ref|ZP_07247828.1| DNA ligase, NAD-dependent [Escherichia coli MS 146-1]
gi|307139053|ref|ZP_07498409.1| NAD-dependent DNA ligase LigA [Escherichia coli H736]
gi|331643032|ref|ZP_08344167.1| DNA ligase, NAD-dependent [Escherichia coli H736]
gi|301073835|gb|EFK88641.1| DNA ligase, NAD-dependent [Escherichia coli MS 146-1]
gi|331039830|gb|EGI12050.1| DNA ligase, NAD-dependent [Escherichia coli H736]
Length = 671
Score = 41.2 bits (95), Expect = 0.053, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ + PEL D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVG 63
>gi|300923365|ref|ZP_07139409.1| DNA ligase, NAD-dependent [Escherichia coli MS 182-1]
gi|300420362|gb|EFK03673.1| DNA ligase, NAD-dependent [Escherichia coli MS 182-1]
Length = 671
Score = 41.2 bits (95), Expect = 0.053, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ + PEL D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVG 63
>gi|209764254|gb|ACI80439.1| DNA ligase [Escherichia coli]
Length = 671
Score = 41.2 bits (95), Expect = 0.053, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ + PEL D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVG 63
>gi|220935192|ref|YP_002514091.1| DNA ligase (NAD(+)) [Thioalkalivibrio sp. HL-EbGR7]
gi|254781444|sp|B8GTL0|DNLJ_THISH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|219996502|gb|ACL73104.1| DNA ligase (NAD(+)) [Thioalkalivibrio sp. HL-EbGR7]
Length = 675
Score = 41.2 bits (95), Expect = 0.053, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+H YY LD+P D YD + L L+ ++PEL D P VG
Sbjct: 21 YHNHRYYVLDDPEIPDAAYDALMRELQDLEAKYPELVTPDSPTQRVG 67
>gi|170767420|ref|ZP_02901873.1| DNA ligase, NAD-dependent [Escherichia albertii TW07627]
gi|170123754|gb|EDS92685.1| DNA ligase, NAD-dependent [Escherichia albertii TW07627]
Length = 671
Score = 41.2 bits (95), Expect = 0.053, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ + PEL D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRELEAKHPELITPDSPTQRVG 63
>gi|109947386|ref|YP_664614.1| NAD-dependent DNA ligase LigA [Helicobacter acinonychis str.
Sheeba]
gi|123362647|sp|Q17XL1|DNLJ_HELAH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|109714607|emb|CAJ99615.1| DNA ligase [Helicobacter acinonychis str. Sheeba]
Length = 654
Score = 41.2 bits (95), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S+ E + +EYL ++ HH YY LD P+ +D +YD + + L A +E+ P + P
Sbjct: 4 SQKEYLERIEYLNTLS-HH---YYNLDEPIVSDAVYDELYQELKAYEEKNPSQIQANSPT 59
Query: 115 NTVG 118
VG
Sbjct: 60 QKVG 63
>gi|146615|gb|AAA24071.1| lig peptide [Escherichia coli]
Length = 671
Score = 41.2 bits (95), Expect = 0.053, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ + PEL D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVG 63
>gi|82777805|ref|YP_404154.1| NAD-dependent DNA ligase LigA [Shigella dysenteriae Sd197]
gi|309784866|ref|ZP_07679499.1| DNA ligase, NAD-dependent [Shigella dysenteriae 1617]
gi|123728534|sp|Q32DE2|DNLJ_SHIDS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|81241953|gb|ABB62663.1| DNA ligase [Shigella dysenteriae Sd197]
gi|308927236|gb|EFP72710.1| DNA ligase, NAD-dependent [Shigella dysenteriae 1617]
Length = 671
Score = 41.2 bits (95), Expect = 0.053, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ + PEL D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVG 63
>gi|74312947|ref|YP_311366.1| NAD-dependent DNA ligase LigA [Shigella sonnei Ss046]
gi|123732314|sp|Q3YZD1|DNLJ_SHISS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|73856424|gb|AAZ89131.1| DNA ligase [Shigella sonnei Ss046]
gi|323169148|gb|EFZ54825.1| DNA ligase, NAD-dependent [Shigella sonnei 53G]
Length = 671
Score = 41.2 bits (95), Expect = 0.053, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ + PEL D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVG 63
>gi|26248787|ref|NP_754827.1| NAD-dependent DNA ligase LigA [Escherichia coli CFT073]
gi|170680446|ref|YP_001744602.1| NAD-dependent DNA ligase LigA [Escherichia coli SMS-3-5]
gi|227887457|ref|ZP_04005262.1| NAD-dependent DNA ligase LigA [Escherichia coli 83972]
gi|300981618|ref|ZP_07175608.1| DNA ligase, NAD-dependent [Escherichia coli MS 45-1]
gi|301046300|ref|ZP_07193464.1| DNA ligase, NAD-dependent [Escherichia coli MS 185-1]
gi|81475373|sp|Q8FFC1|DNLJ_ECOL6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254781328|sp|B1LMK5|DNLJ_ECOSM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|26109193|gb|AAN81395.1|AE016764_77 DNA ligase [Escherichia coli CFT073]
gi|170518164|gb|ACB16342.1| DNA ligase, NAD-dependent [Escherichia coli SMS-3-5]
gi|227835807|gb|EEJ46273.1| NAD-dependent DNA ligase LigA [Escherichia coli 83972]
gi|300301715|gb|EFJ58100.1| DNA ligase, NAD-dependent [Escherichia coli MS 185-1]
gi|300408962|gb|EFJ92500.1| DNA ligase, NAD-dependent [Escherichia coli MS 45-1]
gi|307554453|gb|ADN47228.1| DNA ligase [Escherichia coli ABU 83972]
gi|315293473|gb|EFU52825.1| DNA ligase, NAD-dependent [Escherichia coli MS 153-1]
gi|323977408|gb|EGB72494.1| DNA ligase [Escherichia coli TW10509]
Length = 671
Score = 41.2 bits (95), Expect = 0.053, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ + PEL D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVG 63
>gi|15802944|ref|NP_288973.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 EDL933]
gi|12516784|gb|AAG57530.1|AE005471_7 DNA ligase [Escherichia coli O157:H7 str. EDL933]
Length = 671
Score = 41.2 bits (95), Expect = 0.053, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ + PEL D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVG 63
>gi|15832537|ref|NP_311310.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str. Sakai]
gi|168768500|ref|ZP_02793507.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4486]
gi|168778374|ref|ZP_02803381.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4076]
gi|208813694|ref|ZP_03255023.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4045]
gi|208821178|ref|ZP_03261498.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4042]
gi|209399429|ref|YP_002271890.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4115]
gi|217326968|ref|ZP_03443051.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. TW14588]
gi|254794365|ref|YP_003079202.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str.
TW14359]
gi|261223146|ref|ZP_05937427.1| DNA ligase, NAD(+)-dependent [Escherichia coli O157:H7 str.
FRIK2000]
gi|261259301|ref|ZP_05951834.1| DNA ligase, NAD(+)-dependent [Escherichia coli O157:H7 str.
FRIK966]
gi|291283640|ref|YP_003500458.1| DNA ligase [Escherichia coli O55:H7 str. CB9615]
gi|166215595|sp|Q8XBL5|DNLJ_ECO57 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254781320|sp|B5YZV8|DNLJ_ECO5E RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|13362753|dbj|BAB36706.1| DNA ligase [Escherichia coli O157:H7 str. Sakai]
gi|189003243|gb|EDU72229.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4076]
gi|189362250|gb|EDU80669.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4486]
gi|208734971|gb|EDZ83658.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4045]
gi|208741301|gb|EDZ88983.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4042]
gi|209160829|gb|ACI38262.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4115]
gi|209764248|gb|ACI80436.1| DNA ligase [Escherichia coli]
gi|209764250|gb|ACI80437.1| DNA ligase [Escherichia coli]
gi|209764252|gb|ACI80438.1| DNA ligase [Escherichia coli]
gi|209764256|gb|ACI80440.1| DNA ligase [Escherichia coli]
gi|217319335|gb|EEC27760.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. TW14588]
gi|254593765|gb|ACT73126.1| DNA ligase, NAD(+)-dependent [Escherichia coli O157:H7 str.
TW14359]
gi|290763513|gb|ADD57474.1| DNA ligase [Escherichia coli O55:H7 str. CB9615]
gi|320188751|gb|EFW63410.1| DNA ligase [Escherichia coli O157:H7 str. EC1212]
gi|320640925|gb|EFX10409.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str. G5101]
gi|320646206|gb|EFX15133.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H- str.
493-89]
gi|320651712|gb|EFX20092.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H- str. H
2687]
gi|320657097|gb|EFX24906.1| NAD-dependent DNA ligase LigA [Escherichia coli O55:H7 str. 3256-97
TW 07815]
gi|320662857|gb|EFX30185.1| NAD-dependent DNA ligase LigA [Escherichia coli O55:H7 str. USDA
5905]
gi|320667743|gb|EFX34654.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str.
LSU-61]
gi|326340214|gb|EGD64018.1| DNA ligase [Escherichia coli O157:H7 str. 1125]
gi|326344216|gb|EGD67977.1| DNA ligase [Escherichia coli O157:H7 str. 1044]
Length = 671
Score = 41.2 bits (95), Expect = 0.053, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ + PEL D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVG 63
>gi|110642595|ref|YP_670325.1| NAD-dependent DNA ligase LigA [Escherichia coli 536]
gi|191174600|ref|ZP_03036093.1| DNA ligase, NAD-dependent [Escherichia coli F11]
gi|300997757|ref|ZP_07181842.1| DNA ligase, NAD-dependent [Escherichia coli MS 200-1]
gi|306814500|ref|ZP_07448662.1| NAD-dependent DNA ligase LigA [Escherichia coli NC101]
gi|122958158|sp|Q0TF55|DNLJ_ECOL5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|110344187|gb|ABG70424.1| DNA ligase [Escherichia coli 536]
gi|190905126|gb|EDV64772.1| DNA ligase, NAD-dependent [Escherichia coli F11]
gi|222034142|emb|CAP76883.1| DNA ligase [Escherichia coli LF82]
gi|300304141|gb|EFJ58661.1| DNA ligase, NAD-dependent [Escherichia coli MS 200-1]
gi|305851894|gb|EFM52346.1| NAD-dependent DNA ligase LigA [Escherichia coli NC101]
gi|312947007|gb|ADR27834.1| NAD-dependent DNA ligase LigA [Escherichia coli O83:H1 str. NRG
857C]
gi|324011127|gb|EGB80346.1| DNA ligase, NAD-dependent [Escherichia coli MS 60-1]
Length = 671
Score = 41.2 bits (95), Expect = 0.053, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ + PEL D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVG 63
>gi|157156100|ref|YP_001463741.1| NAD-dependent DNA ligase LigA [Escherichia coli E24377A]
gi|193066723|ref|ZP_03047750.1| DNA ligase, NAD-dependent [Escherichia coli E22]
gi|194430461|ref|ZP_03062941.1| DNA ligase, NAD-dependent [Escherichia coli B171]
gi|209919893|ref|YP_002293977.1| NAD-dependent DNA ligase LigA [Escherichia coli SE11]
gi|218554944|ref|YP_002387857.1| NAD-dependent DNA ligase LigA [Escherichia coli IAI1]
gi|218696047|ref|YP_002403714.1| NAD-dependent DNA ligase LigA [Escherichia coli 55989]
gi|256017438|ref|ZP_05431303.1| NAD-dependent DNA ligase LigA [Shigella sp. D9]
gi|260845052|ref|YP_003222830.1| DNA ligase LigA, NAD(+)-dependent [Escherichia coli O103:H2 str.
12009]
gi|260856513|ref|YP_003230404.1| DNA ligase LigA, NAD(+)-dependent [Escherichia coli O26:H11 str.
11368]
gi|260869108|ref|YP_003235510.1| DNA ligase LigA, NAD(+)-dependent [Escherichia coli O111:H- str.
11128]
gi|293446772|ref|ZP_06663194.1| DNA ligase [Escherichia coli B088]
gi|300817349|ref|ZP_07097566.1| DNA ligase, NAD-dependent [Escherichia coli MS 107-1]
gi|300820921|ref|ZP_07101071.1| DNA ligase, NAD-dependent [Escherichia coli MS 119-7]
gi|300903139|ref|ZP_07121073.1| DNA ligase, NAD-dependent [Escherichia coli MS 84-1]
gi|300921341|ref|ZP_07137704.1| DNA ligase, NAD-dependent [Escherichia coli MS 115-1]
gi|301306250|ref|ZP_07212323.1| DNA ligase, NAD-dependent [Escherichia coli MS 124-1]
gi|301328910|ref|ZP_07221944.1| DNA ligase, NAD-dependent [Escherichia coli MS 78-1]
gi|307312589|ref|ZP_07592222.1| DNA ligase, NAD-dependent [Escherichia coli W]
gi|309794543|ref|ZP_07688966.1| DNA ligase, NAD-dependent [Escherichia coli MS 145-7]
gi|331669152|ref|ZP_08370000.1| DNA ligase, NAD-dependent [Escherichia coli TA271]
gi|331678399|ref|ZP_08379074.1| DNA ligase, NAD-dependent [Escherichia coli H591]
gi|332278439|ref|ZP_08390852.1| NAD-dependent DNA ligase LigA [Shigella sp. D9]
gi|190359253|sp|A7ZPL2|DNLJ_ECO24 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254781319|sp|B7LCF6|DNLJ_ECO55 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254781323|sp|B7M6S1|DNLJ_ECO8A RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254781327|sp|B6I4Y8|DNLJ_ECOSE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|157078130|gb|ABV17838.1| DNA ligase, NAD-dependent [Escherichia coli E24377A]
gi|192925627|gb|EDV80294.1| DNA ligase, NAD-dependent [Escherichia coli E22]
gi|194411494|gb|EDX27836.1| DNA ligase, NAD-dependent [Escherichia coli B171]
gi|209913152|dbj|BAG78226.1| DNA ligase [Escherichia coli SE11]
gi|218352779|emb|CAU98567.1| DNA ligase, NAD(+)-dependent [Escherichia coli 55989]
gi|218361712|emb|CAQ99309.1| DNA ligase, NAD(+)-dependent [Escherichia coli IAI1]
gi|257755162|dbj|BAI26664.1| DNA ligase LigA, NAD(+)-dependent [Escherichia coli O26:H11 str.
11368]
gi|257760199|dbj|BAI31696.1| DNA ligase LigA, NAD(+)-dependent [Escherichia coli O103:H2 str.
12009]
gi|257765464|dbj|BAI36959.1| DNA ligase LigA, NAD(+)-dependent [Escherichia coli O111:H- str.
11128]
gi|291323602|gb|EFE63030.1| DNA ligase [Escherichia coli B088]
gi|300404835|gb|EFJ88373.1| DNA ligase, NAD-dependent [Escherichia coli MS 84-1]
gi|300411729|gb|EFJ95039.1| DNA ligase, NAD-dependent [Escherichia coli MS 115-1]
gi|300526674|gb|EFK47743.1| DNA ligase, NAD-dependent [Escherichia coli MS 119-7]
gi|300529975|gb|EFK51037.1| DNA ligase, NAD-dependent [Escherichia coli MS 107-1]
gi|300838493|gb|EFK66253.1| DNA ligase, NAD-dependent [Escherichia coli MS 124-1]
gi|300844712|gb|EFK72472.1| DNA ligase, NAD-dependent [Escherichia coli MS 78-1]
gi|306907512|gb|EFN38016.1| DNA ligase, NAD-dependent [Escherichia coli W]
gi|308121999|gb|EFO59261.1| DNA ligase, NAD-dependent [Escherichia coli MS 145-7]
gi|315061736|gb|ADT76063.1| DNA ligase, NAD(+)-dependent [Escherichia coli W]
gi|315256427|gb|EFU36395.1| DNA ligase, NAD-dependent [Escherichia coli MS 85-1]
gi|320199974|gb|EFW74563.1| DNA ligase [Escherichia coli EC4100B]
gi|323156318|gb|EFZ42476.1| DNA ligase, NAD-dependent [Escherichia coli EPECa14]
gi|323159458|gb|EFZ45441.1| DNA ligase, NAD-dependent [Escherichia coli E128010]
gi|323177463|gb|EFZ63051.1| DNA ligase, NAD-dependent [Escherichia coli 1180]
gi|323184284|gb|EFZ69660.1| DNA ligase, NAD-dependent [Escherichia coli 1357]
gi|323377683|gb|ADX49951.1| DNA ligase, NAD-dependent [Escherichia coli KO11]
gi|323944634|gb|EGB40701.1| DNA ligase [Escherichia coli H120]
gi|324020175|gb|EGB89394.1| DNA ligase, NAD-dependent [Escherichia coli MS 117-3]
gi|324118125|gb|EGC12023.1| DNA ligase [Escherichia coli E1167]
gi|331064346|gb|EGI36257.1| DNA ligase, NAD-dependent [Escherichia coli TA271]
gi|331074859|gb|EGI46179.1| DNA ligase, NAD-dependent [Escherichia coli H591]
gi|332100791|gb|EGJ04137.1| NAD-dependent DNA ligase LigA [Shigella sp. D9]
Length = 671
Score = 41.2 bits (95), Expect = 0.053, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ + PEL D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVG 63
>gi|330912204|gb|EGH40714.1| DNA ligase [Escherichia coli AA86]
Length = 671
Score = 41.2 bits (95), Expect = 0.054, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ + PEL D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVG 63
>gi|294631529|ref|ZP_06710089.1| DNA ligase, NAD-dependent [Streptomyces sp. e14]
gi|292834862|gb|EFF93211.1| DNA ligase, NAD-dependent [Streptomyces sp. e14]
Length = 732
Score = 41.2 bits (95), Expect = 0.054, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 32/62 (51%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
EA E L + H+ YY D P+ +D +DR+ L+AL+E++PEL D P
Sbjct: 3 AEAREEHARLAEQVEEHRFRYYVKDAPVISDADFDRLLRSLEALEERYPELRTPDSPTQK 62
Query: 117 VG 118
V
Sbjct: 63 VA 64
>gi|313106533|ref|ZP_07792762.1| DNA ligase [Pseudomonas aeruginosa 39016]
gi|310879264|gb|EFQ37858.1| DNA ligase [Pseudomonas aeruginosa 39016]
Length = 794
Score = 41.2 bits (95), Expect = 0.054, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 23/45 (51%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
H YY LD P D YDR+ L AL+ ++P+L D P V
Sbjct: 21 HNYRYYVLDEPSIPDAEYDRLFRELQALETEYPQLLTPDSPTQRV 65
>gi|296390104|ref|ZP_06879579.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa PAb1]
Length = 794
Score = 41.2 bits (95), Expect = 0.054, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 23/45 (51%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
H YY LD P D YDR+ L AL+ ++P+L D P V
Sbjct: 21 HNYRYYVLDEPSIPDAEYDRLFRELQALETEYPQLLTPDSPTQRV 65
>gi|254360665|ref|ZP_04976814.1| DNA ligase (NAD(+)) [Mannheimia haemolytica PHL213]
gi|153091205|gb|EDN73210.1| DNA ligase (NAD(+)) [Mannheimia haemolytica PHL213]
Length = 685
Score = 41.2 bits (95), Expect = 0.054, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 31/61 (50%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E + ++E + + ++ Y+ LDNP D YDR+ L L+ Q PEL D P V
Sbjct: 17 ELVEKIETIRQTLRQYEYEYHVLDNPSVPDAEYDRLMNELKNLEWQHPELISADSPTQRV 76
Query: 118 G 118
G
Sbjct: 77 G 77
>gi|15596726|ref|NP_250220.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa PAO1]
gi|107100960|ref|ZP_01364878.1| hypothetical protein PaerPA_01001990 [Pseudomonas aeruginosa PACS2]
gi|218892513|ref|YP_002441382.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa LESB58]
gi|81541359|sp|Q9I3I4|DNLJ_PSEAE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254781394|sp|B7UVJ3|DNLJ_PSEA8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|9947487|gb|AAG04918.1|AE004581_5 DNA ligase [Pseudomonas aeruginosa PAO1]
gi|218772741|emb|CAW28526.1| DNA ligase [Pseudomonas aeruginosa LESB58]
Length = 794
Score = 41.2 bits (95), Expect = 0.054, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 23/45 (51%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
H YY LD P D YDR+ L AL+ ++P+L D P V
Sbjct: 21 HNYRYYVLDEPSIPDAEYDRLFRELQALEAEYPQLLTPDSPTQRV 65
>gi|254239878|ref|ZP_04933200.1| DNA ligase [Pseudomonas aeruginosa 2192]
gi|126193256|gb|EAZ57319.1| DNA ligase [Pseudomonas aeruginosa 2192]
Length = 794
Score = 41.2 bits (95), Expect = 0.054, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 23/45 (51%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
H YY LD P D YDR+ L AL+ ++P+L D P V
Sbjct: 21 HNYRYYVLDEPSIPDAEYDRLFRELQALEAEYPQLLTPDSPTQRV 65
>gi|254234624|ref|ZP_04927947.1| DNA ligase [Pseudomonas aeruginosa C3719]
gi|126166555|gb|EAZ52066.1| DNA ligase [Pseudomonas aeruginosa C3719]
Length = 794
Score = 41.2 bits (95), Expect = 0.054, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 23/45 (51%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
H YY LD P D YDR+ L AL+ ++P+L D P V
Sbjct: 21 HNYRYYVLDEPSIPDAEYDRLFRELQALEAEYPQLLTPDSPTQRV 65
>gi|116049473|ref|YP_791724.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa UCBPP-PA14]
gi|122258581|sp|Q02K12|DNLJ_PSEAB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|115584694|gb|ABJ10709.1| DNA ligase [Pseudomonas aeruginosa UCBPP-PA14]
Length = 794
Score = 41.2 bits (95), Expect = 0.054, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 23/45 (51%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
H YY LD P D YDR+ L AL+ ++P+L D P V
Sbjct: 21 HNYRYYVLDEPSIPDAEYDRLFRELQALETEYPQLLTPDSPTQRV 65
>gi|261493319|ref|ZP_05989845.1| NAD-dependent DNA ligase LigA [Mannheimia haemolytica serotype A2
str. BOVINE]
gi|261310963|gb|EEY12140.1| NAD-dependent DNA ligase LigA [Mannheimia haemolytica serotype A2
str. BOVINE]
Length = 685
Score = 40.8 bits (94), Expect = 0.055, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 31/61 (50%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E + ++E + + ++ Y+ LDNP D YDR+ L L+ Q PEL D P V
Sbjct: 17 ELVEKIETIRQTLRQYEYEYHVLDNPSVPDAEYDRLMNELKNLEWQHPELISADSPTQRV 76
Query: 118 G 118
G
Sbjct: 77 G 77
>gi|261496584|ref|ZP_05992964.1| NAD-dependent DNA ligase LigA [Mannheimia haemolytica serotype A2
str. OVINE]
gi|261307787|gb|EEY09110.1| NAD-dependent DNA ligase LigA [Mannheimia haemolytica serotype A2
str. OVINE]
Length = 685
Score = 40.8 bits (94), Expect = 0.055, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 31/61 (50%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E + ++E + + ++ Y+ LDNP D YDR+ L L+ Q PEL D P V
Sbjct: 17 ELVEKIETIRQTLRQYEYEYHVLDNPSVPDAEYDRLMNELKNLEWQHPELISADSPTQRV 76
Query: 118 G 118
G
Sbjct: 77 G 77
>gi|317014035|gb|ADU81471.1| NAD-dependent DNA ligase LigA [Helicobacter pylori Gambia94/24]
Length = 656
Score = 40.8 bits (94), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S+ E + +EYL ++ HH YY LD P+ +D +YD + + L A +E+ P + P
Sbjct: 4 SQKEYLERIEYLNTLS-HH---YYNLDEPIVSDAVYDELYQELKAYEEENPNRIQANSPT 59
Query: 115 NTVG 118
VG
Sbjct: 60 QKVG 63
>gi|332519658|ref|ZP_08396122.1| DNA ligase, NAD-dependent [Lacinutrix algicola 5H-3-7-4]
gi|332044217|gb|EGI80411.1| DNA ligase, NAD-dependent [Lacinutrix algicola 5H-3-7-4]
Length = 665
Score = 40.8 bits (94), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 30/57 (52%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E+E L + H YY LDNP +D +D + L AL+E PE FD + P VG
Sbjct: 6 EIEQLRQELREHNYNYYVLDNPTISDYDFDIKLKELQALEEAHPEFFDANSPTLRVG 62
>gi|189425977|ref|YP_001953154.1| DNA ligase, NAD-dependent [Geobacter lovleyi SZ]
gi|254781338|sp|B3E8F8|DNLJ_GEOLS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|189422236|gb|ACD96634.1| DNA ligase, NAD-dependent [Geobacter lovleyi SZ]
Length = 683
Score = 40.8 bits (94), Expect = 0.056, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 29/60 (48%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
A + L ++ HH + YY LD+P +D YD + L ++ P+L D P VG
Sbjct: 16 AQLRAAELRRLLEHHNRCYYELDSPEISDAEYDALFRELQVIEAARPDLLTPDSPTLRVG 75
>gi|108798849|ref|YP_639046.1| NAD-dependent DNA ligase LigA [Mycobacterium sp. MCS]
gi|119867964|ref|YP_937916.1| NAD-dependent DNA ligase LigA [Mycobacterium sp. KMS]
gi|126434449|ref|YP_001070140.1| NAD-dependent DNA ligase LigA [Mycobacterium sp. JLS]
gi|123369452|sp|Q1BAU4|DNLJ_MYCSS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|166216212|sp|A3PXM2|DNLJ_MYCSJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|166216213|sp|A1UE68|DNLJ_MYCSK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|108769268|gb|ABG07990.1| DNA ligase, NAD-dependent [Mycobacterium sp. MCS]
gi|119694053|gb|ABL91126.1| DNA ligase, NAD-dependent [Mycobacterium sp. KMS]
gi|126234249|gb|ABN97649.1| DNA ligase, NAD-dependent [Mycobacterium sp. JLS]
Length = 701
Score = 40.8 bits (94), Expect = 0.056, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HQ YY D P+ +D +D++ ++L+AL+ + PEL D P VG
Sbjct: 36 HQFRYYVRDAPVISDADFDKLFQQLEALEAEHPELRAPDSPTQLVG 81
>gi|260581847|ref|ZP_05849643.1| DNA ligase, NAD-dependent [Haemophilus influenzae NT127]
gi|260095040|gb|EEW78932.1| DNA ligase, NAD-dependent [Haemophilus influenzae NT127]
Length = 679
Score = 40.8 bits (94), Expect = 0.057, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L K ++ Y+ LDNP D YDR+ +L AL+ + PE D P VG
Sbjct: 16 QLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPTQRVG 72
>gi|229846132|ref|ZP_04466244.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 7P49H1]
gi|229811136|gb|EEP46853.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 7P49H1]
Length = 670
Score = 40.8 bits (94), Expect = 0.057, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L K ++ Y+ LDNP D YDR+ +L AL+ + PE D P VG
Sbjct: 7 QLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPTQRVG 63
>gi|30995424|ref|NP_439257.2| NAD-dependent DNA ligase LigA [Haemophilus influenzae Rd KW20]
gi|145638086|ref|ZP_01793696.1| DNA ligase [Haemophilus influenzae PittII]
gi|166214918|sp|P43813|DNLJ_HAEIN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|145272415|gb|EDK12322.1| DNA ligase [Haemophilus influenzae PittII]
gi|309751252|gb|ADO81236.1| NAD-dependent DNA ligase [Haemophilus influenzae R2866]
Length = 670
Score = 40.8 bits (94), Expect = 0.057, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L K ++ Y+ LDNP D YDR+ +L AL+ + PE D P VG
Sbjct: 7 QLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPTQRVG 63
>gi|319776649|ref|YP_004139137.1| DNA ligase, NAD(+)-dependent [Haemophilus influenzae F3047]
gi|329124164|ref|ZP_08252711.1| NAD-dependent DNA ligase LigA [Haemophilus aegyptius ATCC 11116]
gi|317451240|emb|CBY87473.1| DNA ligase, NAD(+)-dependent [Haemophilus influenzae F3047]
gi|327467589|gb|EGF13087.1| NAD-dependent DNA ligase LigA [Haemophilus aegyptius ATCC 11116]
Length = 670
Score = 40.8 bits (94), Expect = 0.057, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L K ++ Y+ LDNP D YDR+ +L AL+ + PE D P VG
Sbjct: 7 QLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPTQRVG 63
>gi|319897423|ref|YP_004135620.1| DNA ligase, nad(+)-dependent [Haemophilus influenzae F3031]
gi|317432929|emb|CBY81295.1| DNA ligase, NAD(+)-dependent [Haemophilus influenzae F3031]
Length = 679
Score = 40.8 bits (94), Expect = 0.057, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L K ++ Y+ LDNP D YDR+ +L AL+ + PE D P VG
Sbjct: 16 QLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPTQRVG 72
>gi|148828262|ref|YP_001293015.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae PittGG]
gi|166215779|sp|A5UIM6|DNLJ_HAEIG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|148719504|gb|ABR00632.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae PittGG]
Length = 670
Score = 40.8 bits (94), Expect = 0.057, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L K ++ Y+ LDNP D YDR+ +L AL+ + PE D P VG
Sbjct: 7 QLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPTQRVG 63
>gi|145636448|ref|ZP_01792116.1| DNA ligase [Haemophilus influenzae PittHH]
gi|145270273|gb|EDK10208.1| DNA ligase [Haemophilus influenzae PittHH]
Length = 670
Score = 40.8 bits (94), Expect = 0.057, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L K ++ Y+ LDNP D YDR+ +L AL+ + PE D P VG
Sbjct: 7 QLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPTQRVG 63
>gi|161761269|ref|YP_248767.2| NAD-dependent DNA ligase LigA [Haemophilus influenzae 86-028NP]
gi|166215835|sp|Q4QLJ0|DNLJ_HAEI8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|309973429|gb|ADO96630.1| NAD-dependent DNA ligase [Haemophilus influenzae R2846]
Length = 670
Score = 40.8 bits (94), Expect = 0.057, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L K ++ Y+ LDNP D YDR+ +L AL+ + PE D P VG
Sbjct: 7 QLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPTQRVG 63
>gi|148826285|ref|YP_001291038.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae PittEE]
gi|166215778|sp|A5UD04|DNLJ_HAEIE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|148716445|gb|ABQ98655.1| DNA ligase [Haemophilus influenzae PittEE]
Length = 670
Score = 40.8 bits (94), Expect = 0.058, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L K ++ Y+ LDNP D YDR+ +L AL+ + PE D P VG
Sbjct: 7 QLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPTQRVG 63
>gi|34499358|ref|NP_903573.1| DNA ligase [Chromobacterium violaceum ATCC 12472]
gi|81654398|sp|Q7NR81|DNLJ_CHRVO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|34105208|gb|AAQ61564.1| DNA ligase [Chromobacterium violaceum ATCC 12472]
Length = 821
Score = 40.8 bits (94), Expect = 0.058, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 22/42 (52%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ L AL+E PEL D P VG
Sbjct: 40 YYVLDAPTVPDAEYDRLFRELQALEEAHPELAVSDSPTRRVG 81
>gi|104780921|ref|YP_607419.1| NAD-dependent DNA ligase LigA [Pseudomonas entomophila L48]
gi|122985912|sp|Q1ICK0|DNLJ_PSEE4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|95109908|emb|CAK14613.1| NAD-dependent DNA ligase [Pseudomonas entomophila L48]
Length = 784
Score = 40.8 bits (94), Expect = 0.059, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 23/47 (48%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY LD P D YDR+ L AL+ + P+L D P VG
Sbjct: 16 QHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPQLVTADSPTQRVG 62
>gi|270262950|ref|ZP_06191221.1| DNA ligase, NAD-dependent [Serratia odorifera 4Rx13]
gi|270043634|gb|EFA16727.1| DNA ligase, NAD-dependent [Serratia odorifera 4Rx13]
Length = 673
Score = 40.8 bits (94), Expect = 0.059, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 23/47 (48%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ LD P D YDR+ L L+ PEL D P VG
Sbjct: 17 HHEYQYHVLDAPEVPDAEYDRLMNELRELENAHPELITADSPTQRVG 63
>gi|254556107|ref|YP_003062524.1| DNA ligase (NAD+) [Lactobacillus plantarum JDM1]
gi|300766626|ref|ZP_07076543.1| NAD-dependent DNA ligase LigA [Lactobacillus plantarum subsp.
plantarum ATCC 14917]
gi|308180104|ref|YP_003924232.1| DNA ligase (NAD+) [Lactobacillus plantarum subsp. plantarum ST-III]
gi|254045034|gb|ACT61827.1| DNA ligase (NAD+) [Lactobacillus plantarum JDM1]
gi|300495726|gb|EFK30877.1| NAD-dependent DNA ligase LigA [Lactobacillus plantarum subsp.
plantarum ATCC 14917]
gi|308045595|gb|ADN98138.1| DNA ligase (NAD+) [Lactobacillus plantarum subsp. plantarum ST-III]
Length = 679
Score = 40.8 bits (94), Expect = 0.059, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 35/71 (49%)
Query: 48 AKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
A K +++ +A E L + ++ YY D P D +YD+ ERL L++ FP+L
Sbjct: 2 ADKPNTMTVEQAADEAAALRQTLNEWRRQYYDEDAPNVEDSVYDQKYERLVELEQTFPQL 61
Query: 108 FDEDHPWNTVG 118
D P VG
Sbjct: 62 VTPDSPTQLVG 72
>gi|28377923|ref|NP_784815.1| DNA ligase (NAD+) [Lactobacillus plantarum WCFS1]
gi|81631729|sp|Q88XQ0|DNLJ_LACPL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|28270757|emb|CAD63662.1| DNA ligase (NAD+) [Lactobacillus plantarum WCFS1]
Length = 679
Score = 40.8 bits (94), Expect = 0.059, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 35/71 (49%)
Query: 48 AKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
A K +++ +A E L + ++ YY D P D +YD+ ERL L++ FP+L
Sbjct: 2 ADKPNTMTVEQAADEAAALRQTLNEWRRQYYDEDAPNVEDSVYDQKYERLVELEQTFPQL 61
Query: 108 FDEDHPWNTVG 118
D P VG
Sbjct: 62 VTPDSPTQLVG 72
>gi|15611625|ref|NP_223276.1| NAD-dependent DNA ligase LigA [Helicobacter pylori J99]
gi|7674020|sp|Q9ZLM1|DNLJ_HELPJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|4155109|gb|AAD06141.1| DNA LIGASE [Helicobacter pylori J99]
Length = 656
Score = 40.8 bits (94), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S+ E + +EYL ++ HH YY LD P+ +D +YD + + L A +E+ P + P
Sbjct: 4 SQKEYLERIEYLNTLS-HH---YYNLDEPIVSDAVYDELYQELKAYEEENPNRIQANSPT 59
Query: 115 NTVG 118
VG
Sbjct: 60 QKVG 63
>gi|300867541|ref|ZP_07112191.1| DNA ligase [Oscillatoria sp. PCC 6506]
gi|300334429|emb|CBN57361.1| DNA ligase [Oscillatoria sp. PCC 6506]
Length = 690
Score = 40.8 bits (94), Expect = 0.060, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P+ D +YDR+ L L+ Q PEL + P VG
Sbjct: 23 YYVLDTPIMPDEVYDRLYRELQELETQHPELISLESPTQRVG 64
>gi|94499335|ref|ZP_01305873.1| DNA ligase, NAD-dependent [Oceanobacter sp. RED65]
gi|94428967|gb|EAT13939.1| DNA ligase, NAD-dependent [Oceanobacter sp. RED65]
Length = 694
Score = 40.8 bits (94), Expect = 0.060, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD+P D YDR+ L L+ + PEL +D P VG
Sbjct: 40 YYVLDDPSIPDAEYDRLFHELKGLESKHPELLTKDSPTQRVG 81
>gi|171059186|ref|YP_001791535.1| DNA ligase, NAD-dependent [Leptothrix cholodnii SP-6]
gi|254781357|sp|B1Y6D4|DNLJ_LEPCP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|170776631|gb|ACB34770.1| DNA ligase, NAD-dependent [Leptothrix cholodnii SP-6]
Length = 768
Score = 40.8 bits (94), Expect = 0.060, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 23/46 (50%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
HH YY LD P D YDR+ + L A++ +P L D P V
Sbjct: 47 HHAHLYYVLDAPELPDAEYDRLFQELQAIEAMYPALRTADSPTQRV 92
>gi|16125769|ref|NP_420333.1| DNA ligase, NAD-dependent [Caulobacter crescentus CB15]
gi|221234527|ref|YP_002516963.1| NAD-dependent DNA ligase [Caulobacter crescentus NA1000]
gi|81535469|sp|Q9A842|DNLJ_CAUCR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254781280|sp|B8H5Y7|DNLJ_CAUCN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|13422903|gb|AAK23501.1| DNA ligase, NAD-dependent [Caulobacter crescentus CB15]
gi|220963699|gb|ACL95055.1| NAD-dependent DNA ligase [Caulobacter crescentus NA1000]
Length = 783
Score = 40.8 bits (94), Expect = 0.060, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 36/68 (52%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V L++ +A+ ++E L + H Y++ DNP +D YD + R ++ +FP L +
Sbjct: 6 VADLTEAQAVEDLERLADLLATHDIAYHQEDNPTVSDAEYDALKRRNLDIETRFPHLVRD 65
Query: 111 DHPWNTVG 118
+ P VG
Sbjct: 66 NSPSMRVG 73
>gi|322373465|ref|ZP_08048001.1| DNA ligase, NAD-dependent [Streptococcus sp. C150]
gi|321278507|gb|EFX55576.1| DNA ligase, NAD-dependent [Streptococcus sp. C150]
Length = 652
Score = 40.8 bits (94), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ K YY DNP +D YD++ L AL+ + PEL D P + VG
Sbjct: 14 QYAKEYYTEDNPSVSDAEYDKLYRELVALEAEHPELVQADSPTHRVG 60
>gi|297571016|ref|YP_003696790.1| DNA ligase, NAD-dependent [Arcanobacterium haemolyticum DSM 20595]
gi|296931363|gb|ADH92171.1| DNA ligase, NAD-dependent [Arcanobacterium haemolyticum DSM 20595]
Length = 843
Score = 40.8 bits (94), Expect = 0.061, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 31/61 (50%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+A + + L L Q+ YY + + D YD + L AL+E+FP+L+ D P V
Sbjct: 11 DAQVRWQELAPQLLDAQETYYSTGDQVMVDATYDALMRELRALEEEFPQLWSPDSPSTKV 70
Query: 118 G 118
G
Sbjct: 71 G 71
>gi|254502790|ref|ZP_05114941.1| DNA ligase, NAD-dependent [Labrenzia alexandrii DFL-11]
gi|222438861|gb|EEE45540.1| DNA ligase, NAD-dependent [Labrenzia alexandrii DFL-11]
Length = 725
Score = 40.8 bits (94), Expect = 0.061, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 33/68 (48%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V L+ A E+E L H + Y++ D P +D YD + R A++ +FP+L
Sbjct: 18 VLDLTPEAAKAELERLASEIAEHDRRYHQEDAPTISDADYDALRRRNSAIEARFPDLILA 77
Query: 111 DHPWNTVG 118
D P VG
Sbjct: 78 DGPSAQVG 85
>gi|145630192|ref|ZP_01785974.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae R3021]
gi|144984473|gb|EDJ91896.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae R3021]
Length = 670
Score = 40.8 bits (94), Expect = 0.061, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L K ++ Y+ LDNP D YDR+ +L AL+ + PE D P VG
Sbjct: 7 QLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPTQRVG 63
>gi|260580185|ref|ZP_05848015.1| DNA ligase, NAD-dependent [Haemophilus influenzae RdAW]
gi|1574651|gb|AAC22753.1| DNA ligase (lig) [Haemophilus influenzae Rd KW20]
gi|260093469|gb|EEW77402.1| DNA ligase, NAD-dependent [Haemophilus influenzae RdAW]
Length = 679
Score = 40.8 bits (94), Expect = 0.061, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L K ++ Y+ LDNP D YDR+ +L AL+ + PE D P VG
Sbjct: 16 QLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPTQRVG 72
>gi|68057854|gb|AAX88107.1| DNA ligase [Haemophilus influenzae 86-028NP]
Length = 679
Score = 40.8 bits (94), Expect = 0.061, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L K ++ Y+ LDNP D YDR+ +L AL+ + PE D P VG
Sbjct: 16 QLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPTQRVG 72
>gi|197121145|ref|YP_002133096.1| DNA ligase, NAD-dependent [Anaeromyxobacter sp. K]
gi|254781542|sp|B4UDH6|DNLJ_ANASK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|196170994|gb|ACG71967.1| DNA ligase, NAD-dependent [Anaeromyxobacter sp. K]
Length = 687
Score = 40.8 bits (94), Expect = 0.062, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 21/41 (51%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
YY LD PL D YDR+ L AL+ PEL D P V
Sbjct: 24 YYVLDQPLLADAEYDRLMHELQALEADHPELVTADSPTQRV 64
>gi|307293327|ref|ZP_07573173.1| DNA ligase, NAD-dependent [Sphingobium chlorophenolicum L-1]
gi|306881393|gb|EFN12609.1| DNA ligase, NAD-dependent [Sphingobium chlorophenolicum L-1]
Length = 711
Score = 40.8 bits (94), Expect = 0.062, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 31/67 (46%)
Query: 52 TSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
T +++ EA + L + H + Y+ D P TD YD + +AL+ FP L D
Sbjct: 5 TPMTEAEAANRLMRLAREIARHNRLYHDQDQPEITDAAYDALIRENNALEAAFPHLIRSD 64
Query: 112 HPWNTVG 118
P VG
Sbjct: 65 SPNAQVG 71
>gi|166216286|sp|A0KVI4|DNLJ_SHESA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
Length = 689
Score = 40.8 bits (94), Expect = 0.062, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY D P TD YDR+ +RL L+ ++P+ D P VG
Sbjct: 37 HNIRYYVDDAPSITDSEYDRLMQRLKQLEAEYPQFVAADSPTQRVG 82
>gi|126668324|ref|ZP_01739283.1| DNA ligase, NAD-dependent [Marinobacter sp. ELB17]
gi|126627241|gb|EAZ97879.1| DNA ligase, NAD-dependent [Marinobacter sp. ELB17]
Length = 703
Score = 40.8 bits (94), Expect = 0.062, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY LD+P D YDR+ L AL+ ++PEL P VG
Sbjct: 22 HNHHYYVLDDPQVPDAEYDRLFRGLQALEAEYPELATATSPTQRVG 67
>gi|117920017|ref|YP_869209.1| DNA ligase, NAD-dependent [Shewanella sp. ANA-3]
gi|117612349|gb|ABK47803.1| DNA ligase, NAD-dependent [Shewanella sp. ANA-3]
Length = 691
Score = 40.8 bits (94), Expect = 0.062, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY D P TD YDR+ +RL L+ ++P+ D P VG
Sbjct: 39 HNIRYYVDDAPSITDSEYDRLMQRLKQLEAEYPQFVAADSPTQRVG 84
>gi|288958932|ref|YP_003449273.1| DNA ligase (NAD+) [Azospirillum sp. B510]
gi|288911240|dbj|BAI72729.1| DNA ligase (NAD+) [Azospirillum sp. B510]
Length = 788
Score = 40.8 bits (94), Expect = 0.063, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH + Y++ D P TD YD + R A++ +FPEL D P VG
Sbjct: 37 HHDRLYHQQDQPEITDADYDALVRRNLAIEARFPELRRADSPSLRVG 83
>gi|207109554|ref|ZP_03243716.1| NAD-dependent DNA ligase LigA [Helicobacter pylori HPKX_438_CA4C1]
Length = 87
Score = 40.8 bits (94), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
Query: 64 EYLVKIAL-----HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
EYL +IA HH YY LD+P+ +D +YD + + L A +E+ P + P VG
Sbjct: 7 EYLERIAYLNTLSHH---YYNLDDPIVSDAVYDELYQELKAYEEKNPNSIQANSPTQKVG 63
>gi|149911742|ref|ZP_01900348.1| NAD-dependent DNA ligase [Moritella sp. PE36]
gi|149805167|gb|EDM65187.1| NAD-dependent DNA ligase [Moritella sp. PE36]
Length = 482
Score = 40.8 bits (94), Expect = 0.064, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+HQ YY LDNP D YDR+ L L+ +FPEL P VG
Sbjct: 19 NHQ--YYVLDNPTVPDAEYDRLLRELKQLETEFPELALATSPTQKVG 63
>gi|295688860|ref|YP_003592553.1| DNA ligase, NAD-dependent [Caulobacter segnis ATCC 21756]
gi|295430763|gb|ADG09935.1| DNA ligase, NAD-dependent [Caulobacter segnis ATCC 21756]
Length = 783
Score = 40.8 bits (94), Expect = 0.064, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 35/68 (51%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V L++ +A+ E+E L H Y++ DNP +D YD + R ++ +FP L +
Sbjct: 6 VADLTEAQAVEELERLADELTRHDLAYHQQDNPTISDADYDALKRRNLDIETRFPHLVRD 65
Query: 111 DHPWNTVG 118
+ P VG
Sbjct: 66 NSPSMRVG 73
>gi|70729275|ref|YP_259012.1| NAD-dependent DNA ligase LigA [Pseudomonas fluorescens Pf-5]
gi|123734866|sp|Q4KFH1|DNLJ_PSEF5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|68343574|gb|AAY91180.1| DNA ligase, NAD-dependent [Pseudomonas fluorescens Pf-5]
Length = 788
Score = 40.8 bits (94), Expect = 0.064, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 23/47 (48%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H Y+ LD P D YDR+ L AL+ + PEL D P VG
Sbjct: 17 QHNYRYHVLDEPSIPDAEYDRLFRELKALEAEHPELVTSDSPTQRVG 63
>gi|312962450|ref|ZP_07776941.1| DNA ligase [Pseudomonas fluorescens WH6]
gi|311283377|gb|EFQ61967.1| DNA ligase [Pseudomonas fluorescens WH6]
Length = 789
Score = 40.8 bits (94), Expect = 0.065, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 23/47 (48%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H Y+ LD P D YDR+ L AL+ + PEL D P VG
Sbjct: 17 QHNYRYHVLDEPSIPDAEYDRLFHELKALEAEHPELVTRDSPTQRVG 63
>gi|58426627|gb|AAW75664.1| DNA ligase [Xanthomonas oryzae pv. oryzae KACC10331]
Length = 961
Score = 40.8 bits (94), Expect = 0.065, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 39 RALESWLDKAKKVTSLSKG--EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSER 96
RA+E + + V ++ +G E E+ ++ A H YY L +P TD YD++
Sbjct: 106 RAIELKILSGQLVETMEQGVIERARELRRRIENADHR---YYDLADPEITDAQYDQLFRE 162
Query: 97 LDALQEQFPELFDEDHPWNTVG 118
L L++++PEL D P VG
Sbjct: 163 LQELEQKYPELVTADSPSMRVG 184
>gi|302524940|ref|ZP_07277282.1| DNA ligase, NAD-dependent [Streptomyces sp. AA4]
gi|302433835|gb|EFL05651.1| DNA ligase, NAD-dependent [Streptomyces sp. AA4]
Length = 707
Score = 40.8 bits (94), Expect = 0.066, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HQ YY LD+P+ +DG +D + L +++++P L D P VG
Sbjct: 28 HQFRYYVLDSPIISDGQFDALLGDLQKIEDEYPALVTPDSPTQNVG 73
>gi|166216288|sp|Q0HWD2|DNLJ_SHESR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
Length = 688
Score = 40.8 bits (94), Expect = 0.066, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY D P TD YDR+ +RL L+ ++P+ D P VG
Sbjct: 37 HNIRYYVDDAPSITDSEYDRLMQRLKQLEAEYPQFVAADSPTQRVG 82
>gi|114047080|ref|YP_737630.1| DNA ligase, NAD-dependent [Shewanella sp. MR-7]
gi|113888522|gb|ABI42573.1| DNA ligase, NAD-dependent [Shewanella sp. MR-7]
Length = 690
Score = 40.8 bits (94), Expect = 0.066, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY D P TD YDR+ +RL L+ ++P+ D P VG
Sbjct: 39 HNIRYYVDDAPSITDSEYDRLMQRLKQLEAEYPQFVAADSPTQRVG 84
>gi|322652148|gb|EFY48510.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
Length = 571
Score = 40.8 bits (94), Expect = 0.066, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ Q P+L D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVG 63
>gi|322613832|gb|EFY10771.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|322617441|gb|EFY14340.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|322624929|gb|EFY21758.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|322629628|gb|EFY26404.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|322633942|gb|EFY30679.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|322635621|gb|EFY32332.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|322639981|gb|EFY36651.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|322644326|gb|EFY40867.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|322655311|gb|EFY51620.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|322658357|gb|EFY54623.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|322664357|gb|EFY60554.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|322668412|gb|EFY64568.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|322673252|gb|EFY69358.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|322676644|gb|EFY72712.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|322683394|gb|EFY79408.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|322685720|gb|EFY81713.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|323192602|gb|EFZ77831.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|323196835|gb|EFZ81978.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|323202141|gb|EFZ87199.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|323208024|gb|EFZ92969.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|323212850|gb|EFZ97659.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|323217119|gb|EGA01841.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|323219619|gb|EGA04102.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|323229192|gb|EGA13316.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|323235493|gb|EGA19577.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|323237321|gb|EGA21384.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|323245552|gb|EGA29550.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|323248968|gb|EGA32891.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|323253065|gb|EGA36897.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|323255865|gb|EGA39610.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|323261411|gb|EGA44996.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|323266454|gb|EGA49942.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|323269716|gb|EGA53166.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
Length = 671
Score = 40.8 bits (94), Expect = 0.066, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ Q P+L D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVG 63
>gi|300087757|ref|YP_003758279.1| DNA ligase, NAD-dependent [Dehalogenimonas lykanthroporepellens
BL-DC-9]
gi|299527490|gb|ADJ25958.1| DNA ligase, NAD-dependent [Dehalogenimonas lykanthroporepellens
BL-DC-9]
Length = 687
Score = 40.8 bits (94), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
EA ++ L K HH YY D P +D YD + L L+ +FPEL ++ P V
Sbjct: 3 EAKKRIDTLRKQITHHNYLYYVKDEPEISDQEYDILFRELQILENEFPELASDESPTKIV 62
Query: 118 G 118
G
Sbjct: 63 G 63
>gi|238912842|ref|ZP_04656679.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Tennessee str. CDC07-0191]
Length = 671
Score = 40.8 bits (94), Expect = 0.066, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ Q P+L D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVG 63
>gi|224583040|ref|YP_002636838.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|254781413|sp|C0PZB4|DNLJ_SALPC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|224467567|gb|ACN45397.1| DNA ligase [Salmonella enterica subsp. enterica serovar Paratyphi C
strain RKS4594]
Length = 671
Score = 40.8 bits (94), Expect = 0.066, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ Q P+L D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVG 63
>gi|207857840|ref|YP_002244491.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|254781409|sp|B5R3V4|DNLJ_SALEP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|206709643|emb|CAR33993.1| DNA ligase [Salmonella enterica subsp. enterica serovar Enteritidis
str. P125109]
Length = 671
Score = 40.8 bits (94), Expect = 0.066, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ Q P+L D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVG 63
>gi|205353534|ref|YP_002227335.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|254781410|sp|B5RCP9|DNLJ_SALG2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|205273315|emb|CAR38285.1| DNA ligase [Salmonella enterica subsp. enterica serovar Gallinarum
str. 287/91]
gi|326628629|gb|EGE34972.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9]
Length = 671
Score = 40.8 bits (94), Expect = 0.066, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ Q P+L D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVG 63
>gi|168817829|ref|ZP_02829829.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|205345161|gb|EDZ31925.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|320086917|emb|CBY96687.1| DNA ligase [Salmonella enterica subsp. enterica serovar Weltevreden
str. 2007-60-3289-1]
Length = 671
Score = 40.8 bits (94), Expect = 0.066, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ Q P+L D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVG 63
>gi|200388789|ref|ZP_03215401.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|199605887|gb|EDZ04432.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
Length = 671
Score = 40.8 bits (94), Expect = 0.066, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ Q P+L D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVG 63
>gi|168466836|ref|ZP_02700690.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|195630762|gb|EDX49354.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
Length = 671
Score = 40.8 bits (94), Expect = 0.066, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ Q P+L D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVG 63
>gi|168261543|ref|ZP_02683516.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|205349337|gb|EDZ35968.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
Length = 671
Score = 40.8 bits (94), Expect = 0.066, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ Q P+L D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVG 63
>gi|194444893|ref|YP_002041687.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|254781412|sp|B4SZU5|DNLJ_SALNS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|194403556|gb|ACF63778.1| DNA ligase [Salmonella enterica subsp. enterica serovar Newport
str. SL254]
Length = 671
Score = 40.8 bits (94), Expect = 0.066, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ Q P+L D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVG 63
>gi|168243193|ref|ZP_02668125.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|194449589|ref|YP_002046491.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|254781411|sp|B4TCF6|DNLJ_SALHS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|194407893|gb|ACF68112.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|205337689|gb|EDZ24453.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
Length = 671
Score = 40.8 bits (94), Expect = 0.066, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ Q P+L D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVG 63
>gi|204929538|ref|ZP_03220612.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|204321257|gb|EDZ06457.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
Length = 671
Score = 40.8 bits (94), Expect = 0.066, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ Q P+L D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVG 63
>gi|197247622|ref|YP_002147380.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|254781407|sp|B5F0F5|DNLJ_SALA4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|197211325|gb|ACH48722.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
Length = 671
Score = 40.8 bits (94), Expect = 0.066, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ Q P+L D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVG 63
>gi|168238909|ref|ZP_02663967.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|194734182|ref|YP_002115493.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|254781415|sp|B4TQF8|DNLJ_SALSV RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|194709684|gb|ACF88905.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|197288317|gb|EDY27698.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
Length = 671
Score = 40.8 bits (94), Expect = 0.066, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ Q P+L D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVG 63
>gi|168231967|ref|ZP_02657025.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|194471791|ref|ZP_03077775.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194458155|gb|EDX46994.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|205333574|gb|EDZ20338.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
Length = 671
Score = 40.8 bits (94), Expect = 0.066, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ Q P+L D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVG 63
>gi|198243638|ref|YP_002216496.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|254781408|sp|B5FQB9|DNLJ_SALDC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|197938154|gb|ACH75487.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|326624250|gb|EGE30595.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Dublin str. 3246]
Length = 671
Score = 40.8 bits (94), Expect = 0.066, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ Q P+L D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVG 63
>gi|167549563|ref|ZP_02343322.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|205325268|gb|EDZ13107.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
Length = 671
Score = 40.8 bits (94), Expect = 0.066, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ Q P+L D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVG 63
>gi|161612830|ref|YP_001586795.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Paratyphi B str. SPB7]
gi|190359282|sp|A9N362|DNLJ_SALPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|161362194|gb|ABX65962.1| hypothetical protein SPAB_00529 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
Length = 671
Score = 40.8 bits (94), Expect = 0.066, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ Q P+L D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVG 63
>gi|82701780|ref|YP_411346.1| DNA ligase, NAD-dependent [Nitrosospira multiformis ATCC 25196]
gi|123754406|sp|Q2YBB7|DNLJ_NITMU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|82409845|gb|ABB73954.1| DNA ligase, NAD-dependent [Nitrosospira multiformis ATCC 25196]
Length = 707
Score = 40.8 bits (94), Expect = 0.066, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 69 IALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
I LH+ + YY LD P D +D++ L+ L+++ PEL D P VG
Sbjct: 19 IELHNIR-YYELDTPTIPDADFDKLFRELEELEQRHPELITPDSPTQRVG 67
>gi|62180995|ref|YP_217412.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|75481868|sp|Q57LT1|DNLJ_SALCH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|62128628|gb|AAX66331.1| DNA ligase [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|322715476|gb|EFZ07047.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Choleraesuis str. A50]
Length = 671
Score = 40.8 bits (94), Expect = 0.066, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ Q P+L D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVG 63
>gi|56412686|ref|YP_149761.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|197361620|ref|YP_002141256.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|81362021|sp|Q5PNE2|DNLJ_SALPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254781414|sp|B5BB72|DNLJ_SALPK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|56126943|gb|AAV76449.1| DNA ligase [Salmonella enterica subsp. enterica serovar Paratyphi A
str. ATCC 9150]
gi|197093096|emb|CAR58535.1| DNA ligase [Salmonella enterica subsp. enterica serovar Paratyphi A
str. AKU_12601]
Length = 671
Score = 40.8 bits (94), Expect = 0.066, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ Q P+L D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVG 63
>gi|16765747|ref|NP_461362.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|167991721|ref|ZP_02572820.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|197262860|ref|ZP_03162934.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|81522316|sp|Q8ZN89|DNLJ_SALTY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|16420966|gb|AAL21321.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhimurium
str. LT2]
gi|197241115|gb|EDY23735.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|205329843|gb|EDZ16607.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|261247627|emb|CBG25454.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhimurium
str. D23580]
gi|267994529|gb|ACY89414.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|301158979|emb|CBW18492.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhimurium
str. SL1344]
gi|312913414|dbj|BAJ37388.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|321222873|gb|EFX47944.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhimurium
str. TN061786]
gi|323130756|gb|ADX18186.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Typhimurium str. 4/74]
gi|332989355|gb|AEF08338.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
Length = 671
Score = 40.8 bits (94), Expect = 0.066, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ Q P+L D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVG 63
>gi|317049042|ref|YP_004116690.1| DNA ligase, NAD-dependent [Pantoea sp. At-9b]
gi|316950659|gb|ADU70134.1| DNA ligase, NAD-dependent [Pantoea sp. At-9b]
Length = 672
Score = 40.8 bits (94), Expect = 0.067, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ +L L+ PEL D P VG
Sbjct: 17 HHEYLYHVMDTPEVPDAEYDRLMAQLRELESAHPELVTPDSPTQRVG 63
>gi|213962174|ref|ZP_03390438.1| DNA ligase, NAD-dependent [Capnocytophaga sputigena Capno]
gi|213955180|gb|EEB66498.1| DNA ligase, NAD-dependent [Capnocytophaga sputigena Capno]
Length = 663
Score = 40.8 bits (94), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY LDNP +D +D+ + L AL++ PE +DE+ P VG
Sbjct: 14 QHNYNYYILDNPTISDYEFDQKLKELQALEQAHPEFYDENSPTVRVG 60
>gi|154685157|ref|YP_001420318.1| NAD-dependent DNA ligase LigA [Bacillus amyloliquefaciens FZB42]
gi|166215394|sp|A7Z261|DNLJ_BACA2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|154351008|gb|ABS73087.1| LigA [Bacillus amyloliquefaciens FZB42]
Length = 669
Score = 40.8 bits (94), Expect = 0.067, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K A E L + + YY LD P D YDR+ + L A++E+ PEL D P
Sbjct: 2 MDKETAKHRAEELRRTIDQYSYEYYTLDEPSVPDSEYDRLMQELIAIEEEHPELRTPDSP 61
Query: 114 WNTVG 118
VG
Sbjct: 62 TQRVG 66
>gi|166216287|sp|Q0HK31|DNLJ_SHESM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
Length = 688
Score = 40.8 bits (94), Expect = 0.068, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY D P TD YDR+ +RL L+ ++P+ D P VG
Sbjct: 37 HNIRYYVDDAPSITDSEYDRLMQRLKQLEAEYPQFVAADSPTQRVG 82
>gi|113969850|ref|YP_733643.1| DNA ligase, NAD-dependent [Shewanella sp. MR-4]
gi|113884534|gb|ABI38586.1| DNA ligase, NAD-dependent [Shewanella sp. MR-4]
Length = 690
Score = 40.8 bits (94), Expect = 0.068, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY D P TD YDR+ +RL L+ ++P+ D P VG
Sbjct: 39 HNIRYYVDDAPSITDSEYDRLMQRLKQLEAEYPQFVAADSPTQRVG 84
>gi|319939188|ref|ZP_08013551.1| DNA ligase [Streptococcus anginosus 1_2_62CV]
gi|319811584|gb|EFW07860.1| DNA ligase [Streptococcus anginosus 1_2_62CV]
Length = 652
Score = 40.8 bits (94), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LVK+ + YY DNP +D YD++ L L++Q+PE D P + VG
Sbjct: 8 LVKLLNQYAHEYYTTDNPSVSDSEYDKLYHELLDLEKQYPEFVQPDSPTHRVG 60
>gi|124302218|gb|ABN05294.1| DNA ligase [Geobacillus sp. g]
Length = 670
Score = 40.8 bits (94), Expect = 0.068, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY L P D YDR+ + L A++EQ+PEL D P +G
Sbjct: 24 YYVLGRPSVPDAEYDRLMQELMAIEEQYPELKTSDSPTQRIG 65
>gi|29140957|ref|NP_804299.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|213160907|ref|ZP_03346617.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Typhi str. E00-7866]
gi|213424270|ref|ZP_03357114.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Typhi str. E02-1180]
gi|213583650|ref|ZP_03365476.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Typhi str. E98-0664]
gi|213650852|ref|ZP_03380905.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Typhi str. J185]
gi|29136582|gb|AAO68148.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhi str.
Ty2]
Length = 671
Score = 40.8 bits (94), Expect = 0.068, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ Q P+L D P VG
Sbjct: 17 HHEYLYHVMDAPEILDAEYDRLMRELRELEAQRPDLITPDSPTQRVG 63
>gi|16761347|ref|NP_456964.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|81513487|sp|Q8Z4W4|DNLJ_SALTI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|25294013|pir||AI0809 DNA ligase (NAD) (EC 6.5.1.2) - Salmonella enterica subsp. enterica
serovar Typhi (strain CT18)
gi|16503646|emb|CAD07659.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhi]
Length = 671
Score = 40.8 bits (94), Expect = 0.068, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ Q P+L D P VG
Sbjct: 17 HHEYLYHVMDAPEILDAEYDRLMRELRELEAQRPDLITPDSPTQRVG 63
>gi|289581750|ref|YP_003480216.1| DNA ligase, NAD-dependent [Natrialba magadii ATCC 43099]
gi|289531303|gb|ADD05654.1| DNA ligase, NAD-dependent [Natrialba magadii ATCC 43099]
Length = 699
Score = 40.8 bits (94), Expect = 0.069, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
LS EA +VE L H + YY ++PL D YD + ERL L+ F +L D P
Sbjct: 27 LSDDEAEQQVEQLRDAIREHDRRYYVENDPLIADRTYDTLFERLQVLESTF-DLSHPDSP 85
Query: 114 WNTVG 118
+VG
Sbjct: 86 TRSVG 90
>gi|254468809|ref|ZP_05082215.1| DNA ligase, NAD-dependent [beta proteobacterium KB13]
gi|207087619|gb|EDZ64902.1| DNA ligase, NAD-dependent [beta proteobacterium KB13]
Length = 669
Score = 40.8 bits (94), Expect = 0.069, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ YL + H YY LD+P +D YD + L +++ PEL D P VG
Sbjct: 8 KISYLKSVIQEHDHCYYVLDDPQISDHEYDSLLRELKNIEDSNPELITPDSPTQRVG 64
>gi|52313150|emb|CAH55605.1| DNA ligase (NAD dependent) [Bacillus amyloliquefaciens FZB42]
Length = 668
Score = 40.8 bits (94), Expect = 0.069, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K A E L + + YY LD P D YDR+ + L A++E+ PEL D P
Sbjct: 1 MDKETAKHRAEELRRTIDQYSYEYYTLDEPSVPDSEYDRLMQELIAIEEEHPELRTPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|257069044|ref|YP_003155299.1| DNA ligase, NAD-dependent [Brachybacterium faecium DSM 4810]
gi|256559862|gb|ACU85709.1| DNA ligase, NAD-dependent [Brachybacterium faecium DSM 4810]
Length = 871
Score = 40.4 bits (93), Expect = 0.071, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY D P D YD + + L AL+E P+L ED P TVG
Sbjct: 39 YYEHDAPTMADAEYDELEKELRALEEANPQLAAEDSPTRTVG 80
>gi|311233982|gb|ADP86836.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris RCH1]
Length = 818
Score = 40.4 bits (93), Expect = 0.071, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H + YY LD P +D YD + L L+ ++P L DE P VG
Sbjct: 72 HNRLYYELDTPEISDAEYDALYRELVGLETRWPALRDEASPTQRVG 117
>gi|258510685|ref|YP_003184119.1| DNA ligase, NAD-dependent [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
gi|257477411|gb|ACV57730.1| DNA ligase, NAD-dependent [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
Length = 684
Score = 40.4 bits (93), Expect = 0.071, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 34/67 (50%)
Query: 52 TSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
++LS EA + L + +H + YY DNP +D +D + L L+ ++PEL D
Sbjct: 8 SALSLEEARARAKVLREQIEYHNRKYYLEDNPEISDAEWDALMRDLIELERKYPELVDPA 67
Query: 112 HPWNTVG 118
P VG
Sbjct: 68 SPTQRVG 74
>gi|46580019|ref|YP_010827.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris str.
Hildenborough]
gi|81404693|sp|Q72BM7|DNLJ_DESVH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|46449435|gb|AAS96086.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris str.
Hildenborough]
Length = 799
Score = 40.4 bits (93), Expect = 0.071, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H + YY LD P +D YD + L L+ ++P L DE P VG
Sbjct: 53 HNRLYYELDTPEISDAEYDALYRELVGLETRWPALRDEASPTQRVG 98
>gi|225851368|ref|YP_002731602.1| DNA ligase, NAD-dependent [Persephonella marina EX-H1]
gi|254781385|sp|C0QSF6|DNLJ_PERMH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|225645574|gb|ACO03760.1| DNA ligase, NAD-dependent [Persephonella marina EX-H1]
Length = 714
Score = 40.4 bits (93), Expect = 0.072, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 37/73 (50%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
L K KK +K +A +E L + +H YY L NP+ +D YD++ L ++ +F
Sbjct: 17 LLKIKKEHIKTKEDAEAIIEDLRDVIRYHDWRYYVLANPVISDYEYDQLFHLLKDIESRF 76
Query: 105 PELFDEDHPWNTV 117
PEL D P V
Sbjct: 77 PELITPDSPTQRV 89
>gi|33241290|ref|NP_876232.1| NAD-dependent DNA ligase LigA [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
gi|81663882|sp|Q7V9J2|DNLJ_PROMA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|33238820|gb|AAQ00885.1| NAD-dependent DNA ligase [Prochlorococcus marinus subsp. marinus
str. CCMP1375]
Length = 685
Score = 40.4 bits (93), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD+PL D ++DR+ L L++Q+P L D P +G
Sbjct: 24 YYILDSPLIEDAVFDRLYRELIELEKQYPSLVTPDSPSQRLG 65
>gi|254292786|ref|YP_003058809.1| DNA ligase, NAD-dependent [Hirschia baltica ATCC 49814]
gi|254041317|gb|ACT58112.1| DNA ligase, NAD-dependent [Hirschia baltica ATCC 49814]
Length = 792
Score = 40.4 bits (93), Expect = 0.073, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 33/66 (50%)
Query: 53 SLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDH 112
SL+ +A E L + YY D P +D YD + + L AL+ +FP+L +D
Sbjct: 15 SLTLDQARERWEELAETIRQADSAYYEHDAPHLSDADYDALRQDLLALESEFPQLVAQDS 74
Query: 113 PWNTVG 118
P +VG
Sbjct: 75 PSQSVG 80
>gi|120602570|ref|YP_966970.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris DP4]
gi|166215379|sp|A1VDM7|DNLJ2_DESVV RecName: Full=DNA ligase 2; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] 2
gi|120562799|gb|ABM28543.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris DP4]
Length = 797
Score = 40.4 bits (93), Expect = 0.073, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 46 DKAKKVTSLSKGEAMIEVEYLVKIALH-----HQKWYYRLDNPLFTDGLYDRVSERLDAL 100
+ A +VTS ++ +A+ E L H + YY LD P +D YD + L L
Sbjct: 21 NDAAEVTSPARHDAIPEEARQRAAQLRADLERHNRLYYELDTPEISDAEYDVLYRELVGL 80
Query: 101 QEQFPELFDEDHPWNTVG 118
+ ++P L DE P VG
Sbjct: 81 ERRWPALRDEASPTQRVG 98
>gi|332529208|ref|ZP_08405172.1| DNA ligase [Hylemonella gracilis ATCC 19624]
gi|332041431|gb|EGI77793.1| DNA ligase [Hylemonella gracilis ATCC 19624]
Length = 738
Score = 40.4 bits (93), Expect = 0.074, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 23/46 (50%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
HH YY LD P D YDR+ + L A++ PEL D P V
Sbjct: 34 HHAHRYYVLDAPEIPDAEYDRLFQELQAIEAAHPELRTPDSPTQRV 79
>gi|254781172|ref|YP_003065585.1| NAD-dependent DNA ligase LigA [Candidatus Liberibacter asiaticus
str. psy62]
gi|254040849|gb|ACT57645.1| NAD-dependent DNA ligase LigA [Candidatus Liberibacter asiaticus
str. psy62]
Length = 731
Score = 40.4 bits (93), Expect = 0.074, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF-- 108
+ +LS +A E+ L + +H YY+ P+ D YD + R DA+ FP+L
Sbjct: 9 IEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLARS 68
Query: 109 -DEDHPWNTVG 118
D + P N +G
Sbjct: 69 EDPNGPLNKIG 79
>gi|270159993|ref|ZP_06188649.1| DNA ligase [Legionella longbeachae D-4968]
gi|269988332|gb|EEZ94587.1| DNA ligase [Legionella longbeachae D-4968]
Length = 671
Score = 40.4 bits (93), Expect = 0.076, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 21/42 (50%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD PL D YDR L L+ Q PEL D P VG
Sbjct: 24 YYVLDEPLVPDVEYDRCFRALQNLEAQHPELLTADSPTQRVG 65
>gi|317507336|ref|ZP_07965075.1| DNA ligase [Segniliparus rugosus ATCC BAA-974]
gi|316254381|gb|EFV13712.1| DNA ligase [Segniliparus rugosus ATCC BAA-974]
Length = 712
Score = 40.4 bits (93), Expect = 0.076, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 25/46 (54%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HQ YY LD+P TD +D + L AL+++ PEL P VG
Sbjct: 25 HQFRYYVLDSPTVTDAEFDALLRELQALEDEHPELASASSPTKLVG 70
>gi|229843861|ref|ZP_04464002.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 6P18H1]
gi|229812855|gb|EEP48543.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 6P18H1]
Length = 670
Score = 40.4 bits (93), Expect = 0.076, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L K ++ Y+ LDNP D YDR+ +L AL+ + PE D P VG
Sbjct: 7 KINNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPTQRVG 63
>gi|228476991|ref|ZP_04061629.1| DNA ligase, NAD-dependent [Streptococcus salivarius SK126]
gi|228251010|gb|EEK10181.1| DNA ligase, NAD-dependent [Streptococcus salivarius SK126]
Length = 652
Score = 40.4 bits (93), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 64 EYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E +VK+ + K YY DNP +D YD++ L AL+ ++PE D P + VG
Sbjct: 7 ELVVKLN-QYAKEYYTEDNPSVSDAEYDKLYRELVALEAEYPEYVQADSPTHRVG 60
>gi|328552313|gb|AEB22805.1| NAD-dependent DNA ligase LigA [Bacillus amyloliquefaciens TA208]
Length = 668
Score = 40.4 bits (93), Expect = 0.077, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 24/42 (57%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ + L A++E+ PEL D P VG
Sbjct: 24 YYTLDEPSVPDSEYDRLMQELIAIEEEHPELRTPDSPTQRVG 65
>gi|308172548|ref|YP_003919253.1| DNA ligase [Bacillus amyloliquefaciens DSM 7]
gi|307605412|emb|CBI41783.1| DNA ligase [Bacillus amyloliquefaciens DSM 7]
gi|328910657|gb|AEB62253.1| DNA ligase [Bacillus amyloliquefaciens LL3]
Length = 669
Score = 40.4 bits (93), Expect = 0.077, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 24/42 (57%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ + L A++E+ PEL D P VG
Sbjct: 25 YYTLDEPSVPDSEYDRLMQELIAIEEEHPELRTPDSPTQRVG 66
>gi|218289368|ref|ZP_03493602.1| DNA ligase, NAD-dependent [Alicyclobacillus acidocaldarius LAA1]
gi|218240474|gb|EED07655.1| DNA ligase, NAD-dependent [Alicyclobacillus acidocaldarius LAA1]
Length = 684
Score = 40.4 bits (93), Expect = 0.077, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 34/67 (50%)
Query: 52 TSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
++LS EA + L + +H + YY DNP +D +D + L L+ ++PEL D
Sbjct: 8 SALSLEEARARAKVLREQIEYHNRKYYLEDNPEISDAEWDALMRDLIELERKYPELVDPA 67
Query: 112 HPWNTVG 118
P VG
Sbjct: 68 SPTQRVG 74
>gi|9107768|gb|AAF85353.1|AE004063_2 DNA ligase [Xylella fastidiosa 9a5c]
Length = 837
Score = 40.4 bits (93), Expect = 0.077, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
Y+ LD P D YDR+ LDAL+ +P+L D P VG+
Sbjct: 30 YHVLDQPRIPDADYDRMLRELDALEAAYPDLATPDSPTQRVGH 72
>gi|77747612|ref|NP_299833.2| NAD-dependent DNA ligase LigA [Xylella fastidiosa 9a5c]
gi|166216281|sp|Q9PAG2|DNLJ_XYLFA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
Length = 831
Score = 40.4 bits (93), Expect = 0.077, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
Y+ LD P D YDR+ LDAL+ +P+L D P VG+
Sbjct: 24 YHVLDQPRIPDADYDRMLRELDALEAAYPDLATPDSPTQRVGH 66
>gi|289165264|ref|YP_003455402.1| DNA ligase [Legionella longbeachae NSW150]
gi|288858437|emb|CBJ12315.1| DNA ligase [Legionella longbeachae NSW150]
Length = 671
Score = 40.4 bits (93), Expect = 0.077, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 21/42 (50%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD PL D YDR L L+ Q PEL D P VG
Sbjct: 24 YYVLDEPLVPDVEYDRCFRALQNLEAQHPELLTADSPTQRVG 65
>gi|188995252|ref|YP_001929504.1| DNA ligase [Porphyromonas gingivalis ATCC 33277]
gi|254781390|sp|B2RKL2|DNLJ_PORG3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|188594932|dbj|BAG33907.1| DNA ligase [Porphyromonas gingivalis ATCC 33277]
Length = 669
Score = 40.4 bits (93), Expect = 0.079, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 32/58 (55%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ +E L +I H+ YY L +P D YD + ++L+ L+ ++PE D P + VG
Sbjct: 9 VRIEELRRILREHEYRYYVLSSPTIDDFEYDAMMKQLEELEREYPEWDSPDSPTHRVG 66
>gi|34540958|ref|NP_905437.1| DNA ligase, NAD-dependent [Porphyromonas gingivalis W83]
gi|81417286|sp|Q7MV47|DNLJ_PORGI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|34397273|gb|AAQ66336.1| DNA ligase, NAD-dependent [Porphyromonas gingivalis W83]
Length = 669
Score = 40.4 bits (93), Expect = 0.079, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 32/58 (55%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ +E L +I H+ YY L +P D YD + ++L+ L+ ++PE D P + VG
Sbjct: 9 VRIEELRRILREHEYRYYVLSSPTIDDFEYDAMMKQLEELEREYPEWDSPDSPTHRVG 66
>gi|207092489|ref|ZP_03240276.1| NAD-dependent DNA ligase LigA [Helicobacter pylori HPKX_438_AG0C1]
Length = 656
Score = 40.4 bits (93), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
Query: 64 EYLVKIAL-----HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
EYL +IA HH YY LD+P+ +D +YD + + L A +E+ P + P VG
Sbjct: 7 EYLERIAYLNTLSHH---YYNLDDPIVSDAVYDELYQELKAYEEKNPNSIQANSPTQKVG 63
>gi|297626017|ref|YP_003687780.1| DNA ligase (NAD+) [Propionibacterium freudenreichii subsp.
shermanii CIRM-BIA1]
gi|296921782|emb|CBL56340.1| DNA ligase (NAD+) [Propionibacterium freudenreichii subsp.
shermanii CIRM-BIA1]
Length = 764
Score = 40.4 bits (93), Expect = 0.080, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 26/53 (49%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LVK Q+ YY D P TD LYD + L L+ ++P L D P VG
Sbjct: 35 LVKEIDDAQEAYYGRDKPFITDALYDELMLELQKLEAEYPSLRTPDSPTQRVG 87
>gi|28199807|ref|NP_780121.1| NAD-dependent DNA ligase LigA [Xylella fastidiosa Temecula1]
gi|182682559|ref|YP_001830719.1| NAD-dependent DNA ligase LigA [Xylella fastidiosa M23]
gi|81438262|sp|Q87A88|DNLJ_XYLFT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254782314|sp|B2I9S4|DNLJ_XYLF2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|28057928|gb|AAO29770.1| DNA ligase [Xylella fastidiosa Temecula1]
gi|182632669|gb|ACB93445.1| DNA ligase, NAD-dependent [Xylella fastidiosa M23]
gi|307578838|gb|ADN62807.1| NAD-dependent DNA ligase LigA [Xylella fastidiosa subsp. fastidiosa
GB514]
Length = 831
Score = 40.4 bits (93), Expect = 0.080, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
Y+ LD P D YDR+ LDAL+ +P+L D P VG+
Sbjct: 24 YHVLDQPRIPDADYDRMLRELDALEATYPDLATPDSPTQRVGH 66
>gi|71898271|ref|ZP_00680445.1| NAD-dependent DNA ligase [Xylella fastidiosa Ann-1]
gi|71732010|gb|EAO34067.1| NAD-dependent DNA ligase [Xylella fastidiosa Ann-1]
Length = 831
Score = 40.4 bits (93), Expect = 0.080, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
Y+ LD P D YDR+ LDAL+ +P+L D P VG+
Sbjct: 24 YHVLDQPRIPDADYDRMLRELDALEATYPDLATPDSPTQRVGH 66
>gi|71899829|ref|ZP_00681979.1| NAD-dependent DNA ligase [Xylella fastidiosa Ann-1]
gi|254782317|sp|B0U5G7|DNLJ_XYLFM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|71730420|gb|EAO32501.1| NAD-dependent DNA ligase [Xylella fastidiosa Ann-1]
Length = 831
Score = 40.4 bits (93), Expect = 0.081, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
Y+ LD P D YDR+ LDAL+ +P+L D P VG+
Sbjct: 24 YHVLDQPRIPDADYDRMLRELDALEATYPDLATPDSPTQRVGH 66
>gi|71275191|ref|ZP_00651478.1| NAD-dependent DNA ligase [Xylella fastidiosa Dixon]
gi|170731182|ref|YP_001776615.1| NAD-dependent DNA ligase LigA [Xylella fastidiosa M12]
gi|71164000|gb|EAO13715.1| NAD-dependent DNA ligase [Xylella fastidiosa Dixon]
gi|167965975|gb|ACA12985.1| DNA ligase (NAD(+)) [Xylella fastidiosa M12]
Length = 837
Score = 40.4 bits (93), Expect = 0.081, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
Y+ LD P D YDR+ LDAL+ +P+L D P VG+
Sbjct: 30 YHVLDQPRIPDADYDRMLRELDALEATYPDLATPDSPTQRVGH 72
>gi|254422498|ref|ZP_05036216.1| DNA ligase, NAD-dependent [Synechococcus sp. PCC 7335]
gi|196189987|gb|EDX84951.1| DNA ligase, NAD-dependent [Synechococcus sp. PCC 7335]
Length = 694
Score = 40.4 bits (93), Expect = 0.081, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D +YDR+ L L++Q+P L D P VG
Sbjct: 40 YYVLDAPELPDSVYDRLYRELQTLEDQYPGLQTSDSPTQRVG 81
>gi|322513636|ref|ZP_08066733.1| NAD-dependent DNA ligase LigA [Actinobacillus ureae ATCC 25976]
gi|322120561|gb|EFX92462.1| NAD-dependent DNA ligase LigA [Actinobacillus ureae ATCC 25976]
Length = 681
Score = 40.4 bits (93), Expect = 0.082, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 29/57 (50%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++E L + ++ Y+ LDNPL D YDR+ L L+ Q PE D P VG
Sbjct: 17 QLEALRQKLREYEYHYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITADSPTQRVG 73
>gi|145634259|ref|ZP_01789970.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae PittAA]
gi|145268703|gb|EDK08696.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae PittAA]
Length = 670
Score = 40.4 bits (93), Expect = 0.082, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L K ++ Y+ LDNP D YDR+ +L AL+ + PE D P VG
Sbjct: 7 QLDNLRKTLRQYEFEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPTQRVG 63
>gi|331702040|ref|YP_004398999.1| DNA ligase [Lactobacillus buchneri NRRL B-30929]
gi|329129383|gb|AEB73936.1| DNA ligase [Lactobacillus buchneri NRRL B-30929]
Length = 675
Score = 40.4 bits (93), Expect = 0.083, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY D P D +YD+ ++L AL+ QFP++ D P VG
Sbjct: 29 YYTYDAPSVEDAVYDQTYQQLVALENQFPQIVTPDSPTQKVG 70
>gi|322831833|ref|YP_004211860.1| DNA ligase, NAD-dependent [Rahnella sp. Y9602]
gi|321167034|gb|ADW72733.1| DNA ligase, NAD-dependent [Rahnella sp. Y9602]
Length = 673
Score = 40.4 bits (93), Expect = 0.083, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 23/47 (48%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ LD P D YDR+ L L+ PEL D P VG
Sbjct: 17 HHEYQYHVLDAPEVPDAEYDRLMRELRELETAHPELVTADSPTQRVG 63
>gi|332523413|ref|ZP_08399665.1| DNA ligase (NAD+) [Streptococcus porcinus str. Jelinkova 176]
gi|332314677|gb|EGJ27662.1| DNA ligase (NAD+) [Streptococcus porcinus str. Jelinkova 176]
Length = 652
Score = 40.4 bits (93), Expect = 0.083, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L + +++ YY DNP +D YD++ L AL+ ++PE +D P VG
Sbjct: 8 LTNLLNQYRQEYYTNDNPTVSDQEYDKLYHELLALETEYPEFIQKDSPTQGVG 60
>gi|309792382|ref|ZP_07686850.1| DNA ligase, NAD-dependent [Oscillochloris trichoides DG6]
gi|308225603|gb|EFO79363.1| DNA ligase, NAD-dependent [Oscillochloris trichoides DG6]
Length = 674
Score = 40.4 bits (93), Expect = 0.083, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+++ E + +E L + H YY LD+P +D YD + L L+ PEL D P
Sbjct: 1 MAESELVQRIERLRALLREHNYRYYVLDDPNVSDAEYDALMRELRHLEATHPELCSPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|189490484|ref|YP_001957054.1| putative DNA ligase [Pseudomonas phage 201phi2-1]
gi|164609549|gb|ABY63158.1| putative DNA ligase [Pseudomonas phage 201phi2-1]
Length = 695
Score = 40.4 bits (93), Expect = 0.083, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
E + L K H+ YY LD + D LYD++ L L+++ PE D P TVG+
Sbjct: 6 EYDVLCKRIRHYNYMYYVLDISIIPDSLYDQLLISLKLLEKEHPEWVTRDSPTQTVGH 63
>gi|298736308|ref|YP_003728834.1| NAD-dependent DNA ligase LigA [Helicobacter pylori B8]
gi|298355498|emb|CBI66370.1| NAD-dependent DNA ligase LigA [Helicobacter pylori B8]
Length = 656
Score = 40.4 bits (93), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
Query: 64 EYLVKIAL-----HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
EYL +IA HH YY LD+P+ +D +YD + + L A +E+ P + P VG
Sbjct: 7 EYLERIAYLNTLSHH---YYNLDDPIVSDAVYDELYQELKAYEEKNPNSIQANSPTQKVG 63
>gi|302537077|ref|ZP_07289419.1| DNA ligase, NAD-dependent [Streptomyces sp. C]
gi|302445972|gb|EFL17788.1| DNA ligase, NAD-dependent [Streptomyces sp. C]
Length = 736
Score = 40.4 bits (93), Expect = 0.084, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H+ YY D P+ +D +D++ L+AL+EQ+PEL D P V
Sbjct: 28 HRFRYYVNDQPVVSDAEFDQLLRSLEALEEQYPELRTPDSPTQKVA 73
>gi|20807100|ref|NP_622271.1| NAD-dependent DNA ligase [Thermoanaerobacter tengcongensis MB4]
gi|81482513|sp|Q8RC42|DNLJ_THETN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|20515592|gb|AAM23875.1| NAD-dependent DNA ligase (contains BRCT domain type II)
[Thermoanaerobacter tengcongensis MB4]
Length = 666
Score = 40.4 bits (93), Expect = 0.084, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 32/65 (49%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + EA +E L + +H YY LD P +D YD + L L+E++PE D P
Sbjct: 1 MDREEARKRIEELREKINYHNYRYYVLDQPEISDYEYDMLMRELIELEEKYPEFKTPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SQRVG 65
>gi|312880304|ref|ZP_07740104.1| DNA ligase, NAD-dependent [Aminomonas paucivorans DSM 12260]
gi|310783595|gb|EFQ23993.1| DNA ligase, NAD-dependent [Aminomonas paucivorans DSM 12260]
Length = 696
Score = 40.4 bits (93), Expect = 0.086, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 64 EYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E +I LH + YY LD+P+ D YD + L +L+ P+L D D P VG
Sbjct: 19 ELTEQIRLHDHR-YYVLDDPVLPDDAYDALLRELRSLERAHPDLADPDSPTGRVG 72
>gi|253689765|ref|YP_003018955.1| DNA ligase, NAD-dependent [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251756343|gb|ACT14419.1| DNA ligase, NAD-dependent [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 681
Score = 40.4 bits (93), Expect = 0.086, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 29/58 (50%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ V L ++ HH+ Y+ D P D YD++ + L AL+ PEL D P VG
Sbjct: 13 LRVAELRRVLRHHEYKYHVEDAPEIPDVEYDKLMQELKALEADHPELVTSDSPTQRVG 70
>gi|309812136|ref|ZP_07705894.1| DNA ligase (NAD+) [Dermacoccus sp. Ellin185]
gi|308433823|gb|EFP57697.1| DNA ligase (NAD+) [Dermacoccus sp. Ellin185]
Length = 770
Score = 40.4 bits (93), Expect = 0.086, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HQ YY D P +DG YD + L ++E +PEL + P VG
Sbjct: 39 HQFAYYVKDAPTISDGEYDELLRELQGVEESYPELRSPESPTQRVG 84
>gi|332092973|gb|EGI98039.1| DNA ligase, NAD-dependent [Shigella boydii 3594-74]
Length = 671
Score = 40.4 bits (93), Expect = 0.088, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ + PEL D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELCELETKHPELITPDSPTQRVG 63
>gi|320180401|gb|EFW55332.1| DNA ligase [Shigella boydii ATCC 9905]
Length = 671
Score = 40.4 bits (93), Expect = 0.088, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ + PEL D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELCELETKHPELITPDSPTQRVG 63
>gi|82544871|ref|YP_408818.1| NAD-dependent DNA ligase LigA [Shigella boydii Sb227]
gi|123741957|sp|Q31Y68|DNLJ_SHIBS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|81246282|gb|ABB66990.1| DNA ligase [Shigella boydii Sb227]
Length = 671
Score = 40.4 bits (93), Expect = 0.088, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ + PEL D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELCELETKHPELITPDSPTQRVG 63
>gi|330502846|ref|YP_004379715.1| NAD-dependent DNA ligase LigA [Pseudomonas mendocina NK-01]
gi|328917132|gb|AEB57963.1| NAD-dependent DNA ligase LigA [Pseudomonas mendocina NK-01]
Length = 786
Score = 40.4 bits (93), Expect = 0.088, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 23/46 (50%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY LD P D YDR+ L AL+ + PEL + P VG
Sbjct: 18 HNYRYYVLDEPSVPDAEYDRLFRELQALEAEHPELVTPESPTQRVG 63
>gi|307297347|ref|ZP_07577153.1| DNA ligase, NAD-dependent [Thermotogales bacterium mesG1.Ag.4.2]
gi|306916607|gb|EFN46989.1| DNA ligase, NAD-dependent [Thermotogales bacterium mesG1.Ag.4.2]
Length = 665
Score = 40.4 bits (93), Expect = 0.088, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 31/61 (50%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
EA ++ L K +H YY LD+P D YD + L L+EQ+PEL D P V
Sbjct: 6 EARKRIDELRKEIDYHAYRYYVLDDPEIPDSEYDNLLRTLIDLEEQYPELKTPDSPSIRV 65
Query: 118 G 118
G
Sbjct: 66 G 66
>gi|146307768|ref|YP_001188233.1| NAD-dependent DNA ligase LigA [Pseudomonas mendocina ymp]
gi|190359273|sp|A4XVY5|DNLJ_PSEMY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|145575969|gb|ABP85501.1| DNA ligase, NAD-dependent [Pseudomonas mendocina ymp]
Length = 786
Score = 40.4 bits (93), Expect = 0.088, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 23/46 (50%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY LD P D YDR+ L AL+ + PEL + P VG
Sbjct: 18 HNYRYYVLDEPSVPDAEYDRLFRELQALEAEHPELVTPESPTQRVG 63
>gi|315606212|ref|ZP_07881239.1| DNA ligase [Actinomyces sp. oral taxon 180 str. F0310]
gi|315312100|gb|EFU60190.1| DNA ligase [Actinomyces sp. oral taxon 180 str. F0310]
Length = 777
Score = 40.4 bits (93), Expect = 0.090, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY D+P +D YDR+ L+ ++E++P+L D P +VG
Sbjct: 30 YYDRDSPTISDADYDRMYRELEEIEERYPQLRGADSPTMSVG 71
>gi|145593768|ref|YP_001158065.1| DNA ligase, NAD-dependent [Salinispora tropica CNB-440]
gi|190359283|sp|A4X487|DNLJ_SALTO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|145303105|gb|ABP53687.1| DNA ligase, NAD-dependent [Salinispora tropica CNB-440]
Length = 711
Score = 40.4 bits (93), Expect = 0.090, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 23/46 (50%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HQ YY LD P +D +D L AL+ +FP L D P VG
Sbjct: 40 HQYRYYVLDAPTISDAAFDEQLRELAALEAEFPALRTPDSPTQRVG 85
>gi|32267302|ref|NP_861334.1| NAD-dependent DNA ligase LigA [Helicobacter hepaticus ATCC 51449]
gi|81665265|sp|Q7VF74|DNLJ_HELHP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|32263355|gb|AAP78400.1| DNA ligase [Helicobacter hepaticus ATCC 51449]
Length = 650
Score = 40.4 bits (93), Expect = 0.090, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ E +V+ L K+A H YY LD P+ TD YD + ++ +E+ P L D P
Sbjct: 1 MTSQEYYTQVQILKKMAYH----YYVLDEPIATDEQYDSLYHQIVRFEEENPHLIDASSP 56
Query: 114 WNTVG 118
VG
Sbjct: 57 TQRVG 61
>gi|119774653|ref|YP_927393.1| DNA ligase (NAD(+)) [Shewanella amazonensis SB2B]
gi|166216239|sp|A1S5R7|DNLJ_SHEAM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|119767153|gb|ABL99723.1| DNA ligase (NAD(+)) [Shewanella amazonensis SB2B]
Length = 681
Score = 40.4 bits (93), Expect = 0.091, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E++ L H YY D P D YDR+ +L AL+ ++P+ + D P VG
Sbjct: 17 EIQRLTAEINRHNIAYYVQDAPSIPDAEYDRLMNQLKALEAEYPQFAEPDSPTQRVG 73
>gi|108563021|ref|YP_627337.1| NAD-dependent DNA ligase LigA [Helicobacter pylori HPAG1]
gi|123246990|sp|Q1CTQ9|DNLJ_HELPH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|107836794|gb|ABF84663.1| DNA ligase [Helicobacter pylori HPAG1]
Length = 656
Score = 40.4 bits (93), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
Query: 64 EYLVKIAL-----HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
EYL +IA HH YY LD+P+ +D +YD + + L A +E+ P + P VG
Sbjct: 7 EYLERIAYLNTLSHH---YYNLDDPIVSDAVYDELYQELKAYEEKNPSHIQANSPTQKVG 63
>gi|294054681|ref|YP_003548339.1| DNA ligase, NAD-dependent [Coraliomargarita akajimensis DSM 45221]
gi|293614014|gb|ADE54169.1| DNA ligase, NAD-dependent [Coraliomargarita akajimensis DSM 45221]
Length = 711
Score = 40.4 bits (93), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 24/46 (52%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H + YY+ P D YDR+ RL AL+ Q PEL P TVG
Sbjct: 66 HDRLYYKKAQPEIDDQAYDRLKARLTALESQNPELDFGSSPTQTVG 111
>gi|254510866|ref|ZP_05122933.1| DNA ligase, NAD-dependent [Rhodobacteraceae bacterium KLH11]
gi|221534577|gb|EEE37565.1| DNA ligase, NAD-dependent [Rhodobacteraceae bacterium KLH11]
Length = 750
Score = 40.4 bits (93), Expect = 0.092, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 35/74 (47%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
+ K V L++ +A E+ L L + Y+ D P +DG YD + R ++ +F
Sbjct: 1 MSKTTAVADLTEEDAQQELARLAAELLRANQLYHAEDAPELSDGDYDALKRRNAEIEARF 60
Query: 105 PELFDEDHPWNTVG 118
P+L D P VG
Sbjct: 61 PDLKRTDSPSEQVG 74
>gi|152965283|ref|YP_001361067.1| DNA ligase, NAD-dependent [Kineococcus radiotolerans SRS30216]
gi|190359261|sp|A6W7L4|DNLJ_KINRD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|151359800|gb|ABS02803.1| DNA ligase, NAD-dependent [Kineococcus radiotolerans SRS30216]
Length = 696
Score = 40.4 bits (93), Expect = 0.092, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 76 WYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+Y R +PL +DG YD + L AL+EQ P+L D P TVG
Sbjct: 31 YYVRNSSPL-SDGQYDALERELRALEEQHPQLRTPDSPTQTVG 72
>gi|261345310|ref|ZP_05972954.1| DNA ligase, NAD-dependent [Providencia rustigianii DSM 4541]
gi|282566645|gb|EFB72180.1| DNA ligase, NAD-dependent [Providencia rustigianii DSM 4541]
Length = 678
Score = 40.0 bits (92), Expect = 0.093, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ LD P D YD++ + L L+ + PEL D P VG
Sbjct: 23 HHEYLYHVLDAPEIPDVEYDKLMQELKGLEAENPELITTDSPTQRVG 69
>gi|227328979|ref|ZP_03833003.1| NAD-dependent DNA ligase LigA [Pectobacterium carotovorum subsp.
carotovorum WPP14]
Length = 684
Score = 40.0 bits (92), Expect = 0.094, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
A + V L ++ HH+ Y+ D P D YD++ + L +L+ PEL D P VG
Sbjct: 14 AALRVAELRRVLRHHEYKYHVEDAPEIPDVEYDKLMQELKSLEAAHPELVTSDSPTQRVG 73
>gi|50364975|ref|YP_053400.1| DNA ligase, polydeoxyribonucleotide synthase NAD+ [Mesoplasma
florum L1]
gi|81391966|sp|Q6F1V7|DNLJ_MESFL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|50363531|gb|AAT75516.1| DNA ligase, polydeoxyribonucleotide synthase NAD+ [Mesoplasma
florum L1]
Length = 666
Score = 40.0 bits (92), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 23/44 (52%)
Query: 75 KWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
K YY LDNP D YD+ +L L+ QFPEL D VG
Sbjct: 22 KEYYVLDNPSVDDAEYDKTIHQLLDLENQFPELITSDSITQKVG 65
>gi|166364069|ref|YP_001656342.1| DNA ligase [Microcystis aeruginosa NIES-843]
gi|254781371|sp|B0JTW2|DNLJ_MICAN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|166086442|dbj|BAG01150.1| DNA ligase [Microcystis aeruginosa NIES-843]
Length = 669
Score = 40.0 bits (92), Expect = 0.095, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD+P D +YD++ L+ +++++P+L D P VG
Sbjct: 25 YYVLDDPFIPDSVYDQLYRELEDIEKRYPQLITPDSPTQRVG 66
>gi|153853203|ref|ZP_01994612.1| hypothetical protein DORLON_00597 [Dorea longicatena DSM 13814]
gi|149753989|gb|EDM63920.1| hypothetical protein DORLON_00597 [Dorea longicatena DSM 13814]
Length = 692
Score = 40.0 bits (92), Expect = 0.095, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 52 TSLSKGEAMI--EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
T KG++M ++ LVK ++ YY D PL +D YDR+ ++L L+EQ +
Sbjct: 19 TPQKKGDSMSIKRIKNLVKQLNEYRHAYYNQDAPLVSDAEYDRLFDKLKKLEEQTGFIL- 77
Query: 110 EDHPWNTVGY 119
+ P TVGY
Sbjct: 78 SNSPTQTVGY 87
>gi|110634347|ref|YP_674555.1| DNA ligase, NAD-dependent [Mesorhizobium sp. BNC1]
gi|123162160|sp|Q11GT5|DNLJ_MESSB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|110285331|gb|ABG63390.1| DNA ligase, NAD-dependent [Chelativorans sp. BNC1]
Length = 703
Score = 40.0 bits (92), Expect = 0.095, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 33/68 (48%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V L++ +A E+ L + H + YY D P +D YD + R A+++ FP L
Sbjct: 8 VDELTEEQAKDELARLAQEIGRHDRLYYSEDAPEVSDAEYDALRRRNLAIEQAFPNLIRA 67
Query: 111 DHPWNTVG 118
D P +G
Sbjct: 68 DSPSKRIG 75
>gi|298492390|ref|YP_003722567.1| DNA ligase, NAD-dependent ['Nostoc azollae' 0708]
gi|298234308|gb|ADI65444.1| DNA ligase, NAD-dependent ['Nostoc azollae' 0708]
Length = 684
Score = 40.0 bits (92), Expect = 0.096, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P+ D +YDR+ L L+ Q+P L D P VG
Sbjct: 25 YYVLDAPVMEDMVYDRLYRELQELETQYPYLVTPDSPTQRVG 66
>gi|75906538|ref|YP_320834.1| NAD-dependent DNA ligase LigA [Anabaena variabilis ATCC 29413]
gi|123745307|sp|Q3MGE7|DNLJ_ANAVT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|75700263|gb|ABA19939.1| NAD-dependent DNA ligase [Anabaena variabilis ATCC 29413]
Length = 676
Score = 40.0 bits (92), Expect = 0.098, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 28/56 (50%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
VE L ++ YY LD P+ D +YD++ L L+ Q PEL D P +G
Sbjct: 11 VEELRRLLQQASYAYYVLDAPVMEDAVYDQLYRELQQLEIQHPELVTPDSPTQRIG 66
>gi|194333271|ref|YP_002015131.1| DNA ligase, NAD-dependent [Prosthecochloris aestuarii DSM 271]
gi|254781391|sp|B4S4Y6|DNLJ_PROA2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|194311089|gb|ACF45484.1| DNA ligase, NAD-dependent [Prosthecochloris aestuarii DSM 271]
Length = 675
Score = 40.0 bits (92), Expect = 0.099, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 33/65 (50%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + +A+ E+ L H YY L P +D +D+ ERL AL++ FP+L D P
Sbjct: 1 MQRKDALKEIARLRDELNRHNYRYYVLAQPEISDYAFDQELERLIALEKAFPDLVTPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SQRVG 65
>gi|187477571|ref|YP_785595.1| DNA ligase [Bordetella avium 197N]
gi|123752160|sp|Q2KUU5|DNLJ_BORA1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|115422157|emb|CAJ48681.1| DNA ligase [Bordetella avium 197N]
Length = 695
Score = 40.0 bits (92), Expect = 0.099, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 68 KIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+IA H+ + YY D P TD YD + L AL+ Q PEL D P VG
Sbjct: 18 EIAQHNIR-YYVYDEPSITDADYDALMRELMALEAQHPELVTPDSPTQRVG 67
>gi|33866919|ref|NP_898478.1| NAD-dependent DNA ligase LigA [Synechococcus sp. WH 8102]
gi|81573701|sp|Q7U3P1|DNLJ_SYNPX RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|33639520|emb|CAE08904.1| Putative DNA ligase [Synechococcus sp. WH 8102]
Length = 679
Score = 40.0 bits (92), Expect = 0.099, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E+ L+ A H YY LD P+ D LYDR+ L L++ P L D P VG
Sbjct: 10 ELRSLLNRAAHA---YYVLDAPVMEDTLYDRLYRELQQLEQADPSLLSADSPTQRVG 63
>gi|319655032|ref|ZP_08009103.1| DNA ligase [Bacillus sp. 2_A_57_CT2]
gi|317393299|gb|EFV74066.1| DNA ligase [Bacillus sp. 2_A_57_CT2]
Length = 668
Score = 40.0 bits (92), Expect = 0.10, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
Y+ LD P D YDR+ L L+ QFPEL ED P VG
Sbjct: 24 YHVLDQPSVPDAEYDRLMRDLIELEGQFPELKTEDSPTQRVG 65
>gi|50122504|ref|YP_051671.1| NAD-dependent DNA ligase LigA [Pectobacterium atrosepticum
SCRI1043]
gi|81644069|sp|Q6D165|DNLJ_ERWCT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|49613030|emb|CAG76481.1| DNA ligase [Pectobacterium atrosepticum SCRI1043]
Length = 681
Score = 40.0 bits (92), Expect = 0.10, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 29/58 (50%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ V L ++ HH+ Y+ D P D YD++ + L AL+ PEL D P VG
Sbjct: 6 LRVAELRRVLRHHEYKYHVEDAPEIPDIEYDKLMQELKALEADHPELVTSDSPTQRVG 63
>gi|119961355|ref|YP_947208.1| DNA ligase, NAD-dependent [Arthrobacter aurescens TC1]
gi|166215391|sp|A1R4P6|DNLJ_ARTAT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|119948214|gb|ABM07125.1| DNA ligase, NAD-dependent [Arthrobacter aurescens TC1]
Length = 768
Score = 40.0 bits (92), Expect = 0.10, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 29/57 (50%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E E L + ++ YY+ D+P +D +D + RL+ L+ PEL D P VG
Sbjct: 36 EYEQLADLVRKYRYAYYQEDSPTVSDAEFDELYRRLEELEALHPELVSNDSPTQEVG 92
>gi|226365931|ref|YP_002783714.1| NAD-dependent DNA ligase LigA [Rhodococcus opacus B4]
gi|254781403|sp|C1B1S4|DNLJ_RHOOB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|226244421|dbj|BAH54769.1| NAD(+)-dependent DNA ligase [Rhodococcus opacus B4]
Length = 697
Score = 40.0 bits (92), Expect = 0.10, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HQ YY D P+ +DG +D + L+ L+ Q+P+L D P VG
Sbjct: 29 QHQFRYYVRDAPIISDGEFDALLGELNDLENQYPDLRTPDSPTQLVG 75
>gi|217032016|ref|ZP_03437517.1| hypothetical protein HPB128_187g43 [Helicobacter pylori B128]
gi|216946326|gb|EEC24932.1| hypothetical protein HPB128_187g43 [Helicobacter pylori B128]
Length = 458
Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
Query: 64 EYLVKIAL-----HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
EYL +IA HH YY LD+P+ +D +YD + + L A +E+ P + P VG
Sbjct: 7 EYLERIAYLNTLSHH---YYNLDDPIVSDAVYDELYQELKAYEEKNPNSIQANSPTQKVG 63
>gi|327480472|gb|AEA83782.1| NAD-dependent DNA ligase LigA [Pseudomonas stutzeri DSM 4166]
Length = 791
Score = 40.0 bits (92), Expect = 0.10, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 23/46 (50%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY LD P D YDR+ L AL+ + PEL + P VG
Sbjct: 21 HNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPELVTPESPTQRVG 66
>gi|256822391|ref|YP_003146354.1| NAD-dependent DNA ligase [Kangiella koreensis DSM 16069]
gi|256795930|gb|ACV26586.1| DNA ligase, NAD-dependent [Kangiella koreensis DSM 16069]
Length = 667
Score = 40.0 bits (92), Expect = 0.10, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+HQ YY LD+P D YDR+ L ++ + PEL D P VG
Sbjct: 19 NHQ--YYVLDDPSVPDAEYDRLLRELQQIESEHPELISSDSPTQRVG 63
>gi|166216289|sp|A4VKN0|DNLJ_PSEU5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
Length = 788
Score = 40.0 bits (92), Expect = 0.10, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 23/46 (50%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY LD P D YDR+ L AL+ + PEL + P VG
Sbjct: 21 HNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPELVTPESPTQRVG 66
>gi|146282220|ref|YP_001172373.1| NAD-dependent DNA ligase LigA [Pseudomonas stutzeri A1501]
gi|145570425|gb|ABP79531.1| DNA ligase, NAD-dependent [Pseudomonas stutzeri A1501]
Length = 802
Score = 40.0 bits (92), Expect = 0.10, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 23/46 (50%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY LD P D YDR+ L AL+ + PEL + P VG
Sbjct: 35 HNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPELVTPESPTQRVG 80
>gi|116329958|ref|YP_799676.1| DNA ligase (NAD+) [Leptospira borgpetersenii serovar Hardjo-bovis
JB197]
gi|122282269|sp|Q04W02|DNLJ_LEPBJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|116123647|gb|ABJ74918.1| DNA ligase (NAD+) [Leptospira borgpetersenii serovar Hardjo-bovis
JB197]
Length = 681
Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 45 LDKAKKV--TSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQE 102
+ K KK +LS+ EA + L HHQ YY + P +D +D++ +RL L+E
Sbjct: 1 MSKKKKTYQNTLSEKEAKKVIAKLADEIRHHQYLYYVKNQPEISDFDFDQLFKRLRDLEE 60
Query: 103 QFPELFDEDHPWNTVG 118
+FP+ D + P VG
Sbjct: 61 EFPQFKDLNSPTLVVG 76
>gi|331005395|ref|ZP_08328777.1| DNA ligase [gamma proteobacterium IMCC1989]
gi|330420789|gb|EGG95073.1| DNA ligase [gamma proteobacterium IMCC1989]
Length = 707
Score = 40.0 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 71 LHHQKW-YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+HH + YY LDNP D YDR+ L L+++ P D P VG
Sbjct: 45 IHHYSYQYYALDNPTIPDAEYDRLFLELQTLEKENPSYVTSDSPTQRVG 93
>gi|170746461|ref|YP_001752721.1| DNA ligase, NAD-dependent [Methylobacterium radiotolerans JCM 2831]
gi|254781368|sp|B1M575|DNLJ_METRJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|170652983|gb|ACB22038.1| DNA ligase, NAD-dependent [Methylobacterium radiotolerans JCM 2831]
Length = 810
Score = 40.0 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
L+ EA E L L + YY+ D P +D YDR+ RL+ ++ +FP+L
Sbjct: 13 LTAEEARAEYARLSDAILEADRLYYQEDAPEISDAEYDRLRRRLEDIEARFPDL 66
>gi|116329438|ref|YP_799158.1| DNA ligase [Leptospira borgpetersenii serovar Hardjo-bovis L550]
gi|122282782|sp|Q04XH0|DNLJ_LEPBL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|116122182|gb|ABJ80225.1| DNA ligase (NAD+) (contains BRCT domain type II) [Leptospira
borgpetersenii serovar Hardjo-bovis L550]
Length = 681
Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 45 LDKAKKV--TSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQE 102
+ K KK +LS+ EA + L HHQ YY + P +D +D++ +RL L+E
Sbjct: 1 MSKKKKTYQNTLSEKEAKKVIAKLADEIRHHQYLYYVKNQPEISDFDFDQLFKRLRDLEE 60
Query: 103 QFPELFDEDHPWNTVG 118
+FP+ D + P VG
Sbjct: 61 EFPQFKDLNSPTLVVG 76
>gi|297570387|ref|YP_003691731.1| DNA ligase, NAD-dependent [Desulfurivibrio alkaliphilus AHT2]
gi|296926302|gb|ADH87112.1| DNA ligase, NAD-dependent [Desulfurivibrio alkaliphilus AHT2]
Length = 680
Score = 40.0 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 31/64 (48%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
+K +A V L + +H YY LD+P D YD + L L+E++P L D P
Sbjct: 10 AKEQARQRVAELREQIRYHNHRYYVLDDPEIPDAEYDALFRELQELEERYPGLAGADSPS 69
Query: 115 NTVG 118
VG
Sbjct: 70 RQVG 73
>gi|15645240|ref|NP_207410.1| NAD-dependent DNA ligase LigA [Helicobacter pylori 26695]
gi|3182983|sp|O25336|DNLJ_HELPY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|2313737|gb|AAD07680.1| DNA ligase (lig) [Helicobacter pylori 26695]
Length = 656
Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Query: 64 EYLVKIAL-----HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
EYL +IA HH YY LD P+ +D +YD + + L A +E+ P + P VG
Sbjct: 7 EYLERIAYLNTLSHH---YYNLDEPIVSDAIYDELYQELKAYEEKNPNGIQANSPTQKVG 63
>gi|312882689|ref|ZP_07742426.1| NAD-dependent DNA ligase LigA [Vibrio caribbenthicus ATCC BAA-2122]
gi|309369650|gb|EFP97165.1| NAD-dependent DNA ligase LigA [Vibrio caribbenthicus ATCC BAA-2122]
Length = 670
Score = 40.0 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 29/61 (47%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E ++ +L ++ H YY DNP D YDR+ L L+ Q PEL D P V
Sbjct: 4 EIETKLNHLRQLLHSHGIKYYVEDNPQIPDSEYDRLMRELLELESQHPELVSLDSPTQRV 63
Query: 118 G 118
G
Sbjct: 64 G 64
>gi|217970592|ref|YP_002355826.1| DNA ligase, NAD-dependent [Thauera sp. MZ1T]
gi|217507919|gb|ACK54930.1| DNA ligase, NAD-dependent [Thauera sp. MZ1T]
Length = 693
Score = 40.0 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 22/46 (47%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY LD P D YDR+ L A++ +P L D P VG
Sbjct: 30 HDHAYYVLDAPTIPDAEYDRLFRELQAIERAYPALRSADSPTQRVG 75
>gi|325274411|ref|ZP_08140498.1| NAD-dependent DNA ligase LigA [Pseudomonas sp. TJI-51]
gi|324100446|gb|EGB98205.1| NAD-dependent DNA ligase LigA [Pseudomonas sp. TJI-51]
Length = 776
Score = 40.0 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 22/47 (46%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY LD P D YDR+ L AL+ + P L D P VG
Sbjct: 16 QHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPHLVTPDSPTQRVG 62
>gi|313497885|gb|ADR59251.1| LigA [Pseudomonas putida BIRD-1]
Length = 776
Score = 40.0 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 22/47 (46%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY LD P D YDR+ L AL+ + P L D P VG
Sbjct: 16 QHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPHLVTPDSPTQRVG 62
>gi|218509214|ref|ZP_03507092.1| NAD-dependent DNA ligase LigA [Rhizobium etli Brasil 5]
Length = 202
Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH Y D +D YD + R DAL+ +FPEL ED P VG
Sbjct: 10 HHDALYQGKDQREISDADYDALKRRNDALEVRFPELIREDSPSRHVG 56
>gi|148546832|ref|YP_001266934.1| NAD-dependent DNA ligase LigA [Pseudomonas putida F1]
gi|190359274|sp|A5W0U0|DNLJ_PSEP1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|148510890|gb|ABQ77750.1| DNA ligase, NAD-dependent [Pseudomonas putida F1]
Length = 776
Score = 40.0 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 22/47 (46%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY LD P D YDR+ L AL+ + P L D P VG
Sbjct: 16 QHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPHLVTPDSPTQRVG 62
>gi|167034833|ref|YP_001670064.1| NAD-dependent DNA ligase LigA [Pseudomonas putida GB-1]
gi|190359275|sp|B0KPX3|DNLJ_PSEPG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|166861321|gb|ABY99728.1| DNA ligase, NAD-dependent [Pseudomonas putida GB-1]
Length = 776
Score = 40.0 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 22/47 (46%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY LD P D YDR+ L AL+ + P L D P VG
Sbjct: 16 QHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPHLVTPDSPTQRVG 62
>gi|170722763|ref|YP_001750451.1| NAD-dependent DNA ligase LigA [Pseudomonas putida W619]
gi|254781396|sp|B1JC06|DNLJ_PSEPW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|169760766|gb|ACA74082.1| DNA ligase, NAD-dependent [Pseudomonas putida W619]
Length = 776
Score = 40.0 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 22/47 (46%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY LD P D YDR+ L AL+ + P L D P VG
Sbjct: 16 QHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPHLVTPDSPTQRVG 62
>gi|26990965|ref|NP_746390.1| NAD-dependent DNA ligase LigA [Pseudomonas putida KT2440]
gi|81439923|sp|Q88F25|DNLJ_PSEPK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|24985989|gb|AAN69854.1|AE016624_5 DNA ligase, NAD-dependent [Pseudomonas putida KT2440]
Length = 776
Score = 40.0 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 22/47 (46%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY LD P D YDR+ L AL+ + P L D P VG
Sbjct: 16 QHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPHLVTPDSPTQRVG 62
>gi|257125939|ref|YP_003164053.1| DNA ligase, NAD-dependent [Leptotrichia buccalis C-1013-b]
gi|257049878|gb|ACV39062.1| DNA ligase, NAD-dependent [Leptotrichia buccalis C-1013-b]
Length = 706
Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD--EDHPWNTVG 118
+H YY DNP+ +D YD + L L++++PEL + E+ P +G
Sbjct: 39 YHNNLYYNEDNPIISDMEYDALMRELKQLEQEYPELLENSENSPTKKIG 87
>gi|21231024|ref|NP_636941.1| NAD-dependent DNA ligase LigA [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66768971|ref|YP_243733.1| NAD-dependent DNA ligase LigA [Xanthomonas campestris pv.
campestris str. 8004]
gi|188992085|ref|YP_001904095.1| NAD-dependent DNA ligase LigA [Xanthomonas campestris pv.
campestris str. B100]
gi|81305065|sp|Q4UTB0|DNLJ_XANC8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|81794799|sp|Q8PAB5|DNLJ_XANCP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254782312|sp|B0RUY2|DNLJ_XANCB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|21112648|gb|AAM40865.1| DNA ligase [Xanthomonas campestris pv. campestris str. ATCC 33913]
gi|66574303|gb|AAY49713.1| DNA ligase [Xanthomonas campestris pv. campestris str. 8004]
gi|167733845|emb|CAP52051.1| DNA ligase (NAD(+)) [Xanthomonas campestris pv. campestris]
Length = 833
Score = 40.0 bits (92), Expect = 0.12, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 23/43 (53%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
Y+ LD P D YDR+ L+AL+ PEL D P VGY
Sbjct: 25 YHVLDEPQIADVEYDRLLRELEALEAAHPELATADSPTQRVGY 67
>gi|86605509|ref|YP_474272.1| DNA ligase, NAD-dependent [Synechococcus sp. JA-3-3Ab]
gi|123765626|sp|Q2JW63|DNLJ_SYNJA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|86554051|gb|ABC99009.1| DNA ligase, NAD-dependent [Synechococcus sp. JA-3-3Ab]
Length = 673
Score = 40.0 bits (92), Expect = 0.12, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY D P+ D +YDR+ L L+ +PEL D P VG
Sbjct: 23 YYVHDAPILEDSVYDRLYRELQELERAYPELITPDSPTQRVG 64
>gi|120602092|ref|YP_966492.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris DP4]
gi|166215378|sp|A1VC99|DNLJ1_DESVV RecName: Full=DNA ligase 1; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] 1
gi|120562321|gb|ABM28065.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris DP4]
Length = 680
Score = 40.0 bits (92), Expect = 0.12, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 23/46 (50%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H + YY LD P +D YD + L L+ +P L DE P VG
Sbjct: 21 HNRLYYELDTPEISDAEYDTLYRELVNLETLWPALMDEASPTQRVG 66
>gi|307609752|emb|CBW99264.1| DNA ligase [Legionella pneumophila 130b]
Length = 650
Score = 40.0 bits (92), Expect = 0.12, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
YY LD PL D YDR + L +EQ+P+ D P V
Sbjct: 24 YYVLDEPLVPDAEYDRCFKALQQYEEQYPQFLSPDSPTQRV 64
>gi|289663144|ref|ZP_06484725.1| NAD-dependent DNA ligase LigA [Xanthomonas campestris pv.
vasculorum NCPPB702]
Length = 833
Score = 40.0 bits (92), Expect = 0.12, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
Y+ LD P D YDR+ L+AL+ ++P+L D P VG+
Sbjct: 25 YHVLDEPQMADVDYDRLMRELEALEAEYPQLASADSPTQRVGH 67
>gi|254430924|ref|ZP_05044627.1| DNA ligase, NAD-dependent [Cyanobium sp. PCC 7001]
gi|197625377|gb|EDY37936.1| DNA ligase, NAD-dependent [Cyanobium sp. PCC 7001]
Length = 667
Score = 39.7 bits (91), Expect = 0.12, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E++ L+ A H YY LD P+ D +YDR+ L L++ PEL D P VG
Sbjct: 14 ELQRLLTQAAHA---YYVLDAPVMEDPVYDRLYRELLELEQAHPELIRPDSPTQRVG 67
>gi|220931078|ref|YP_002507986.1| DNA ligase, NAD-dependent [Halothermothrix orenii H 168]
gi|254781343|sp|B8D122|DNLJ_HALOH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|219992388|gb|ACL68991.1| DNA ligase, NAD-dependent [Halothermothrix orenii H 168]
Length = 670
Score = 39.7 bits (91), Expect = 0.12, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 31/57 (54%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E+ L + +H+ YY LD+P +D +D + +RL L+E+ P L D P VG
Sbjct: 8 EIRDLREKIRYHEYRYYVLDDPEISDAEFDELIQRLIDLEEKHPGLVTPDSPTQRVG 64
>gi|332141273|ref|YP_004427011.1| NAD-dependent DNA ligase [Alteromonas macleodii str. 'Deep
ecotype']
gi|327551295|gb|AEA98013.1| NAD-dependent DNA ligase [Alteromonas macleodii str. 'Deep
ecotype']
Length = 171
Score = 39.7 bits (91), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD+P D +YDR + L AL++Q+P L + P VG
Sbjct: 26 YYVLDDPSIPDAVYDRDMQSLIALEKQYPSLQSPNSPSQKVG 67
>gi|150021387|ref|YP_001306741.1| DNA ligase, NAD-dependent [Thermosipho melanesiensis BI429]
gi|190359297|sp|A6LN55|DNLJ_THEM4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|149793908|gb|ABR31356.1| DNA ligase, NAD-dependent [Thermosipho melanesiensis BI429]
Length = 662
Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 33/57 (57%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E+E L K +H YY L +P+ +D YDR+ ++L L++++P+ + P VG
Sbjct: 7 EIERLRKEIEYHNYRYYVLADPIISDEEYDRLLKKLIELEKKYPKFSSPNSPTQKVG 63
>gi|78185772|ref|YP_378206.1| NAD-dependent DNA ligase LigA [Synechococcus sp. CC9902]
gi|123743489|sp|Q3AUH7|DNLJ_SYNS9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|78170066|gb|ABB27163.1| DNA ligase (NAD+) [Synechococcus sp. CC9902]
Length = 680
Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
+ E E+ L+ A H YY LD P D +YDR+ + L L++ P L D P
Sbjct: 4 QSERATELRNLLNTAAHA---YYVLDTPTMEDAVYDRLYQELLELEQNTPSLKTADSPTQ 60
Query: 116 TVG 118
VG
Sbjct: 61 RVG 63
>gi|114319842|ref|YP_741525.1| DNA ligase, NAD-dependent [Alkalilimnicola ehrlichii MLHE-1]
gi|122312282|sp|Q0AAV2|DNLJ_ALHEH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|114226236|gb|ABI56035.1| DNA ligase, NAD-dependent [Alkalilimnicola ehrlichii MLHE-1]
Length = 673
Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 26/56 (46%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+E L + H YY LD P+ D YD + L AL+ + PEL D P V
Sbjct: 12 IEALRREIREHDHRYYVLDAPVIADAEYDALMAELQALEAEHPELITPDSPSQRVA 67
>gi|17546117|ref|NP_519519.1| DNA ligase (polydeoxyribonucleotide synthase [NAD+]) protein
[Ralstonia solanacearum GMI1000]
gi|81505313|sp|Q8XZJ7|DNLJ_RALSO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|17428413|emb|CAD15100.1| putative dna ligase (polydeoxyribonucleotide synthase [nad+])
protein [Ralstonia solanacearum GMI1000]
Length = 813
Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ L+AL+ + PEL D P VG
Sbjct: 31 YYVLDQPSVPDAEYDRLYRELEALEAEHPELRTPDSPTLRVG 72
>gi|323697702|ref|ZP_08109614.1| DNA ligase, NAD-dependent [Desulfovibrio sp. ND132]
gi|323457634|gb|EGB13499.1| DNA ligase, NAD-dependent [Desulfovibrio desulfuricans ND132]
Length = 684
Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH YY LD+P +D +D + L AL+ + PEL D + P VG
Sbjct: 19 HHNYRYYVLDDPEISDQEFDVLFRELAALEAEHPELDDPNSPTRRVG 65
>gi|46143448|ref|ZP_00135242.2| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II)
[Actinobacillus pleuropneumoniae serovar 1 str. 4074]
gi|126208768|ref|YP_001053993.1| NAD-dependent DNA ligase LigA [Actinobacillus pleuropneumoniae L20]
gi|166215385|sp|A3N1V2|DNLJ_ACTP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|126097560|gb|ABN74388.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 5b str. L20]
Length = 683
Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 29/57 (50%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++E L + ++ Y+ LDNPL D YDR+ L L+ Q PE D P VG
Sbjct: 18 QLEALRQKLREYEYHYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITVDSPTQRVG 74
>gi|119512036|ref|ZP_01631131.1| DNA ligase [Nodularia spumigena CCY9414]
gi|119463326|gb|EAW44268.1| DNA ligase [Nodularia spumigena CCY9414]
Length = 678
Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 28/56 (50%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
VE L ++ YY LD P+ D +YD++ L L+ ++PE D P VG
Sbjct: 11 VEELRQLLQQASYAYYVLDAPMMEDAVYDQLYRELQELEIKYPEFITPDSPTQRVG 66
>gi|54293931|ref|YP_126346.1| DNA ligase [Legionella pneumophila str. Lens]
gi|81368949|sp|Q5WXV3|DNLJ_LEGPL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|53753763|emb|CAH15221.1| DNA ligase [Legionella pneumophila str. Lens]
Length = 673
Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
YY LD PL D YDR + L +EQ+P+ D P V
Sbjct: 24 YYVLDEPLVPDAEYDRCFKALQQYEEQYPQFLSPDSPTQRV 64
>gi|329297490|ref|ZP_08254826.1| NAD-dependent DNA ligase LigA [Plautia stali symbiont]
Length = 672
Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ P+L D P VG
Sbjct: 17 HHEYLYHVMDTPEIPDAEYDRLMRELRELESAHPDLITPDSPTQRVG 63
>gi|108759370|ref|YP_633776.1| NAD-dependent DNA ligase [Myxococcus xanthus DK 1622]
gi|123074067|sp|Q1D0P7|DNLJ_MYXXD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|108463250|gb|ABF88435.1| DNA ligase, NAD-dependent [Myxococcus xanthus DK 1622]
Length = 672
Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH YY LD+P +D YD++ L L+ + P L D P VG
Sbjct: 20 HHNYRYYVLDSPEVSDAQYDKLMRELQDLEAKHPSLQTPDSPTQRVG 66
>gi|67920947|ref|ZP_00514466.1| NAD-dependent DNA ligase [Crocosphaera watsonii WH 8501]
gi|67857064|gb|EAM52304.1| NAD-dependent DNA ligase [Crocosphaera watsonii WH 8501]
Length = 670
Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LDNP+ D +YD++ LD L+++ L D P VG
Sbjct: 20 YYVLDNPIMEDAVYDQLYRELDTLEKENTHLITSDSPTQRVG 61
>gi|331663971|ref|ZP_08364881.1| DNA ligase, NAD-dependent [Escherichia coli TA143]
gi|331059770|gb|EGI31747.1| DNA ligase, NAD-dependent [Escherichia coli TA143]
Length = 671
Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ + PEL D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDVEYDRLMRELRELETKHPELITPDSPTQRVG 63
>gi|300897228|ref|ZP_07115672.1| DNA ligase, NAD-dependent [Escherichia coli MS 198-1]
gi|300358986|gb|EFJ74856.1| DNA ligase, NAD-dependent [Escherichia coli MS 198-1]
Length = 671
Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ + PEL D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDVEYDRLMRELRELETKHPELITPDSPTQRVG 63
>gi|218705919|ref|YP_002413438.1| NAD-dependent DNA ligase LigA [Escherichia coli UMN026]
gi|293405854|ref|ZP_06649846.1| DNA ligase [Escherichia coli FVEC1412]
gi|298381604|ref|ZP_06991203.1| DNA ligase [Escherichia coli FVEC1302]
gi|254781326|sp|B7N602|DNLJ_ECOLU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|218433016|emb|CAR13911.1| DNA ligase, NAD(+)-dependent [Escherichia coli UMN026]
gi|284922366|emb|CBG35453.1| DNA ligase [Escherichia coli 042]
gi|291428062|gb|EFF01089.1| DNA ligase [Escherichia coli FVEC1412]
gi|298279046|gb|EFI20560.1| DNA ligase [Escherichia coli FVEC1302]
Length = 671
Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ + PEL D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDVEYDRLMRELRELETKHPELITPDSPTQRVG 63
>gi|166215832|sp|Q5ZWX6|DNLJ_LEGPH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
Length = 673
Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
YY LD PL D YDR + L +EQ+P+ D P V
Sbjct: 24 YYVLDEPLVPDAEYDRCFKALQQYEEQYPQFLSPDSPTQRV 64
>gi|148360390|ref|YP_001251597.1| DNA ligase [Legionella pneumophila str. Corby]
gi|166215817|sp|A5IFV1|DNLJ_LEGPC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|148282163|gb|ABQ56251.1| DNA ligase [Legionella pneumophila str. Corby]
Length = 673
Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
YY LD PL D YDR + L +EQ+P+ D P V
Sbjct: 24 YYVLDEPLVPDAEYDRCFKALQQYEEQYPQFLSPDSPTQRV 64
>gi|54296979|ref|YP_123348.1| DNA ligase [Legionella pneumophila str. Paris]
gi|81370862|sp|Q5X6E6|DNLJ_LEGPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|53750764|emb|CAH12171.1| DNA ligase [Legionella pneumophila str. Paris]
Length = 673
Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
YY LD PL D YDR + L +EQ+P+ D P V
Sbjct: 24 YYVLDEPLVPDAEYDRCFKALQQYEEQYPQFLSPDSPTQRV 64
>gi|296106543|ref|YP_003618243.1| DNA ligase (NAD ) [Legionella pneumophila 2300/99 Alcoy]
gi|295648444|gb|ADG24291.1| DNA ligase (NAD ) [Legionella pneumophila 2300/99 Alcoy]
Length = 673
Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
YY LD PL D YDR + L +EQ+P+ D P V
Sbjct: 24 YYVLDEPLVPDAEYDRCFKALQQYEEQYPQFLSPDSPTQRV 64
>gi|269792727|ref|YP_003317631.1| DNA ligase, NAD-dependent [Thermanaerovibrio acidaminovorans DSM
6589]
gi|269100362|gb|ACZ19349.1| DNA ligase, NAD-dependent [Thermanaerovibrio acidaminovorans DSM
6589]
Length = 673
Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + A +E L ++ HH + YY+ ++P TD YD + L L+ FP+L D P
Sbjct: 1 MDRSAARSRMEELAELIRHHDRLYYQENSPEITDQEYDALFRELVDLERSFPDLRLPDSP 60
>gi|226941791|ref|YP_002796865.1| DnlJ [Laribacter hongkongensis HLHK9]
gi|254781355|sp|C1D4R5|DNLJ_LARHH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|226716718|gb|ACO75856.1| DnlJ [Laribacter hongkongensis HLHK9]
Length = 692
Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 22/42 (52%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ L+AL+ PEL D P VG
Sbjct: 24 YYVLDAPSVPDAEYDRLFRELEALEAAHPELASADSPTRRVG 65
>gi|119503165|ref|ZP_01625249.1| DNA ligase (NAD+) [marine gamma proteobacterium HTCC2080]
gi|119460811|gb|EAW41902.1| DNA ligase (NAD+) [marine gamma proteobacterium HTCC2080]
Length = 673
Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 22/42 (52%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YYR D P +D YDR L L+++FP L D P VG
Sbjct: 24 YYRNDAPTVSDSEYDRTLLALRELEQKFPHLVSADSPTQRVG 65
>gi|86608809|ref|YP_477571.1| DNA ligase, NAD-dependent [Synechococcus sp. JA-2-3B'a(2-13)]
gi|123724461|sp|Q2JLU3|DNLJ_SYNJB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|86557351|gb|ABD02308.1| DNA ligase, NAD-dependent [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 686
Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY D P+ D +YDR+ L L+ +PEL D P VG
Sbjct: 23 YYVHDAPILEDSVYDRLYRELQELERAYPELVTPDSPTQRVG 64
>gi|199597353|ref|ZP_03210784.1| NAD-dependent DNA ligase [Lactobacillus rhamnosus HN001]
gi|199591869|gb|EDY99944.1| NAD-dependent DNA ligase [Lactobacillus rhamnosus HN001]
Length = 674
Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 31/71 (43%)
Query: 48 AKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
+K + EA EV L K + YY D P TD +YD L AL+ FP+L
Sbjct: 3 SKPAAQFTLEEAEAEVAKLRKQLNQWRLEYYTKDAPTVTDNVYDDHYRDLQALEAAFPKL 62
Query: 108 FDEDHPWNTVG 118
D P VG
Sbjct: 63 VTPDSPTQQVG 73
>gi|257054924|ref|YP_003132756.1| NAD-dependent DNA ligase LigA [Saccharomonospora viridis DSM 43017]
gi|256584796|gb|ACU95929.1| DNA ligase, NAD-dependent [Saccharomonospora viridis DSM 43017]
Length = 731
Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HQ YY LD P +D +D++ L+ L+ + P L D P TVG
Sbjct: 60 HQFRYYVLDAPTISDAEFDQLMRDLERLEAEHPALVSPDSPTQTVG 105
>gi|313201136|ref|YP_004039794.1| DNA ligase, nad-dependent [Methylovorus sp. MP688]
gi|312440452|gb|ADQ84558.1| DNA ligase, NAD-dependent [Methylovorus sp. MP688]
Length = 689
Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 22/42 (52%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD+P D YD++ L AL+ PEL D P VG
Sbjct: 32 YYVLDDPSVPDSEYDKLFRELQALEHAHPELLTPDSPTQRVG 73
>gi|303252067|ref|ZP_07338236.1| truncated NAD-dependent DNA ligase LigA [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|302649049|gb|EFL79236.1| truncated NAD-dependent DNA ligase LigA [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
Length = 451
Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
G ++E L + ++ +Y+ LDNPL D YDR+ L L+ Q PE D P
Sbjct: 12 GTTFAQLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITADSPTQR 71
Query: 117 VG 118
VG
Sbjct: 72 VG 73
>gi|284042834|ref|YP_003393174.1| DNA ligase, NAD-dependent [Conexibacter woesei DSM 14684]
gi|283947055|gb|ADB49799.1| DNA ligase, NAD-dependent [Conexibacter woesei DSM 14684]
Length = 684
Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+H YY LD+P D YD + + L AL+ PEL D P VG
Sbjct: 19 YHGHRYYDLDDPEIGDDAYDALLDELRALEAAHPELLTPDSPTQRVG 65
>gi|86157121|ref|YP_463906.1| DNA ligase, NAD-dependent [Anaeromyxobacter dehalogenans 2CP-C]
gi|123723230|sp|Q2INT9|DNLJ_ANADE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|85773632|gb|ABC80469.1| DNA ligase, NAD-dependent [Anaeromyxobacter dehalogenans 2CP-C]
Length = 687
Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
YY LD P+ D YDR+ L A++ + PEL D P V
Sbjct: 24 YYVLDQPVLADAEYDRLMHELQAIEAEHPELVTADSPTQRV 64
>gi|327475239|gb|AEA77214.1| DNA ligase [Bacillus sp. 15.4]
Length = 668
Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
Y+ LD P D YDRV L A++ +FPEL D P VG
Sbjct: 24 YHVLDKPSVPDAEYDRVMNELIAIENKFPELRTADSPTQRVG 65
>gi|212638096|ref|YP_002314616.1| NAD-dependent DNA ligase LigA [Anoxybacillus flavithermus WK1]
gi|254781544|sp|B7GFV1|DNLJ_ANOFW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|212559576|gb|ACJ32631.1| NAD-dependent DNA ligase [Anoxybacillus flavithermus WK1]
Length = 672
Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY LD P +D YD + +L L+EQ+P+ D P VG
Sbjct: 23 HNYAYYVLDQPSISDAEYDELMRKLMELEEQYPQYKTPDSPSQRVG 68
>gi|52841193|ref|YP_094992.1| DNA ligase [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
gi|52628304|gb|AAU27045.1| DNA ligase [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
Length = 683
Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
YY LD PL D YDR + L +EQ+P+ D P V
Sbjct: 34 YYVLDEPLVPDAEYDRCFKALQQYEEQYPQFLSPDSPTQRV 74
>gi|212634787|ref|YP_002311312.1| NAD-dependent DNA ligase [Shewanella piezotolerans WP3]
gi|254781417|sp|B8CN91|DNLJ_SHEPW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|212556271|gb|ACJ28725.1| NAD-dependent DNA ligase [Shewanella piezotolerans WP3]
Length = 668
Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 23/46 (50%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY DNP D YDR+ +RL L+ Q PE D P VG
Sbjct: 18 HNYHYYVDDNPTIPDVEYDRLLKRLIELETQSPEFAKADSPTQRVG 63
>gi|159036755|ref|YP_001536008.1| DNA ligase, NAD-dependent [Salinispora arenicola CNS-205]
gi|190359280|sp|A8M5E3|DNLJ_SALAI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|157915590|gb|ABV97017.1| DNA ligase, NAD-dependent [Salinispora arenicola CNS-205]
Length = 710
Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 23/46 (50%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HQ YY LD P +D +D L AL+ +FP L D P VG
Sbjct: 39 HQYRYYVLDAPTISDAEFDERLRELAALEAEFPALRTPDSPTQRVG 84
>gi|119898292|ref|YP_933505.1| DNA ligase (NAD+) [Azoarcus sp. BH72]
gi|166215393|sp|A1K713|DNLJ_AZOSB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|119670705|emb|CAL94618.1| DNA ligase (NAD+) [Azoarcus sp. BH72]
Length = 693
Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 21/46 (45%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY LD P D YDR+ L ++ PEL D P VG
Sbjct: 21 HNHAYYVLDTPTIPDAEYDRLFRELQDIEAAHPELLTPDSPTQRVG 66
>gi|111023430|ref|YP_706402.1| NAD-dependent DNA ligase LigA [Rhodococcus jostii RHA1]
gi|123045472|sp|Q0S2J2|DNLJ_RHOSR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|110822960|gb|ABG98244.1| DNA ligase (NAD+) [Rhodococcus jostii RHA1]
Length = 696
Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HQ YY D P+ +DG +D + L+ L+ Q+P+L D P VG
Sbjct: 28 QHQFRYYVRDAPIISDGEFDVLLGELNDLENQYPDLRTPDSPTQLVG 74
>gi|238020272|ref|ZP_04600698.1| hypothetical protein GCWU000324_00147 [Kingella oralis ATCC 51147]
gi|237868666|gb|EEP69670.1| hypothetical protein GCWU000324_00147 [Kingella oralis ATCC 51147]
Length = 797
Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ L+AL+ ++P+ + P N VG
Sbjct: 41 YYTLDAPTVPDSEYDRLYRELEALETEYPQFRLPESPTNRVG 82
>gi|319638552|ref|ZP_07993314.1| DNA ligase [Neisseria mucosa C102]
gi|317400301|gb|EFV80960.1| DNA ligase [Neisseria mucosa C102]
Length = 822
Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 28/56 (50%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++YL + + YY LD P D YD++ L+AL+ PEL D P VG
Sbjct: 8 IKYLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALERNHPELKLPDSPTQRVG 63
>gi|226945096|ref|YP_002800169.1| NAD-dependent DNA ligase LigA [Azotobacter vinelandii DJ]
gi|254781546|sp|C1DN27|DNLJ_AZOVD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|226720023|gb|ACO79194.1| DNA ligase, NAD-dependent [Azotobacter vinelandii DJ]
Length = 784
Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 23/46 (50%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY LD P D YDR+ L AL+ + PEL + P VG
Sbjct: 21 HNYRYYVLDAPSVPDAEYDRLFNELKALEAEHPELVTPESPTQRVG 66
>gi|320540519|ref|ZP_08040169.1| DNA ligase, NAD(+)-dependent [Serratia symbiotica str. Tucson]
gi|320029450|gb|EFW11479.1| DNA ligase, NAD(+)-dependent [Serratia symbiotica str. Tucson]
Length = 685
Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 23/47 (48%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ LD P D YDR+ L L+ PEL D P VG
Sbjct: 17 HHEYQYHVLDAPEVPDAEYDRLMCELRELESAHPELITADSPTQRVG 63
>gi|311694426|gb|ADP97299.1| NAD-dependent DNA ligase [marine bacterium HP15]
Length = 678
Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 26/56 (46%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
VE L H YY LD+P D YDR+ L L+ +PEL + P VG
Sbjct: 12 VEELRSAIDDHNYRYYVLDDPRVPDAEYDRLFRELQGLETDYPELASDTSPTRRVG 67
>gi|288941063|ref|YP_003443303.1| DNA ligase, NAD-dependent [Allochromatium vinosum DSM 180]
gi|288896435|gb|ADC62271.1| DNA ligase, NAD-dependent [Allochromatium vinosum DSM 180]
Length = 696
Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+H YY LD+P D YDR+ L L+ + P L D P VG
Sbjct: 19 YHNHRYYVLDDPEIPDAEYDRLFAELQQLEAEHPALITPDSPTQRVG 65
>gi|157961514|ref|YP_001501548.1| DNA ligase, NAD-dependent [Shewanella pealeana ATCC 700345]
gi|190359287|sp|A8H376|DNLJ_SHEPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|157846514|gb|ABV87013.1| DNA ligase, NAD-dependent [Shewanella pealeana ATCC 700345]
Length = 668
Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 26/57 (45%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E+ L H YY D+P D YDR+ RL AL+ + PE D P VG
Sbjct: 7 EIAQLTAELNQHNYRYYVDDSPSIPDAEYDRLLNRLKALETEHPEFCRPDSPTQRVG 63
>gi|225013054|ref|ZP_03703469.1| DNA ligase (NAD(+)) [Flavobacteria bacterium MS024-2A]
gi|225002782|gb|EEG40763.1| DNA ligase (NAD(+)) [Flavobacteria bacterium MS024-2A]
Length = 183
Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 35/57 (61%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++E L ++ H YY LD+P+ +D +D++ ++L+ L+ Q P+L D + P VG
Sbjct: 7 KIEALREVLHDHNHRYYILDDPIISDYEFDQLLQQLNELEVQNPDLTDLNSPTRRVG 63
>gi|312144161|ref|YP_003995607.1| DNA ligase, NAD-dependent [Halanaerobium sp. 'sapolanicus']
gi|311904812|gb|ADQ15253.1| DNA ligase, NAD-dependent [Halanaerobium sp. 'sapolanicus']
Length = 670
Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
Y+ LD+P +D +D++ + L L+ QFPEL D P VG
Sbjct: 27 YFVLDDPQISDAEFDKLMQDLLKLESQFPELVTADSPTQRVG 68
>gi|332755050|gb|EGJ85415.1| DNA ligase domain protein [Shigella flexneri 4343-70]
Length = 256
Score = 39.7 bits (91), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%)
Query: 71 LHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ + PEL D P VG
Sbjct: 16 CHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVG 63
>gi|149183793|ref|ZP_01862194.1| NAD-dependent DNA ligase LigA [Bacillus sp. SG-1]
gi|148848496|gb|EDL62745.1| NAD-dependent DNA ligase LigA [Bacillus sp. SG-1]
Length = 668
Score = 39.7 bits (91), Expect = 0.16, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
Y+ LD P D YDRV L A++ +FPEL D P VG
Sbjct: 24 YHVLDKPSVPDAEYDRVMNELIAIETEFPELRTPDSPTQRVG 65
>gi|15965917|ref|NP_386270.1| NAD-dependent DNA ligase LigA [Sinorhizobium meliloti 1021]
gi|307308227|ref|ZP_07587936.1| DNA ligase, NAD-dependent [Sinorhizobium meliloti BL225C]
gi|307319694|ref|ZP_07599119.1| DNA ligase, NAD-dependent [Sinorhizobium meliloti AK83]
gi|81634276|sp|Q92NM8|DNLJ_RHIME RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|15075186|emb|CAC46743.1| Probable DNA ligase [Sinorhizobium meliloti 1021]
gi|306894625|gb|EFN25386.1| DNA ligase, NAD-dependent [Sinorhizobium meliloti AK83]
gi|306901225|gb|EFN31831.1| DNA ligase, NAD-dependent [Sinorhizobium meliloti BL225C]
Length = 717
Score = 39.7 bits (91), Expect = 0.16, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 38/74 (51%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
L++ K V L++ EA E+ +L H Y+ D P +D YD + R D ++E+F
Sbjct: 2 LNQRKSVEQLNEAEAAEELAFLAAELARHDMLYHGKDAPEISDADYDALKRRNDLIEERF 61
Query: 105 PELFDEDHPWNTVG 118
P L ED P VG
Sbjct: 62 PVLVREDSPSRKVG 75
>gi|323143662|ref|ZP_08078336.1| DNA ligase (NAD+) [Succinatimonas hippei YIT 12066]
gi|322416595|gb|EFY07255.1| DNA ligase (NAD+) [Succinatimonas hippei YIT 12066]
Length = 696
Score = 39.3 bits (90), Expect = 0.16, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV + + K YY D+P+ TD YDR+ +L+ +++ P + D P VG
Sbjct: 11 LVALLNRYAKAYYVDDDPIVTDSEYDRLYRQLEIMEQADPTIISPDSPTRRVG 63
>gi|320334549|ref|YP_004171260.1| DNA ligase [Deinococcus maricopensis DSM 21211]
gi|319755838|gb|ADV67595.1| DNA ligase [Deinococcus maricopensis DSM 21211]
Length = 671
Score = 39.3 bits (90), Expect = 0.16, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 60 MIEVEY--LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
M E Y L++ HH + YY D P +D YD + L A + PE + P V
Sbjct: 1 MTEARYRELIQTIQHHNRLYYEQDTPEISDAEYDALMRELRAAEAAHPEWITPESPTQKV 60
Query: 118 G 118
G
Sbjct: 61 G 61
>gi|170739961|ref|YP_001768616.1| DNA ligase, NAD-dependent [Methylobacterium sp. 4-46]
gi|254781369|sp|B0UQ51|DNLJ_METS4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|168194235|gb|ACA16182.1| DNA ligase, NAD-dependent [Methylobacterium sp. 4-46]
Length = 827
Score = 39.3 bits (90), Expect = 0.16, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
H + Y+ D P+ +D YD + RL+A++E+FP+L
Sbjct: 31 HDRRYHGEDAPIISDAAYDSLRRRLEAIEERFPDL 65
>gi|299535244|ref|ZP_07048568.1| DNA ligase [Lysinibacillus fusiformis ZC1]
gi|298729365|gb|EFI69916.1| DNA ligase [Lysinibacillus fusiformis ZC1]
Length = 667
Score = 39.3 bits (90), Expect = 0.16, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P+ D +YD++ + L AL+E P L D P VG
Sbjct: 22 YYVLDKPVVADSVYDQLLQELIALEEANPSLIYPDSPTQRVG 63
>gi|311898479|dbj|BAJ30887.1| putative DNA ligase [Kitasatospora setae KM-6054]
Length = 788
Score = 39.3 bits (90), Expect = 0.16, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 8/78 (10%)
Query: 41 LESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDAL 100
+E W D +V + E E+E H+ YY D P+ TD +D + L+AL
Sbjct: 1 MEGWEDVPAEVRT-RHAELATEIE-------EHRSRYYEQDAPVVTDAEFDALMRELEAL 52
Query: 101 QEQFPELFDEDHPWNTVG 118
+ P L D P VG
Sbjct: 53 EAAHPALATPDSPTRKVG 70
>gi|332299534|ref|YP_004441455.1| DNA ligase [Porphyromonas asaccharolytica DSM 20707]
gi|332176597|gb|AEE12287.1| DNA ligase [Porphyromonas asaccharolytica DSM 20707]
Length = 679
Score = 39.3 bits (90), Expect = 0.16, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 32/65 (49%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+++ +E+E L H + YY + P +D YD + +RL L+ + PEL D P
Sbjct: 1 MTRNNTELEIEQLRTTIEQHNRAYYLDNAPTISDADYDALMQRLLTLEAEHPELADPTSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SLRVG 65
>gi|313886637|ref|ZP_07820349.1| DNA ligase (NAD+) [Porphyromonas asaccharolytica PR426713P-I]
gi|312923933|gb|EFR34730.1| DNA ligase (NAD+) [Porphyromonas asaccharolytica PR426713P-I]
Length = 679
Score = 39.3 bits (90), Expect = 0.17, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 32/65 (49%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+++ +E+E L H + YY + P +D YD + +RL L+ + PEL D P
Sbjct: 1 MTRNNTELEIEQLRTTIEQHNRAYYLDNAPTISDADYDALMQRLLTLEAEHPELADPTSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SLRVG 65
>gi|1816524|gb|AAB42062.1| DNA ligase [Escherichia coli]
Length = 90
Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ + PEL D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVG 63
>gi|195940543|ref|ZP_03085925.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str.
EC4024]
Length = 98
Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ + PEL D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVG 63
>gi|325913348|ref|ZP_08175716.1| DNA ligase (NAD+) [Lactobacillus iners UPII 60-B]
gi|325477451|gb|EGC80595.1| DNA ligase (NAD+) [Lactobacillus iners UPII 60-B]
Length = 672
Score = 39.3 bits (90), Expect = 0.17, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
++ LS +A +EV L K YY D P+ D +YD+V ++L L++++P L D
Sbjct: 1 MSELSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLLDP 60
Query: 111 DHPWNTVG 118
D VG
Sbjct: 61 DSITQRVG 68
>gi|188533249|ref|YP_001907046.1| NAD-dependent DNA ligase LigA [Erwinia tasmaniensis Et1/99]
gi|254781330|sp|B2VE40|DNLJ_ERWT9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|188028291|emb|CAO96149.1| DNA ligase [Erwinia tasmaniensis Et1/99]
Length = 670
Score = 39.3 bits (90), Expect = 0.17, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ +L + H++ Y+ LD P D YDR+ L L+ PEL D P VG
Sbjct: 7 KITHLRTLLRHYEYQYHVLDAPAVPDAEYDRLMGELRELEAAHPELLTTDSPTQRVG 63
>gi|308063596|gb|ADO05483.1| NAD-dependent DNA ligase LigA [Helicobacter pylori Sat464]
Length = 656
Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S+ E + +EYL ++ HH YY LD+P+ +D +YD + + L +E+ P + P
Sbjct: 4 SQKEYLERIEYLNTLS-HH---YYNLDDPIVSDAVYDELYQELKVYEEKNPNNIQANSPT 59
Query: 115 NTVG 118
VG
Sbjct: 60 QKVG 63
>gi|91775756|ref|YP_545512.1| DNA ligase, NAD-dependent [Methylobacillus flagellatus KT]
gi|123254532|sp|Q1H1G6|DNLJ_METFK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|91709743|gb|ABE49671.1| DNA ligase, NAD-dependent [Methylobacillus flagellatus KT]
Length = 693
Score = 39.3 bits (90), Expect = 0.17, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 27/57 (47%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+VE L + YY L+ P D YDRV L AL++ PEL D P VG
Sbjct: 20 KVEALRATIRRYDYEYYVLNAPSVPDSEYDRVFRELKALEDAHPELVTPDSPTQRVG 76
>gi|86148411|ref|ZP_01066703.1| DNA ligase [Vibrio sp. MED222]
gi|85833825|gb|EAQ51991.1| DNA ligase [Vibrio sp. MED222]
Length = 670
Score = 39.3 bits (90), Expect = 0.17, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 32/63 (50%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
K + +E L + +H YY D+P D YDR+ ++L L+E+ PEL D P
Sbjct: 2 KESIQVTLEQLRETLHYHAVRYYVEDSPEIPDVEYDRLMQQLLKLEEENPELVTVDSPSQ 61
Query: 116 TVG 118
VG
Sbjct: 62 RVG 64
>gi|317012429|gb|ADU83037.1| NAD-dependent DNA ligase LigA [Helicobacter pylori Lithuania75]
Length = 656
Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Query: 64 EYLVKIAL-----HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
EYL +IA HH YY LD P+ +D +YD + + L A +E+ P + P VG
Sbjct: 7 EYLERIAYLNTLSHH---YYNLDEPIVSDAIYDELYQELKAYEEKNPNDIQANSPTQKVG 63
>gi|229591993|ref|YP_002874112.1| NAD-dependent DNA ligase LigA [Pseudomonas fluorescens SBW25]
gi|254781395|sp|C3JXX6|DNLJ_PSEFS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|229363859|emb|CAY51325.1| DNA ligase [Pseudomonas fluorescens SBW25]
Length = 785
Score = 39.3 bits (90), Expect = 0.17, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H Y+ LD P D YDR+ L AL+ + P+L D P VG
Sbjct: 17 QHNYRYHVLDEPSIPDAEYDRLFHELKALEAEHPDLVTRDSPTQRVG 63
>gi|110637718|ref|YP_677925.1| DNA ligase [Cytophaga hutchinsonii ATCC 33406]
gi|123354667|sp|Q11VI1|DNLJ_CYTH3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|110280399|gb|ABG58585.1| DNA ligase [Cytophaga hutchinsonii ATCC 33406]
Length = 670
Score = 39.3 bits (90), Expect = 0.17, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 33/65 (50%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ +A+ +E L K+ +H YY+ D +D +D + + L L++QFP D P
Sbjct: 1 MNDAQALARIEELNKVLHYHNNLYYQKDTTEISDFEFDTLLQELIELEKQFPLYLKADSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SQRVG 65
>gi|321314391|ref|YP_004206678.1| NAD-dependent DNA ligase LigA [Bacillus subtilis BSn5]
gi|320020665|gb|ADV95651.1| NAD-dependent DNA ligase LigA [Bacillus subtilis BSn5]
Length = 668
Score = 39.3 bits (90), Expect = 0.18, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ + L A++E+ P+L D P VG
Sbjct: 24 YYTLDEPSVPDAEYDRLMQELIAIEEEHPDLRTPDSPTQRVG 65
>gi|309782142|ref|ZP_07676872.1| DNA ligase, NAD-dependent [Ralstonia sp. 5_7_47FAA]
gi|308919208|gb|EFP64875.1| DNA ligase, NAD-dependent [Ralstonia sp. 5_7_47FAA]
Length = 813
Score = 39.3 bits (90), Expect = 0.18, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ L+AL+ + PEL D P VG
Sbjct: 31 YYVLDQPSVPDAEYDRLYRELEALEAEHPELKTPDSPTLRVG 72
>gi|291483102|dbj|BAI84177.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. natto
BEST195]
Length = 668
Score = 39.3 bits (90), Expect = 0.18, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ + L A++E+ P+L D P VG
Sbjct: 24 YYTLDEPSVPDAEYDRLMQELIAIEEEHPDLRTPDSPTQRVG 65
>gi|156740882|ref|YP_001431011.1| DNA ligase [Roseiflexus castenholzii DSM 13941]
gi|190359279|sp|A7NHP6|DNLJ_ROSCS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|156232210|gb|ABU56993.1| DNA ligase, NAD-dependent [Roseiflexus castenholzii DSM 13941]
Length = 718
Score = 39.3 bits (90), Expect = 0.18, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 30/65 (46%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ + + E L + +H YY LD P+ +D YD + L L+ PEL D P
Sbjct: 1 MTSNDPVRRAETLREQIRYHNYRYYVLDEPVISDAEYDALMRELRELEAAHPELVTPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|16077730|ref|NP_388544.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. subtilis
str. 168]
gi|221308499|ref|ZP_03590346.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. subtilis
str. 168]
gi|221312822|ref|ZP_03594627.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. subtilis
str. NCIB 3610]
gi|221317746|ref|ZP_03599040.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. subtilis
str. JH642]
gi|221322025|ref|ZP_03603319.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. subtilis
str. SMY]
gi|7673987|sp|O31498|DNLJ_BACSU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|2632976|emb|CAB12482.1| DNA ligase [Bacillus subtilis subsp. subtilis str. 168]
Length = 668
Score = 39.3 bits (90), Expect = 0.18, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ + L A++E+ P+L D P VG
Sbjct: 24 YYTLDEPSVPDAEYDRLMQELIAIEEEHPDLRTPDSPTQRVG 65
>gi|152984776|ref|YP_001349158.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa PA7]
gi|190359272|sp|A6V7X3|DNLJ_PSEA7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|150959934|gb|ABR81959.1| DNA ligase, NAD-dependent [Pseudomonas aeruginosa PA7]
Length = 794
Score = 39.3 bits (90), Expect = 0.18, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 22/45 (48%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
H YY LD P D YDR+ L AL+ + P+L D P V
Sbjct: 21 HNYRYYVLDEPSIPDAEYDRLFRELQALEAEHPQLLTPDSPTQRV 65
>gi|296330120|ref|ZP_06872602.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. spizizenii
ATCC 6633]
gi|305673365|ref|YP_003865037.1| NAD-dependent DNA ligase [Bacillus subtilis subsp. spizizenii str.
W23]
gi|296152709|gb|EFG93576.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. spizizenii
ATCC 6633]
gi|305411609|gb|ADM36728.1| NAD-dependent DNA ligase [Bacillus subtilis subsp. spizizenii str.
W23]
Length = 668
Score = 39.3 bits (90), Expect = 0.18, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ + L A++E+ P+L D P VG
Sbjct: 24 YYTLDEPSVPDAEYDRLMQELIAIEEEHPDLRTPDSPTQRVG 65
>gi|291278945|ref|YP_003495780.1| NAD-dependent DNA ligase [Deferribacter desulfuricans SSM1]
gi|290753647|dbj|BAI80024.1| NAD-dependent DNA ligase [Deferribacter desulfuricans SSM1]
Length = 663
Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
+H YY L++P+ +D YD++ +RL ++ ++PE+ P VGY
Sbjct: 18 YHDYRYYVLNDPVISDYEYDQLYKRLKEIESKYPEIISPYSPTQRVGY 65
>gi|326317205|ref|YP_004234877.1| DNA ligase, NAD-dependent [Acidovorax avenae subsp. avenae ATCC
19860]
gi|323374041|gb|ADX46310.1| DNA ligase, NAD-dependent [Acidovorax avenae subsp. avenae ATCC
19860]
Length = 732
Score = 39.3 bits (90), Expect = 0.18, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
HQ YY LD P D YDRV + L AL+ PEL D P V
Sbjct: 35 HQ--YYVLDAPTVPDAEYDRVFQALQALEAAHPELVTPDSPTQRV 77
>gi|254383201|ref|ZP_04998554.1| DNA ligase [Streptomyces sp. Mg1]
gi|194342099|gb|EDX23065.1| DNA ligase [Streptomyces sp. Mg1]
Length = 736
Score = 39.3 bits (90), Expect = 0.18, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H+ YY D P+ +D +D++ L+AL+EQ+P+L D P V
Sbjct: 31 HRFRYYVNDQPVVSDAEFDQLLRSLEALEEQYPQLRTPDSPTQKVA 76
>gi|166216290|sp|Q0AHH6|DNLJ_NITEC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
Length = 683
Score = 39.3 bits (90), Expect = 0.18, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 69 IALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
IALH YY D P+ D YD++ L L++Q+P L D P VG
Sbjct: 18 IALHDFH-YYVQDAPIIPDADYDKLFRTLQQLEQQYPHLITPDSPTQRVG 66
>gi|120611505|ref|YP_971183.1| DNA ligase [Acidovorax citrulli AAC00-1]
gi|166215380|sp|A1TR21|DNLJ_ACIAC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|120589969|gb|ABM33409.1| DNA ligase, NAD-dependent [Acidovorax citrulli AAC00-1]
Length = 732
Score = 39.3 bits (90), Expect = 0.18, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
HQ YY LD P D YDRV + L AL+ PEL D P V
Sbjct: 35 HQ--YYVLDAPTVPDAEYDRVFQALQALETAHPELVTPDSPTQRV 77
>gi|323705997|ref|ZP_08117567.1| DNA ligase, NAD-dependent [Thermoanaerobacterium xylanolyticum
LX-11]
gi|323534611|gb|EGB24392.1| DNA ligase, NAD-dependent [Thermoanaerobacterium xylanolyticum
LX-11]
Length = 659
Score = 39.3 bits (90), Expect = 0.18, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH YY LD P +D YD + L L+E++P+ D P VG
Sbjct: 16 HHSYMYYVLDKPEISDYEYDMMMRELIELEEKYPQFKTPDSPTQRVG 62
>gi|167631047|ref|YP_001681546.1| DNA ligase, nad-dependent [Heliobacterium modesticaldum Ice1]
gi|254781344|sp|B0TDL0|DNLJ_HELMI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|167593787|gb|ABZ85535.1| DNA ligase, nad-dependent [Heliobacterium modesticaldum Ice1]
Length = 675
Score = 39.3 bits (90), Expect = 0.18, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 23/46 (50%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY LD P +D YDR+ L L++ PEL D P VG
Sbjct: 27 HDYCYYVLDAPEISDAEYDRLMRELLDLEQSHPELVTADSPSQRVG 72
>gi|188997338|ref|YP_001931589.1| DNA ligase, NAD-dependent [Sulfurihydrogenibium sp. YO3AOP1]
gi|254781435|sp|B2V5U1|DNLJ_SULSY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|188932405|gb|ACD67035.1| DNA ligase, NAD-dependent [Sulfurihydrogenibium sp. YO3AOP1]
Length = 704
Score = 39.3 bits (90), Expect = 0.18, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 12/98 (12%)
Query: 20 TPAQWKKLLTLEAKFLPNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYR 79
T + K+L+ L +FL LD K L+K EA VE L ++ H YY
Sbjct: 3 TDERQKELIKLTYEFLK--------LDAKK----LTKEEAKKIVEDLREVIRFHDWRYYV 50
Query: 80 LDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
L P+ +D YD++ + L ++ ++PEL D P V
Sbjct: 51 LAQPVISDYEYDKLFKLLKDIEGKYPELITPDSPTQRV 88
>gi|241662937|ref|YP_002981297.1| DNA ligase [Ralstonia pickettii 12D]
gi|240864964|gb|ACS62625.1| DNA ligase, NAD-dependent [Ralstonia pickettii 12D]
Length = 813
Score = 39.3 bits (90), Expect = 0.18, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ L+AL+ + PEL D P VG
Sbjct: 31 YYVLDQPSVPDAEYDRLYRELEALEAEHPELKTPDSPTLRVG 72
>gi|119487266|ref|ZP_01621017.1| DNA ligase [Lyngbya sp. PCC 8106]
gi|119455821|gb|EAW36956.1| DNA ligase [Lyngbya sp. PCC 8106]
Length = 685
Score = 39.3 bits (90), Expect = 0.18, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P+ D +YD++ L L+ +P+L D P VG
Sbjct: 26 YYVLDAPIIEDAIYDQLYRELQQLETDYPQLITPDSPTQRVG 67
>gi|330718928|ref|ZP_08313528.1| DNA ligase, NAD-dependent [Leuconostoc fallax KCTC 3537]
Length = 681
Score = 39.3 bits (90), Expect = 0.18, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 33/74 (44%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
L + K V+ L+ +A E+ L + YY DNP D +YD RL L+ F
Sbjct: 2 LPEFKAVSELTTAQAQQEIAKLQDDLTRYGVEYYEDDNPSVEDHVYDAFYARLVDLEAAF 61
Query: 105 PELFDEDHPWNTVG 118
P+ + P VG
Sbjct: 62 PQFMTPESPTQRVG 75
>gi|261253653|ref|ZP_05946226.1| DNA ligase [Vibrio orientalis CIP 102891]
gi|260937044|gb|EEX93033.1| DNA ligase [Vibrio orientalis CIP 102891]
Length = 669
Score = 39.3 bits (90), Expect = 0.18, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 23/47 (48%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+H YY DNP D YDR+ L L+ Q PEL D P VG
Sbjct: 18 YHGVKYYVEDNPEIPDAEYDRLMRDLMELESQHPELMSIDSPSQRVG 64
>gi|254670337|emb|CBA05747.1| DNA ligase [Neisseria meningitidis alpha153]
Length = 841
Score = 39.3 bits (90), Expect = 0.18, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 37/83 (44%)
Query: 36 PNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSE 95
PN + ++ + K S K A + +L + + YY LD P D YD++
Sbjct: 3 PNSKHNTNFTNLLKPSDSDIKQFAAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFR 62
Query: 96 RLDALQEQFPELFDEDHPWNTVG 118
L+AL+ PEL D P VG
Sbjct: 63 ELEALERNHPELKLPDSPTQRVG 85
>gi|207723346|ref|YP_002253745.1| dna ligase (polydeoxyribonucleotide synthase [nad+]) (partial
sequence n terminus) protein [Ralstonia solanacearum
MolK2]
gi|206588545|emb|CAQ35508.1| probable dna ligase (polydeoxyribonucleotide synthase [nad+])
(partial sequence n terminus) protein [Ralstonia
solanacearum MolK2]
Length = 568
Score = 39.3 bits (90), Expect = 0.18, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ L+AL+ + PEL D P VG
Sbjct: 31 YYVLDQPSVPDAEYDRLYRALEALEAEHPELRTPDSPTLRVG 72
>gi|152981161|ref|YP_001353755.1| DNA ligase (polydeoxyribonucleotide synthase) [Janthinobacterium
sp. Marseille]
gi|166215814|sp|A6SZQ8|DNLJ_JANMA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|151281238|gb|ABR89648.1| DNA ligase (Polydeoxyribonucleotide synthase) [Janthinobacterium
sp. Marseille]
Length = 692
Score = 39.3 bits (90), Expect = 0.18, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 23/46 (50%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H Y+ LDNP D YD++ L AL+ PEL D P VG
Sbjct: 40 HNYSYHVLDNPSIPDAEYDKLFRELQALETSHPELLVFDSPTQRVG 85
>gi|83748812|ref|ZP_00945825.1| NAD-dependent DNA ligase [Ralstonia solanacearum UW551]
gi|207743250|ref|YP_002259642.1| dna ligase (polydeoxyribonucleotide synthase [nad+]) protein
[Ralstonia solanacearum IPO1609]
gi|83724504|gb|EAP71669.1| NAD-dependent DNA ligase [Ralstonia solanacearum UW551]
gi|206594647|emb|CAQ61574.1| dna ligase (polydeoxyribonucleotide synthase [nad+]) protein
[Ralstonia solanacearum IPO1609]
Length = 813
Score = 39.3 bits (90), Expect = 0.18, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ L+AL+ + PEL D P VG
Sbjct: 31 YYVLDQPSVPDAEYDRLYRALEALEAEHPELRTPDSPTLRVG 72
>gi|325141882|gb|EGC64324.1| DNA ligase, NAD-dependent [Neisseria meningitidis 961-5945]
Length = 841
Score = 39.3 bits (90), Expect = 0.19, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 37/83 (44%)
Query: 36 PNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSE 95
PN + ++ + K S K A + +L + + YY LD P D YD++
Sbjct: 3 PNSKHNTNFTNLLKPSDSDIKQFAAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFR 62
Query: 96 RLDALQEQFPELFDEDHPWNTVG 118
L+AL+ PEL D P VG
Sbjct: 63 ELEALERNHPELKLPDSPTQRVG 85
>gi|157374877|ref|YP_001473477.1| DNA ligase (NAD(+)) [Shewanella sediminis HAW-EB3]
gi|190359288|sp|A8FU26|DNLJ_SHESH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|157317251|gb|ABV36349.1| DNA ligase (NAD(+)) [Shewanella sediminis HAW-EB3]
Length = 670
Score = 39.3 bits (90), Expect = 0.19, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 27/57 (47%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E++ L + H YY D P D YDR+ RL L+ + PEL D P VG
Sbjct: 7 EIKQLTSVLNEHNYRYYVDDAPSVPDAEYDRLINRLKQLEAENPELCLPDSPTQRVG 63
>gi|218767787|ref|YP_002342299.1| putative DNA ligase [Neisseria meningitidis Z2491]
gi|166216217|sp|A1IQR7|DNLJ_NEIMA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|121051795|emb|CAM08101.1| putative DNA ligase [Neisseria meningitidis Z2491]
gi|319410038|emb|CBY90372.1| DNA ligase (polydeoxyribonucleotide synthase [NAD+]) [Neisseria
meningitidis WUE 2594]
Length = 841
Score = 39.3 bits (90), Expect = 0.19, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 37/83 (44%)
Query: 36 PNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSE 95
PN + ++ + K S K A + +L + + YY LD P D YD++
Sbjct: 3 PNSKHNTNFTNLLKPSDSDIKQFAAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFR 62
Query: 96 RLDALQEQFPELFDEDHPWNTVG 118
L+AL+ PEL D P VG
Sbjct: 63 ELEALERNHPELKLPDSPTQRVG 85
>gi|297544111|ref|YP_003676413.1| NAD-dependent DNA ligase [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
gi|296841886|gb|ADH60402.1| DNA ligase, NAD-dependent [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
Length = 662
Score = 39.3 bits (90), Expect = 0.19, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 68 KIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
KI H+ K YY LD P +D YD + L L+E++PEL D P VG
Sbjct: 13 KINYHNYK-YYVLDQPEISDYEYDMLMRELIELEEKYPELKTPDSPSQRVG 62
>gi|158312936|ref|YP_001505444.1| DNA ligase, NAD-dependent [Frankia sp. EAN1pec]
gi|254781334|sp|A8L538|DNLJ_FRASN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|158108341|gb|ABW10538.1| DNA ligase, NAD-dependent [Frankia sp. EAN1pec]
Length = 703
Score = 39.3 bits (90), Expect = 0.19, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 23/46 (50%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY LD P D YD + L+A++E+ PEL D P V
Sbjct: 40 HAYRYYVLDKPTVADAEYDALMRELEAIEERHPELRTPDSPTQKVA 85
>gi|254804544|ref|YP_003082765.1| DNA ligase [Neisseria meningitidis alpha14]
gi|254668086|emb|CBA04596.1| DNA ligase [Neisseria meningitidis alpha14]
Length = 841
Score = 39.3 bits (90), Expect = 0.19, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 37/83 (44%)
Query: 36 PNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSE 95
PN + ++ + K S K A + +L + + YY LD P D YD++
Sbjct: 3 PNSKHNTNFTNLLKPSDSDIKQFAAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFR 62
Query: 96 RLDALQEQFPELFDEDHPWNTVG 118
L+AL+ PEL D P VG
Sbjct: 63 ELEALERNHPELKLPDSPTQRVG 85
>gi|77458028|ref|YP_347533.1| NAD-dependent DNA ligase LigA [Pseudomonas fluorescens Pf0-1]
gi|123731132|sp|Q3KFB2|DNLJ_PSEPF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|77382031|gb|ABA73544.1| DNA ligase [Pseudomonas fluorescens Pf0-1]
Length = 785
Score = 39.3 bits (90), Expect = 0.19, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 22/47 (46%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H Y+ LD P D YDR+ L AL+ PEL D P VG
Sbjct: 17 QHNYRYHVLDEPSIPDAEYDRLFHELKALEAANPELITSDSPTQRVG 63
>gi|114330949|ref|YP_747171.1| DNA ligase, NAD-dependent [Nitrosomonas eutropha C91]
gi|114307963|gb|ABI59206.1| DNA ligase, NAD-dependent [Nitrosomonas eutropha C91]
Length = 715
Score = 39.3 bits (90), Expect = 0.19, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 69 IALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
IALH YY D P+ D YD++ L L++Q+P L D P VG
Sbjct: 50 IALHDFH-YYVQDAPIIPDADYDKLFRTLQQLEQQYPHLITPDSPTQRVG 98
>gi|163789388|ref|ZP_02183827.1| DNA ligase, NAD-dependent [Carnobacterium sp. AT7]
gi|159875242|gb|EDP69307.1| DNA ligase, NAD-dependent [Carnobacterium sp. AT7]
Length = 673
Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY D P D YD++ L AL+E+FP+L D P VG
Sbjct: 27 YYVKDTPSIPDADYDKLYHELVALEEEFPDLISNDSPTQRVG 68
>gi|118470314|ref|YP_886705.1| NAD-dependent DNA ligase LigA [Mycobacterium smegmatis str. MC2
155]
gi|166216211|sp|A0QUW7|DNLJ_MYCS2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|118171601|gb|ABK72497.1| DNA ligase, NAD-dependent [Mycobacterium smegmatis str. MC2 155]
Length = 701
Score = 39.3 bits (90), Expect = 0.20, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HQ YY D P+ +D +D++ L AL++ PEL D P VG
Sbjct: 35 HQFRYYVKDAPIISDAEFDKLLRELQALEDAHPELRTPDSPTQLVG 80
>gi|329920507|ref|ZP_08277239.1| DNA ligase (NAD+) [Lactobacillus iners SPIN 1401G]
gi|328936183|gb|EGG32636.1| DNA ligase (NAD+) [Lactobacillus iners SPIN 1401G]
Length = 672
Score = 39.3 bits (90), Expect = 0.20, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
++ LS +A +EV L K YY D P+ D +YD+V ++L L++++P L D
Sbjct: 1 MSELSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLIDP 60
Query: 111 DHPWNTVG 118
D VG
Sbjct: 61 DSITQRVG 68
>gi|315653834|ref|ZP_07906750.1| NAD-dependent DNA ligase LigA [Lactobacillus iners ATCC 55195]
gi|315488530|gb|EFU78176.1| NAD-dependent DNA ligase LigA [Lactobacillus iners ATCC 55195]
Length = 672
Score = 39.3 bits (90), Expect = 0.20, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
++ LS +A +EV L K YY D P+ D +YD+V ++L L++++P L D
Sbjct: 1 MSELSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLIDP 60
Query: 111 DHPWNTVG 118
D VG
Sbjct: 61 DSITQRVG 68
>gi|312875390|ref|ZP_07735394.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 2053A-b]
gi|311089053|gb|EFQ47493.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 2053A-b]
Length = 672
Score = 39.3 bits (90), Expect = 0.20, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
++ LS +A +EV L K YY D P+ D +YD+V ++L L++++P L D
Sbjct: 1 MSELSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLIDP 60
Query: 111 DHPWNTVG 118
D VG
Sbjct: 61 DSITQRVG 68
>gi|309808880|ref|ZP_07702761.1| DNA ligase (NAD+) [Lactobacillus iners LactinV 01V1-a]
gi|308167878|gb|EFO70015.1| DNA ligase (NAD+) [Lactobacillus iners LactinV 01V1-a]
Length = 672
Score = 39.3 bits (90), Expect = 0.20, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
++ LS +A +EV L K YY D P+ D +YD+V ++L L++++P L D
Sbjct: 1 MSELSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLIDP 60
Query: 111 DHPWNTVG 118
D VG
Sbjct: 61 DSITQRVG 68
>gi|239995022|ref|ZP_04715546.1| NAD-dependent DNA ligase [Alteromonas macleodii ATCC 27126]
Length = 70
Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+A ++E L + YY +D+P D +YDR + L AL++Q+P L + P V
Sbjct: 7 QAKQQIETLRNTLNEYNYQYYVMDDPSVPDAVYDRDMQALIALEKQYPTLQSPNSPSQKV 66
Query: 118 G 118
G
Sbjct: 67 G 67
>gi|88809499|ref|ZP_01125007.1| DNA ligase [Synechococcus sp. WH 7805]
gi|88786718|gb|EAR17877.1| DNA ligase [Synechococcus sp. WH 7805]
Length = 692
Score = 39.3 bits (90), Expect = 0.20, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E E+ L+ A H YY LD P D +YDR+ L L+ PEL + D P V
Sbjct: 3 ERAAELRQLLNRAAHA---YYVLDAPDLEDAVYDRLYRELLDLESAHPELVEADSPTQRV 59
Query: 118 G 118
G
Sbjct: 60 G 60
>gi|55821530|ref|YP_139972.1| NAD-dependent DNA ligase LigA [Streptococcus thermophilus LMG
18311]
gi|55823458|ref|YP_141899.1| NAD-dependent DNA ligase LigA [Streptococcus thermophilus CNRZ1066]
gi|81559086|sp|Q5LYL9|DNLJ_STRT1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|81560280|sp|Q5M382|DNLJ_STRT2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|55737515|gb|AAV61157.1| DNA ligase [Streptococcus thermophilus LMG 18311]
gi|55739443|gb|AAV63084.1| DNA ligase [Streptococcus thermophilus CNRZ1066]
Length = 652
Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ K YY DNP +D YD++ L L+ + PEL D P + VG
Sbjct: 14 QYAKEYYTEDNPSVSDAEYDKLYRELVTLEAEHPELVQADSPTHRVG 60
>gi|15606063|ref|NP_213440.1| DNA ligase (NAD dependent) [Aquifex aeolicus VF5]
gi|7673992|sp|O66880|DNLJ_AQUAE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|2983242|gb|AAC06838.1| DNA ligase (NAD dependent) [Aquifex aeolicus VF5]
Length = 720
Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
L K K V LS EA E L ++ +H YY NP+ D YDR+ L +++++
Sbjct: 18 LRKIKDVKVLSFEEAKKLAEDLREVIRYHDYKYYVEANPVIPDYDYDRLFRALKEIEKKY 77
Query: 105 PELFDEDHPWNTVG 118
PEL D P V
Sbjct: 78 PELITPDSPTQRVA 91
>gi|317489959|ref|ZP_07948451.1| DNA ligase [Eggerthella sp. 1_3_56FAA]
gi|316910957|gb|EFV32574.1| DNA ligase [Eggerthella sp. 1_3_56FAA]
Length = 708
Score = 39.3 bits (90), Expect = 0.20, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 13/89 (14%)
Query: 31 EAKFLPNKRAL-ESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGL 89
E + L +++AL E+ D A ++ +L + E+E HH YY D P +D
Sbjct: 4 EQQTLLDEQALAEATSDPAARIDALRR-----EIE-------HHSYLYYANDAPEISDAA 51
Query: 90 YDRVSERLDALQEQFPELFDEDHPWNTVG 118
+D + L L+ PEL D P VG
Sbjct: 52 FDSLMRELRELEAAHPELIDPSSPTQRVG 80
>gi|221632243|ref|YP_002521464.1| DNA ligase, NAD-dependent [Thermomicrobium roseum DSM 5159]
gi|254781441|sp|B9KXM2|DNLJ_THERP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|221155911|gb|ACM05038.1| DNA ligase, NAD-dependent [Thermomicrobium roseum DSM 5159]
Length = 695
Score = 39.3 bits (90), Expect = 0.20, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 29/61 (47%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E VE L ++ + YY L+ P +D YD + L +EQ+PEL D P V
Sbjct: 15 EVRARVEELRRLIQRYNYEYYVLNAPTVSDAEYDALMLELRRWEEQYPELVTPDSPTQRV 74
Query: 118 G 118
G
Sbjct: 75 G 75
>gi|212703192|ref|ZP_03311320.1| hypothetical protein DESPIG_01234 [Desulfovibrio piger ATCC 29098]
gi|212673458|gb|EEB33941.1| hypothetical protein DESPIG_01234 [Desulfovibrio piger ATCC 29098]
Length = 729
Score = 39.3 bits (90), Expect = 0.20, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 65 YLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
+L I HH Y+ LD P+ +D YD + L AL+E +P+
Sbjct: 63 WLTTILEHHNYLYHTLDKPVISDDQYDALFRELKALEEDYPQ 104
>gi|110833810|ref|YP_692669.1| NAD-dependent DNA ligase LigA [Alcanivorax borkumensis SK2]
gi|123345666|sp|Q0VR01|DNLJ_ALCBS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|110646921|emb|CAL16397.1| DNA ligase (NAD+) [Alcanivorax borkumensis SK2]
Length = 777
Score = 39.3 bits (90), Expect = 0.20, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 22/42 (52%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY D+P D YDRV L L+ Q+P+L D P VG
Sbjct: 25 YYVQDDPAVPDAEYDRVFRALKDLEAQYPDLVTADSPTQRVG 66
>gi|319941620|ref|ZP_08015944.1| DNA ligase [Sutterella wadsworthensis 3_1_45B]
gi|319804850|gb|EFW01704.1| DNA ligase [Sutterella wadsworthensis 3_1_45B]
Length = 745
Score = 39.3 bits (90), Expect = 0.20, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 74 QKW---YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++W YY LD P D YDR L AL+ +FPEL P VG
Sbjct: 69 ERWNYEYYVLDEPSVPDAEYDRAFNELKALEARFPELKSRTSPTLRVG 116
>gi|258508011|ref|YP_003170762.1| NAD-dependent DNA ligase [Lactobacillus rhamnosus GG]
gi|257147938|emb|CAR86911.1| NAD-dependent DNA ligase [Lactobacillus rhamnosus GG]
gi|259649339|dbj|BAI41501.1| DNA ligase [Lactobacillus rhamnosus GG]
Length = 674
Score = 39.3 bits (90), Expect = 0.20, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 31/71 (43%)
Query: 48 AKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
+K + EA E+ L K + YY D P TD +YD L AL+ FP+L
Sbjct: 3 SKPAAQFTLEEAEAEIAKLRKQLNQWRLEYYTKDAPTVTDNVYDDHYRDLQALEAAFPKL 62
Query: 108 FDEDHPWNTVG 118
D P VG
Sbjct: 63 VTPDSPTQQVG 73
>gi|229551868|ref|ZP_04440593.1| DNA ligase (NAD(+)) [Lactobacillus rhamnosus LMS2-1]
gi|258539286|ref|YP_003173785.1| NAD-dependent DNA ligase [Lactobacillus rhamnosus Lc 705]
gi|229314812|gb|EEN80785.1| DNA ligase (NAD(+)) [Lactobacillus rhamnosus LMS2-1]
gi|257150962|emb|CAR89934.1| NAD-dependent DNA ligase [Lactobacillus rhamnosus Lc 705]
Length = 674
Score = 39.3 bits (90), Expect = 0.20, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 31/71 (43%)
Query: 48 AKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
+K + EA E+ L K + YY D P TD +YD L AL+ FP+L
Sbjct: 3 SKPAAQFTLEEAEAEIAKLRKQLNQWRLEYYTKDAPTVTDNVYDDHYRDLQALEAAFPKL 62
Query: 108 FDEDHPWNTVG 118
D P VG
Sbjct: 63 VTPDSPTQQVG 73
>gi|325911416|ref|ZP_08173828.1| DNA ligase (NAD+) [Lactobacillus iners UPII 143-D]
gi|325476766|gb|EGC79920.1| DNA ligase (NAD+) [Lactobacillus iners UPII 143-D]
Length = 672
Score = 39.3 bits (90), Expect = 0.21, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
++ LS +A +EV L K YY D P+ D +YD+V ++L L++++P L D
Sbjct: 1 MSELSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLIDP 60
Query: 111 DHPWNTVG 118
D VG
Sbjct: 61 DSITQRVG 68
>gi|116628243|ref|YP_820862.1| NAD-dependent DNA ligase LigA [Streptococcus thermophilus LMD-9]
gi|116101520|gb|ABJ66666.1| NAD-dependent DNA ligase [Streptococcus thermophilus LMD-9]
Length = 648
Score = 39.3 bits (90), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ K YY DNP +D YD++ L L+ + PEL D P + VG
Sbjct: 10 QYAKEYYTEDNPSVSDAEYDKLYRELVTLEAEHPELVQADSPTHRVG 56
>gi|166216285|sp|Q03JF6|DNLJ_STRTD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
Length = 652
Score = 39.3 bits (90), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ K YY DNP +D YD++ L L+ + PEL D P + VG
Sbjct: 14 QYAKEYYTEDNPSVSDAEYDKLYRELVTLEAEHPELVQADSPTHRVG 60
>gi|326797492|ref|YP_004315311.1| DNA ligase [Sphingobacterium sp. 21]
gi|326548256|gb|ADZ76641.1| DNA ligase [Sphingobacterium sp. 21]
Length = 672
Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + +A+ +E L K H YY L P +D +D+ L AL++ +PE D D P
Sbjct: 1 MQRNDALSRIEALTKELNDHNYKYYVLAQPSISDFDFDQKLAELAALEKDYPEFLDPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQKVG 65
>gi|312278868|gb|ADQ63525.1| DNA ligase [Streptococcus thermophilus ND03]
Length = 648
Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ K YY DNP +D YD++ L L+ + PEL D P + VG
Sbjct: 10 QYAKEYYTEDNPSVSDAEYDKLYRELVTLEAEHPELVQADSPTHRVG 56
>gi|166032192|ref|ZP_02235021.1| hypothetical protein DORFOR_01895 [Dorea formicigenerans ATCC
27755]
gi|166027915|gb|EDR46672.1| hypothetical protein DORFOR_01895 [Dorea formicigenerans ATCC
27755]
Length = 690
Score = 38.9 bits (89), Expect = 0.21, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 52 TSLSKGEAMI--EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
T KG++M ++ LVK ++ YY D PL +D YDR+ + L L+EQ +
Sbjct: 19 TPQKKGDSMSVKRIKNLVKQLNEYRHAYYNQDAPLVSDAEYDRLFDELKELEEQTGFIL- 77
Query: 110 EDHPWNTVGY 119
+ P TVGY
Sbjct: 78 SNSPTQTVGY 87
>gi|120598462|ref|YP_963036.1| DNA ligase, NAD-dependent [Shewanella sp. W3-18-1]
gi|166216244|sp|A1RII7|DNLJ_SHESW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|120558555|gb|ABM24482.1| DNA ligase, NAD-dependent [Shewanella sp. W3-18-1]
Length = 685
Score = 38.9 bits (89), Expect = 0.21, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 23/46 (50%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY D P TD YDR+ + L L+ QFP+ D P VG
Sbjct: 33 HNIRYYVDDAPTITDSEYDRLMQCLIKLEAQFPQFIVADSPTQRVG 78
>gi|146293460|ref|YP_001183884.1| DNA ligase, NAD-dependent [Shewanella putrefaciens CN-32]
gi|166216243|sp|A4Y802|DNLJ_SHEPC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|145565150|gb|ABP76085.1| DNA ligase, NAD-dependent [Shewanella putrefaciens CN-32]
Length = 685
Score = 38.9 bits (89), Expect = 0.21, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 23/46 (50%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY D P TD YDR+ + L L+ QFP+ D P VG
Sbjct: 33 HNIRYYVDDAPTITDSEYDRLMQCLIKLEAQFPQFIVADSPTQRVG 78
>gi|309803834|ref|ZP_07697919.1| DNA ligase (NAD+) [Lactobacillus iners LactinV 11V1-d]
gi|312870780|ref|ZP_07730886.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 3008A-a]
gi|312873110|ref|ZP_07733169.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 2062A-h1]
gi|308164068|gb|EFO66330.1| DNA ligase (NAD+) [Lactobacillus iners LactinV 11V1-d]
gi|311091343|gb|EFQ49728.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 2062A-h1]
gi|311093656|gb|EFQ51994.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 3008A-a]
Length = 672
Score = 38.9 bits (89), Expect = 0.21, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
++ LS +A +EV L K YY D P+ D +YD+V ++L L++++P L D
Sbjct: 1 MSELSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLIDP 60
Query: 111 DHPWNTVG 118
D VG
Sbjct: 61 DSITQRVG 68
>gi|300856841|ref|YP_003781825.1| DNA ligase [Clostridium ljungdahlii DSM 13528]
gi|300436956|gb|ADK16723.1| DNA ligase [Clostridium ljungdahlii DSM 13528]
Length = 664
Score = 38.9 bits (89), Expect = 0.21, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L KI +H YY DNP +D YD + + L ++ + PE+ D P VG
Sbjct: 10 LKKIINYHNDRYYNQDNPEVSDYEYDMLMQELKNIEREHPEVITPDSPTQHVG 62
>gi|295397184|ref|ZP_06807287.1| NAD-dependent DNA ligase LigA [Aerococcus viridans ATCC 11563]
gi|294974573|gb|EFG50297.1| NAD-dependent DNA ligase LigA [Aerococcus viridans ATCC 11563]
Length = 670
Score = 38.9 bits (89), Expect = 0.21, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+E L ++ + YY LDNP +D YD++ L L+ ++P + P VG
Sbjct: 14 IEALTRLLNDYAYQYYALDNPTISDTEYDKLYRELQDLEAKYPTFIQAESPTQRVG 69
>gi|259501108|ref|ZP_05744010.1| DNA ligase [Lactobacillus iners DSM 13335]
gi|302190444|ref|ZP_07266698.1| DNA ligase [Lactobacillus iners AB-1]
gi|259167802|gb|EEW52297.1| DNA ligase [Lactobacillus iners DSM 13335]
Length = 672
Score = 38.9 bits (89), Expect = 0.21, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
++ LS +A +EV L K YY D P+ D +YD+V ++L L++++P L D
Sbjct: 1 MSELSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLIDP 60
Query: 111 DHPWNTVG 118
D VG
Sbjct: 61 DSITQRVG 68
>gi|309804542|ref|ZP_07698607.1| DNA ligase (NAD+) [Lactobacillus iners LactinV 09V1-c]
gi|309809394|ref|ZP_07703256.1| DNA ligase (NAD+) [Lactobacillus iners SPIN 2503V10-D]
gi|312873385|ref|ZP_07733436.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 2052A-d]
gi|308165934|gb|EFO68152.1| DNA ligase (NAD+) [Lactobacillus iners LactinV 09V1-c]
gi|308170305|gb|EFO72336.1| DNA ligase (NAD+) [Lactobacillus iners SPIN 2503V10-D]
gi|311091069|gb|EFQ49462.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 2052A-d]
Length = 672
Score = 38.9 bits (89), Expect = 0.21, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
++ LS +A +EV L K YY D P+ D +YD+V ++L L++++P L D
Sbjct: 1 MSELSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLIDP 60
Query: 111 DHPWNTVG 118
D VG
Sbjct: 61 DSITQRVG 68
>gi|240115079|ref|ZP_04729141.1| putative DNA ligase [Neisseria gonorrhoeae PID18]
gi|240125172|ref|ZP_04738058.1| putative DNA ligase [Neisseria gonorrhoeae SK-92-679]
gi|240127627|ref|ZP_04740288.1| putative DNA ligase [Neisseria gonorrhoeae SK-93-1035]
Length = 823
Score = 38.9 bits (89), Expect = 0.21, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 22/42 (52%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ L+AL+ PEL D P VG
Sbjct: 22 YYTLDAPSIPDAEYDRLFRELEALERNHPELKLPDSPTQRVG 63
>gi|240013546|ref|ZP_04720459.1| putative DNA ligase [Neisseria gonorrhoeae DGI18]
gi|240120618|ref|ZP_04733580.1| putative DNA ligase [Neisseria gonorrhoeae PID24-1]
Length = 823
Score = 38.9 bits (89), Expect = 0.21, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 22/42 (52%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ L+AL+ PEL D P VG
Sbjct: 22 YYTLDAPSIPDAEYDRLFRELEALERNHPELKLPDSPTQRVG 63
>gi|148272584|ref|YP_001222145.1| NAD-dependent DNA ligase LigA [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|166215575|sp|A5CQU5|DNLJ_CLAM3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|147830514|emb|CAN01449.1| NAD-dependant DNA ligase [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
Length = 853
Score = 38.9 bits (89), Expect = 0.21, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H+ YY D +D YD + L+AL+E P L +D P TVG
Sbjct: 40 HRDEYYGADASTLSDAEYDALVHELEALEEAHPTLRSQDSPTQTVG 85
>gi|146321044|ref|YP_001200755.1| NAD-dependent DNA ligase LigA [Streptococcus suis 98HAH33]
gi|253751920|ref|YP_003025061.1| DNA ligase [Streptococcus suis SC84]
gi|253753743|ref|YP_003026884.1| DNA ligase [Streptococcus suis P1/7]
gi|253755379|ref|YP_003028519.1| DNA ligase [Streptococcus suis BM407]
gi|166216248|sp|A4W1W6|DNLJ_STRS2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|145691850|gb|ABP92355.1| NAD-dependent DNA ligase (contains BRCT domain type II)
[Streptococcus suis 98HAH33]
gi|251816209|emb|CAZ51836.1| DNA ligase [Streptococcus suis SC84]
gi|251817843|emb|CAZ55596.1| DNA ligase [Streptococcus suis BM407]
gi|251819989|emb|CAR46142.1| DNA ligase [Streptococcus suis P1/7]
gi|292558495|gb|ADE31496.1| NAD-dependent DNA ligase [Streptococcus suis GZ1]
gi|319758281|gb|ADV70223.1| NAD-dependent DNA ligase LigA [Streptococcus suis JS14]
Length = 652
Score = 38.9 bits (89), Expect = 0.21, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 28/56 (50%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV + + K YY+LD P +D YD + L L+ PEL D P + VG
Sbjct: 5 ISELVSVLNQYAKEYYQLDQPSVSDAEYDTLYRELVELETAHPELILPDSPTHRVG 60
>gi|59800688|ref|YP_207400.1| putative DNA ligase [Neisseria gonorrhoeae FA 1090]
gi|75356380|sp|Q5F9Z9|DNLJ_NEIG1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|59717583|gb|AAW88988.1| putative DNA ligase [Neisseria gonorrhoeae FA 1090]
Length = 823
Score = 38.9 bits (89), Expect = 0.21, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 22/42 (52%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ L+AL+ PEL D P VG
Sbjct: 22 YYTLDAPSIPDAEYDRLFRELEALERNHPELKLPDSPTQRVG 63
>gi|268600753|ref|ZP_06134920.1| DNA ligase [Neisseria gonorrhoeae PID18]
gi|268683767|ref|ZP_06150629.1| DNA ligase [Neisseria gonorrhoeae SK-92-679]
gi|268686007|ref|ZP_06152869.1| DNA ligase [Neisseria gonorrhoeae SK-93-1035]
gi|293399617|ref|ZP_06643770.1| DNA ligase, NAD-dependent [Neisseria gonorrhoeae F62]
gi|268584884|gb|EEZ49560.1| DNA ligase [Neisseria gonorrhoeae PID18]
gi|268624051|gb|EEZ56451.1| DNA ligase [Neisseria gonorrhoeae SK-92-679]
gi|268626291|gb|EEZ58691.1| DNA ligase [Neisseria gonorrhoeae SK-93-1035]
gi|291610186|gb|EFF39308.1| DNA ligase, NAD-dependent [Neisseria gonorrhoeae F62]
Length = 829
Score = 38.9 bits (89), Expect = 0.21, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 22/42 (52%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ L+AL+ PEL D P VG
Sbjct: 28 YYTLDAPSIPDAEYDRLFRELEALERNHPELKLPDSPTQRVG 69
>gi|240122918|ref|ZP_04735874.1| putative DNA ligase [Neisseria gonorrhoeae PID332]
Length = 823
Score = 38.9 bits (89), Expect = 0.21, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 22/42 (52%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ L+AL+ PEL D P VG
Sbjct: 22 YYTLDAPSIPDAEYDRLFRELEALERNHPELKLPDSPTQRVG 63
>gi|240080125|ref|ZP_04724668.1| putative DNA ligase [Neisseria gonorrhoeae FA19]
gi|240117363|ref|ZP_04731425.1| putative DNA ligase [Neisseria gonorrhoeae PID1]
gi|260441105|ref|ZP_05794921.1| putative DNA ligase [Neisseria gonorrhoeae DGI2]
Length = 823
Score = 38.9 bits (89), Expect = 0.21, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 22/42 (52%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ L+AL+ PEL D P VG
Sbjct: 22 YYTLDAPSIPDAEYDRLFRELEALERNHPELKLPDSPTQRVG 63
>gi|240015985|ref|ZP_04722525.1| putative DNA ligase [Neisseria gonorrhoeae FA6140]
gi|240112339|ref|ZP_04726829.1| putative DNA ligase [Neisseria gonorrhoeae MS11]
Length = 823
Score = 38.9 bits (89), Expect = 0.21, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 22/42 (52%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ L+AL+ PEL D P VG
Sbjct: 22 YYTLDAPSIPDAEYDRLFRELEALERNHPELKLPDSPTQRVG 63
>gi|194097948|ref|YP_002000994.1| putative DNA ligase [Neisseria gonorrhoeae NCCP11945]
gi|239998421|ref|ZP_04718345.1| putative DNA ligase [Neisseria gonorrhoeae 35/02]
gi|254781380|sp|B4RJQ9|DNLJ_NEIG2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|193933238|gb|ACF29062.1| putative DNA ligase [Neisseria gonorrhoeae NCCP11945]
gi|317163707|gb|ADV07248.1| putative DNA ligase [Neisseria gonorrhoeae TCDC-NG08107]
Length = 823
Score = 38.9 bits (89), Expect = 0.21, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 22/42 (52%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ L+AL+ PEL D P VG
Sbjct: 22 YYTLDAPSIPDAEYDRLFRELEALERNHPELKLPDSPTQRVG 63
>gi|146318834|ref|YP_001198546.1| NAD-dependent DNA ligase LigA [Streptococcus suis 05ZYH33]
gi|166216250|sp|A4VVK7|DNLJ_STRSY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|145689640|gb|ABP90146.1| NAD-dependent DNA ligase (contains BRCT domain type II)
[Streptococcus suis 05ZYH33]
Length = 652
Score = 38.9 bits (89), Expect = 0.21, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 28/56 (50%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV + + K YY+LD P +D YD + L L+ PEL D P + VG
Sbjct: 5 ISELVSVLNQYAKEYYQLDQPSVSDAEYDTLYRELVELETAHPELILPDSPTHRVG 60
>gi|81429164|ref|YP_396165.1| NAD-dependent DNA ligase [Lactobacillus sakei subsp. sakei 23K]
gi|123755813|sp|Q38VC5|DNLJ_LACSS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|78610807|emb|CAI55858.1| NAD-dependent DNA ligase [Lactobacillus sakei subsp. sakei 23K]
Length = 677
Score = 38.9 bits (89), Expect = 0.22, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 32/71 (45%)
Query: 48 AKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
AK V ++ EA + L + + YY D PL D +YD + L+ L+ FP +
Sbjct: 4 AKLVEDYTQSEAASLAQQLRDQLADYSQAYYTQDAPLVEDHVYDELYRDLEQLEAAFPVI 63
Query: 108 FDEDHPWNTVG 118
D P VG
Sbjct: 64 VTNDSPTQKVG 74
>gi|302023934|ref|ZP_07249145.1| NAD-dependent DNA ligase LigA [Streptococcus suis 05HAS68]
gi|330832985|ref|YP_004401810.1| NAD-dependent DNA ligase LigA [Streptococcus suis ST3]
gi|329307208|gb|AEB81624.1| NAD-dependent DNA ligase LigA [Streptococcus suis ST3]
Length = 652
Score = 38.9 bits (89), Expect = 0.22, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 28/56 (50%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV + + K YY+LD P +D YD + L L+ PEL D P + VG
Sbjct: 5 ISELVSVLNQYAKEYYQLDQPSVSDAEYDTLYRELVELETAHPELILPDSPTHRVG 60
>gi|228469580|ref|ZP_04054573.1| DNA ligase, NAD-dependent [Porphyromonas uenonis 60-3]
gi|228308930|gb|EEK17605.1| DNA ligase, NAD-dependent [Porphyromonas uenonis 60-3]
Length = 679
Score = 38.9 bits (89), Expect = 0.22, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 29/58 (50%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+E+E L K H + YY + P +D YD + +RL L+ + PE D P VG
Sbjct: 8 LEIEQLRKTIEQHNRAYYLDNAPTISDADYDALMQRLLTLEAEHPEFADPTSPSLRVG 65
>gi|223932796|ref|ZP_03624793.1| DNA ligase, NAD-dependent [Streptococcus suis 89/1591]
gi|223898505|gb|EEF64869.1| DNA ligase, NAD-dependent [Streptococcus suis 89/1591]
Length = 652
Score = 38.9 bits (89), Expect = 0.22, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 28/56 (50%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV + + K YY+LD P +D YD + L L+ PEL D P + VG
Sbjct: 5 ISELVSVLNQYAKEYYQLDQPSVSDAEYDTLYRELVELETAHPELILPDSPTHRVG 60
>gi|254673676|emb|CBA09270.1| DNA ligase [Neisseria meningitidis alpha275]
Length = 423
Score = 38.9 bits (89), Expect = 0.22, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 37/83 (44%)
Query: 36 PNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSE 95
PN + ++ + K S K A + +L + + YY LD P D YD++
Sbjct: 3 PNSKHNTNFTNLLKPSDSDIKQFAAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFR 62
Query: 96 RLDALQEQFPELFDEDHPWNTVG 118
L+AL+ PEL D P VG
Sbjct: 63 ELEALERNHPELKLPDSPTQRVG 85
>gi|323228068|gb|EGA12205.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
Length = 276
Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ Q P+L D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVG 63
>gi|317009372|gb|ADU79952.1| NAD-dependent DNA ligase LigA [Helicobacter pylori India7]
Length = 656
Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Query: 64 EYLVKIAL-----HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
EYL +I HH YY LD+P+ +D +YD + + L A +E+ P + P VG
Sbjct: 7 EYLERIGYLNTLSHH---YYNLDDPIVSDAVYDELYQELKAYEEKNPSHIQANSPTQKVG 63
>gi|268681538|ref|ZP_06148400.1| DNA ligase [Neisseria gonorrhoeae PID332]
gi|268621822|gb|EEZ54222.1| DNA ligase [Neisseria gonorrhoeae PID332]
Length = 829
Score = 38.9 bits (89), Expect = 0.23, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 22/42 (52%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ L+AL+ PEL D P VG
Sbjct: 28 YYTLDAPSIPDAEYDRLFRELEALERNHPELKLPDSPTQRVG 69
>gi|268596277|ref|ZP_06130444.1| DNA ligase [Neisseria gonorrhoeae FA19]
gi|268603059|ref|ZP_06137226.1| DNA ligase [Neisseria gonorrhoeae PID1]
gi|291044437|ref|ZP_06570146.1| DNA ligase [Neisseria gonorrhoeae DGI2]
gi|268550065|gb|EEZ45084.1| DNA ligase [Neisseria gonorrhoeae FA19]
gi|268587190|gb|EEZ51866.1| DNA ligase [Neisseria gonorrhoeae PID1]
gi|291011331|gb|EFE03327.1| DNA ligase [Neisseria gonorrhoeae DGI2]
Length = 829
Score = 38.9 bits (89), Expect = 0.23, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 22/42 (52%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ L+AL+ PEL D P VG
Sbjct: 28 YYTLDAPSIPDAEYDRLFRELEALERNHPELKLPDSPTQRVG 69
>gi|268594283|ref|ZP_06128450.1| DNA ligase [Neisseria gonorrhoeae 35/02]
gi|268547672|gb|EEZ43090.1| DNA ligase [Neisseria gonorrhoeae 35/02]
Length = 827
Score = 38.9 bits (89), Expect = 0.23, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 22/42 (52%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ L+AL+ PEL D P VG
Sbjct: 26 YYTLDAPSIPDAEYDRLFRELEALERNHPELKLPDSPTQRVG 67
>gi|254493140|ref|ZP_05106311.1| DNA ligase [Neisseria gonorrhoeae 1291]
gi|268598398|ref|ZP_06132565.1| DNA ligase [Neisseria gonorrhoeae MS11]
gi|226512180|gb|EEH61525.1| DNA ligase [Neisseria gonorrhoeae 1291]
gi|268582529|gb|EEZ47205.1| DNA ligase [Neisseria gonorrhoeae MS11]
Length = 829
Score = 38.9 bits (89), Expect = 0.23, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 22/42 (52%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ L+AL+ PEL D P VG
Sbjct: 28 YYTLDAPSIPDAEYDRLFRELEALERNHPELKLPDSPTQRVG 69
>gi|304317508|ref|YP_003852653.1| DNA ligase, NAD-dependent [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302779010|gb|ADL69569.1| DNA ligase, NAD-dependent [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 659
Score = 38.9 bits (89), Expect = 0.23, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 23/47 (48%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH YY LD P +D YD + L L+E+ PE D P VG
Sbjct: 16 HHNYMYYVLDRPEISDYEYDMMMRELIKLEEEHPEFKTPDSPTQRVG 62
>gi|126729669|ref|ZP_01745482.1| DNA ligase, NAD-dependent [Sagittula stellata E-37]
gi|126709788|gb|EBA08841.1| DNA ligase, NAD-dependent [Sagittula stellata E-37]
Length = 714
Score = 38.9 bits (89), Expect = 0.23, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 38/82 (46%)
Query: 37 NKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSER 96
+ RA E +V +++ +A E+ L I + Y+ D P TD YDR+ R
Sbjct: 2 DDRASEELGMNDTEVGQMTEDQAREELRALSDILGQANRAYHAEDAPELTDAEYDRLKRR 61
Query: 97 LDALQEQFPELFDEDHPWNTVG 118
++ +FP+L D P VG
Sbjct: 62 NAEIEARFPQLKLADSPSEQVG 83
>gi|158521726|ref|YP_001529596.1| DNA ligase, NAD-dependent [Desulfococcus oleovorans Hxd3]
gi|254781314|sp|A9A0L9|DNLJ_DESOH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|158510552|gb|ABW67519.1| DNA ligase, NAD-dependent [Desulfococcus oleovorans Hxd3]
Length = 682
Score = 38.9 bits (89), Expect = 0.23, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 29/66 (43%)
Query: 53 SLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDH 112
+L K EA V +L H YY D P +D YDR+ L L+ P+L D
Sbjct: 4 TLDKSEAKERVTFLRNELHRHNHLYYIKDAPEISDAEYDRLFRELAELEALHPDLADPAS 63
Query: 113 PWNTVG 118
P VG
Sbjct: 64 PTARVG 69
>gi|157826142|ref|YP_001493862.1| NAD-dependent DNA ligase LigA [Rickettsia akari str. Hartford]
gi|166216231|sp|A8GPM9|DNLJ_RICAH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|157800100|gb|ABV75354.1| DNA ligase [Rickettsia akari str. Hartford]
Length = 689
Score = 38.9 bits (89), Expect = 0.23, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 49 KKVTSLSKGEAMIEVEYL-VKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
+ + +S+ EA +E L KIA ++ YY DNPL +D YD++ L++QFP L
Sbjct: 2 QNIDFISEAEAKKLLEELSCKIAAYNHA-YYIEDNPLVSDAEYDQLVNINLKLEQQFPHL 60
Query: 108 FDEDHPWNTVG 118
E+ P VG
Sbjct: 61 VLENSPSKEVG 71
>gi|224826983|ref|ZP_03700081.1| DNA ligase, NAD-dependent [Lutiella nitroferrum 2002]
gi|224600816|gb|EEG07001.1| DNA ligase, NAD-dependent [Lutiella nitroferrum 2002]
Length = 815
Score = 38.9 bits (89), Expect = 0.24, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 32/66 (48%)
Query: 53 SLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDH 112
S + +A+ + LV + + + YY D P D YDR+ L+AL+ PEL D
Sbjct: 8 SNEREQAVQRIAELVPLLNRYSREYYERDEPTVPDVEYDRLYRELEALEAAHPELRRADS 67
Query: 113 PWNTVG 118
P VG
Sbjct: 68 PTLRVG 73
>gi|122879187|ref|YP_201049.6| NAD-dependent DNA ligase LigA [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|166216280|sp|Q5H057|DNLJ_XANOR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
Length = 841
Score = 38.9 bits (89), Expect = 0.24, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY L +P TD YD++ L L++++PEL D P VG
Sbjct: 23 YYDLADPEITDAQYDQLFRELQELEQKYPELVTADSPSMRVG 64
>gi|84623945|ref|YP_451317.1| NAD-dependent DNA ligase LigA [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|123752764|sp|Q2P334|DNLJ_XANOM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|84367885|dbj|BAE69043.1| DNA ligase [Xanthomonas oryzae pv. oryzae MAFF 311018]
Length = 841
Score = 38.9 bits (89), Expect = 0.24, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY L +P TD YD++ L L++++PEL D P VG
Sbjct: 23 YYDLADPEITDAQYDQLFRELQELEQKYPELVTADSPSMRVG 64
>gi|299067453|emb|CBJ38652.1| DNA ligase [Ralstonia solanacearum CMR15]
Length = 813
Score = 38.9 bits (89), Expect = 0.24, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 22/42 (52%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ L+AL+ PEL D P VG
Sbjct: 31 YYVLDQPSVPDAEYDRLYRELEALEADHPELRTPDSPTLRVG 72
>gi|260769097|ref|ZP_05878031.1| DNA ligase [Vibrio furnissii CIP 102972]
gi|260617127|gb|EEX42312.1| DNA ligase [Vibrio furnissii CIP 102972]
Length = 669
Score = 38.9 bits (89), Expect = 0.24, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 67 VKIALH-HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+K LH H YY D+P D YDR+ L L+ Q PEL D P VG
Sbjct: 11 LKDTLHYHAIRYYVEDDPTIPDAEYDRLMRELLDLEAQHPELVTPDSPSQRVG 63
>gi|148240764|ref|YP_001226151.1| NAD-dependent DNA ligase LigA [Synechococcus sp. WH 7803]
gi|166216252|sp|A5GPI9|DNLJ_SYNPW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|147849303|emb|CAK24854.1| NAD-dependent DNA ligase [Synechococcus sp. WH 7803]
Length = 698
Score = 38.9 bits (89), Expect = 0.24, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E E+ L+ A H YY LD P D +YDR+ L L+ PEL + D P V
Sbjct: 9 ERAAELRQLLNRAAHA---YYVLDAPDLEDSVYDRLYRELLDLEAAHPELVEADSPTQRV 65
Query: 118 G 118
G
Sbjct: 66 G 66
>gi|254488738|ref|ZP_05101943.1| DNA ligase, NAD-dependent [Roseobacter sp. GAI101]
gi|214045607|gb|EEB86245.1| DNA ligase, NAD-dependent [Roseobacter sp. GAI101]
Length = 706
Score = 38.9 bits (89), Expect = 0.24, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 31/68 (45%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V LSK +A E+ L + + YY D P +D YD + R ++ +FP L
Sbjct: 7 VQDLSKDQAAEELRRLSGLLAQANRQYYAEDAPQISDAEYDCLKRRNTEIETRFPSLKRA 66
Query: 111 DHPWNTVG 118
D P +G
Sbjct: 67 DSPTEQIG 74
>gi|301169841|emb|CBW29445.1| DNA ligase, NAD(+)-dependent [Haemophilus influenzae 10810]
Length = 670
Score = 38.9 bits (89), Expect = 0.24, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L K ++ Y+ LD+P D YDR+ +L AL+ + PE D P VG
Sbjct: 7 QLDNLRKTLRQYEYEYHVLDHPSVPDSEYDRLFHQLKALELEHPEFLTSDSPTQRVG 63
>gi|298293088|ref|YP_003695027.1| DNA ligase, NAD-dependent [Starkeya novella DSM 506]
gi|296929599|gb|ADH90408.1| DNA ligase, NAD-dependent [Starkeya novella DSM 506]
Length = 725
Score = 38.9 bits (89), Expect = 0.25, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 32/68 (47%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V L+ EA E L H + YY+ D P +D YD + R +A++ QFPEL
Sbjct: 10 VEKLTADEAAKEHARLGDEIAGHDRRYYQDDAPSVSDADYDALRRRYEAIEAQFPELKGI 69
Query: 111 DHPWNTVG 118
D VG
Sbjct: 70 DSLSEKVG 77
>gi|149275978|ref|ZP_01882123.1| DNA ligase [Pedobacter sp. BAL39]
gi|149233406|gb|EDM38780.1| DNA ligase [Pedobacter sp. BAL39]
Length = 671
Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK E +++ LVK H YY L P D +DR L+ L++Q+PE D + P
Sbjct: 1 MSKNEVKDKMDALVKELNQHTYDYYVLAMPTIADYEFDRKLAALNKLEQQYPEYADPNSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQQVG 65
>gi|332880018|ref|ZP_08447702.1| DNA ligase [Capnocytophaga sp. oral taxon 329 str. F0087]
gi|332682014|gb|EGJ54927.1| DNA ligase [Capnocytophaga sp. oral taxon 329 str. F0087]
Length = 663
Score = 38.9 bits (89), Expect = 0.25, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY LD P +D +D+ + L AL++ PE +DE+ P VG
Sbjct: 14 QHNYNYYVLDTPTISDFEFDQKLKELQALEQAHPEYYDENSPTVRVG 60
>gi|24216818|ref|NP_714299.1| NAD dependent DNA ligase [Leptospira interrogans serovar Lai str.
56601]
gi|81465271|sp|Q8EYU4|DNLJ_LEPIN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|24198185|gb|AAN51317.1| NAD dependent DNA ligase [Leptospira interrogans serovar Lai str.
56601]
Length = 681
Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%)
Query: 53 SLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDH 112
+LS+ EA + L HHQ YY ++P +D +D++ RL L+E+FP+ D
Sbjct: 11 TLSEKEAKGLIAKLSDEIRHHQYLYYVKNDPKISDFDFDQLFRRLQDLEEEFPQFKDLAS 70
Query: 113 PWNTVG 118
P VG
Sbjct: 71 PTLVVG 76
>gi|293188969|ref|ZP_06607703.1| DNA ligase, NAD-dependent [Actinomyces odontolyticus F0309]
gi|292822104|gb|EFF81029.1| DNA ligase, NAD-dependent [Actinomyces odontolyticus F0309]
Length = 777
Score = 38.9 bits (89), Expect = 0.25, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY D+P D YDR+ ++ ++E++P+L D P +VG
Sbjct: 30 YYDRDSPTLADADYDRMYREVEQIEERYPQLRSADSPTMSVG 71
>gi|262276434|ref|ZP_06054243.1| DNA ligase [Grimontia hollisae CIP 101886]
gi|262220242|gb|EEY71558.1| DNA ligase [Grimontia hollisae CIP 101886]
Length = 670
Score = 38.9 bits (89), Expect = 0.25, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+H YY D P D YDR+ + L A++ + PEL D P VG
Sbjct: 18 YHGHLYYVEDKPELPDAEYDRMMQELLAIEAKHPELVTADSPSQRVG 64
>gi|289804479|ref|ZP_06535108.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Typhi str. AG3]
Length = 119
Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ Q P+L D P VG
Sbjct: 17 HHEYLYHVMDAPEILDAEYDRLMRELRELEAQRPDLITPDSPTQRVG 63
>gi|167038089|ref|YP_001665667.1| NAD-dependent DNA ligase [Thermoanaerobacter pseudethanolicus ATCC
33223]
gi|320116496|ref|YP_004186655.1| NAD-dependent DNA ligase [Thermoanaerobacter brockii subsp. finnii
Ako-1]
gi|254781439|sp|B0KBN6|DNLJ_THEP3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|166856923|gb|ABY95331.1| DNA ligase, NAD-dependent [Thermoanaerobacter pseudethanolicus ATCC
33223]
gi|319929587|gb|ADV80272.1| DNA ligase, NAD-dependent [Thermoanaerobacter brockii subsp. finnii
Ako-1]
Length = 662
Score = 38.9 bits (89), Expect = 0.26, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 25/47 (53%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+H YY LD P +D YD + L L+E++PEL D P VG
Sbjct: 16 YHNYRYYVLDQPEISDYEYDMLMRELIELEEKYPELKTPDSPSQRVG 62
>gi|289704853|ref|ZP_06501270.1| DNA ligase (NAD(+)) [Micrococcus luteus SK58]
gi|289558349|gb|EFD51623.1| DNA ligase (NAD(+)) [Micrococcus luteus SK58]
Length = 797
Score = 38.9 bits (89), Expect = 0.26, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 28/57 (49%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E E LV+ + YY+ D P +D YD + RL+ L+ PEL D P VG
Sbjct: 24 EYEDLVERVRAARTAYYQRDAPEISDAEYDALYRRLEDLEALHPELVSNDSPTQEVG 80
>gi|289577826|ref|YP_003476453.1| DNA ligase, NAD-dependent [Thermoanaerobacter italicus Ab9]
gi|289527539|gb|ADD01891.1| DNA ligase, NAD-dependent [Thermoanaerobacter italicus Ab9]
Length = 662
Score = 38.9 bits (89), Expect = 0.26, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 25/47 (53%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+H YY LD P +D YD + L L+E++PEL D P VG
Sbjct: 16 YHNYRYYVLDQPEISDYEYDMLMRELIELEEKYPELKTPDSPSQRVG 62
>gi|167039197|ref|YP_001662182.1| NAD-dependent DNA ligase [Thermoanaerobacter sp. X514]
gi|256752857|ref|ZP_05493696.1| DNA ligase, NAD-dependent [Thermoanaerobacter ethanolicus CCSD1]
gi|300913208|ref|ZP_07130525.1| DNA ligase, NAD-dependent [Thermoanaerobacter sp. X561]
gi|307723778|ref|YP_003903529.1| NAD-dependent DNA ligase [Thermoanaerobacter sp. X513]
gi|254781440|sp|B0K3S1|DNLJ_THEPX RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|166853437|gb|ABY91846.1| DNA ligase, NAD-dependent [Thermoanaerobacter sp. X514]
gi|256748259|gb|EEU61324.1| DNA ligase, NAD-dependent [Thermoanaerobacter ethanolicus CCSD1]
gi|300889893|gb|EFK85038.1| DNA ligase, NAD-dependent [Thermoanaerobacter sp. X561]
gi|307580839|gb|ADN54238.1| DNA ligase, NAD-dependent [Thermoanaerobacter sp. X513]
Length = 662
Score = 38.9 bits (89), Expect = 0.26, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 25/47 (53%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+H YY LD P +D YD + L L+E++PEL D P VG
Sbjct: 16 YHNYRYYVLDQPEISDYEYDMLMRELIELEEKYPELKTPDSPSQRVG 62
>gi|45659103|ref|YP_003189.1| NAD dependent DNA ligase [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|81406496|sp|Q72MA6|DNLJ_LEPIC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|45602349|gb|AAS71826.1| NAD dependent DNA ligase [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
Length = 681
Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%)
Query: 53 SLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDH 112
+LS+ EA + L HHQ YY ++P +D +D++ RL L+E+FP+ D
Sbjct: 11 TLSEKEAKGLIAKLSDEIRHHQYLYYVKNDPKISDFDFDQLFRRLQDLEEEFPQFKDLAS 70
Query: 113 PWNTVG 118
P VG
Sbjct: 71 PTLVVG 76
>gi|213027451|ref|ZP_03341898.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Typhi str. 404ty]
Length = 79
Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ Q P+L D P VG
Sbjct: 17 HHEYLYHVMDAPEILDAEYDRLMRELRELEAQRPDLITPDSPTQRVG 63
>gi|300691610|ref|YP_003752605.1| DNA ligase [Ralstonia solanacearum PSI07]
gi|299078670|emb|CBJ51328.1| DNA ligase [Ralstonia solanacearum PSI07]
Length = 813
Score = 38.9 bits (89), Expect = 0.26, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 22/42 (52%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ L+AL+ PEL D P VG
Sbjct: 31 YYVLDQPSVPDAEYDRLYRELEALEADHPELKTPDSPTLRVG 72
>gi|319762938|ref|YP_004126875.1| DNA ligase, nad-dependent [Alicycliphilus denitrificans BC]
gi|330825018|ref|YP_004388321.1| DNA ligase [Alicycliphilus denitrificans K601]
gi|317117499|gb|ADU99987.1| DNA ligase, NAD-dependent [Alicycliphilus denitrificans BC]
gi|329310390|gb|AEB84805.1| DNA ligase, NAD-dependent [Alicycliphilus denitrificans K601]
Length = 717
Score = 38.9 bits (89), Expect = 0.26, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 22/41 (53%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
YY LD P D YDRV ++L AL+ +P L D P V
Sbjct: 37 YYVLDEPSVPDAEYDRVFQQLQALEGAYPALVTPDSPTQRV 77
>gi|127513305|ref|YP_001094502.1| DNA ligase, NAD-dependent [Shewanella loihica PV-4]
gi|166216242|sp|A3QFJ5|DNLJ_SHELP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|126638600|gb|ABO24243.1| DNA ligase, NAD-dependent [Shewanella loihica PV-4]
Length = 669
Score = 38.9 bits (89), Expect = 0.26, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 26/57 (45%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E++ L H YY D P D YDR+ RL L+ + PEL D P VG
Sbjct: 7 EIKQLTDELNQHNYRYYVDDAPSIPDAEYDRLMRRLQELEAEHPELALADSPTQRVG 63
>gi|332970057|gb|EGK09055.1| NAD-dependent DNA ligase LigA [Desmospora sp. 8437]
Length = 670
Score = 38.9 bits (89), Expect = 0.26, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 32/65 (49%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + EA +E L + H Y+ L+ P+ +D YD + L L+++ PEL D P
Sbjct: 1 MERKEAEQRIEALRREIHEHDHRYHVLNQPVISDQEYDAMMRELLGLEQEHPELVTPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SQRVG 65
>gi|228995667|ref|ZP_04155330.1| DNA ligase [Bacillus mycoides Rock3-17]
gi|228764044|gb|EEM12928.1| DNA ligase [Bacillus mycoides Rock3-17]
Length = 669
Score = 38.9 bits (89), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK EA +E L + Y+ LDNP +D YDR + L L+ + PE ED P
Sbjct: 1 MSKEEAKQRIEELRDMLNAFNYQYHVLDNPSVSDAEYDRDMQELIKLEAENPEFLIEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TVRVG 65
>gi|239917127|ref|YP_002956685.1| DNA ligase, NAD-dependent [Micrococcus luteus NCTC 2665]
gi|239838334|gb|ACS30131.1| DNA ligase, NAD-dependent [Micrococcus luteus NCTC 2665]
Length = 797
Score = 38.5 bits (88), Expect = 0.27, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 28/57 (49%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E E LV+ + YY+ D P +D YD + RL+ L+ PEL D P VG
Sbjct: 24 EYEDLVERVRAARTAYYQRDAPEISDAEYDALYRRLEDLEALHPELVSNDSPTQEVG 80
>gi|228989472|ref|ZP_04149457.1| DNA ligase [Bacillus pseudomycoides DSM 12442]
gi|228770197|gb|EEM18776.1| DNA ligase [Bacillus pseudomycoides DSM 12442]
Length = 669
Score = 38.5 bits (88), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK EA +E L + Y+ LDNP +D YDR + L L+ + PE ED P
Sbjct: 1 MSKEEAKQRIEELRDMLNAFNYQYHVLDNPSVSDAEYDRDMQELIKLEAENPEFLIEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TVRVG 65
>gi|229003296|ref|ZP_04161126.1| DNA ligase [Bacillus mycoides Rock1-4]
gi|228757914|gb|EEM07129.1| DNA ligase [Bacillus mycoides Rock1-4]
Length = 669
Score = 38.5 bits (88), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK EA +E L + Y+ LDNP +D YDR + L L+ + PE ED P
Sbjct: 1 MSKEEAKQRIEELRDMLNAFNYQYHVLDNPSVSDAEYDRDMQELIKLEAENPEFLIEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TVRVG 65
>gi|257791950|ref|YP_003182556.1| DNA ligase, NAD-dependent [Eggerthella lenta DSM 2243]
gi|325829905|ref|ZP_08163363.1| DNA ligase (NAD+) [Eggerthella sp. HGA1]
gi|257475847|gb|ACV56167.1| DNA ligase, NAD-dependent [Eggerthella lenta DSM 2243]
gi|325488072|gb|EGC90509.1| DNA ligase (NAD+) [Eggerthella sp. HGA1]
Length = 708
Score = 38.5 bits (88), Expect = 0.28, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 13/89 (14%)
Query: 31 EAKFLPNKRAL-ESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGL 89
E + L +++AL E+ D A ++ +L + E+E HH YY D P +D
Sbjct: 4 EQQTLLDEQALAEATNDPAARIDALRR-----EIE-------HHSYLYYANDAPEISDAA 51
Query: 90 YDRVSERLDALQEQFPELFDEDHPWNTVG 118
+D + L L+ PEL D P VG
Sbjct: 52 FDSLMRELRELEAAHPELIDPSSPTQRVG 80
>gi|225075650|ref|ZP_03718849.1| hypothetical protein NEIFLAOT_00666 [Neisseria flavescens
NRL30031/H210]
gi|224953072|gb|EEG34281.1| hypothetical protein NEIFLAOT_00666 [Neisseria flavescens
NRL30031/H210]
Length = 822
Score = 38.5 bits (88), Expect = 0.28, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 28/56 (50%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++YL + + YY LD P D YD++ L+AL+ PEL D P VG
Sbjct: 8 IQYLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALELNHPELKLPDSPTQRVG 63
>gi|187734527|ref|YP_001876639.1| DNA ligase, NAD-dependent [Akkermansia muciniphila ATCC BAA-835]
gi|254781249|sp|B2UL69|DNLJ_AKKM8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|187424579|gb|ACD03858.1| DNA ligase, NAD-dependent [Akkermansia muciniphila ATCC BAA-835]
Length = 794
Score = 38.5 bits (88), Expect = 0.28, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 27/56 (48%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++YL H + YY P +D YD + L+ L++ PEL D D P VG
Sbjct: 49 IDYLRSELRRHNRLYYEQAEPEISDAEYDALFLELEKLEKAHPELSDPDSPTRRVG 104
>gi|312865342|ref|ZP_07725570.1| DNA ligase (NAD+) [Streptococcus downei F0415]
gi|311099453|gb|EFQ57669.1| DNA ligase (NAD+) [Streptococcus downei F0415]
Length = 673
Score = 38.5 bits (88), Expect = 0.28, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ K YY DNP +D YD++ L L++ PEL D P + VG
Sbjct: 36 YAKEYYTQDNPSVSDAQYDKLYRELVDLEKAHPELVQADSPTHRVG 81
>gi|213850350|ref|ZP_03381248.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Typhi str. M223]
Length = 110
Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ Q P+L D P VG
Sbjct: 17 HHEYLYHVMDAPEILDAEYDRLMRELRELEAQRPDLITPDSPTQRVG 63
>gi|325928155|ref|ZP_08189364.1| DNA ligase, NAD-dependent [Xanthomonas perforans 91-118]
gi|325541451|gb|EGD12984.1| DNA ligase, NAD-dependent [Xanthomonas perforans 91-118]
Length = 833
Score = 38.5 bits (88), Expect = 0.29, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
Y+ LD P D YD++ L+AL+ PEL D P VG+
Sbjct: 25 YHVLDEPQMADADYDKLMRELEALERAHPELASADSPTQRVGH 67
>gi|78047224|ref|YP_363399.1| NAD-dependent DNA ligase LigA [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|123744002|sp|Q3BV14|DNLJ_XANC5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|78035654|emb|CAJ23345.1| DNA ligase [Xanthomonas campestris pv. vesicatoria str. 85-10]
Length = 833
Score = 38.5 bits (88), Expect = 0.29, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
Y+ LD P D YD++ L+AL+ PEL D P VG+
Sbjct: 25 YHVLDEPQMADADYDKLMRELEALERAHPELASADSPTQRVGH 67
>gi|294665962|ref|ZP_06731226.1| DNA ligase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
10535]
gi|292604265|gb|EFF47652.1| DNA ligase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
10535]
Length = 833
Score = 38.5 bits (88), Expect = 0.29, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
Y+ LD P D YD++ L+AL+ PEL D P VG+
Sbjct: 25 YHVLDEPQMADADYDKLMRELEALERAHPELASADSPTQRVGH 67
>gi|294626370|ref|ZP_06704972.1| DNA ligase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
11122]
gi|292599371|gb|EFF43506.1| DNA ligase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
11122]
Length = 833
Score = 38.5 bits (88), Expect = 0.29, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
Y+ LD P D YD++ L+AL+ PEL D P VG+
Sbjct: 25 YHVLDEPQMADADYDKLMRELEALERAHPELASADSPTQRVGH 67
>gi|254427631|ref|ZP_05041338.1| DNA ligase, NAD-dependent [Alcanivorax sp. DG881]
gi|196193800|gb|EDX88759.1| DNA ligase, NAD-dependent [Alcanivorax sp. DG881]
Length = 776
Score = 38.5 bits (88), Expect = 0.29, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY D+P D YDR L L+ Q+P+L D P VG
Sbjct: 24 YYVQDDPAVPDAEYDRAFRELKDLEAQYPDLITADSPTQRVG 65
>gi|269216606|ref|ZP_06160460.1| DNA ligase, NAD-dependent [Slackia exigua ATCC 700122]
gi|269130135|gb|EEZ61217.1| DNA ligase, NAD-dependent [Slackia exigua ATCC 700122]
Length = 709
Score = 38.5 bits (88), Expect = 0.29, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 25/56 (44%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
V L K HH YY D P +D +D + L L++ PEL D P VG
Sbjct: 23 VRALRKEIEHHTYLYYAKDAPEISDAAFDSLMRELRELEQAHPELIDPTSPTQRVG 78
>gi|21242377|ref|NP_641959.1| NAD-dependent DNA ligase LigA [Xanthomonas axonopodis pv. citri
str. 306]
gi|81803317|sp|Q8PM07|DNLJ_XANAC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|21107814|gb|AAM36495.1| DNA ligase [Xanthomonas axonopodis pv. citri str. 306]
Length = 833
Score = 38.5 bits (88), Expect = 0.29, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
Y+ LD P D YD++ L+AL+ PEL D P VG+
Sbjct: 25 YHVLDEPQMADADYDKLMRELEALERAHPELASADSPTQRVGH 67
>gi|298528094|ref|ZP_07015498.1| DNA ligase, NAD-dependent [Desulfonatronospira thiodismutans
ASO3-1]
gi|298511746|gb|EFI35648.1| DNA ligase, NAD-dependent [Desulfonatronospira thiodismutans
ASO3-1]
Length = 679
Score = 38.5 bits (88), Expect = 0.30, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 25/46 (54%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H +YY LD+PL +D YDR+ L L+E+ P L P VG
Sbjct: 22 HNYYYYVLDDPLISDVEYDRMLAELKDLEEKHPGLKHSGSPTMKVG 67
>gi|160940658|ref|ZP_02088001.1| hypothetical protein CLOBOL_05552 [Clostridium bolteae ATCC
BAA-613]
gi|158436393|gb|EDP14160.1| hypothetical protein CLOBOL_05552 [Clostridium bolteae ATCC
BAA-613]
Length = 699
Score = 38.5 bits (88), Expect = 0.30, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 4/90 (4%)
Query: 30 LEAKFLPNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGL 89
L F NK+ +E+ + K + LS + I + +LVK ++ YY ++ P +D +
Sbjct: 10 LSNTFNDNKKIMEAHM-KQNQNEHLS--QEAIRIHHLVKQLNQYRHEYYNMNAPSVSDAV 66
Query: 90 YDRVSERLDALQEQFPELFDEDHPWNTVGY 119
YD + + LDAL+++ + + P TVGY
Sbjct: 67 YDCLFDELDALEKR-TGIILSNSPTQTVGY 95
>gi|110597868|ref|ZP_01386151.1| DNA ligase, NAD-dependent [Chlorobium ferrooxidans DSM 13031]
gi|110340593|gb|EAT59076.1| DNA ligase, NAD-dependent [Chlorobium ferrooxidans DSM 13031]
Length = 674
Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H + YY+ P +D +D + E+L AL++QFP+L D P VG
Sbjct: 20 RHNRLYYQEAKPEISDYDFDLLLEQLVALEQQFPDLVTPDSPSQRVG 66
>gi|319426762|gb|ADV54836.1| DNA ligase, NAD-dependent [Shewanella putrefaciens 200]
Length = 685
Score = 38.5 bits (88), Expect = 0.30, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 23/46 (50%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY D P TD YDR+ + L L+ QFP+ D P VG
Sbjct: 33 HNIRYYVDDAPSITDSEYDRLMQCLIKLEAQFPQFIVADSPTQRVG 78
>gi|114797923|ref|YP_759116.1| DNA ligase, NAD-dependent [Hyphomonas neptunium ATCC 15444]
gi|122942770|sp|Q0C577|DNLJ_HYPNA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|114738097|gb|ABI76222.1| DNA ligase, NAD-dependent [Hyphomonas neptunium ATCC 15444]
Length = 701
Score = 38.5 bits (88), Expect = 0.30, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY+ D P TD YD + +R A++ +FP L ED P + VG
Sbjct: 33 YYQNDAPELTDADYDALRQRNLAIEARFPALKREDSPTDRVG 74
>gi|303232470|ref|ZP_07319159.1| DNA ligase (NAD+) [Atopobium vaginae PB189-T1-4]
gi|302481435|gb|EFL44506.1| DNA ligase (NAD+) [Atopobium vaginae PB189-T1-4]
Length = 836
Score = 38.5 bits (88), Expect = 0.31, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
A + V L ++ +H YY LD+PL +D +D + L AL++ PEL
Sbjct: 96 AALRVPELRRLLTYHAWRYYALDDPLISDAQFDAYLQELIALEQAHPEL 144
>gi|154507531|ref|ZP_02043173.1| hypothetical protein ACTODO_00010 [Actinomyces odontolyticus ATCC
17982]
gi|153799320|gb|EDN81740.1| hypothetical protein ACTODO_00010 [Actinomyces odontolyticus ATCC
17982]
Length = 777
Score = 38.5 bits (88), Expect = 0.31, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY D+P D YDR+ ++ ++E++P+L D P +VG
Sbjct: 30 YYDRDSPTLADADYDRMYREVEEIEERYPQLRGADSPTMSVG 71
>gi|327438552|dbj|BAK14917.1| NAD-dependent DNA ligase [Solibacillus silvestris StLB046]
Length = 665
Score = 38.5 bits (88), Expect = 0.31, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P+ D +YD++ L AL+E PE D P VG
Sbjct: 22 YYVLDKPVVEDSVYDQLLHELIALEEANPEFIYPDSPTQRVG 63
>gi|327402054|ref|YP_004342892.1| DNA ligase [Fluviicola taffensis DSM 16823]
gi|327317562|gb|AEA42054.1| DNA ligase [Fluviicola taffensis DSM 16823]
Length = 670
Score = 38.5 bits (88), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
EA +++E L K H YY NP +D +D + + L L+ QFPEL + P V
Sbjct: 5 EAQLKIEQLTKELTLHNHNYYVESNPTISDYEFDVLLKELQDLETQFPELASDLSPTKRV 64
Query: 118 G 118
G
Sbjct: 65 G 65
>gi|269123713|ref|YP_003306290.1| DNA ligase, NAD-dependent [Streptobacillus moniliformis DSM 12112]
gi|268315039|gb|ACZ01413.1| DNA ligase, NAD-dependent [Streptobacillus moniliformis DSM 12112]
Length = 675
Score = 38.5 bits (88), Expect = 0.31, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 67 VKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++I HH YY LD L TD YD + ++++ L+++FPEL ++ P +G
Sbjct: 23 IEIYNHH---YYNLDESLITDREYDALLKKIELLEKEFPELKLKNSPTEIIG 71
>gi|312888786|ref|ZP_07748349.1| DNA ligase, NAD-dependent [Mucilaginibacter paludis DSM 18603]
gi|311298661|gb|EFQ75767.1| DNA ligase, NAD-dependent [Mucilaginibacter paludis DSM 18603]
Length = 675
Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+S EA ++ L H YY L P +D +D+ E L AL++QFPE + D P
Sbjct: 1 MSPTEAKNKIHTLSAELKQHNYNYYVLAMPTISDFDFDKKLEELAALEKQFPEFAEPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQQVG 65
>gi|77463176|ref|YP_352680.1| DNA ligase [Rhodobacter sphaeroides 2.4.1]
gi|123730578|sp|Q3J355|DNLJ_RHOS4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|77387594|gb|ABA78779.1| DNA ligase [Rhodobacter sphaeroides 2.4.1]
Length = 704
Score = 38.5 bits (88), Expect = 0.32, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
Y+ D P +D YD + R A++EQFPEL D P + VG
Sbjct: 33 YHTHDAPQISDADYDALKVRNRAIEEQFPELRRSDSPSDRVG 74
>gi|82523684|emb|CAI78466.1| NAD-dependent DNA ligase [uncultured candidate division WS3
bacterium]
Length = 667
Score = 38.5 bits (88), Expect = 0.32, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 26/55 (47%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
A V L ++ HH + YY P DG YD + L AL+ + PEL D P
Sbjct: 7 ARARVAELRELIRHHDRKYYVDAAPEIADGEYDALMSELAALEREHPELVTADSP 61
>gi|88658391|ref|YP_507122.1| DNA ligase, NAD-dependent [Ehrlichia chaffeensis str. Arkansas]
gi|123763773|sp|Q2GHG1|DNLJ_EHRCR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|88599848|gb|ABD45317.1| DNA ligase, NAD-dependent [Ehrlichia chaffeensis str. Arkansas]
Length = 676
Score = 38.5 bits (88), Expect = 0.33, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+A +E++ L K HH YY DNP +D YD + + + + FP+L + N +
Sbjct: 6 KAKLELDKLNKQIQHHDVLYYVQDNPEISDAEYDELCRKRNLILNAFPKLTQSNDYQNNI 65
Query: 118 G 118
G
Sbjct: 66 G 66
>gi|148982028|ref|ZP_01816589.1| NAD-dependent DNA ligase LigA [Vibrionales bacterium SWAT-3]
gi|145960667|gb|EDK26012.1| NAD-dependent DNA ligase LigA [Vibrionales bacterium SWAT-3]
Length = 670
Score = 38.5 bits (88), Expect = 0.33, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
K + +E L + +H YY D+P D YDR+ ++L ++E+ PEL D P
Sbjct: 2 KESIQVTLEQLRETLHYHAVRYYVEDSPEIPDVEYDRLMQQLLKIEEENPELVTVDSPSQ 61
Query: 116 TVG 118
VG
Sbjct: 62 RVG 64
>gi|84393803|ref|ZP_00992550.1| DNA ligase [Vibrio splendidus 12B01]
gi|84375600|gb|EAP92500.1| DNA ligase [Vibrio splendidus 12B01]
Length = 670
Score = 38.5 bits (88), Expect = 0.33, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
K + +E L + +H YY D+P D YDR+ ++L ++E+ PEL D P
Sbjct: 2 KESIQVTLEQLRETLHYHAVRYYVEDSPEIPDVEYDRLMQQLLKIEEENPELVTVDSPSQ 61
Query: 116 TVG 118
VG
Sbjct: 62 RVG 64
>gi|332970926|gb|EGK09901.1| NAD-dependent DNA ligase LigA [Kingella kingae ATCC 23330]
Length = 785
Score = 38.5 bits (88), Expect = 0.33, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 32/65 (49%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+S + ++++L +I + YY LD P D YD++ L+ L+ FP + P
Sbjct: 1 MSNTQIQNQIKHLTEILNRYAHEYYTLDAPSVPDSEYDKLYRELEQLERDFPYFRLPESP 60
Query: 114 WNTVG 118
N VG
Sbjct: 61 TNRVG 65
>gi|76801093|ref|YP_326101.1| NAD-dependent DNA ligase LigA [Natronomonas pharaonis DSM 2160]
gi|121729348|sp|Q3ITK1|DNLJ_NATPD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|76556958|emb|CAI48532.1| DNA ligase (NAD) [Natronomonas pharaonis DSM 2160]
Length = 691
Score = 38.5 bits (88), Expect = 0.34, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
V L A +VE L + H YY+L +P+ +D YD++ ERL+ L+ +F
Sbjct: 20 VDELDAASATRQVETLREAIRFHDYRYYQLADPVISDRAYDQLFERLERLESKF 73
>gi|16329180|ref|NP_439908.1| NAD-dependent DNA ligase LigA [Synechocystis sp. PCC 6803]
gi|7674015|sp|P72588|DNLJ_SYNY3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|1651660|dbj|BAA16588.1| DNA ligase [Synechocystis sp. PCC 6803]
Length = 669
Score = 38.5 bits (88), Expect = 0.34, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P+ D +YD++ L L+ + PEL D P VG
Sbjct: 21 YYVLDAPVMEDSVYDQLYRELQRLEAENPELITPDSPTQRVG 62
>gi|261380488|ref|ZP_05985061.1| DNA ligase, NAD-dependent [Neisseria subflava NJ9703]
gi|284796739|gb|EFC52086.1| DNA ligase, NAD-dependent [Neisseria subflava NJ9703]
Length = 822
Score = 38.5 bits (88), Expect = 0.34, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 28/56 (50%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++YL + + YY LD P D YD++ L+AL+ PEL D P VG
Sbjct: 8 IKYLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALELNHPELKLPDSPTQRVG 63
>gi|37520296|ref|NP_923673.1| NAD-dependent DNA ligase LigA [Gloeobacter violaceus PCC 7421]
gi|81710991|sp|Q7NMN8|DNLJ_GLOVI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|35211289|dbj|BAC88668.1| DNA ligase [Gloeobacter violaceus PCC 7421]
Length = 668
Score = 38.5 bits (88), Expect = 0.34, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 70 ALHHQKW---YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
AL H +W YY LD P +D +YD+ L L+ ++PEL D P VG
Sbjct: 18 ALLH-RWGYAYYVLDAPEVSDAIYDQHYRELVDLESRYPELVSPDSPTRRVG 68
>gi|302037359|ref|YP_003797681.1| DNA ligase (NAD(+)) [Candidatus Nitrospira defluvii]
gi|300605423|emb|CBK41756.1| DNA ligase (NAD(+)) [Candidatus Nitrospira defluvii]
Length = 675
Score = 38.5 bits (88), Expect = 0.35, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 22/47 (46%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH YY D P +D YDR+ L L+ P+L D P VG
Sbjct: 24 HHDHLYYTKDRPEISDAEYDRLFRELVDLETAHPDLVTGDSPTQRVG 70
>gi|259416760|ref|ZP_05740680.1| DNA ligase, NAD-dependent [Silicibacter sp. TrichCH4B]
gi|259348199|gb|EEW59976.1| DNA ligase, NAD-dependent [Silicibacter sp. TrichCH4B]
Length = 739
Score = 38.5 bits (88), Expect = 0.35, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
Y++ D P +D YDR+ R AL E FPEL +E +VG
Sbjct: 24 YHQKDAPTLSDAEYDRLKRRYLALAEAFPELAEEGTRVESVG 65
>gi|126649600|ref|ZP_01721841.1| NAD-dependent DNA ligase LigA [Bacillus sp. B14905]
gi|126593925|gb|EAZ87848.1| NAD-dependent DNA ligase LigA [Bacillus sp. B14905]
Length = 667
Score = 38.5 bits (88), Expect = 0.35, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P+ D +YD++ L AL+E P L D P VG
Sbjct: 22 YYVLDKPVVADSVYDQLLHELIALEEANPSLIFPDSPTQRVG 63
>gi|288927843|ref|ZP_06421690.1| DNA ligase, NAD-dependent [Prevotella sp. oral taxon 317 str.
F0108]
gi|288330677|gb|EFC69261.1| DNA ligase, NAD-dependent [Prevotella sp. oral taxon 317 str.
F0108]
Length = 665
Score = 38.5 bits (88), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH YY ++P +D +DR+ L L+ + PE++D + P VG
Sbjct: 16 HHNYLYYVQNSPTLSDQEFDRLMRELQDLEAKHPEVYDPNSPTQRVG 62
>gi|260219439|emb|CBA26284.1| DNA ligase [Curvibacter putative symbiont of Hydra magnipapillata]
Length = 696
Score = 38.5 bits (88), Expect = 0.35, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 21/42 (50%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD PL D YDR+ L L+ Q PE D P VG
Sbjct: 36 YYVLDAPLVPDVEYDRLFRELQDLEAQHPEWVTPDSPTQRVG 77
>gi|167647059|ref|YP_001684722.1| NAD-dependent DNA ligase [Caulobacter sp. K31]
gi|190359242|sp|B0T1N5|DNLJ_CAUSK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|167349489|gb|ABZ72224.1| DNA ligase, NAD-dependent [Caulobacter sp. K31]
Length = 792
Score = 38.5 bits (88), Expect = 0.35, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V L++ +A E+E L H Y++ D P +D YD + R ++++FP L +
Sbjct: 6 VADLTEAQAAEELERLADDLAAHDLRYHQQDAPTISDAEYDALKRRNLDIEDRFPHLVRD 65
Query: 111 DHPWNTVG 118
+ P VG
Sbjct: 66 NSPSMRVG 73
>gi|15613212|ref|NP_241515.1| NAD-dependent DNA ligase LigA [Bacillus halodurans C-125]
gi|15213980|sp|Q9KF37|DNLJ_BACHD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|10173263|dbj|BAB04368.1| DNA ligase (polydeoxyribonucleotide synthase (NAD+)) [Bacillus
halodurans C-125]
Length = 669
Score = 38.1 bits (87), Expect = 0.35, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 32/65 (49%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + +A ++E L + YY LD PL +D YD + L L+E FPEL + P
Sbjct: 1 MERNDAERKIEKLRNQLEEYGYHYYVLDKPLVSDAEYDGLMNELIELEEAFPELKSDTSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SVRVG 65
>gi|256380031|ref|YP_003103691.1| DNA ligase, NAD-dependent [Actinosynnema mirum DSM 43827]
gi|255924334|gb|ACU39845.1| DNA ligase, NAD-dependent [Actinosynnema mirum DSM 43827]
Length = 816
Score = 38.1 bits (87), Expect = 0.36, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HQ YY LD P +DG +D + L +L++ P L D P VG
Sbjct: 60 HQFRYYVLDAPTISDGEFDALLRELQSLEDAHPGLATPDSPTQQVG 105
>gi|169825829|ref|YP_001695987.1| DNA ligase [Lysinibacillus sphaericus C3-41]
gi|254781361|sp|B1HTW6|DNLJ_LYSSC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|168990317|gb|ACA37857.1| DNA ligase [Lysinibacillus sphaericus C3-41]
Length = 667
Score = 38.1 bits (87), Expect = 0.36, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P+ D +YD++ L AL+E P L D P VG
Sbjct: 22 YYVLDKPVVADSVYDQLLHELIALEEANPSLIFPDSPTQRVG 63
>gi|146168649|ref|XP_001471359.1| hypothetical protein TTHERM_00490927 [Tetrahymena thermophila]
gi|146145195|gb|EDK31677.1| hypothetical protein TTHERM_00490927 [Tetrahymena thermophila
SB210]
Length = 704
Score = 38.1 bits (87), Expect = 0.36, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 2/99 (2%)
Query: 8 FRSSKFENEHNITPAQWKKLLTLEAKFLPNKRALESWLDKAKKVTSLSKGEAM-IEVEYL 66
FR F +++NI+ Q + + FL K+ L + + K+VT+++KG + +E +Y
Sbjct: 200 FRIKLFASQYNISSQQNQVSYRNQFIFLNPKQTLLTTISAQKQVTTVNKGFLIQVESKYS 259
Query: 67 VKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFP 105
I + Q Y LDN + Y +V E + ++ QFP
Sbjct: 260 FPIQFNQQNQSYELDNKPLSQVSY-QVDEVIQYIEIQFP 297
>gi|94497003|ref|ZP_01303577.1| DNA ligase, NAD-dependent [Sphingomonas sp. SKA58]
gi|94423679|gb|EAT08706.1| DNA ligase, NAD-dependent [Sphingomonas sp. SKA58]
Length = 703
Score = 38.1 bits (87), Expect = 0.36, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 30/65 (46%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
L++ EA + L K H + Y+ D P +D YD + +AL+ FP L D P
Sbjct: 7 LTEAEAANRLMRLAKEVAKHNRLYHDQDAPEISDADYDALIRENNALEAAFPHLIRADSP 66
Query: 114 WNTVG 118
VG
Sbjct: 67 NAQVG 71
>gi|296110658|ref|YP_003621039.1| NAD-dependent DNA ligase [Leuconostoc kimchii IMSNU 11154]
gi|295832189|gb|ADG40070.1| NAD-dependent DNA ligase [Leuconostoc kimchii IMSNU 11154]
Length = 681
Score = 38.1 bits (87), Expect = 0.36, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 31/68 (45%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
+ L+ A E+ + L + YY D PL D +YD + RL L+ FP+ +
Sbjct: 8 IEQLTTPMAQQEIANHQETLLQYGVAYYEQDAPLVEDYVYDALYARLVELEAAFPQFINP 67
Query: 111 DHPWNTVG 118
D P VG
Sbjct: 68 DSPTQKVG 75
>gi|317132010|ref|YP_004091324.1| DNA ligase, NAD-dependent [Ethanoligenens harbinense YUAN-3]
gi|315469989|gb|ADU26593.1| DNA ligase, NAD-dependent [Ethanoligenens harbinense YUAN-3]
Length = 661
Score = 38.1 bits (87), Expect = 0.36, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 27/61 (44%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+A + L K H YY LD P D YDR+ L+ L+ PE+ D P V
Sbjct: 2 DAAARAKELRKALSRHNYLYYVLDAPEIEDFEYDRMLRELEELEAAHPEIVTPDSPTQRV 61
Query: 118 G 118
G
Sbjct: 62 G 62
>gi|332558050|ref|ZP_08412372.1| DNA ligase [Rhodobacter sphaeroides WS8N]
gi|332275762|gb|EGJ21077.1| DNA ligase [Rhodobacter sphaeroides WS8N]
Length = 704
Score = 38.1 bits (87), Expect = 0.37, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
Y+ D P +D YD + R A++EQFPEL D P + VG
Sbjct: 33 YHTHDAPQISDADYDALKLRNRAIEEQFPELRRSDSPSDRVG 74
>gi|241759788|ref|ZP_04757888.1| DNA ligase, NAD-dependent [Neisseria flavescens SK114]
gi|241319796|gb|EER56192.1| DNA ligase, NAD-dependent [Neisseria flavescens SK114]
Length = 859
Score = 38.1 bits (87), Expect = 0.37, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 28/56 (50%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++YL + + YY LD P D YD++ L+AL+ PEL D P VG
Sbjct: 45 IKYLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALELNHPELKLPDSPTQRVG 100
>gi|88608555|ref|YP_506384.1| DNA ligase, NAD-dependent [Neorickettsia sennetsu str. Miyayama]
gi|123736355|sp|Q2GDR2|DNLJ_NEOSM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|88600724|gb|ABD46192.1| DNA ligase, NAD-dependent [Neorickettsia sennetsu str. Miyayama]
Length = 670
Score = 38.1 bits (87), Expect = 0.37, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 27/50 (54%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
EA E++ L + L H K YY+ D+P TD YD + +R L E P L
Sbjct: 2 EAKKEIQELYEKLLRHNKKYYQDDSPEITDAEYDSIKDRYLKLLEANPSL 51
>gi|116071920|ref|ZP_01469188.1| DNA ligase [Synechococcus sp. BL107]
gi|116065543|gb|EAU71301.1| DNA ligase [Synechococcus sp. BL107]
Length = 682
Score = 38.1 bits (87), Expect = 0.37, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
+ E E+ L+ A H YY LD P D +YDR+ L L++ P L D P
Sbjct: 4 QSERASELRNLLNTAAHA---YYVLDTPTMEDAVYDRLYRELLELEQTTPSLKTADSPTQ 60
Query: 116 TVG 118
VG
Sbjct: 61 RVG 63
>gi|237747723|ref|ZP_04578203.1| DNA ligase [Oxalobacter formigenes OXCC13]
gi|229379085|gb|EEO29176.1| DNA ligase [Oxalobacter formigenes OXCC13]
Length = 685
Score = 38.1 bits (87), Expect = 0.37, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P+ D YDR+ +L L++ PEL D P VG
Sbjct: 33 YYVLDAPIVPDSEYDRLFRQLQELEKAHPELVVPDSPTQRVG 74
>gi|190575033|ref|YP_001972878.1| NAD-dependent DNA ligase LigA [Stenotrophomonas maltophilia K279a]
gi|254781423|sp|B2FKJ1|DNLJ_STRMK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|190012955|emb|CAQ46587.1| putative DNA ligase [Stenotrophomonas maltophilia K279a]
Length = 821
Score = 38.1 bits (87), Expect = 0.37, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
Y+ LD P D YDR+ L+AL+ + PEL D P VG
Sbjct: 23 YHELDAPEIPDVDYDRMVRELEALEREHPELARADSPTQQVG 64
>gi|11967289|gb|AAG42042.1| NAD-dependent DNA ligase [Aquifex pyrophilus]
Length = 719
Score = 38.1 bits (87), Expect = 0.37, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 35/74 (47%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
L++ K + LS EA E L ++ H YY +P+ +D YDR+ L ++ +F
Sbjct: 18 LERIKSLKDLSLEEAKRLAEELKEVIRFHDYKYYVQASPVISDYDYDRLFRALKEIERKF 77
Query: 105 PELFDEDHPWNTVG 118
P+ D P V
Sbjct: 78 PQFITPDSPTQRVA 91
>gi|293603951|ref|ZP_06686365.1| NAD-dependent DNA ligase LigA [Achromobacter piechaudii ATCC 43553]
gi|292817644|gb|EFF76711.1| NAD-dependent DNA ligase LigA [Achromobacter piechaudii ATCC 43553]
Length = 700
Score = 38.1 bits (87), Expect = 0.38, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY D P +D YD + +L+AL+ + PEL + P VG
Sbjct: 23 QHNVRYYVYDEPSISDAEYDGLMRQLEALEAEHPELITPESPTQRVG 69
>gi|153001196|ref|YP_001366877.1| DNA ligase, NAD-dependent [Shewanella baltica OS185]
gi|166216241|sp|A6WPS5|DNLJ_SHEB8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|151365814|gb|ABS08814.1| DNA ligase, NAD-dependent [Shewanella baltica OS185]
Length = 685
Score = 38.1 bits (87), Expect = 0.38, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 23/46 (50%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY D P TD YDR+ +RL L+ +P L D P VG
Sbjct: 33 HNIRYYVDDAPSITDSEYDRLMQRLLKLEALYPHLIVADSPTQRVG 78
>gi|329121050|ref|ZP_08249681.1| NAD-dependent DNA ligase LigA [Dialister micraerophilus DSM 19965]
gi|327471212|gb|EGF16666.1| NAD-dependent DNA ligase LigA [Dialister micraerophilus DSM 19965]
Length = 666
Score = 38.1 bits (87), Expect = 0.38, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 32/61 (52%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E + +V+ L + +H YY LD P +D +D++ L + ++PEL +D P V
Sbjct: 5 EIISKVKKLREELRYHSYLYYVLDKPEISDFEFDKMYRELVDFESKYPELITQDSPTQRV 64
Query: 118 G 118
G
Sbjct: 65 G 65
>gi|325129804|gb|EGC52612.1| DNA ligase, NAD-dependent [Neisseria meningitidis OX99.30304]
Length = 841
Score = 38.1 bits (87), Expect = 0.38, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 36/83 (43%)
Query: 36 PNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSE 95
PN + + + K S K A + +L + + YY LD P D YD++
Sbjct: 3 PNSKHNTNLTNLLKPSDSDIKQFAAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFR 62
Query: 96 RLDALQEQFPELFDEDHPWNTVG 118
L+AL+ PEL D P VG
Sbjct: 63 ELEALERNHPELKLPDSPTQRVG 85
>gi|194366356|ref|YP_002028966.1| NAD-dependent DNA ligase LigA [Stenotrophomonas maltophilia R551-3]
gi|254781422|sp|B4SP88|DNLJ_STRM5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|194349160|gb|ACF52283.1| DNA ligase, NAD-dependent [Stenotrophomonas maltophilia R551-3]
Length = 821
Score = 38.1 bits (87), Expect = 0.38, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
Y+ LD P D YDR+ L+AL+ + PEL D P VG
Sbjct: 23 YHELDAPEIPDVDYDRMVRELEALEREHPELARADSPTQQVG 64
>gi|330752433|emb|CBL87383.1| DNA ligase [uncultured Flavobacteria bacterium]
Length = 663
Score = 38.1 bits (87), Expect = 0.38, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY LD P +D +D ++L L+ Q+PEL D + P VG
Sbjct: 17 HNHNYYVLDTPTISDFEFDIKLKKLQVLESQYPELSDPNSPTMRVG 62
>gi|325135742|gb|EGC58354.1| DNA ligase, NAD-dependent [Neisseria meningitidis M0579]
Length = 841
Score = 38.1 bits (87), Expect = 0.38, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 36/83 (43%)
Query: 36 PNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSE 95
PN + + + K S K A + +L + + YY LD P D YD++
Sbjct: 3 PNSKHNTNLTNLLKPSDSDIKQFAAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFR 62
Query: 96 RLDALQEQFPELFDEDHPWNTVG 118
L+AL+ PEL D P VG
Sbjct: 63 ELEALERNHPELKLPDSPTQRVG 85
>gi|254776288|ref|ZP_05217804.1| NAD-dependent DNA ligase LigA [Mycobacterium avium subsp. avium
ATCC 25291]
Length = 681
Score = 38.1 bits (87), Expect = 0.38, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 27/53 (50%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L + HQ YY D P+ +D +D + L AL+E+ PEL D P VG
Sbjct: 8 LAETVREHQFRYYIKDAPIISDAEFDALFNELLALEERHPELRVADSPTQLVG 60
>gi|254523079|ref|ZP_05135134.1| DNA ligase, NAD-dependent [Stenotrophomonas sp. SKA14]
gi|219720670|gb|EED39195.1| DNA ligase, NAD-dependent [Stenotrophomonas sp. SKA14]
Length = 821
Score = 38.1 bits (87), Expect = 0.38, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
Y+ LD P D YDR+ L+AL+ + PEL D P VG
Sbjct: 23 YHELDAPEIPDVDYDRMVRELEALEREHPELARADSPTQQVG 64
>gi|217972882|ref|YP_002357633.1| DNA ligase, NAD-dependent [Shewanella baltica OS223]
gi|254781416|sp|B8EEK5|DNLJ_SHEB2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|217498017|gb|ACK46210.1| DNA ligase, NAD-dependent [Shewanella baltica OS223]
Length = 685
Score = 38.1 bits (87), Expect = 0.38, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 23/46 (50%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY D P TD YDR+ +RL L+ +P L D P VG
Sbjct: 33 HNIRYYVDDAPSITDSEYDRLMQRLLKLEALYPHLIVADSPTQRVG 78
>gi|118465270|ref|YP_883031.1| NAD-dependent DNA ligase LigA [Mycobacterium avium 104]
gi|166215821|sp|A0QJE3|DNLJ_MYCA1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|118166557|gb|ABK67454.1| DNA ligase, NAD-dependent [Mycobacterium avium 104]
Length = 693
Score = 38.1 bits (87), Expect = 0.38, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 27/53 (50%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L + HQ YY D P+ +D +D + L AL+E+ PEL D P VG
Sbjct: 20 LAETVREHQFRYYIKDAPIISDAEFDALFNELLALEERHPELRVADSPTQLVG 72
>gi|160875869|ref|YP_001555185.1| DNA ligase, NAD-dependent [Shewanella baltica OS195]
gi|190359285|sp|A9L5Z1|DNLJ_SHEB9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|160861391|gb|ABX49925.1| DNA ligase, NAD-dependent [Shewanella baltica OS195]
gi|315268060|gb|ADT94913.1| DNA ligase, NAD-dependent [Shewanella baltica OS678]
Length = 685
Score = 38.1 bits (87), Expect = 0.38, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 23/46 (50%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY D P TD YDR+ +RL L+ +P L D P VG
Sbjct: 33 HNIRYYVDDAPSITDSEYDRLMQRLLKLEALYPHLIVADSPTQRVG 78
>gi|304411949|ref|ZP_07393560.1| DNA ligase, NAD-dependent [Shewanella baltica OS183]
gi|307303283|ref|ZP_07583038.1| DNA ligase, NAD-dependent [Shewanella baltica BA175]
gi|304349809|gb|EFM14216.1| DNA ligase, NAD-dependent [Shewanella baltica OS183]
gi|306913643|gb|EFN44065.1| DNA ligase, NAD-dependent [Shewanella baltica BA175]
Length = 685
Score = 38.1 bits (87), Expect = 0.39, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 23/46 (50%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY D P TD YDR+ +RL L+ +P L D P VG
Sbjct: 33 HNIRYYVDDAPSITDSEYDRLMQRLLKLEALYPHLIVADSPTQRVG 78
>gi|291544905|emb|CBL18014.1| DNA ligase, NAD-dependent [Ruminococcus sp. 18P13]
Length = 660
Score = 38.1 bits (87), Expect = 0.39, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 28/61 (45%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+A + + L K H YY LD P D YD + L A++ ++P+L P V
Sbjct: 5 QAKLRLAQLTKEIEQHNYAYYVLDAPTIEDCDYDALMRELKAIETEYPQLLSPHSPSQRV 64
Query: 118 G 118
G
Sbjct: 65 G 65
>gi|329120426|ref|ZP_08249092.1| NAD-dependent DNA ligase LigA [Neisseria bacilliformis ATCC
BAA-1200]
gi|327462110|gb|EGF08438.1| NAD-dependent DNA ligase LigA [Neisseria bacilliformis ATCC
BAA-1200]
Length = 887
Score = 38.1 bits (87), Expect = 0.39, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 22/42 (52%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ L+AL+ PEL D P VG
Sbjct: 85 YYTLDAPSVPDAEYDRLFRELEALEAAHPELKLPDSPTQRVG 126
>gi|308061946|gb|ADO03834.1| NAD-dependent DNA ligase LigA [Helicobacter pylori Cuz20]
Length = 656
Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S+ E + +EYL ++ HH YY LD+ + +D +YD + + L A +E+ P + P
Sbjct: 4 SQKEYLERIEYLNTLS-HH---YYNLDDSIVSDAVYDELYQELKAYEEKNPNSIQANSPT 59
Query: 115 NTVG 118
VG
Sbjct: 60 QKVG 63
>gi|317051097|ref|YP_004112213.1| DNA ligase, NAD-dependent [Desulfurispirillum indicum S5]
gi|316946181|gb|ADU65657.1| DNA ligase, NAD-dependent [Desulfurispirillum indicum S5]
Length = 660
Score = 38.1 bits (87), Expect = 0.39, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY L +P+ DG YD + L AL+ +FP+ D P +G
Sbjct: 23 YYTLADPIMGDGEYDGLYRELRALEARFPQYVHADSPTRRIG 64
>gi|121634462|ref|YP_974707.1| DNA ligase [Neisseria meningitidis FAM18]
gi|166216218|sp|A1KSS7|DNLJ_NEIMF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|120866168|emb|CAM09908.1| putative DNA ligase [Neisseria meningitidis FAM18]
Length = 841
Score = 38.1 bits (87), Expect = 0.40, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 37/83 (44%)
Query: 36 PNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSE 95
PN + ++ + K S K A + +L + + YY LD P D YD++
Sbjct: 3 PNSKHNTNFTNLLKPSDSDIKQFAAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFR 62
Query: 96 RLDALQEQFPELFDEDHPWNTVG 118
L+AL+ PEL D P VG
Sbjct: 63 ELEALELNHPELKLPDSPTQRVG 85
>gi|325137931|gb|EGC60506.1| DNA ligase, NAD-dependent [Neisseria meningitidis ES14902]
Length = 841
Score = 38.1 bits (87), Expect = 0.40, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 37/83 (44%)
Query: 36 PNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSE 95
PN + ++ + K S K A + +L + + YY LD P D YD++
Sbjct: 3 PNSKHNTNFTNLLKPSDSDIKQFAAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFR 62
Query: 96 RLDALQEQFPELFDEDHPWNTVG 118
L+AL+ PEL D P VG
Sbjct: 63 ELEALELNHPELKLPDSPTQRVG 85
>gi|77919807|ref|YP_357622.1| DNA ligase, NAD-dependent [Pelobacter carbinolicus DSM 2380]
gi|123756590|sp|Q3A2F5|DNLJ_PELCD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|77545890|gb|ABA89452.1| DNA ligase, NAD-dependent [Pelobacter carbinolicus DSM 2380]
Length = 671
Score = 38.1 bits (87), Expect = 0.40, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 71 LH-HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LH H + YY D P TD YDR+ L L++ +PEL P VG
Sbjct: 17 LHRHSRLYYTYDRPEITDAEYDRLFRELLELEKAYPELVTAASPSLRVG 65
>gi|303247047|ref|ZP_07333322.1| DNA ligase, NAD-dependent [Desulfovibrio fructosovorans JJ]
gi|302491473|gb|EFL51358.1| DNA ligase, NAD-dependent [Desulfovibrio fructosovorans JJ]
Length = 693
Score = 38.1 bits (87), Expect = 0.41, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 23/46 (50%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY LD+P+ D YD + L L+ PEL D + P VG
Sbjct: 21 HDYRYYVLDDPVIEDAAYDALYRELRKLETAHPELDDPNSPTKRVG 66
>gi|219850499|ref|YP_002464932.1| DNA ligase, NAD-dependent [Chloroflexus aggregans DSM 9485]
gi|254781282|sp|B8GAC1|DNLJ_CHLAD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|219544758|gb|ACL26496.1| DNA ligase, NAD-dependent [Chloroflexus aggregans DSM 9485]
Length = 681
Score = 38.1 bits (87), Expect = 0.41, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E+ L++ +H YY LD+P+ +D YD + L AL+ PEL D P V
Sbjct: 12 ELRTLIRRYDYH---YYVLDDPIVSDAEYDALMNELRALEAAHPELITPDSPTQRV 64
>gi|117927902|ref|YP_872453.1| DNA ligase, NAD-dependent [Acidothermus cellulolyticus 11B]
gi|166215382|sp|A0LSQ7|DNLJ_ACIC1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|117648365|gb|ABK52467.1| DNA ligase, NAD-dependent [Acidothermus cellulolyticus 11B]
Length = 695
Score = 38.1 bits (87), Expect = 0.41, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 25/52 (48%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
LVK H YY LD P +D YD + L+ ++ +PEL D P V
Sbjct: 23 LVKEIEEHAYRYYVLDAPTISDAEYDALMRELEEIENAYPELRTPDSPTQKV 74
>gi|325203753|gb|ADY99206.1| DNA ligase, NAD-dependent [Neisseria meningitidis M01-240355]
Length = 841
Score = 38.1 bits (87), Expect = 0.41, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 37/83 (44%)
Query: 36 PNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSE 95
PN + ++ + K S K A + +L + + YY LD P D YD++
Sbjct: 3 PNSKHNTNFTNLLKPSDSDIKQFAAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFR 62
Query: 96 RLDALQEQFPELFDEDHPWNTVG 118
L+AL+ PEL D P VG
Sbjct: 63 ELEALELNHPELKLPDSPTQRVG 85
>gi|295135415|ref|YP_003586091.1| DNA ligase [Zunongwangia profunda SM-A87]
gi|294983430|gb|ADF53895.1| DNA ligase [Zunongwangia profunda SM-A87]
Length = 812
Score = 38.1 bits (87), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH YY LDNP +D +D + L L+E+ PE D + P VG
Sbjct: 16 HHNYQYYVLDNPEISDYDFDMKLKELQELEEKHPEFNDPNSPTQRVG 62
>gi|325131881|gb|EGC54581.1| DNA ligase, NAD-dependent [Neisseria meningitidis M6190]
Length = 841
Score = 38.1 bits (87), Expect = 0.41, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 37/83 (44%)
Query: 36 PNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSE 95
PN + ++ + K S K A + +L + + YY LD P D YD++
Sbjct: 3 PNSKHNTNFTNLLKPSDSDIKQFAAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFR 62
Query: 96 RLDALQEQFPELFDEDHPWNTVG 118
L+AL+ PEL D P VG
Sbjct: 63 ELEALELNHPELKLPDSPTQRVG 85
>gi|308388851|gb|ADO31171.1| DNA ligase [Neisseria meningitidis alpha710]
gi|325202538|gb|ADY97992.1| DNA ligase, NAD-dependent [Neisseria meningitidis M01-240149]
gi|325207712|gb|ADZ03164.1| DNA ligase, NAD-dependent [Neisseria meningitidis NZ-05/33]
Length = 841
Score = 38.1 bits (87), Expect = 0.41, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 37/83 (44%)
Query: 36 PNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSE 95
PN + ++ + K S K A + +L + + YY LD P D YD++
Sbjct: 3 PNSKHNTNFTNLLKPSDSDIKQFAAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFR 62
Query: 96 RLDALQEQFPELFDEDHPWNTVG 118
L+AL+ PEL D P VG
Sbjct: 63 ELEALELNHPELKLPDSPTQRVG 85
>gi|254820448|ref|ZP_05225449.1| NAD-dependent DNA ligase LigA [Mycobacterium intracellulare ATCC
13950]
Length = 693
Score = 38.1 bits (87), Expect = 0.41, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 27/53 (50%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L + HQ YY D P+ +D +D + L AL+E+ PEL D P VG
Sbjct: 20 LAEAVREHQFRYYIKDAPIISDAEFDSMFNELLALEERHPELRVADSPTQLVG 72
>gi|226325717|ref|ZP_03801235.1| hypothetical protein COPCOM_03530 [Coprococcus comes ATCC 27758]
gi|225205841|gb|EEG88195.1| hypothetical protein COPCOM_03530 [Coprococcus comes ATCC 27758]
Length = 687
Score = 38.1 bits (87), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 52 TSLSKGEAMI--EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
T KG++M ++ LVK ++ YY D PL +D YDR+ + L L+EQ +
Sbjct: 19 TPQKKGDSMSVKRIKNLVKQLNEYRHAYYNQDAPLVSDAEYDRLFDELKELEEQTGFIL- 77
Query: 110 EDHPWNTVGY 119
+ P TVGY
Sbjct: 78 SNSPTQTVGY 87
>gi|295090337|emb|CBK76444.1| DNA ligase, NAD-dependent [Clostridium cf. saccharolyticum K10]
Length = 676
Score = 38.1 bits (87), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
+++ LV+ H+ YY L+ P +D YDR+ ++L+ L+E+ ++ + P TVGY
Sbjct: 17 KIKELVQTLNRHRHAYYNLNAPEISDAEYDRMYDQLERLEEETGIIY-SNSPTQTVGY 73
>gi|24374425|ref|NP_718468.1| DNA ligase, NAD-dependent [Shewanella oneidensis MR-1]
gi|81460839|sp|Q8ED70|DNLJ_SHEON RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|24348997|gb|AAN55912.1|AE015728_1 DNA ligase, NAD-dependent [Shewanella oneidensis MR-1]
Length = 689
Score = 38.1 bits (87), Expect = 0.42, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY D P TD YDR+ ++L L+ ++P+ D P VG
Sbjct: 37 HNIRYYVDDAPSITDSEYDRLMQQLKKLEAEYPQFVLADSPTQRVG 82
>gi|320157090|ref|YP_004189469.1| DNA ligase [Vibrio vulnificus MO6-24/O]
gi|319932402|gb|ADV87266.1| DNA ligase [Vibrio vulnificus MO6-24/O]
Length = 669
Score = 38.1 bits (87), Expect = 0.42, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 64 EYL--VKIALH-HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+YL +K LH H YY DNP D YDR+ L A++ + PE D P VG
Sbjct: 7 QYLEELKQQLHYHAVRYYVEDNPEIPDAEYDRMMRELMAIEAEHPEWISVDSPSQRVG 64
>gi|27363688|ref|NP_759216.1| NAD-dependent DNA ligase LigA [Vibrio vulnificus CMCP6]
gi|81449211|sp|Q8DFK5|DNLJ_VIBVU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|27359804|gb|AAO08743.1| DNA ligase, NAD-dependent [Vibrio vulnificus CMCP6]
Length = 669
Score = 38.1 bits (87), Expect = 0.43, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 64 EYL--VKIALH-HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+YL +K LH H YY DNP D YDR+ L A++ + PE D P VG
Sbjct: 7 QYLEELKQQLHYHAVRYYVEDNPEIPDAEYDRMMRELMAIEAEHPEWISVDSPSQRVG 64
>gi|221639033|ref|YP_002525295.1| DNA ligase [Rhodobacter sphaeroides KD131]
gi|254781405|sp|B9KRK2|DNLJ_RHOSK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|221159814|gb|ACM00794.1| DNA ligase [Rhodobacter sphaeroides KD131]
Length = 704
Score = 38.1 bits (87), Expect = 0.43, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
Y+ D P +D YD + R A++EQFPEL D P + VG
Sbjct: 33 YHTHDAPQISDADYDALRLRNRAIEEQFPELRRSDSPSDRVG 74
>gi|37679166|ref|NP_933775.1| NAD-dependent DNA ligase LigA [Vibrio vulnificus YJ016]
gi|81758078|sp|Q7MMT5|DNLJ_VIBVY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|37197908|dbj|BAC93746.1| NAD-dependent DNA ligase [Vibrio vulnificus YJ016]
Length = 669
Score = 38.1 bits (87), Expect = 0.43, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 64 EYL--VKIALH-HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+YL +K LH H YY DNP D YDR+ L A++ + PE D P VG
Sbjct: 7 QYLEELKQQLHYHAVRYYVEDNPEIPDAEYDRMMRELMAIEAEHPEWISVDSPSQRVG 64
>gi|297717812|gb|ADI50049.1| DNA ligase [Candidatus Odyssella thessalonicensis L13]
Length = 676
Score = 38.1 bits (87), Expect = 0.44, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L K +H + Y++ D P +D YD + R ++ FP+L ED P VG
Sbjct: 1 LAKTIAYHDELYFQKDMPQISDAAYDALVVRNRQIENLFPDLRREDSPSKRVG 53
>gi|261392961|emb|CAX50546.1| DNA ligase (polydeoxyribonucleotide synthase [NAD+]) [Neisseria
meningitidis 8013]
Length = 841
Score = 38.1 bits (87), Expect = 0.44, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 36/83 (43%)
Query: 36 PNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSE 95
PN + ++ + K S K A + +L + + YY LD P D YDR+
Sbjct: 3 PNSKHNTNFTNLLKPSDSDIKQFAAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDRLFR 62
Query: 96 RLDALQEQFPELFDEDHPWNTVG 118
L+AL+ PE D P VG
Sbjct: 63 ELEALELNHPEFKLPDSPTQRVG 85
>gi|302878427|ref|YP_003846991.1| DNA ligase, NAD-dependent [Gallionella capsiferriformans ES-2]
gi|302581216|gb|ADL55227.1| DNA ligase, NAD-dependent [Gallionella capsiferriformans ES-2]
Length = 674
Score = 38.1 bits (87), Expect = 0.44, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 20/46 (43%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY LD P D YD + L L+ Q PE D P VG
Sbjct: 20 HNYQYYVLDAPTVPDAGYDTLFRELQRLEAQHPEFLTSDSPTQRVG 65
>gi|113868039|ref|YP_726528.1| NAD-dependent DNA ligase [Ralstonia eutropha H16]
gi|123133949|sp|Q0KA11|DNLJ_RALEH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|113526815|emb|CAJ93160.1| NAD-dependent DNA ligase [Ralstonia eutropha H16]
Length = 709
Score = 38.1 bits (87), Expect = 0.44, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 22/46 (47%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY LD P D YD + L AL+ + PEL D P VG
Sbjct: 38 HNYQYYVLDAPTIPDAEYDALFSELQALELEHPELQTPDSPTQRVG 83
>gi|229083590|ref|ZP_04215919.1| DNA ligase [Bacillus cereus Rock3-44]
gi|228699722|gb|EEL52378.1| DNA ligase [Bacillus cereus Rock3-44]
Length = 669
Score = 38.1 bits (87), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK +A +E L + Y+ LDNP +D YDR + L L+ + PE ED P
Sbjct: 1 MSKEKAKQRIEELRDMLNACNYQYHVLDNPSVSDAEYDRDMQELIKLEAENPEFLTEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TVRVG 65
>gi|154498024|ref|ZP_02036402.1| hypothetical protein BACCAP_02004 [Bacteroides capillosus ATCC
29799]
gi|150273014|gb|EDN00171.1| hypothetical protein BACCAP_02004 [Bacteroides capillosus ATCC
29799]
Length = 664
Score = 37.7 bits (86), Expect = 0.46, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LDNP +D +D RL+ L++ P+ ED P VG
Sbjct: 21 YYVLDNPTMSDYDFDHKLRRLEELEQAHPDQITEDSPTRRVG 62
>gi|22298400|ref|NP_681647.1| NAD-dependent DNA ligase LigA [Thermosynechococcus elongatus BP-1]
gi|81743454|sp|Q8DKK2|DNLJ_THEEB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|22294579|dbj|BAC08409.1| DNA ligase [Thermosynechococcus elongatus BP-1]
Length = 689
Score = 37.7 bits (86), Expect = 0.46, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P+ D +YD++ L L+ +PE D P +G
Sbjct: 25 YYALDQPIMEDEVYDQLYRELQELEAAYPEYITPDSPTQRIG 66
>gi|294497111|ref|YP_003560811.1| DNA ligase, NAD-dependent [Bacillus megaterium QM B1551]
gi|294347048|gb|ADE67377.1| DNA ligase, NAD-dependent [Bacillus megaterium QM B1551]
Length = 668
Score = 37.7 bits (86), Expect = 0.47, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YD++ L ++E FPEL D P +G
Sbjct: 24 YYVLDQPSVPDAEYDKLMNELIEIEESFPELKTADSPTQRIG 65
>gi|319744895|gb|EFV97229.1| NAD-dependent DNA ligase LigA [Streptococcus agalactiae ATCC 13813]
Length = 652
Score = 37.7 bits (86), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV + + K YY DNP +D YD++ L L+EQ PE + P + VG
Sbjct: 8 LVSLLNQYAKEYYTQDNPTVSDSQYDQLYRELVELEEQHPENILPNSPTHRVG 60
>gi|317455470|pdb|3PN1|A Chain A, Novel Bacterial Nad+-Dependent Dna Ligase Inhibitors With
Broad Spectrum Potency And Antibacterial Efficacy In
Vivo
Length = 318
Score = 37.7 bits (86), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L K ++ Y+ LDNP D YDR+ +L AL+ + PE D P VG
Sbjct: 7 QLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPTQRVG 63
>gi|145627933|ref|ZP_01783734.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 22.1-21]
gi|145640788|ref|ZP_01796371.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae R3021]
gi|144979708|gb|EDJ89367.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 22.1-21]
gi|145274714|gb|EDK14577.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 22.4-21]
Length = 278
Score = 37.7 bits (86), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L K ++ Y+ LDNP D YDR+ +L AL+ + PE D P VG
Sbjct: 7 QLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPTQRVG 63
>gi|197117724|ref|YP_002138151.1| NAD-dependent DNA ligase [Geobacter bemidjiensis Bem]
gi|254781337|sp|B5EIJ0|DNLJ_GEOBB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|197087084|gb|ACH38355.1| DNA ligase, NAD-dependent [Geobacter bemidjiensis Bem]
Length = 668
Score = 37.7 bits (86), Expect = 0.47, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 29/65 (44%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K A +++L H + YY D P TD YD + L L+ +P+L D P
Sbjct: 1 MDKTAAAQRIKWLSSEIERHNRLYYEQDMPEITDAEYDALFRELKELEASYPDLALPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TGRVG 65
>gi|25010923|ref|NP_735318.1| NAD-dependent DNA ligase LigA [Streptococcus agalactiae NEM316]
gi|81457056|sp|Q8E5W1|DNLJ_STRA3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|23095302|emb|CAD46512.1| Unknown [Streptococcus agalactiae NEM316]
Length = 652
Score = 37.7 bits (86), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV + + K YY DNP +D YD++ L L+EQ PE + P + VG
Sbjct: 8 LVSLLNQYAKEYYTQDNPTVSDSQYDQLYRELVELEEQHPENILPNSPTHRVG 60
>gi|187928361|ref|YP_001898848.1| DNA ligase [Ralstonia pickettii 12J]
gi|254781397|sp|B2UB00|DNLJ_RALPJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|187725251|gb|ACD26416.1| DNA ligase, NAD-dependent [Ralstonia pickettii 12J]
Length = 817
Score = 37.7 bits (86), Expect = 0.48, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ L+AL+ + PEL D P VG
Sbjct: 35 YYVLDQPSVPDVEYDRLYRELEALETEHPELKTPDSPTLRVG 76
>gi|255021565|ref|ZP_05293608.1| DNA ligase [Acidithiobacillus caldus ATCC 51756]
gi|254968953|gb|EET26472.1| DNA ligase [Acidithiobacillus caldus ATCC 51756]
Length = 659
Score = 37.7 bits (86), Expect = 0.48, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YYR D P+ +D YD + L AL++ PEL D P VG
Sbjct: 10 YYRDDAPVMSDAEYDALLRELRALEDAHPELRVADSPTQRVG 51
>gi|42779416|ref|NP_976663.1| NAD-dependent DNA ligase LigA [Bacillus cereus ATCC 10987]
gi|81411242|sp|Q73EM3|DNLJ_BACC1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|42735332|gb|AAS39271.1| DNA ligase, NAD-dependent [Bacillus cereus ATCC 10987]
Length = 669
Score = 37.7 bits (86), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
Y+ LDNP +D YDR + L L+ + PE ED P VG
Sbjct: 24 YHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSPSVRVG 65
>gi|228919228|ref|ZP_04082598.1| DNA ligase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
gi|228840335|gb|EEM85606.1| DNA ligase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
Length = 669
Score = 37.7 bits (86), Expect = 0.49, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK A +E L + Y+ LDNP +D YDR + L L+ + PE ED P
Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SVRVG 65
>gi|229107967|ref|ZP_04237594.1| DNA ligase [Bacillus cereus Rock1-15]
gi|228675470|gb|EEL30687.1| DNA ligase [Bacillus cereus Rock1-15]
Length = 669
Score = 37.7 bits (86), Expect = 0.49, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK A +E L + Y+ LDNP +D YDR + L L+ + PE ED P
Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SVRVG 65
>gi|196045221|ref|ZP_03112453.1| DNA ligase, NAD-dependent [Bacillus cereus 03BB108]
gi|196023805|gb|EDX62480.1| DNA ligase, NAD-dependent [Bacillus cereus 03BB108]
Length = 669
Score = 37.7 bits (86), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
Y+ LDNP +D YDR + L L+ + PE ED P VG
Sbjct: 24 YHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSPSVRVG 65
>gi|161598439|ref|YP_120478.2| NAD-dependent DNA ligase LigA [Nocardia farcinica IFM 10152]
Length = 710
Score = 37.7 bits (86), Expect = 0.49, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 30/61 (49%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E + + L + HQ YY D P+ +DG +D + L L+++ P+L D P V
Sbjct: 25 EDRVRWQRLAEEVREHQFRYYVRDAPIISDGEFDALLRELQELEDRHPDLRTPDSPTQLV 84
Query: 118 G 118
G
Sbjct: 85 G 85
>gi|324324305|gb|ADY19565.1| NAD-dependent DNA ligase LigA [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 669
Score = 37.7 bits (86), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
Y+ LDNP +D YDR + L L+ + PE ED P VG
Sbjct: 24 YHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSPSVRVG 65
>gi|319946751|ref|ZP_08020985.1| NAD-dependent DNA ligase LigA [Streptococcus australis ATCC 700641]
gi|319746799|gb|EFV99058.1| NAD-dependent DNA ligase LigA [Streptococcus australis ATCC 700641]
Length = 652
Score = 37.7 bits (86), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV + H+ + YY D P +D YD++ L AL+E PEL + P + VG
Sbjct: 8 LVTLLNHYAEEYYTKDAPSVSDYEYDKLYRELVALEEAHPELVQPNSPTHRVG 60
>gi|300118925|ref|ZP_07056636.1| NAD-dependent DNA ligase LigA [Bacillus cereus SJ1]
gi|298723541|gb|EFI64272.1| NAD-dependent DNA ligase LigA [Bacillus cereus SJ1]
Length = 669
Score = 37.7 bits (86), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
Y+ LDNP +D YDR + L L+ + PE ED P VG
Sbjct: 24 YHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSPSVRVG 65
>gi|256826919|ref|YP_003150878.1| DNA ligase, NAD-dependent [Cryptobacterium curtum DSM 15641]
gi|256583062|gb|ACU94196.1| DNA ligase, NAD-dependent [Cryptobacterium curtum DSM 15641]
Length = 725
Score = 37.7 bits (86), Expect = 0.49, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 71 LHHQKW-YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ H W YY D P +D +D + L L+ + PE +D P VG
Sbjct: 26 IEHNSWLYYAQDAPAISDAAFDSLMRELRQLEAEHPEFYDPTSPTQRVG 74
>gi|229194680|ref|ZP_04321473.1| DNA ligase [Bacillus cereus m1293]
gi|228588783|gb|EEK46808.1| DNA ligase [Bacillus cereus m1293]
Length = 669
Score = 37.7 bits (86), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
Y+ LDNP +D YDR + L L+ + PE ED P VG
Sbjct: 24 YHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSPSVRVG 65
>gi|206974389|ref|ZP_03235306.1| DNA ligase, NAD-dependent [Bacillus cereus H3081.97]
gi|217957864|ref|YP_002336408.1| NAD-dependent DNA ligase LigA [Bacillus cereus AH187]
gi|254781553|sp|B7HSW5|DNLJ_BACC7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254781554|sp|B9J1L6|DNLJ_BACCQ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|206747629|gb|EDZ59019.1| DNA ligase, NAD-dependent [Bacillus cereus H3081.97]
gi|217064176|gb|ACJ78426.1| DNA ligase, NAD-dependent [Bacillus cereus AH187]
Length = 669
Score = 37.7 bits (86), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
Y+ LDNP +D YDR + L L+ + PE ED P VG
Sbjct: 24 YHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSPSVRVG 65
>gi|318059490|ref|ZP_07978213.1| NAD-dependent DNA ligase LigA [Streptomyces sp. SA3_actG]
gi|318076490|ref|ZP_07983822.1| NAD-dependent DNA ligase LigA [Streptomyces sp. SA3_actF]
Length = 783
Score = 37.7 bits (86), Expect = 0.49, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H+ YY D P+ +D +D + RL AL+E+ P+L D P V
Sbjct: 50 HRYRYYVNDQPVVSDAQFDELLRRLTALEEEHPQLRTPDSPTQKVA 95
>gi|302522063|ref|ZP_07274405.1| DNA ligase, NAD-dependent [Streptomyces sp. SPB78]
gi|302430958|gb|EFL02774.1| DNA ligase, NAD-dependent [Streptomyces sp. SPB78]
Length = 783
Score = 37.7 bits (86), Expect = 0.49, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H+ YY D P+ +D +D + RL AL+E+ P+L D P V
Sbjct: 50 HRYRYYVNDQPVVSDAQFDELLRRLTALEEEHPQLRTPDSPTQKVA 95
>gi|29829290|ref|NP_823924.1| NAD-dependent DNA ligase LigA [Streptomyces avermitilis MA-4680]
gi|81719851|sp|Q82JK7|DNLJ_STRAW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|29606397|dbj|BAC70459.1| putative DNA ligase [Streptomyces avermitilis MA-4680]
Length = 730
Score = 37.7 bits (86), Expect = 0.49, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H+ YY D P+ +D +D + L+AL+E++PEL D P V
Sbjct: 30 HRFRYYVKDAPVVSDAEFDTLLRSLEALEEEYPELRTPDSPTQKVA 75
>gi|42519595|ref|NP_965525.1| NAD-dependent DNA ligase [Lactobacillus johnsonii NCC 533]
gi|81667534|sp|Q74I49|DNLJ_LACJO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|41583884|gb|AAS09491.1| NAD-dependent DNA ligase [Lactobacillus johnsonii NCC 533]
Length = 668
Score = 37.7 bits (86), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 75 KW---YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
KW YY D P+ D +YD+ + L L+EQFP+L D VG
Sbjct: 22 KWADDYYAKDAPVVEDAVYDKTYQELVELEEQFPDLVTADSITQRVG 68
>gi|77414096|ref|ZP_00790264.1| DNA ligase, NAD-dependent [Streptococcus agalactiae 515]
gi|77159848|gb|EAO70991.1| DNA ligase, NAD-dependent [Streptococcus agalactiae 515]
Length = 648
Score = 37.7 bits (86), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV + + K YY DNP +D YD++ L L+EQ PE + P + VG
Sbjct: 4 LVSLLNQYAKEYYTQDNPTVSDSQYDQLYRELVELEEQHPENILPNSPTHRVG 56
>gi|229101110|ref|ZP_04231876.1| DNA ligase [Bacillus cereus Rock3-28]
gi|228682238|gb|EEL36349.1| DNA ligase [Bacillus cereus Rock3-28]
Length = 669
Score = 37.7 bits (86), Expect = 0.50, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK A +E L + Y+ LDNP +D YDR + L L+ + PE ED P
Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SVRVG 65
>gi|218895413|ref|YP_002443824.1| DNA ligase, NAD-dependent [Bacillus cereus G9842]
gi|228963387|ref|ZP_04124548.1| DNA ligase [Bacillus thuringiensis serovar sotto str. T04001]
gi|254781550|sp|B7IUW5|DNLJ_BACC2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|218545091|gb|ACK97485.1| DNA ligase, NAD-dependent [Bacillus cereus G9842]
gi|228796281|gb|EEM43728.1| DNA ligase [Bacillus thuringiensis serovar sotto str. T04001]
Length = 669
Score = 37.7 bits (86), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
Y+ LDNP +D YDR + L L+ + PE ED P VG
Sbjct: 24 YHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSPSVRVG 65
>gi|49479078|ref|YP_034626.1| NAD-dependent DNA ligase LigA [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|118476055|ref|YP_893206.1| NAD-dependent DNA ligase LigA [Bacillus thuringiensis str. Al
Hakam]
gi|225862344|ref|YP_002747722.1| DNA ligase, NAD-dependent [Bacillus cereus 03BB102]
gi|229182688|ref|ZP_04309929.1| DNA ligase [Bacillus cereus BGSC 6E1]
gi|81397398|sp|Q6HP94|DNLJ_BACHK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|166215395|sp|A0R906|DNLJ_BACAH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254781551|sp|C1EV74|DNLJ_BACC3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|49330634|gb|AAT61280.1| DNA ligase(NAD+) (NAD-dependent DNA ligase) [Bacillus thuringiensis
serovar konkukian str. 97-27]
gi|118415280|gb|ABK83699.1| NAD-dependent DNA ligase [Bacillus thuringiensis str. Al Hakam]
gi|225789655|gb|ACO29872.1| DNA ligase (NAD(+)) [Bacillus cereus 03BB102]
gi|228600773|gb|EEK58352.1| DNA ligase [Bacillus cereus BGSC 6E1]
Length = 669
Score = 37.7 bits (86), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
Y+ LDNP +D YDR + L L+ + PE ED P VG
Sbjct: 24 YHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSPSVRVG 65
>gi|30018549|ref|NP_830180.1| NAD-dependent DNA ligase LigA [Bacillus cereus ATCC 14579]
gi|229125792|ref|ZP_04254818.1| DNA ligase [Bacillus cereus BDRD-Cer4]
gi|81436035|sp|Q81IP2|DNLJ_BACCR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|29894090|gb|AAP07381.1| NAD-dependent DNA ligase [Bacillus cereus ATCC 14579]
gi|228657649|gb|EEL13461.1| DNA ligase [Bacillus cereus BDRD-Cer4]
Length = 669
Score = 37.7 bits (86), Expect = 0.50, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK A +E L + Y+ LDNP +D YDR + L L+ + PE ED P
Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SVRVG 65
>gi|163845839|ref|YP_001633883.1| DNA ligase [Chloroflexus aurantiacus J-10-fl]
gi|222523550|ref|YP_002568020.1| DNA ligase, NAD-dependent [Chloroflexus sp. Y-400-fl]
gi|190359243|sp|A9WCA1|DNLJ_CHLAA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254781286|sp|B9LHI6|DNLJ_CHLSY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|163667128|gb|ABY33494.1| DNA ligase, NAD-dependent [Chloroflexus aurantiacus J-10-fl]
gi|222447429|gb|ACM51695.1| DNA ligase, NAD-dependent [Chloroflexus sp. Y-400-fl]
Length = 709
Score = 37.7 bits (86), Expect = 0.50, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E+ L++ +H YY LD+P+ +D YD + L AL+ PEL D P V
Sbjct: 12 ELRSLIRRYDYH---YYVLDDPIVSDAEYDALMTELRALEAAHPELITPDSPTQRV 64
>gi|317485271|ref|ZP_07944151.1| DNA ligase [Bilophila wadsworthia 3_1_6]
gi|316923397|gb|EFV44603.1| DNA ligase [Bilophila wadsworthia 3_1_6]
Length = 698
Score = 37.7 bits (86), Expect = 0.50, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 28/56 (50%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+E L ++H Y+ LD P TD Y+ + L L+E+ PE D P N +G
Sbjct: 19 LEELRAFVIYHNHRYHTLDAPEITDDEYNAAFQELLRLEERHPEWRSPDSPTNRIG 74
>gi|52144941|ref|YP_081888.1| NAD-dependent DNA ligase LigA [Bacillus cereus E33L]
gi|81689708|sp|Q63GS3|DNLJ_BACCZ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|51978410|gb|AAU19960.1| DNA ligase(NAD+) (NAD-dependent DNA ligase) [Bacillus cereus E33L]
Length = 669
Score = 37.7 bits (86), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
Y+ LDNP +D YDR + L L+ + PE ED P VG
Sbjct: 24 YHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSPSVRVG 65
>gi|107028796|ref|YP_625891.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia AU 1054]
gi|105897960|gb|ABF80918.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia AU 1054]
Length = 746
Score = 37.7 bits (86), Expect = 0.50, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 20/42 (47%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ L L+ PEL D P VG
Sbjct: 86 YYVLDQPDLPDAEYDRLFRELQQLETDHPELVTPDSPTQRVG 127
>gi|328473436|gb|EGF44284.1| NAD-dependent DNA ligase LigA [Vibrio parahaemolyticus 10329]
Length = 670
Score = 37.7 bits (86), Expect = 0.51, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 67 VKIALH-HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+K +LH H YY DNP D YDR+ L ++ Q P+L D P VG
Sbjct: 12 LKESLHYHAVRYYVEDNPEIPDAEYDRLMRELLEIEAQHPDLVTVDSPSQRVG 64
>gi|301052018|ref|YP_003790229.1| DNA ligase [Bacillus anthracis CI]
gi|300374187|gb|ADK03091.1| DNA ligase [Bacillus cereus biovar anthracis str. CI]
Length = 669
Score = 37.7 bits (86), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
Y+ LDNP +D YDR + L L+ + PE ED P VG
Sbjct: 24 YHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSPSVRVG 65
>gi|206560458|ref|YP_002231222.1| DNA ligase [Burkholderia cenocepacia J2315]
gi|254781275|sp|B4ECN6|DNLJ_BURCJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|198036499|emb|CAR52396.1| DNA ligase [Burkholderia cenocepacia J2315]
Length = 691
Score = 37.7 bits (86), Expect = 0.51, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 20/42 (47%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ L L+ PEL D P VG
Sbjct: 31 YYVLDQPDLPDAEYDRLFRELQQLETDHPELVTPDSPTQRVG 72
>gi|170733380|ref|YP_001765327.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia MC0-3]
gi|254781274|sp|B1JUF5|DNLJ_BURCC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|169816622|gb|ACA91205.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia MC0-3]
Length = 691
Score = 37.7 bits (86), Expect = 0.51, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 20/42 (47%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ L L+ PEL D P VG
Sbjct: 31 YYVLDQPDLPDAEYDRLFRELQQLETDHPELVTPDSPTQRVG 72
>gi|313114130|ref|ZP_07799682.1| DNA ligase, NAD-dependent [Faecalibacterium cf. prausnitzii
KLE1255]
gi|310623539|gb|EFQ06942.1| DNA ligase, NAD-dependent [Faecalibacterium cf. prausnitzii
KLE1255]
Length = 666
Score = 37.7 bits (86), Expect = 0.51, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 28/61 (45%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+A VE L + + + YY D P D YD ++ L L+ QFP+L P V
Sbjct: 8 QAKKRVEELRAVIEKNNRLYYDQDAPELEDFEYDALTRELKELEAQFPQLVTASSPTQKV 67
Query: 118 G 118
G
Sbjct: 68 G 68
>gi|229095009|ref|ZP_04226005.1| DNA ligase [Bacillus cereus Rock3-29]
gi|229113962|ref|ZP_04243388.1| DNA ligase [Bacillus cereus Rock1-3]
gi|228669421|gb|EEL24837.1| DNA ligase [Bacillus cereus Rock1-3]
gi|228688339|gb|EEL42221.1| DNA ligase [Bacillus cereus Rock3-29]
Length = 669
Score = 37.7 bits (86), Expect = 0.51, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK A +E L + Y+ LDNP +D YDR + L L+ + PE ED P
Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SVRVG 65
>gi|116690045|ref|YP_835668.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia HI2424]
gi|166215562|sp|A0K8E8|DNLJ_BURCH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|166215593|sp|Q1BHI7|DNLJ_BURCA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|116648134|gb|ABK08775.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia HI2424]
Length = 691
Score = 37.7 bits (86), Expect = 0.51, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 20/42 (47%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ L L+ PEL D P VG
Sbjct: 31 YYVLDQPDLPDAEYDRLFRELQQLETDHPELVTPDSPTQRVG 72
>gi|30249713|ref|NP_841783.1| NAD-dependent DNA ligase [Nitrosomonas europaea ATCC 19718]
gi|75540341|sp|Q82TW6|DNLJ_NITEU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|30180750|emb|CAD85664.1| NAD-dependent DNA ligase [Nitrosomonas europaea ATCC 19718]
Length = 681
Score = 37.7 bits (86), Expect = 0.51, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 69 IALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
IALH YY D P+ D YD + L L++Q+P L D P VG
Sbjct: 18 IALHDFH-YYVQDAPVIPDAEYDALFRTLQQLEQQYPHLVTPDSPTQRVG 66
>gi|254247879|ref|ZP_04941200.1| NAD-dependent DNA ligase [Burkholderia cenocepacia PC184]
gi|124872655|gb|EAY64371.1| NAD-dependent DNA ligase [Burkholderia cenocepacia PC184]
Length = 691
Score = 37.7 bits (86), Expect = 0.51, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 20/42 (47%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ L L+ PEL D P VG
Sbjct: 31 YYVLDQPDLPDAEYDRLFRELQQLETDHPELVTPDSPTQRVG 72
>gi|28897574|ref|NP_797179.1| NAD-dependent DNA ligase LigA [Vibrio parahaemolyticus RIMD
2210633]
gi|260878266|ref|ZP_05890621.1| DNA ligase (NAD+) [Vibrio parahaemolyticus AN-5034]
gi|260895418|ref|ZP_05903914.1| DNA ligase (NAD+) [Vibrio parahaemolyticus Peru-466]
gi|260903353|ref|ZP_05911748.1| DNA ligase (NAD+) [Vibrio parahaemolyticus AQ4037]
gi|81728289|sp|Q87RJ4|DNLJ_VIBPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|28805786|dbj|BAC59063.1| DNA ligase [Vibrio parahaemolyticus RIMD 2210633]
gi|308088617|gb|EFO38312.1| DNA ligase (NAD+) [Vibrio parahaemolyticus Peru-466]
gi|308090169|gb|EFO39864.1| DNA ligase (NAD+) [Vibrio parahaemolyticus AN-5034]
gi|308107994|gb|EFO45534.1| DNA ligase (NAD+) [Vibrio parahaemolyticus AQ4037]
Length = 670
Score = 37.7 bits (86), Expect = 0.51, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 67 VKIALH-HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+K +LH H YY DNP D YDR+ L ++ Q P+L D P VG
Sbjct: 12 LKESLHYHAVRYYVEDNPEIPDAEYDRLMRELLEIEAQHPDLVTVDSPSQRVG 64
>gi|17229209|ref|NP_485757.1| NAD-dependent DNA ligase LigA [Nostoc sp. PCC 7120]
gi|81772126|sp|Q8YW98|DNLJ_ANASP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|17135537|dbj|BAB78083.1| DNA ligase [Nostoc sp. PCC 7120]
Length = 677
Score = 37.7 bits (86), Expect = 0.51, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 27/56 (48%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
VE L ++ YY D P+ D +YD++ L L+ Q PEL D P +G
Sbjct: 11 VEELRRLLQQASYAYYVSDAPIMEDAVYDQLYRELQQLEIQHPELVTPDSPTQRIG 66
>gi|333024269|ref|ZP_08452333.1| putative NAD-dependent DNA ligase LigA [Streptomyces sp. Tu6071]
gi|332744121|gb|EGJ74562.1| putative NAD-dependent DNA ligase LigA [Streptomyces sp. Tu6071]
Length = 771
Score = 37.7 bits (86), Expect = 0.52, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H+ YY D P+ +D +D + RL AL+E+ P+L D P V
Sbjct: 50 HRYRYYVNDQPVVSDAQFDELLRRLTALEEEHPQLRTPDSPTQKVA 95
>gi|229042193|ref|ZP_04189947.1| DNA ligase [Bacillus cereus AH676]
gi|228727128|gb|EEL78331.1| DNA ligase [Bacillus cereus AH676]
Length = 669
Score = 37.7 bits (86), Expect = 0.52, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK A +E L + Y+ LDNP +D YDR + L L+ + PE ED P
Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SVRVG 65
>gi|218230787|ref|YP_002365135.1| NAD-dependent DNA ligase LigA [Bacillus cereus B4264]
gi|254781552|sp|B7H4U8|DNLJ_BACC4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|218158744|gb|ACK58736.1| DNA ligase (NAD(+)) [Bacillus cereus B4264]
Length = 669
Score = 37.7 bits (86), Expect = 0.52, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK A +E L + Y+ LDNP +D YDR + L L+ + PE ED P
Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SVRVG 65
>gi|81373659|sp|Q5YRS7|DNLJ2_NOCFA RecName: Full=DNA ligase 2; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] 2
gi|54017744|dbj|BAD59114.1| putative DNA ligase [Nocardia farcinica IFM 10152]
Length = 683
Score = 37.7 bits (86), Expect = 0.52, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HQ YY D P+ +DG +D + L L+++ P+L D P VG
Sbjct: 13 HQFRYYVRDAPIISDGEFDALLRELQELEDRHPDLRTPDSPTQLVG 58
>gi|228956728|ref|ZP_04118514.1| DNA ligase [Bacillus thuringiensis serovar pakistani str. T13001]
gi|229143090|ref|ZP_04271523.1| DNA ligase [Bacillus cereus BDRD-ST24]
gi|296501121|ref|YP_003662821.1| NAD-dependent DNA ligase LigA [Bacillus thuringiensis BMB171]
gi|228640363|gb|EEK96760.1| DNA ligase [Bacillus cereus BDRD-ST24]
gi|228802916|gb|EEM49748.1| DNA ligase [Bacillus thuringiensis serovar pakistani str. T13001]
gi|296322173|gb|ADH05101.1| NAD-dependent DNA ligase LigA [Bacillus thuringiensis BMB171]
Length = 669
Score = 37.7 bits (86), Expect = 0.52, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK A +E L + Y+ LDNP +D YDR + L L+ + PE ED P
Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SVRVG 65
>gi|229148695|ref|ZP_04276945.1| DNA ligase [Bacillus cereus m1550]
gi|228634703|gb|EEK91282.1| DNA ligase [Bacillus cereus m1550]
Length = 669
Score = 37.7 bits (86), Expect = 0.52, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK A +E L + Y+ LDNP +D YDR + L L+ + PE ED P
Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SVRVG 65
>gi|302554316|ref|ZP_07306658.1| DNA ligase, NAD-dependent [Streptomyces viridochromogenes DSM
40736]
gi|302471934|gb|EFL35027.1| DNA ligase, NAD-dependent [Streptomyces viridochromogenes DSM
40736]
Length = 731
Score = 37.7 bits (86), Expect = 0.53, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 46 DKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFP 105
DK + T++ EA + L + H+ YY D P+ +D +D++ L+AL++++P
Sbjct: 4 DKQAETTTVP-AEAREKHARLAEQIEEHRFRYYVKDAPVVSDAEFDQLLRSLEALEDEYP 62
Query: 106 ELFDEDHPWNTVG 118
EL D P V
Sbjct: 63 ELRTPDSPTQKVA 75
>gi|153838362|ref|ZP_01991029.1| DNA ligase, NAD-dependent [Vibrio parahaemolyticus AQ3810]
gi|149748221|gb|EDM59080.1| DNA ligase, NAD-dependent [Vibrio parahaemolyticus AQ3810]
Length = 670
Score = 37.7 bits (86), Expect = 0.53, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 67 VKIALH-HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+K +LH H YY DNP D YDR+ L ++ Q P+L D P VG
Sbjct: 12 LKESLHYHAVRYYVEDNPEIPDAEYDRLMRELLEIEAQHPDLVTVDSPSQRVG 64
>gi|227494609|ref|ZP_03924925.1| DNA ligase (NAD(+)) [Actinomyces coleocanis DSM 15436]
gi|226832343|gb|EEH64726.1| DNA ligase (NAD(+)) [Actinomyces coleocanis DSM 15436]
Length = 806
Score = 37.7 bits (86), Expect = 0.53, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P +D YD + E L L+ ++P L D P TVG
Sbjct: 51 YYNLDAPTASDAEYDVLFEELKDLEAKWPMLVTPDSPTQTVG 92
>gi|150025890|ref|YP_001296716.1| DNA ligase (NAD+) [Flavobacterium psychrophilum JIP02/86]
gi|166215404|sp|A6H0N9|DNLJ_FLAPJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|149772431|emb|CAL43913.1| DNA ligase (NAD+) [Flavobacterium psychrophilum JIP02/86]
Length = 666
Score = 37.7 bits (86), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 25/46 (54%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY LDNP +D +D L +L++ PE FDE+ P VG
Sbjct: 17 HNYNYYVLDNPTISDYDFDVKLTDLQSLEKNNPEYFDENSPTQRVG 62
>gi|59712497|ref|YP_205273.1| NAD-dependent DNA ligase LigA [Vibrio fischeri ES114]
gi|75353581|sp|Q5E3L1|DNLJ_VIBF1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|59480598|gb|AAW86385.1| DNA ligase, NAD(+)-dependent [Vibrio fischeri ES114]
Length = 668
Score = 37.7 bits (86), Expect = 0.53, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+H YY D+P D YDR+ ++L +++ + PEL D P VG
Sbjct: 16 YHAYRYYVEDSPELPDAEYDRMMQQLLSIESEHPELVTVDSPSQRVG 62
>gi|298372045|ref|ZP_06982035.1| DNA ligase, NAD-dependent [Bacteroidetes oral taxon 274 str. F0058]
gi|298274949|gb|EFI16500.1| DNA ligase, NAD-dependent [Bacteroidetes oral taxon 274 str. F0058]
Length = 670
Score = 37.7 bits (86), Expect = 0.54, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 28/46 (60%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY +NP +D +D ++L+++++ +PE FD++ P VG
Sbjct: 20 HNHAYYVDNNPTISDFEFDMRLKQLESMEKAYPEYFDKNSPTQRVG 65
>gi|145298235|ref|YP_001141076.1| NAD-dependent DNA ligase [Aeromonas salmonicida subsp. salmonicida
A449]
gi|166215387|sp|A4SKA6|DNLJ_AERS4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|142851007|gb|ABO89328.1| NAD-dependent DNA ligase [Aeromonas salmonicida subsp. salmonicida
A449]
Length = 664
Score = 37.7 bits (86), Expect = 0.54, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HQ YY LDNP D YDR+ L A++ + PEL P VG
Sbjct: 20 HQ--YYVLDNPTVPDAEYDRLMRELIAIESEHPELKTSASPSVRVG 63
>gi|78066803|ref|YP_369572.1| DNA ligase (NAD+) [Burkholderia sp. 383]
gi|123742568|sp|Q39F38|DNLJ_BURS3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|77967548|gb|ABB08928.1| DNA ligase (NAD+) [Burkholderia sp. 383]
Length = 691
Score = 37.7 bits (86), Expect = 0.54, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 20/42 (47%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ L L+ PEL D P VG
Sbjct: 31 YYVLDQPDLPDAEYDRLFRELQQLETDHPELVTPDSPTQRVG 72
>gi|254724765|ref|ZP_05186548.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. A1055]
Length = 669
Score = 37.7 bits (86), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
Y+ LDNP +D YDR + L L+ + PE ED P VG
Sbjct: 24 YHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSPSIRVG 65
>gi|229496499|ref|ZP_04390213.1| DNA ligase, NAD-dependent [Porphyromonas endodontalis ATCC 35406]
gi|229316396|gb|EEN82315.1| DNA ligase, NAD-dependent [Porphyromonas endodontalis ATCC 35406]
Length = 671
Score = 37.7 bits (86), Expect = 0.55, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY L PL +D +DR+ ++L L+ Q PEL P VG
Sbjct: 17 QHNYRYYVLSTPLISDVEFDRLMQQLIDLEAQHPELITPTSPTQRVG 63
>gi|228931797|ref|ZP_04094693.1| DNA ligase [Bacillus thuringiensis serovar andalousiensis BGSC
4AW1]
gi|228827777|gb|EEM73515.1| DNA ligase [Bacillus thuringiensis serovar andalousiensis BGSC
4AW1]
Length = 669
Score = 37.7 bits (86), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
Y+ LDNP +D YDR + L L+ + PE ED P VG
Sbjct: 24 YHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSPSIRVG 65
>gi|229028145|ref|ZP_04184287.1| DNA ligase [Bacillus cereus AH1271]
gi|228733163|gb|EEL84003.1| DNA ligase [Bacillus cereus AH1271]
Length = 669
Score = 37.7 bits (86), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
Y+ LDNP +D YDR + L L+ + PE ED P VG
Sbjct: 24 YHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSPSIRVG 65
>gi|228937587|ref|ZP_04100225.1| DNA ligase [Bacillus thuringiensis serovar berliner ATCC 10792]
gi|228970474|ref|ZP_04131125.1| DNA ligase [Bacillus thuringiensis serovar thuringiensis str.
T01001]
gi|228977043|ref|ZP_04137446.1| DNA ligase [Bacillus thuringiensis Bt407]
gi|228782660|gb|EEM30835.1| DNA ligase [Bacillus thuringiensis Bt407]
gi|228789206|gb|EEM37134.1| DNA ligase [Bacillus thuringiensis serovar thuringiensis str.
T01001]
gi|228822068|gb|EEM68058.1| DNA ligase [Bacillus thuringiensis serovar berliner ATCC 10792]
gi|326938080|gb|AEA13976.1| NAD-dependent DNA ligase LigA [Bacillus thuringiensis serovar
chinensis CT-43]
Length = 669
Score = 37.7 bits (86), Expect = 0.55, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK A +E L + Y+ LDNP +D YDR + L L+ + PE ED P
Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRDMQELIKLEAENPEFMSEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SVRVG 65
>gi|218901495|ref|YP_002449329.1| DNA ligase, NAD-dependent [Bacillus cereus AH820]
gi|254781549|sp|B7JM96|DNLJ_BACC0 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|218535434|gb|ACK87832.1| DNA ligase, NAD-dependent [Bacillus cereus AH820]
Length = 669
Score = 37.7 bits (86), Expect = 0.55, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK A +E L + Y+ LDNP +D YDR + L L+ + PE ED P
Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SIRVG 65
>gi|30260478|ref|NP_842855.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. Ames]
gi|49183320|ref|YP_026572.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. Sterne]
gi|50196911|ref|YP_052606.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. 'Ames
Ancestor']
gi|65317730|ref|ZP_00390689.1| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II)
[Bacillus anthracis str. A2012]
gi|165871348|ref|ZP_02215996.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0488]
gi|167634237|ref|ZP_02392559.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0442]
gi|167640082|ref|ZP_02398349.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0193]
gi|170688355|ref|ZP_02879564.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0465]
gi|170708762|ref|ZP_02899199.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0389]
gi|177653653|ref|ZP_02935792.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0174]
gi|190567340|ref|ZP_03020254.1| DNA ligase, NAD-dependent [Bacillus anthracis Tsiankovskii-I]
gi|190567489|ref|ZP_03020402.1| DNA ligase, NAD-dependent [Bacillus anthracis Tsiankovskii-I]
gi|196034623|ref|ZP_03102031.1| DNA ligase, NAD-dependent [Bacillus cereus W]
gi|227812970|ref|YP_002812979.1| DNA ligase, NAD-dependent [Bacillus anthracis str. CDC 684]
gi|228913034|ref|ZP_04076673.1| DNA ligase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
gi|228925550|ref|ZP_04088639.1| DNA ligase [Bacillus thuringiensis serovar pondicheriensis BGSC
4BA1]
gi|228944102|ref|ZP_04106481.1| DNA ligase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
gi|229119952|ref|ZP_04249207.1| DNA ligase [Bacillus cereus 95/8201]
gi|229604913|ref|YP_002864923.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0248]
gi|254686689|ref|ZP_05150547.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. CNEVA-9066]
gi|254739086|ref|ZP_05196788.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. Western
North America USA6153]
gi|254742292|ref|ZP_05199978.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. Kruger B]
gi|254756068|ref|ZP_05208097.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. Vollum]
gi|254761885|ref|ZP_05213734.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. Australia
94]
gi|81584374|sp|Q81ZG1|DNLJ_BACAN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254781547|sp|C3PBP1|DNLJ_BACAA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254781548|sp|C3L543|DNLJ_BACAC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|30253846|gb|AAP24341.1| DNA ligase (NAD(+)) [Bacillus anthracis str. Ames]
gi|49177247|gb|AAT52623.1| DNA ligase, NAD-dependent [Bacillus anthracis str. Sterne]
gi|50082973|gb|AAT70114.1| DNA ligase, NAD-dependent [Bacillus anthracis str. 'Ames Ancestor']
gi|164712832|gb|EDR18361.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0488]
gi|167511893|gb|EDR87272.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0193]
gi|167530551|gb|EDR93266.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0442]
gi|170126341|gb|EDS95231.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0389]
gi|170667687|gb|EDT18441.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0465]
gi|172081233|gb|EDT66308.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0174]
gi|190561276|gb|EDV15248.1| DNA ligase, NAD-dependent [Bacillus anthracis Tsiankovskii-I]
gi|190561467|gb|EDV15438.1| DNA ligase, NAD-dependent [Bacillus anthracis Tsiankovskii-I]
gi|195992666|gb|EDX56626.1| DNA ligase, NAD-dependent [Bacillus cereus W]
gi|227002604|gb|ACP12347.1| DNA ligase (NAD(+)) [Bacillus anthracis str. CDC 684]
gi|228663418|gb|EEL19003.1| DNA ligase [Bacillus cereus 95/8201]
gi|228815491|gb|EEM61733.1| DNA ligase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
gi|228834028|gb|EEM79576.1| DNA ligase [Bacillus thuringiensis serovar pondicheriensis BGSC
4BA1]
gi|228846439|gb|EEM91452.1| DNA ligase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
gi|229269321|gb|ACQ50958.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0248]
Length = 669
Score = 37.7 bits (86), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
Y+ LDNP +D YDR + L L+ + PE ED P VG
Sbjct: 24 YHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSPSIRVG 65
>gi|296046585|gb|ADG86434.1| NAD-dependent DNA ligase [Francisella novicida]
Length = 670
Score = 37.7 bits (86), Expect = 0.55, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E++ L H YY D P D YDR+ +RL L+ +P+ D P VG
Sbjct: 7 EMDQLTHTINQHNIRYYVDDAPSIPDAEYDRLIKRLTELERDYPQFKSVDSPTQRVG 63
>gi|228983547|ref|ZP_04143752.1| DNA ligase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
gi|228776143|gb|EEM24504.1| DNA ligase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
Length = 669
Score = 37.7 bits (86), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
Y+ LDNP +D YDR + L L+ + PE ED P VG
Sbjct: 24 YHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSPSIRVG 65
>gi|229159446|ref|ZP_04287464.1| DNA ligase [Bacillus cereus R309803]
gi|228624017|gb|EEK80825.1| DNA ligase [Bacillus cereus R309803]
Length = 669
Score = 37.7 bits (86), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
Y+ LDNP +D YDR + L L+ + PE ED P VG
Sbjct: 24 YHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSPSIRVG 65
>gi|300783591|ref|YP_003763882.1| DNA ligase (NAD+) [Amycolatopsis mediterranei U32]
gi|299793105|gb|ADJ43480.1| DNA ligase (NAD+) [Amycolatopsis mediterranei U32]
Length = 726
Score = 37.7 bits (86), Expect = 0.56, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HQ YY LD+P+ +DG +D + L L++ P L + P VG
Sbjct: 44 HQFRYYVLDSPIISDGQFDELLGELQRLEDAHPALVTPESPTQRVG 89
>gi|228906068|ref|ZP_04069957.1| DNA ligase [Bacillus thuringiensis IBL 200]
gi|228853477|gb|EEM98245.1| DNA ligase [Bacillus thuringiensis IBL 200]
Length = 669
Score = 37.7 bits (86), Expect = 0.56, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK A +E L + Y+ LDNP +D YDR + L L+ + PE ED P
Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRDMQELIKLEAENPEFMSEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SVRVG 65
>gi|229154059|ref|ZP_04282184.1| DNA ligase [Bacillus cereus ATCC 4342]
gi|228629339|gb|EEK86041.1| DNA ligase [Bacillus cereus ATCC 4342]
Length = 669
Score = 37.7 bits (86), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
Y+ LDNP +D YDR + L L+ + PE ED P VG
Sbjct: 24 YHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSPSIRVG 65
>gi|229089420|ref|ZP_04220691.1| DNA ligase [Bacillus cereus Rock3-42]
gi|228693897|gb|EEL47589.1| DNA ligase [Bacillus cereus Rock3-42]
Length = 669
Score = 37.7 bits (86), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
Y+ LDNP +D YDR + L L+ + PE ED P VG
Sbjct: 24 YHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSPSIRVG 65
>gi|229171138|ref|ZP_04298732.1| DNA ligase [Bacillus cereus MM3]
gi|228612316|gb|EEK69544.1| DNA ligase [Bacillus cereus MM3]
Length = 669
Score = 37.7 bits (86), Expect = 0.56, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK A +E L + Y+ LDNP +D YDR + L L+ + PE ED P
Sbjct: 1 MSKEIAKQRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SIRVG 65
>gi|196040110|ref|ZP_03107412.1| DNA ligase (NAD(+)) [Bacillus cereus NVH0597-99]
gi|196028965|gb|EDX67570.1| DNA ligase (NAD(+)) [Bacillus cereus NVH0597-99]
Length = 669
Score = 37.7 bits (86), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
Y+ LDNP +D YDR + L L+ + PE ED P VG
Sbjct: 24 YHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSPSIRVG 65
>gi|307729327|ref|YP_003906551.1| DNA ligase, NAD-dependent [Burkholderia sp. CCGE1003]
gi|307583862|gb|ADN57260.1| DNA ligase, NAD-dependent [Burkholderia sp. CCGE1003]
Length = 688
Score = 37.7 bits (86), Expect = 0.57, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ + L++++ + P+L D P VG
Sbjct: 32 YYVLDQPDLPDAEYDRLFKELESIEAEHPDLIVPDSPTQRVG 73
>gi|289422752|ref|ZP_06424592.1| DNA ligase (NAD(+)) [Peptostreptococcus anaerobius 653-L]
gi|289156931|gb|EFD05556.1| DNA ligase (NAD(+)) [Peptostreptococcus anaerobius 653-L]
Length = 700
Score = 37.7 bits (86), Expect = 0.57, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+H YY DNP +D YDR+ L L++++P+L D P VG
Sbjct: 41 YHSDSYYNKDNPEISDYQYDRMMRCLIGLEDKYPDLKAPDSPSVRVG 87
>gi|312197574|ref|YP_004017635.1| hypothetical protein FraEuI1c_3758 [Frankia sp. EuI1c]
gi|311228910|gb|ADP81765.1| hypothetical protein FraEuI1c_3758 [Frankia sp. EuI1c]
Length = 347
Score = 37.7 bits (86), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 13/103 (12%)
Query: 4 FDRVFRSSKFENEHNITPAQWKKLLTLE---AKFLPNKRALESWLDKAKKVTS------- 53
FD E + PA W LL E A P+ ALE+WL A+++ +
Sbjct: 113 FDLPPAGRTPEAAVELLPAAWADLLAREPELAAMFPDGEALEAWLASARELLAGYFALED 172
Query: 54 ---LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRV 93
L+ + VE+++ L + + RLD DGL RV
Sbjct: 173 PRRLAPAARELYVEHVLGSGLRLRGYVDRLDEATTPDGLALRV 215
>gi|163731899|ref|ZP_02139346.1| DNA ligase, NAD-dependent [Roseobacter litoralis Och 149]
gi|161395353|gb|EDQ19675.1| DNA ligase, NAD-dependent [Roseobacter litoralis Och 149]
Length = 705
Score = 37.7 bits (86), Expect = 0.57, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 32/66 (48%)
Query: 53 SLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDH 112
SL++ A E+ L ++ Y+ D P +D YD R AL+++FP L D
Sbjct: 8 SLNEKAAEEELSRLAELLEQANTAYHTKDAPFMSDAEYDAYKRRNLALEDRFPHLKRADS 67
Query: 113 PWNTVG 118
P + VG
Sbjct: 68 PTDVVG 73
>gi|75759916|ref|ZP_00739987.1| NAD-dependent DNA ligase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|228899023|ref|ZP_04063296.1| DNA ligase [Bacillus thuringiensis IBL 4222]
gi|74492583|gb|EAO55728.1| NAD-dependent DNA ligase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|228860598|gb|EEN04985.1| DNA ligase [Bacillus thuringiensis IBL 4222]
Length = 669
Score = 37.7 bits (86), Expect = 0.57, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK A +E L + Y+ LDNP +D YDR + L L+ + PE ED P
Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIELEAENPEFMSEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SVRVG 65
>gi|328956034|ref|YP_004373367.1| DNA ligase, NAD-dependent [Coriobacterium glomerans PW2]
gi|328456358|gb|AEB07552.1| DNA ligase, NAD-dependent [Coriobacterium glomerans PW2]
Length = 752
Score = 37.7 bits (86), Expect = 0.58, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 38/84 (45%)
Query: 35 LPNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVS 94
+P + + +S A +TS + E L ++ +H YY LD P +D +DR+
Sbjct: 20 MPGEASKDSTAQPAGHMTSTAAVPPAERAEELRRLLDYHAYRYYALDAPEISDAQFDRLL 79
Query: 95 ERLDALQEQFPELFDEDHPWNTVG 118
L ++ + P+L D VG
Sbjct: 80 RELQQIEVEHPDLITPDSYTQRVG 103
>gi|126726435|ref|ZP_01742276.1| DNA ligase [Rhodobacterales bacterium HTCC2150]
gi|126704298|gb|EBA03390.1| DNA ligase [Rhodobacterales bacterium HTCC2150]
Length = 705
Score = 37.7 bits (86), Expect = 0.58, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 32/70 (45%)
Query: 49 KKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF 108
K ++ EA E++ L K+ Y+ D P +D YDR+ ++ FP+L
Sbjct: 3 KNPLDMTMAEARSELKRLAKVIAAANSSYHTADAPEISDAEYDRLRRLNSEIEAAFPDLK 62
Query: 109 DEDHPWNTVG 118
D P + VG
Sbjct: 63 RADSPSDNVG 72
>gi|323526494|ref|YP_004228647.1| NAD-dependent DNA ligase [Burkholderia sp. CCGE1001]
gi|323383496|gb|ADX55587.1| DNA ligase, NAD-dependent [Burkholderia sp. CCGE1001]
Length = 688
Score = 37.7 bits (86), Expect = 0.59, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YD++ + L++++ Q P+L D P VG
Sbjct: 32 YYVLDQPDLPDAEYDKLFKELESIEAQHPDLIVPDSPTQRVG 73
>gi|300021787|ref|YP_003754398.1| DNA ligase, NAD-dependent [Hyphomicrobium denitrificans ATCC 51888]
gi|299523608|gb|ADJ22077.1| DNA ligase, NAD-dependent [Hyphomicrobium denitrificans ATCC 51888]
Length = 712
Score = 37.7 bits (86), Expect = 0.59, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 23/46 (50%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H + YYR D P +D YD + RL L++ PEL P VG
Sbjct: 37 HDELYYRNDAPEISDADYDALRRRLTQLEDAHPELKRAGSPSEKVG 82
>gi|319789848|ref|YP_004151481.1| DNA ligase, NAD-dependent [Thermovibrio ammonificans HB-1]
gi|317114350|gb|ADU96840.1| DNA ligase, NAD-dependent [Thermovibrio ammonificans HB-1]
Length = 723
Score = 37.7 bits (86), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
LS EA E L ++ +H YY NP+ +D YD++ L+AL++ PE+ D P
Sbjct: 32 LSTEEARELAEKLRRVIRYHDYKYYVQANPVISDYQYDKLFHALEALEKAHPEVVTPDSP 91
Query: 114 WNTV 117
+
Sbjct: 92 TQRI 95
>gi|308182775|ref|YP_003926902.1| NAD-dependent DNA ligase LigA [Helicobacter pylori PeCan4]
gi|308064960|gb|ADO06852.1| NAD-dependent DNA ligase LigA [Helicobacter pylori PeCan4]
Length = 656
Score = 37.7 bits (86), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S+ E + +EYL ++ HH YY LD + +D +YD + + L A +E+ P + P
Sbjct: 4 SQKEYLERIEYLNTLS-HH---YYNLDESIVSDAVYDELYQELKAYEEKNPNSIQANSPT 59
Query: 115 NTVG 118
VG
Sbjct: 60 QKVG 63
>gi|283850424|ref|ZP_06367713.1| DNA ligase, NAD-dependent [Desulfovibrio sp. FW1012B]
gi|283574450|gb|EFC22421.1| DNA ligase, NAD-dependent [Desulfovibrio sp. FW1012B]
Length = 697
Score = 37.7 bits (86), Expect = 0.60, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 22/46 (47%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY LD+P D YD + L L+ PEL D + P VG
Sbjct: 22 HNHRYYVLDDPQIEDAAYDALYRELVTLEAAHPELADPNSPTRRVG 67
>gi|226356158|ref|YP_002785898.1| DNA ligase (NAD(+)) [Deinococcus deserti VCD115]
gi|254778151|sp|C1CVC7|DNLJ2_DEIDV RecName: Full=DNA ligase 2; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] 2
gi|226318148|gb|ACO46144.1| putative DNA ligase (NAD(+)) [Deinococcus deserti VCD115]
Length = 686
Score = 37.7 bits (86), Expect = 0.60, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H + YY D P +D YD ++ L ++ + PE ++D P T+G
Sbjct: 23 HNRAYYEQDAPEISDDEYDALARALRDMEARHPEWVEDDSPVQTIG 68
>gi|148927169|ref|ZP_01810794.1| DNA ligase, NAD-dependent [candidate division TM7 genomosp. GTL1]
gi|147887384|gb|EDK72833.1| DNA ligase, NAD-dependent [candidate division TM7 genomosp. GTL1]
Length = 675
Score = 37.7 bits (86), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D +YD + L L+ + PEL D P VG
Sbjct: 24 YYVLDRPSVADAIYDSLFGELKKLEAEHPELITADSPTQRVG 65
>gi|296158912|ref|ZP_06841740.1| DNA ligase, NAD-dependent [Burkholderia sp. Ch1-1]
gi|295890787|gb|EFG70577.1| DNA ligase, NAD-dependent [Burkholderia sp. Ch1-1]
Length = 688
Score = 37.4 bits (85), Expect = 0.60, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ + L++++ + P+L D P VG
Sbjct: 32 YYVLDQPDLPDAEYDRLFKELESIETEHPDLIVPDSPTQRVG 73
>gi|91784125|ref|YP_559331.1| NAD-dependent DNA ligase [Burkholderia xenovorans LB400]
gi|123358676|sp|Q13XB0|DNLJ_BURXL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|91688079|gb|ABE31279.1| NAD-dependent DNA ligase [Burkholderia xenovorans LB400]
Length = 688
Score = 37.4 bits (85), Expect = 0.60, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ + L++++ + P+L D P VG
Sbjct: 32 YYVLDQPDLPDAEYDRLFKELESIETEHPDLIVPDSPTQRVG 73
>gi|308184399|ref|YP_003928532.1| NAD-dependent DNA ligase LigA [Helicobacter pylori SJM180]
gi|308060319|gb|ADO02215.1| NAD-dependent DNA ligase LigA [Helicobacter pylori SJM180]
Length = 656
Score = 37.4 bits (85), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S+ E + +EYL ++ HH YY LD + +D +YD + + L A +E+ P + P
Sbjct: 4 SQKEYLERIEYLNTLS-HH---YYNLDESIVSDAVYDELYQELKAYEEENPNRIQANSPT 59
Query: 115 NTVG 118
VG
Sbjct: 60 QKVG 63
>gi|39995996|ref|NP_951947.1| DNA ligase, NAD-dependent [Geobacter sulfurreducens PCA]
gi|81702997|sp|Q74ER9|DNLJ_GEOSL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|39982761|gb|AAR34220.1| DNA ligase, NAD-dependent [Geobacter sulfurreducens PCA]
gi|298505011|gb|ADI83734.1| DNA ligase, NAD-dependent [Geobacter sulfurreducens KN400]
Length = 670
Score = 37.4 bits (85), Expect = 0.61, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 23/46 (50%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H + YY D P TD YD + L L+ +FP+L D P VG
Sbjct: 20 HNRLYYAEDRPEITDAEYDLLFRELVDLETRFPDLAAPDSPTQRVG 65
>gi|229015686|ref|ZP_04172669.1| DNA ligase [Bacillus cereus AH1273]
gi|229021878|ref|ZP_04178448.1| DNA ligase [Bacillus cereus AH1272]
gi|228739424|gb|EEL89850.1| DNA ligase [Bacillus cereus AH1272]
gi|228745603|gb|EEL95622.1| DNA ligase [Bacillus cereus AH1273]
Length = 669
Score = 37.4 bits (85), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
Y+ LDNP +D YDR + L L+ + PE ED P VG
Sbjct: 24 YHVLDNPSVSDAEYDRNMQELIKLEAENPEFMGEDSPSIRVG 65
>gi|309805852|ref|ZP_07699887.1| NAD-dependent DNA ligase adenylation domain protein [Lactobacillus
iners LactinV 03V1-b]
gi|308167761|gb|EFO69905.1| NAD-dependent DNA ligase adenylation domain protein [Lactobacillus
iners LactinV 03V1-b]
Length = 109
Score = 37.4 bits (85), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKW---YYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
++ LS +A +EV +K+ W YY D P+ D +YD+V ++L L++++P L
Sbjct: 1 MSELSLAQAKLEV---LKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVL 57
Query: 108 FDEDHPWNTVG 118
D D VG
Sbjct: 58 IDPDSITQRVG 68
>gi|163938297|ref|YP_001643181.1| NAD-dependent DNA ligase LigA [Bacillus weihenstephanensis KBAB4]
gi|229165272|ref|ZP_04293059.1| DNA ligase [Bacillus cereus AH621]
gi|254781256|sp|A9VRG3|DNLJ_BACWK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|163860494|gb|ABY41553.1| DNA ligase, NAD-dependent [Bacillus weihenstephanensis KBAB4]
gi|228618097|gb|EEK75135.1| DNA ligase [Bacillus cereus AH621]
Length = 669
Score = 37.4 bits (85), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
Y+ LDNP +D YDR + L L+ + PE ED P VG
Sbjct: 24 YHVLDNPSVSDAEYDRDMQELIKLEAENPEFMSEDSPSIRVG 65
>gi|239944478|ref|ZP_04696415.1| NAD-dependent DNA ligase LigA [Streptomyces roseosporus NRRL 15998]
gi|239990936|ref|ZP_04711600.1| NAD-dependent DNA ligase LigA [Streptomyces roseosporus NRRL 11379]
gi|291447943|ref|ZP_06587333.1| NAD-dependent DNA ligase LigA [Streptomyces roseosporus NRRL 15998]
gi|291350890|gb|EFE77794.1| NAD-dependent DNA ligase LigA [Streptomyces roseosporus NRRL 15998]
Length = 743
Score = 37.4 bits (85), Expect = 0.63, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H+ YY D P+ +D +DR+ L+AL++++P L D P V
Sbjct: 31 HRFRYYVKDQPVVSDAEFDRLLRSLEALEDEYPPLRTPDSPTQQVA 76
>gi|229055132|ref|ZP_04195560.1| DNA ligase [Bacillus cereus AH603]
gi|228721208|gb|EEL72737.1| DNA ligase [Bacillus cereus AH603]
Length = 669
Score = 37.4 bits (85), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
Y+ LDNP +D YDR + L L+ + PE ED P VG
Sbjct: 24 YHVLDNPSVSDAEYDRDMQELIKLEAENPEFMSEDSPSIRVG 65
>gi|206967609|ref|ZP_03228565.1| DNA ligase, NAD-dependent [Bacillus cereus AH1134]
gi|228950848|ref|ZP_04112971.1| DNA ligase [Bacillus thuringiensis serovar kurstaki str. T03a001]
gi|229068048|ref|ZP_04201356.1| DNA ligase [Bacillus cereus F65185]
gi|229077651|ref|ZP_04210281.1| DNA ligase [Bacillus cereus Rock4-2]
gi|229176884|ref|ZP_04304280.1| DNA ligase [Bacillus cereus 172560W]
gi|206736529|gb|EDZ53676.1| DNA ligase, NAD-dependent [Bacillus cereus AH1134]
gi|228606557|gb|EEK63982.1| DNA ligase [Bacillus cereus 172560W]
gi|228705592|gb|EEL57948.1| DNA ligase [Bacillus cereus Rock4-2]
gi|228715056|gb|EEL66923.1| DNA ligase [Bacillus cereus F65185]
gi|228808777|gb|EEM55273.1| DNA ligase [Bacillus thuringiensis serovar kurstaki str. T03a001]
Length = 669
Score = 37.4 bits (85), Expect = 0.63, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
Y+ LDNP +D YDR + L L+ + PE ED P VG
Sbjct: 24 YHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSPSVRVG 65
>gi|261401085|ref|ZP_05987210.1| DNA ligase, NAD-dependent [Neisseria lactamica ATCC 23970]
gi|269208977|gb|EEZ75432.1| DNA ligase, NAD-dependent [Neisseria lactamica ATCC 23970]
Length = 827
Score = 37.4 bits (85), Expect = 0.64, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 22/42 (52%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ L+AL+ PEL D P VG
Sbjct: 30 YYTLDAPSVPDAEYDRLFRELEALELNHPELKLPDSPTQRVG 71
>gi|229009789|ref|ZP_04167009.1| DNA ligase [Bacillus mycoides DSM 2048]
gi|228751407|gb|EEM01213.1| DNA ligase [Bacillus mycoides DSM 2048]
Length = 669
Score = 37.4 bits (85), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
Y+ LDNP +D YDR + L L+ + PE ED P VG
Sbjct: 24 YHVLDNPSVSDAEYDRDMQELIKLEAENPEFMSEDSPSIRVG 65
>gi|229188563|ref|ZP_04315602.1| DNA ligase [Bacillus cereus ATCC 10876]
gi|228594752|gb|EEK52532.1| DNA ligase [Bacillus cereus ATCC 10876]
Length = 669
Score = 37.4 bits (85), Expect = 0.64, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
Y+ LDNP +D YDR + L L+ + PE ED P VG
Sbjct: 24 YHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSPSVRVG 65
>gi|257387145|ref|YP_003176918.1| NAD-dependent DNA ligase LigA [Halomicrobium mukohataei DSM 12286]
gi|257169452|gb|ACV47211.1| DNA ligase, NAD-dependent [Halomicrobium mukohataei DSM 12286]
Length = 700
Score = 37.4 bits (85), Expect = 0.64, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 31 EAKFLPNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLY 90
EA P+ +E + + V S EA + + L + +H YY L +P+ D Y
Sbjct: 6 EATPPPDNPYVEDPPTEFEPVEDFSDDEAREQAQRLREAIRYHDHRYYVLADPVIGDRAY 65
Query: 91 DRVSERLDALQEQFPELFDEDHPWNTVG 118
D + RL+AL++ F +L E P VG
Sbjct: 66 DALFARLEALEDAF-DLDREASPTQRVG 92
>gi|229131294|ref|ZP_04260196.1| DNA ligase [Bacillus cereus BDRD-ST196]
gi|228652180|gb|EEL08115.1| DNA ligase [Bacillus cereus BDRD-ST196]
Length = 669
Score = 37.4 bits (85), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
Y+ LDNP +D YDR + L L+ + PE ED P VG
Sbjct: 24 YHVLDNPSVSDAEYDRDMQELIKLEAENPEFMSEDSPSIRVG 65
>gi|81611354|sp|Q6A7A2|DNLJ_PROAC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|50840696|gb|AAT83363.1| DNA ligase [Propionibacterium acnes KPA171202]
Length = 772
Score = 37.4 bits (85), Expect = 0.65, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 45 LDKAKKVTSLSKGEAMIEVEY----LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDAL 100
+D + + L EA E + L + L Q YY D P +D YDR+ L +
Sbjct: 34 VDDSTQGGELEASEAGAEARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKV 93
Query: 101 QEQFPELFDEDHPWNTVG 118
++ PEL D P VG
Sbjct: 94 EDDHPELRTPDSPTQRVG 111
>gi|152974127|ref|YP_001373644.1| NAD-dependent DNA ligase LigA [Bacillus cereus subsp. cytotoxis NVH
391-98]
gi|190359228|sp|A7GKJ1|DNLJ_BACCN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|152022879|gb|ABS20649.1| DNA ligase, NAD-dependent [Bacillus cytotoxicus NVH 391-98]
Length = 669
Score = 37.4 bits (85), Expect = 0.65, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 30/65 (46%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK +E L + Y+ LDNP +D YDR + L L+ + PE ED P
Sbjct: 1 MSKEAVQQRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLETENPEFITEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SVRVG 65
>gi|326390897|ref|ZP_08212448.1| DNA ligase, NAD-dependent [Thermoanaerobacter ethanolicus JW 200]
gi|325993045|gb|EGD51486.1| DNA ligase, NAD-dependent [Thermoanaerobacter ethanolicus JW 200]
Length = 662
Score = 37.4 bits (85), Expect = 0.66, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+H YY LD P +D YD + L L+E++PE D P VG
Sbjct: 16 YHNYRYYVLDQPEISDYEYDMLMRELIELEEKYPEFKTPDSPSQRVG 62
>gi|314919398|gb|EFS83229.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL050PA1]
Length = 740
Score = 37.4 bits (85), Expect = 0.66, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 45 LDKAKKVTSLSKGEAMIEVEY----LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDAL 100
+D + + L EA E + L + L Q YY D P +D YDR+ L +
Sbjct: 2 VDDSTQGGELEASEAGAEARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKV 61
Query: 101 QEQFPELFDEDHPWNTVG 118
++ PEL D P VG
Sbjct: 62 EDDHPELRTPDSPTQRVG 79
>gi|307266289|ref|ZP_07547829.1| DNA ligase, NAD-dependent [Thermoanaerobacter wiegelii Rt8.B1]
gi|306918667|gb|EFN48901.1| DNA ligase, NAD-dependent [Thermoanaerobacter wiegelii Rt8.B1]
Length = 662
Score = 37.4 bits (85), Expect = 0.66, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+H YY LD P +D YD + L L+E++PE D P VG
Sbjct: 16 YHNYRYYVLDQPEISDYEYDMLMRELIELEEKYPEFKTPDSPSQRVG 62
>gi|298369197|ref|ZP_06980515.1| DNA ligase, NAD-dependent [Neisseria sp. oral taxon 014 str. F0314]
gi|298283200|gb|EFI24687.1| DNA ligase, NAD-dependent [Neisseria sp. oral taxon 014 str. F0314]
Length = 830
Score = 37.4 bits (85), Expect = 0.66, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 28/56 (50%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++L + + YY LD P D YD++ L+AL+ PEL D P VG
Sbjct: 8 IKHLTALLNRYAYEYYTLDAPSVPDAEYDKLFRELEALERNHPELKLPDSPTQRVG 63
>gi|289428790|ref|ZP_06430473.1| DNA ligase (NAD(+)) [Propionibacterium acnes J165]
gi|289158188|gb|EFD06408.1| DNA ligase (NAD(+)) [Propionibacterium acnes J165]
Length = 753
Score = 37.4 bits (85), Expect = 0.66, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 45 LDKAKKVTSLSKGEAMIEVEY----LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDAL 100
+D + + L EA E + L + L Q YY D P +D YDR+ L +
Sbjct: 15 VDDSTQGGELEASEAGAEARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKV 74
Query: 101 QEQFPELFDEDHPWNTVG 118
++ PEL D P VG
Sbjct: 75 EDDHPELRTPDSPTQRVG 92
>gi|289426325|ref|ZP_06428068.1| DNA ligase (NAD(+)) [Propionibacterium acnes SK187]
gi|295131143|ref|YP_003581806.1| DNA ligase (NAD(+)) [Propionibacterium acnes SK137]
gi|289153053|gb|EFD01771.1| DNA ligase (NAD(+)) [Propionibacterium acnes SK187]
gi|291375741|gb|ADD99595.1| DNA ligase (NAD(+)) [Propionibacterium acnes SK137]
gi|332676019|gb|AEE72835.1| DNA ligase [Propionibacterium acnes 266]
Length = 753
Score = 37.4 bits (85), Expect = 0.66, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 45 LDKAKKVTSLSKGEAMIEVEY----LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDAL 100
+D + + L EA E + L + L Q YY D P +D YDR+ L +
Sbjct: 15 VDDSTQGGELEASEAGAEARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKV 74
Query: 101 QEQFPELFDEDHPWNTVG 118
++ PEL D P VG
Sbjct: 75 EDDHPELRTPDSPTQRVG 92
>gi|170079241|ref|YP_001735879.1| DNA ligase, NAD-dependent [Synechococcus sp. PCC 7002]
gi|254781436|sp|B1XLV0|DNLJ_SYNP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|169886910|gb|ACB00624.1| DNA ligase, NAD-dependent [Synechococcus sp. PCC 7002]
Length = 678
Score = 37.4 bits (85), Expect = 0.66, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D +YD++ L AL+ P+L D P +G
Sbjct: 23 YYVLDAPFMEDAVYDQLYRELVALETAHPQLITPDSPTQRIG 64
>gi|146301217|ref|YP_001195808.1| DNA ligase, NAD-dependent [Flavobacterium johnsoniae UW101]
gi|190359257|sp|A5FE87|DNLJ_FLAJO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|146155635|gb|ABQ06489.1| DNA ligase, NAD-dependent [Flavobacterium johnsoniae UW101]
Length = 668
Score = 37.4 bits (85), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY LDN +D +D + L L+ + PE FDED P VG
Sbjct: 16 QHNYNYYVLDNATISDYDFDIKLKELQDLENKHPEFFDEDSPTQRVG 62
>gi|149195296|ref|ZP_01872384.1| NAD-dependent DNA ligase LigA [Caminibacter mediatlanticus TB-2]
gi|149134560|gb|EDM23048.1| NAD-dependent DNA ligase LigA [Caminibacter mediatlanticus TB-2]
Length = 682
Score = 37.4 bits (85), Expect = 0.66, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 74 QKW---YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+KW YY LDNPL TD YD++ + ++ ++ P+ D+ P +G
Sbjct: 16 KKWAYYYYVLDNPLVTDEEYDKLYKEVEEYEKNHPDEVDKTSPTQRIG 63
>gi|217077826|ref|YP_002335544.1| DNA ligase, NAD-dependent [Thermosipho africanus TCF52B]
gi|254781437|sp|B7IDX6|DNLJ_THEAB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|217037681|gb|ACJ76203.1| DNA ligase, NAD-dependent [Thermosipho africanus TCF52B]
Length = 665
Score = 37.4 bits (85), Expect = 0.67, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 7/57 (12%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E+EY H YY L +P+ +D YD++ ++L L++++PE + P VG
Sbjct: 16 EIEY-------HNYRYYVLADPVISDEEYDKLLKKLIELEKKYPEFYSPTSPTQKVG 65
>gi|57241999|ref|ZP_00369939.1| DNA ligase, NAD-dependent [Campylobacter upsaliensis RM3195]
gi|57017191|gb|EAL53972.1| DNA ligase, NAD-dependent [Campylobacter upsaliensis RM3195]
Length = 644
Score = 37.4 bits (85), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 64 EYLVKIALHH--QKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
EYL K+AL + + YY D PL +D YDR+ + +++ P L D P +
Sbjct: 3 EYLKKVALANLWMRAYYEEDEPLASDEEYDRLIREIKVFEKENPSLISPDSPTQKIA 59
>gi|227551668|ref|ZP_03981717.1| DNA ligase (NAD(+)) [Enterococcus faecium TX1330]
gi|293377659|ref|ZP_06623848.1| DNA ligase (NAD(+)) [Enterococcus faecium PC4.1]
gi|227179231|gb|EEI60203.1| DNA ligase (NAD(+)) [Enterococcus faecium TX1330]
gi|292643659|gb|EFF61780.1| DNA ligase (NAD(+)) [Enterococcus faecium PC4.1]
Length = 679
Score = 37.4 bits (85), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 75 KWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ YY D P D +YD+ L A++EQ+P+L D P VG
Sbjct: 27 REYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITSDSPTQRVG 70
>gi|167624496|ref|YP_001674790.1| DNA ligase, NAD-dependent [Shewanella halifaxensis HAW-EB4]
gi|190359286|sp|B0TKB2|DNLJ_SHEHH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|167354518|gb|ABZ77131.1| DNA ligase, NAD-dependent [Shewanella halifaxensis HAW-EB4]
Length = 667
Score = 37.4 bits (85), Expect = 0.67, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 26/57 (45%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E+ L H YY D+P D YDR+ RL AL+ + P+ D P VG
Sbjct: 7 EIAQLTAELNQHNYRYYVDDSPSIPDSEYDRLLNRLKALETEHPQFCLADSPTQRVG 63
>gi|126174866|ref|YP_001051015.1| DNA ligase (NAD(+)) [Shewanella baltica OS155]
gi|125998071|gb|ABN62146.1| DNA ligase (NAD(+)) [Shewanella baltica OS155]
Length = 145
Score = 37.4 bits (85), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 23/46 (50%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY D P TD YDR+ +RL L+ +P L D P VG
Sbjct: 33 HNIRYYVDDAPSITDSEYDRLMQRLLKLEALYPHLIVADSPTQRVG 78
>gi|317495223|ref|ZP_07953593.1| DNA ligase [Gemella moribillum M424]
gi|316914645|gb|EFV36121.1| DNA ligase [Gemella moribillum M424]
Length = 663
Score = 37.4 bits (85), Expect = 0.68, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 32/57 (56%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E+ LV + + YY DNP +D YD + ++L+ L++++PE ++ P VG
Sbjct: 7 EIFKLVALLNKYSYDYYVEDNPQISDTEYDTLYKQLEKLEQEYPEFILDNSPTQRVG 63
>gi|313125027|ref|YP_004035291.1| DNA ligase, NAD-dependent [Halogeometricum borinquense DSM 11551]
gi|312291392|gb|ADQ65852.1| DNA ligase, NAD-dependent [Halogeometricum borinquense DSM 11551]
Length = 694
Score = 37.4 bits (85), Expect = 0.68, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V SLS A E L + H YY +PL D YD + RL L++ F +L DE
Sbjct: 27 VESLSAEAAEREARLLREAVREHDHRYYVAADPLVADRTYDALFNRLQELEDAF-DLDDE 85
Query: 111 DHPWNTVG 118
P VG
Sbjct: 86 SSPTRRVG 93
>gi|300704237|ref|YP_003745840.1| DNA ligase [Ralstonia solanacearum CFBP2957]
gi|299071901|emb|CBJ43230.1| DNA ligase [Ralstonia solanacearum CFBP2957]
Length = 813
Score = 37.4 bits (85), Expect = 0.68, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 22/42 (52%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ L+AL+ + P L D P VG
Sbjct: 31 YYVLDQPSVPDAEYDRLYRELEALEAEHPALRTPDSPTLRVG 72
>gi|293571852|ref|ZP_06682868.1| DNA ligase, NAD-dependent [Enterococcus faecium E980]
gi|291608106|gb|EFF37412.1| DNA ligase, NAD-dependent [Enterococcus faecium E980]
Length = 679
Score = 37.4 bits (85), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 75 KWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ YY D P D +YD+ L A++EQ+P+L D P VG
Sbjct: 27 REYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITSDSPTQRVG 70
>gi|269960659|ref|ZP_06175031.1| DNA ligase [Vibrio harveyi 1DA3]
gi|269834736|gb|EEZ88823.1| DNA ligase [Vibrio harveyi 1DA3]
Length = 670
Score = 37.4 bits (85), Expect = 0.68, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 67 VKIALH-HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+K +LH H YY DNP D YDR+ L ++ + PEL D P VG
Sbjct: 12 LKESLHYHAVRYYVEDNPEIPDAEYDRMMRELLDIEAEHPELVTVDSPSQRVG 64
>gi|257895732|ref|ZP_05675385.1| NAD-dependent DNA ligase [Enterococcus faecium Com12]
gi|257832297|gb|EEV58718.1| NAD-dependent DNA ligase [Enterococcus faecium Com12]
Length = 678
Score = 37.4 bits (85), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 75 KWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ YY D P D +YD+ L A++EQ+P+L D P VG
Sbjct: 26 REYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITSDSPTQRVG 69
>gi|313834239|gb|EFS71953.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL056PA1]
gi|314924752|gb|EFS88583.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL036PA3]
Length = 740
Score = 37.4 bits (85), Expect = 0.68, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 45 LDKAKKVTSLSKGEAMIEVEY----LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDAL 100
+D + + L EA E + L + L Q YY D P +D YDR+ L +
Sbjct: 2 VDDSTQGGELEASEAGAEARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKV 61
Query: 101 QEQFPELFDEDHPWNTVG 118
++ PEL D P VG
Sbjct: 62 EDDHPELRTPDSPTQRVG 79
>gi|313793877|gb|EFS41901.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL110PA1]
Length = 740
Score = 37.4 bits (85), Expect = 0.68, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 45 LDKAKKVTSLSKGEAMIEVEY----LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDAL 100
+D + + L EA E + L + L Q YY D P +D YDR+ L +
Sbjct: 2 VDDSTQGGELEASEAGAEARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKV 61
Query: 101 QEQFPELFDEDHPWNTVG 118
++ PEL D P VG
Sbjct: 62 EDDHPELRTPDSPTQRVG 79
>gi|293557127|ref|ZP_06675681.1| DNA ligase, NAD-dependent [Enterococcus faecium E1039]
gi|294614139|ref|ZP_06694060.1| DNA ligase, NAD-dependent [Enterococcus faecium E1636]
gi|291592989|gb|EFF24577.1| DNA ligase, NAD-dependent [Enterococcus faecium E1636]
gi|291600696|gb|EFF30994.1| DNA ligase, NAD-dependent [Enterococcus faecium E1039]
Length = 679
Score = 37.4 bits (85), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 75 KWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ YY D P D +YD+ L A++EQ+P+L D P VG
Sbjct: 27 REYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITSDSPTQRVG 70
>gi|205372454|ref|ZP_03225267.1| NAD-dependent DNA ligase LigA [Bacillus coahuilensis m4-4]
Length = 635
Score = 37.4 bits (85), Expect = 0.69, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P +D YD + L A++++FPEL D P +G
Sbjct: 24 YYVLDKPQVSDQEYDSKLQELIAIEQEFPELKTPDSPSERIG 65
>gi|195953269|ref|YP_002121559.1| DNA ligase, NAD-dependent [Hydrogenobaculum sp. Y04AAS1]
gi|254781349|sp|B4U8X0|DNLJ_HYDS0 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|195932881|gb|ACG57581.1| DNA ligase, NAD-dependent [Hydrogenobaculum sp. Y04AAS1]
Length = 700
Score = 37.4 bits (85), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 34/58 (58%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
LSK EA+ + L ++ +H YY L+ P+ +D YD + + L ++++ +P+L D
Sbjct: 28 LSKEEAIKIINTLRELINYHDYRYYVLNQPVISDAEYDAIYKFLKSIEDNYPDLITPD 85
>gi|42561289|ref|NP_975740.1| DNA ligase [Mycoplasma mycoides subsp. mycoides SC str. PG1]
gi|81400468|sp|Q6MSK8|DNLJ_MYCMS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|42492787|emb|CAE77382.1| DNA ligase [Mycoplasma mycoides subsp. mycoides SC str. PG1]
gi|301320499|gb|ADK69142.1| DNA ligase (NAD(+)) [Mycoplasma mycoides subsp. mycoides SC str.
Gladysdale]
Length = 668
Score = 37.4 bits (85), Expect = 0.69, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 32/65 (49%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK +A++ + L + K YY DNP D YD + L +L+ +PEL D P
Sbjct: 1 MSKDKALLRINQLKEQLNLWSKQYYVDDNPSVDDTEYDLALKELISLETLYPELITSDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SQKVG 65
>gi|332992914|gb|AEF02969.1| DNA ligase, NAD-dependent [Alteromonas sp. SN2]
Length = 404
Score = 37.4 bits (85), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR + L ++++QFPEL P VG
Sbjct: 26 YYVLDAPTVPDAQYDRDMQELISIEKQFPELQSVSSPSQKVG 67
>gi|313822055|gb|EFS59769.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL036PA1]
gi|313823710|gb|EFS61424.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL036PA2]
Length = 740
Score = 37.4 bits (85), Expect = 0.69, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 45 LDKAKKVTSLSKGEAMIEVEY----LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDAL 100
+D + + L EA E + L + L Q YY D P +D YDR+ L +
Sbjct: 2 VDDSTQGGELEASEAGAEARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKV 61
Query: 101 QEQFPELFDEDHPWNTVG 118
++ PEL D P VG
Sbjct: 62 EDDHPELRTPDSPTQRVG 79
>gi|313763487|gb|EFS34851.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL013PA1]
gi|313773641|gb|EFS39607.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL074PA1]
gi|313801268|gb|EFS42519.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL110PA2]
gi|313808052|gb|EFS46533.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL087PA2]
gi|313811476|gb|EFS49190.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL083PA1]
gi|313813500|gb|EFS51214.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL025PA1]
gi|313816668|gb|EFS54382.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL059PA1]
gi|313819621|gb|EFS57335.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL046PA2]
gi|313826033|gb|EFS63747.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL063PA1]
gi|313829503|gb|EFS67217.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL063PA2]
gi|313831217|gb|EFS68931.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL007PA1]
gi|313840009|gb|EFS77723.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL086PA1]
gi|314914784|gb|EFS78615.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL005PA4]
gi|314920694|gb|EFS84525.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL050PA3]
gi|314930573|gb|EFS94404.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL067PA1]
gi|314954471|gb|EFS98877.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL027PA1]
gi|314961961|gb|EFT06062.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL002PA2]
gi|314963768|gb|EFT07868.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL082PA1]
gi|314968405|gb|EFT12503.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL037PA1]
gi|314974093|gb|EFT18189.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL053PA1]
gi|314976617|gb|EFT20712.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL045PA1]
gi|314978931|gb|EFT23025.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL072PA2]
gi|314984280|gb|EFT28372.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL005PA1]
gi|314986627|gb|EFT30719.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL005PA2]
gi|314990983|gb|EFT35074.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL005PA3]
gi|315079616|gb|EFT51609.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL053PA2]
gi|315081153|gb|EFT53129.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL078PA1]
gi|315087038|gb|EFT59014.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL002PA3]
gi|315089213|gb|EFT61189.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL072PA1]
gi|315095437|gb|EFT67413.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL038PA1]
gi|315099114|gb|EFT71090.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL059PA2]
gi|315100402|gb|EFT72378.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL046PA1]
gi|315109094|gb|EFT81070.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL030PA2]
gi|327328505|gb|EGE70267.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL096PA2]
gi|327329632|gb|EGE71388.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL096PA3]
gi|327334143|gb|EGE75857.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL097PA1]
gi|327444292|gb|EGE90946.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL043PA2]
gi|327444828|gb|EGE91482.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL043PA1]
gi|327446317|gb|EGE92971.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL013PA2]
gi|327452096|gb|EGE98750.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL092PA1]
gi|327454866|gb|EGF01521.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL087PA3]
gi|327457850|gb|EGF04505.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL083PA2]
gi|328752459|gb|EGF66075.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL020PA1]
gi|328755302|gb|EGF68918.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL087PA1]
gi|328758217|gb|EGF71833.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL025PA2]
gi|328759940|gb|EGF73524.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL099PA1]
Length = 740
Score = 37.4 bits (85), Expect = 0.69, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 45 LDKAKKVTSLSKGEAMIEVEY----LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDAL 100
+D + + L EA E + L + L Q YY D P +D YDR+ L +
Sbjct: 2 VDDSTQGGELEASEAGAEARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKV 61
Query: 101 QEQFPELFDEDHPWNTVG 118
++ PEL D P VG
Sbjct: 62 EDDHPELRTPDSPTQRVG 79
>gi|290580089|ref|YP_003484481.1| DNA ligase [Streptococcus mutans NN2025]
gi|254996988|dbj|BAH87589.1| DNA ligase [Streptococcus mutans NN2025]
Length = 652
Score = 37.4 bits (85), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV++ + + YY DNP +D YD++ L L+++FPE + P + VG
Sbjct: 8 LVQLLNQYAREYYTKDNPSVSDAEYDKLYRELVELEKEFPEDILSNSPTHRVG 60
>gi|296171259|ref|ZP_06852663.1| DNA ligase [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295894227|gb|EFG73984.1| DNA ligase [Mycobacterium parascrofulaceum ATCC BAA-614]
Length = 693
Score = 37.4 bits (85), Expect = 0.70, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HQ YY D P+ +D +D + L AL++++PEL D P VG
Sbjct: 27 HQFRYYIKDAPIVSDAEFDTMFNDLLALEDRYPELRVPDSPTQLVG 72
>gi|257884412|ref|ZP_05664065.1| NAD-dependent DNA ligase [Enterococcus faecium 1,231,501]
gi|257898303|ref|ZP_05677956.1| NAD-dependent DNA ligase [Enterococcus faecium Com15]
gi|257820250|gb|EEV47398.1| NAD-dependent DNA ligase [Enterococcus faecium 1,231,501]
gi|257836215|gb|EEV61289.1| NAD-dependent DNA ligase [Enterococcus faecium Com15]
Length = 678
Score = 37.4 bits (85), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 75 KWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ YY D P D +YD+ L A++EQ+P+L D P VG
Sbjct: 26 REYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITSDSPTQRVG 69
>gi|161621794|ref|YP_056321.2| NAD-dependent DNA ligase LigA [Propionibacterium acnes KPA171202]
gi|315106904|gb|EFT78880.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL030PA1]
Length = 740
Score = 37.4 bits (85), Expect = 0.70, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 45 LDKAKKVTSLSKGEAMIEVEY----LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDAL 100
+D + + L EA E + L + L Q YY D P +D YDR+ L +
Sbjct: 2 VDDSTQGGELEASEAGAEARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKV 61
Query: 101 QEQFPELFDEDHPWNTVG 118
++ PEL D P VG
Sbjct: 62 EDDHPELRTPDSPTQRVG 79
>gi|332188479|ref|ZP_08390201.1| DNA ligase, NAD-dependent [Sphingomonas sp. S17]
gi|332011491|gb|EGI53574.1| DNA ligase, NAD-dependent [Sphingomonas sp. S17]
Length = 712
Score = 37.4 bits (85), Expect = 0.72, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH + Y+ D P +D YD + R A++ FP L D P VG
Sbjct: 27 HHNRLYHTEDAPEISDADYDALIRRNMAIEAAFPHLIRSDSPNRQVG 73
>gi|293569137|ref|ZP_06680444.1| DNA ligase, NAD-dependent [Enterococcus faecium E1071]
gi|291588184|gb|EFF20025.1| DNA ligase, NAD-dependent [Enterococcus faecium E1071]
Length = 679
Score = 37.4 bits (85), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 75 KWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ YY D P D +YD+ L A++EQ+P+L D P VG
Sbjct: 27 REYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITSDSPTQRVG 70
>gi|257887196|ref|ZP_05666849.1| NAD-dependent DNA ligase [Enterococcus faecium 1,141,733]
gi|257823250|gb|EEV50182.1| NAD-dependent DNA ligase [Enterococcus faecium 1,141,733]
Length = 678
Score = 37.4 bits (85), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 75 KWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ YY D P D +YD+ L A++EQ+P+L D P VG
Sbjct: 26 REYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITSDSPTQRVG 69
>gi|257882881|ref|ZP_05662534.1| NAD-dependent DNA ligase [Enterococcus faecium 1,231,502]
gi|257818539|gb|EEV45867.1| NAD-dependent DNA ligase [Enterococcus faecium 1,231,502]
Length = 674
Score = 37.4 bits (85), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 75 KWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ YY D P D +YD+ L A++EQ+P+L D P VG
Sbjct: 22 REYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITSDSPTQRVG 65
>gi|69246831|ref|ZP_00604140.1| NAD-dependent DNA ligase [Enterococcus faecium DO]
gi|260560049|ref|ZP_05832227.1| NAD-dependent DNA ligase [Enterococcus faecium C68]
gi|293559999|ref|ZP_06676507.1| DNA ligase, NAD-dependent [Enterococcus faecium E1162]
gi|294621040|ref|ZP_06700232.1| DNA ligase, NAD-dependent [Enterococcus faecium U0317]
gi|314937827|ref|ZP_07845144.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133a04]
gi|314941627|ref|ZP_07848507.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133C]
gi|314948874|ref|ZP_07852243.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0082]
gi|314951008|ref|ZP_07854075.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133A]
gi|314993009|ref|ZP_07858405.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133B]
gi|314996456|ref|ZP_07861499.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133a01]
gi|68195064|gb|EAN09526.1| NAD-dependent DNA ligase [Enterococcus faecium DO]
gi|260073884|gb|EEW62208.1| NAD-dependent DNA ligase [Enterococcus faecium C68]
gi|291599354|gb|EFF30379.1| DNA ligase, NAD-dependent [Enterococcus faecium U0317]
gi|291606087|gb|EFF35513.1| DNA ligase, NAD-dependent [Enterococcus faecium E1162]
gi|313589438|gb|EFR68283.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133a01]
gi|313592532|gb|EFR71377.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133B]
gi|313596863|gb|EFR75708.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133A]
gi|313599518|gb|EFR78361.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133C]
gi|313642858|gb|EFS07438.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133a04]
gi|313644664|gb|EFS09244.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0082]
Length = 679
Score = 37.4 bits (85), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 75 KWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ YY D P D +YD+ L A++EQ+P+L D P VG
Sbjct: 27 REYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITSDSPTQRVG 70
>gi|186476101|ref|YP_001857571.1| DNA ligase, NAD-dependent [Burkholderia phymatum STM815]
gi|254781277|sp|B2JID1|DNLJ_BURP8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|184192560|gb|ACC70525.1| DNA ligase, NAD-dependent [Burkholderia phymatum STM815]
Length = 683
Score = 37.4 bits (85), Expect = 0.72, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ + L ++ + P+L D P VG
Sbjct: 32 YYVLDQPDLPDAEYDRLFKELQQIESEHPDLITPDSPTQRVG 73
>gi|257878462|ref|ZP_05658115.1| NAD-dependent DNA ligase [Enterococcus faecium 1,230,933]
gi|257889341|ref|ZP_05668994.1| NAD-dependent DNA ligase [Enterococcus faecium 1,231,410]
gi|257894353|ref|ZP_05674006.1| NAD-dependent DNA ligase [Enterococcus faecium 1,231,408]
gi|258616016|ref|ZP_05713786.1| DNA ligase, NAD-dependent [Enterococcus faecium DO]
gi|257812690|gb|EEV41448.1| NAD-dependent DNA ligase [Enterococcus faecium 1,230,933]
gi|257825701|gb|EEV52327.1| NAD-dependent DNA ligase [Enterococcus faecium 1,231,410]
gi|257830732|gb|EEV57339.1| NAD-dependent DNA ligase [Enterococcus faecium 1,231,408]
Length = 678
Score = 37.4 bits (85), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 75 KWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ YY D P D +YD+ L A++EQ+P+L D P VG
Sbjct: 26 REYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITSDSPTQRVG 69
>gi|197336238|ref|YP_002156719.1| DNA ligase, NAD-dependent [Vibrio fischeri MJ11]
gi|254781450|sp|B5FGU7|DNLJ_VIBFM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|197317728|gb|ACH67175.1| DNA ligase, NAD-dependent [Vibrio fischeri MJ11]
Length = 668
Score = 37.4 bits (85), Expect = 0.73, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+H YY D+P D YDR+ + L +++ + PEL D P VG
Sbjct: 16 YHAYRYYVEDSPELPDAEYDRMMQELLSIESEHPELVTVDSPSQRVG 62
>gi|261207462|ref|ZP_05922148.1| NAD-dependent DNA ligase [Enterococcus faecium TC 6]
gi|289565873|ref|ZP_06446314.1| DNA ligase, NAD-dependent [Enterococcus faecium D344SRF]
gi|294618097|ref|ZP_06697694.1| DNA ligase, NAD-dependent [Enterococcus faecium E1679]
gi|260078353|gb|EEW66058.1| NAD-dependent DNA ligase [Enterococcus faecium TC 6]
gi|289162333|gb|EFD10192.1| DNA ligase, NAD-dependent [Enterococcus faecium D344SRF]
gi|291595669|gb|EFF26965.1| DNA ligase, NAD-dependent [Enterococcus faecium E1679]
Length = 679
Score = 37.4 bits (85), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 75 KWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ YY D P D +YD+ L A++EQ+P+L D P VG
Sbjct: 27 REYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITSDSPTQRVG 70
>gi|229137130|ref|ZP_04265749.1| DNA ligase [Bacillus cereus BDRD-ST26]
gi|228646302|gb|EEL02517.1| DNA ligase [Bacillus cereus BDRD-ST26]
Length = 74
Score = 37.4 bits (85), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
Y+ LDNP +D YDR + L L+ + PE ED P VG
Sbjct: 24 YHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSPSVRVG 65
>gi|291538763|emb|CBL11874.1| DNA ligase, NAD-dependent [Roseburia intestinalis XB6B4]
Length = 671
Score = 37.4 bits (85), Expect = 0.74, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+H YY D+P +D +D + ++L L+++ PEL +D P VG
Sbjct: 16 YHSDRYYNQDSPEISDYEFDMLMQQLKKLEKEHPELVTKDSPTQHVG 62
>gi|291536367|emb|CBL09479.1| DNA ligase, NAD-dependent [Roseburia intestinalis M50/1]
Length = 671
Score = 37.4 bits (85), Expect = 0.74, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+H YY D+P +D +D + ++L L+++ PEL +D P VG
Sbjct: 16 YHSDRYYNQDSPEISDYEFDMLMQQLKKLEKEHPELVTKDSPTQHVG 62
>gi|88810628|ref|ZP_01125885.1| DNA ligase, NAD-dependent [Nitrococcus mobilis Nb-231]
gi|88792258|gb|EAR23368.1| DNA ligase, NAD-dependent [Nitrococcus mobilis Nb-231]
Length = 672
Score = 37.4 bits (85), Expect = 0.74, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H Y+ LD+P +D YD + L AL+ P+L D P VG
Sbjct: 22 QHNYRYFVLDDPQVSDADYDVLMRELQALEADHPDLVSPDSPTQRVG 68
>gi|331015921|gb|EGH95977.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. lachrymans
str. M302278PT]
Length = 787
Score = 37.4 bits (85), Expect = 0.75, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 22/47 (46%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H Y+ LD P D YDR+ L AL+ + P L D P VG
Sbjct: 17 QHNYRYHVLDEPSIPDAEYDRLFHELKALEAENPHLVTPDSPTQRVG 63
>gi|330963250|gb|EGH63510.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. actinidiae
str. M302091]
Length = 787
Score = 37.4 bits (85), Expect = 0.75, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 22/47 (46%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H Y+ LD P D YDR+ L AL+ + P L D P VG
Sbjct: 17 QHNYRYHVLDEPSIPDAEYDRLFHELKALEAENPHLVTPDSPTQRVG 63
>gi|240145659|ref|ZP_04744260.1| DNA ligase, NAD-dependent [Roseburia intestinalis L1-82]
gi|257202247|gb|EEV00532.1| DNA ligase, NAD-dependent [Roseburia intestinalis L1-82]
Length = 671
Score = 37.4 bits (85), Expect = 0.75, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+H YY D+P +D +D + ++L L+++ PEL +D P VG
Sbjct: 16 YHSDRYYNQDSPEISDYEFDMLMQQLKKLEKEHPELVTKDSPTQHVG 62
>gi|213968905|ref|ZP_03397045.1| DNA ligase, NAD-dependent [Pseudomonas syringae pv. tomato T1]
gi|301385372|ref|ZP_07233790.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. tomato
Max13]
gi|302063632|ref|ZP_07255173.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. tomato K40]
gi|302133897|ref|ZP_07259887.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|213926204|gb|EEB59759.1| DNA ligase, NAD-dependent [Pseudomonas syringae pv. tomato T1]
Length = 787
Score = 37.4 bits (85), Expect = 0.75, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 22/47 (46%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H Y+ LD P D YDR+ L AL+ + P L D P VG
Sbjct: 17 QHNYRYHVLDEPSIPDAEYDRLFHELKALEAENPHLVTPDSPTQRVG 63
>gi|28870811|ref|NP_793430.1| NAD-dependent DNA ligase [Pseudomonas syringae pv. tomato str.
DC3000]
gi|81730313|sp|Q87YY6|DNLJ_PSESM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|28854060|gb|AAO57125.1| DNA ligase, NAD-dependent [Pseudomonas syringae pv. tomato str.
DC3000]
Length = 787
Score = 37.4 bits (85), Expect = 0.75, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 22/47 (46%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H Y+ LD P D YDR+ L AL+ + P L D P VG
Sbjct: 17 QHNYRYHVLDEPSIPDAEYDRLFHELKALEAENPHLVTPDSPTQRVG 63
>gi|87123447|ref|ZP_01079298.1| BRCT domain:NAD-dependent DNA ligase N-terminus [Synechococcus sp.
RS9917]
gi|86169167|gb|EAQ70423.1| BRCT domain:NAD-dependent DNA ligase N-terminus [Synechococcus sp.
RS9917]
Length = 694
Score = 37.4 bits (85), Expect = 0.75, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
GE E+ L+ A H YY LD P D +YDR+ L L++ P L D P
Sbjct: 6 GERARELRTLLNRAAHA---YYVLDAPEMEDPVYDRLYRELVELEQADPSLCSPDSPTQR 62
Query: 117 VG 118
VG
Sbjct: 63 VG 64
>gi|330879146|gb|EGH13295.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
Length = 787
Score = 37.4 bits (85), Expect = 0.76, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 22/47 (46%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H Y+ LD P D YDR+ L AL+ + P L D P VG
Sbjct: 17 QHNYRYHVLDEPSIPDAEYDRLFHELKALEAENPHLVTPDSPTQRVG 63
>gi|225377122|ref|ZP_03754343.1| hypothetical protein ROSEINA2194_02767 [Roseburia inulinivorans DSM
16841]
gi|225211027|gb|EEG93381.1| hypothetical protein ROSEINA2194_02767 [Roseburia inulinivorans DSM
16841]
Length = 668
Score = 37.4 bits (85), Expect = 0.76, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K A + L K +H YY D+P +D YD + + L L+++ PEL D P
Sbjct: 1 MKKMSAEERIAELKKTLEYHIDRYYNQDSPEISDYEYDMMMQELKNLEKEHPELVTPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|307637302|gb|ADN79752.1| NAD-dependent DNA ligase [Helicobacter pylori 908]
gi|325995893|gb|ADZ51298.1| DNA ligase [Helicobacter pylori 2018]
gi|325997488|gb|ADZ49696.1| NAD-dependent DNA ligase [Helicobacter pylori 2017]
Length = 656
Score = 37.4 bits (85), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S+ E + +EYL ++ HH YY LD + +D +YD + + L A +E+ P + P
Sbjct: 4 SQKEYLERIEYLNTLS-HH---YYNLDESIVSDAVYDELYQELKAYEEENPNHIQANSPT 59
Query: 115 NTVG 118
VG
Sbjct: 60 QKVG 63
>gi|315180839|gb|ADT87753.1| DNA ligase [Vibrio furnissii NCTC 11218]
Length = 669
Score = 37.4 bits (85), Expect = 0.77, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 67 VKIALH-HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+K LH H YY D+P D YDR+ L L+ + PEL D P VG
Sbjct: 11 LKDTLHYHAIRYYVEDDPTIPDAEYDRLMRELLDLEARHPELVTPDSPSQRVG 63
>gi|254479199|ref|ZP_05092546.1| NAD-dependent DNA ligase adenylation domain subfamily
[Carboxydibrachium pacificum DSM 12653]
gi|214034862|gb|EEB75589.1| NAD-dependent DNA ligase adenylation domain subfamily
[Carboxydibrachium pacificum DSM 12653]
Length = 271
Score = 37.0 bits (84), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 32/65 (49%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + EA +E L + +H YY LD P +D YD + L L+E++PE D P
Sbjct: 15 MDREEARKRIEELREKINYHNYRYYVLDQPEISDYEYDMLMRELIELEEKYPEFKTPDSP 74
Query: 114 WNTVG 118
VG
Sbjct: 75 SQRVG 79
>gi|198274661|ref|ZP_03207193.1| hypothetical protein BACPLE_00817 [Bacteroides plebeius DSM 17135]
gi|198272108|gb|EDY96377.1| hypothetical protein BACPLE_00817 [Bacteroides plebeius DSM 17135]
Length = 666
Score = 37.0 bits (84), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 60 MIEVEYLVKI--ALH-HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
M E+E + ++ LH H YY L+ P +D +DR+ L L+ + PE +DE+ P
Sbjct: 1 MTEIERIDQLREELHTHNHNYYILNAPTISDQEFDRLMRELQDLEAKHPEHYDENSPSVR 60
Query: 117 VG 118
VG
Sbjct: 61 VG 62
>gi|224437677|ref|ZP_03658624.1| NAD-dependent DNA ligase LigA [Helicobacter cinaedi CCUG 18818]
gi|313144124|ref|ZP_07806317.1| DNA ligase [Helicobacter cinaedi CCUG 18818]
gi|313129155|gb|EFR46772.1| DNA ligase [Helicobacter cinaedi CCUG 18818]
Length = 651
Score = 37.0 bits (84), Expect = 0.79, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+++ E ++ L K+A H YY LD+P+ TD YD + ++ + Q P L + P
Sbjct: 1 MTQQEYSSNIQKLTKMAYH----YYVLDDPIATDSQYDELYHQVLNFERQNPILISPNSP 56
Query: 114 WNTVG 118
VG
Sbjct: 57 TQRVG 61
>gi|94310370|ref|YP_583580.1| DNA ligase, NAD-dependent [Cupriavidus metallidurans CH34]
gi|123383876|sp|Q1LNG5|DNLJ_RALME RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|93354222|gb|ABF08311.1| DNA ligase, NAD(+)-dependent [Cupriavidus metallidurans CH34]
Length = 721
Score = 37.0 bits (84), Expect = 0.79, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 21/42 (50%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YD + L AL+ + PEL D P VG
Sbjct: 38 YYVLDAPTIPDADYDALFIELQALEAEHPELLTPDSPTQRVG 79
>gi|23013561|ref|ZP_00053441.1| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II)
[Magnetospirillum magnetotacticum MS-1]
Length = 696
Score = 37.0 bits (84), Expect = 0.79, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
L+ EA IE LV+ + + Y+ D PL D +YD RL ++ +FPEL
Sbjct: 11 LTPFEARIEHAELVEKLVSWDEAYHGQDAPLVPDDVYDGAKRRLSGIEARFPEL 64
>gi|312863154|ref|ZP_07723392.1| DNA ligase (NAD+) [Streptococcus vestibularis F0396]
gi|322516268|ref|ZP_08069198.1| NAD-dependent DNA ligase LigA [Streptococcus vestibularis ATCC
49124]
gi|311100690|gb|EFQ58895.1| DNA ligase (NAD+) [Streptococcus vestibularis F0396]
gi|322125241|gb|EFX96614.1| NAD-dependent DNA ligase LigA [Streptococcus vestibularis ATCC
49124]
Length = 652
Score = 37.0 bits (84), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ K YY DNP +D YD++ L L+ + PEL D P + VG
Sbjct: 14 QYAKEYYTEDNPSVSDADYDKLYRELVDLEVEHPELVQADSPTHRVG 60
>gi|260363295|ref|ZP_05776162.1| DNA ligase (NAD+) [Vibrio parahaemolyticus K5030]
gi|308113593|gb|EFO51133.1| DNA ligase (NAD+) [Vibrio parahaemolyticus K5030]
Length = 655
Score = 37.0 bits (84), Expect = 0.80, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+H YY DNP D YDR+ L ++ Q P+L D P VG
Sbjct: 3 YHAVRYYVEDNPEIPDAEYDRLMRELLEIEAQHPDLVTVDSPSQRVG 49
>gi|237745525|ref|ZP_04576005.1| DNA ligase [Oxalobacter formigenes HOxBLS]
gi|229376876|gb|EEO26967.1| DNA ligase [Oxalobacter formigenes HOxBLS]
Length = 685
Score = 37.0 bits (84), Expect = 0.80, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 21/42 (50%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P+ D YDRV L L+ +PEL P VG
Sbjct: 33 YYVLDAPVVPDAEYDRVFRELQELEAAYPELVVPGSPTQRVG 74
>gi|289626390|ref|ZP_06459344.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. aesculi
str. NCPPB3681]
gi|330866315|gb|EGH01024.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. aesculi
str. 0893_23]
Length = 787
Score = 37.0 bits (84), Expect = 0.81, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 22/46 (47%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY LD P D YDR+ L AL+ + P L D P VG
Sbjct: 18 HNYRYYVLDEPSIPDVEYDRLFHELKALEVENPHLVTPDSPTQRVG 63
>gi|313891779|ref|ZP_07825384.1| DNA ligase (NAD+) [Dialister microaerophilus UPII 345-E]
gi|313119773|gb|EFR42960.1| DNA ligase (NAD+) [Dialister microaerophilus UPII 345-E]
Length = 666
Score = 37.0 bits (84), Expect = 0.81, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E + +V+ L + +H YY LD P +D +D++ L + ++PEL D P V
Sbjct: 5 EIISKVKKLREELRYHSYLYYVLDKPEISDFEFDKMYRELVDFESKYPELITPDSPTQRV 64
Query: 118 G 118
G
Sbjct: 65 G 65
>gi|256852262|ref|ZP_05557648.1| DNA ligase, NAD-dependent [Lactobacillus jensenii 27-2-CHN]
gi|260661706|ref|ZP_05862617.1| DNA ligase, NAD-dependent [Lactobacillus jensenii 115-3-CHN]
gi|282934844|ref|ZP_06340077.1| DNA ligase (NAD(+)) [Lactobacillus jensenii 208-1]
gi|297205571|ref|ZP_06922967.1| NAD-dependent DNA ligase LigA [Lactobacillus jensenii JV-V16]
gi|256615308|gb|EEU20499.1| DNA ligase, NAD-dependent [Lactobacillus jensenii 27-2-CHN]
gi|260547453|gb|EEX23432.1| DNA ligase, NAD-dependent [Lactobacillus jensenii 115-3-CHN]
gi|281301075|gb|EFA93386.1| DNA ligase (NAD(+)) [Lactobacillus jensenii 208-1]
gi|297150149|gb|EFH30446.1| NAD-dependent DNA ligase LigA [Lactobacillus jensenii JV-V16]
Length = 669
Score = 37.0 bits (84), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 33/65 (50%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
L+K A E+E L K + YY D P D +YD+ ++L L++QFPEL D
Sbjct: 4 LNKKNAQEEIETLRKKLNTWAEQYYAQDAPSVEDAVYDQNYQKLVELEKQFPELVTPDSI 63
Query: 114 WNTVG 118
VG
Sbjct: 64 TQRVG 68
>gi|261366975|ref|ZP_05979858.1| DNA ligase, NAD-dependent [Subdoligranulum variabile DSM 15176]
gi|282571093|gb|EFB76628.1| DNA ligase, NAD-dependent [Subdoligranulum variabile DSM 15176]
Length = 661
Score = 37.0 bits (84), Expect = 0.81, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + +A E L + + + YY D P D YD ++ L A++ +FP+L + P
Sbjct: 1 MEREQAQKRAEELRAVIEKNNRLYYDQDAPELEDFEYDALTRELKAIETEFPDLVTPESP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQHVG 65
>gi|317401960|gb|EFV82562.1| DNA ligase [Achromobacter xylosoxidans C54]
Length = 699
Score = 37.0 bits (84), Expect = 0.82, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 22/47 (46%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY D+P +D YDR+ L L+ PEL + P VG
Sbjct: 22 QHNVRYYVYDDPSISDAEYDRLMRELQDLEAAHPELVTPESPTQRVG 68
>gi|88855225|ref|ZP_01129890.1| DNA ligase [marine actinobacterium PHSC20C1]
gi|88815753|gb|EAR25610.1| DNA ligase [marine actinobacterium PHSC20C1]
Length = 775
Score = 37.0 bits (84), Expect = 0.83, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 28/57 (49%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
EV L L + YY D L D YD + +RL+ L+ + PEL +D P VG
Sbjct: 32 EVGTLSTRILELRDAYYERDEVLVDDAEYDELIQRLERLEREHPELQSQDSPTLRVG 88
>gi|220912112|ref|YP_002487421.1| DNA ligase, NAD-dependent [Arthrobacter chlorophenolicus A6]
gi|254778146|sp|B8HFJ3|DNLJ1_ARTCA RecName: Full=DNA ligase 1; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] 1
gi|219858990|gb|ACL39332.1| DNA ligase, NAD-dependent [Arthrobacter chlorophenolicus A6]
Length = 770
Score = 37.0 bits (84), Expect = 0.83, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 29/57 (50%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E E L + ++ YY+ D PL +D +D + RL+ ++ PEL D P VG
Sbjct: 32 EYENLSDLIRKYRFAYYQDDAPLVSDAEFDTLFRRLEEIEALHPELVANDSPTQEVG 88
>gi|117926963|ref|YP_867580.1| Fis family transcriptional regulator [Magnetococcus sp. MC-1]
gi|166215818|sp|A0LDY1|DNLJ_MAGSM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|117610719|gb|ABK46174.1| transcriptional regulator, Fis family [Magnetococcus sp. MC-1]
Length = 768
Score = 37.0 bits (84), Expect = 0.83, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H+ Y+ LD L +D YDR+ L +L+ P L D P + VG
Sbjct: 15 HYAHSYHTLDTSLVSDAEYDRLFRELQSLEAADPTLISADSPTHRVG 61
>gi|330830678|ref|YP_004393630.1| NAD-dependent DNA ligase LigA [Aeromonas veronii B565]
gi|328805814|gb|AEB51013.1| NAD-dependent DNA ligase LigA [Aeromonas veronii B565]
Length = 787
Score = 37.0 bits (84), Expect = 0.84, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HQ YY LDNP D YDR+ L AL+ PEL P VG
Sbjct: 20 HQ--YYVLDNPTVPDAEYDRLMRELIALEADHPELKTPASPSVRVG 63
>gi|297202535|ref|ZP_06919932.1| DNA ligase, NAD-dependent [Streptomyces sviceus ATCC 29083]
gi|197709937|gb|EDY53971.1| DNA ligase, NAD-dependent [Streptomyces sviceus ATCC 29083]
Length = 730
Score = 37.0 bits (84), Expect = 0.84, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H+ YY D P+ +D +D++ L+AL++++PEL D P V
Sbjct: 29 HRFRYYVNDAPVVSDADFDKLLRSLEALEDEYPELRTPDSPTQKVA 74
>gi|325110927|ref|YP_004271995.1| DNA ligase [Planctomyces brasiliensis DSM 5305]
gi|324971195|gb|ADY61973.1| DNA ligase [Planctomyces brasiliensis DSM 5305]
Length = 675
Score = 37.0 bits (84), Expect = 0.86, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 23/46 (50%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H + YY P TD +DR+ RL L++Q PE D P VG
Sbjct: 19 HNRLYYVEAQPEITDREFDRLLNRLIDLEQQHPEFQSPDSPTQKVG 64
>gi|326804258|ref|YP_004322076.1| DNA ligase (NAD+) [Aerococcus urinae ACS-120-V-Col10a]
gi|326651204|gb|AEA01387.1| DNA ligase (NAD+) [Aerococcus urinae ACS-120-V-Col10a]
Length = 677
Score = 37.0 bits (84), Expect = 0.86, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P +D YD+ +L+ L+ P+L D P VG
Sbjct: 32 YYVLDQPSVSDDHYDKTYRQLEELEASHPDLIQSDSPTQRVG 73
>gi|312114833|ref|YP_004012429.1| DNA ligase, NAD-dependent [Rhodomicrobium vannielii ATCC 17100]
gi|311219962|gb|ADP71330.1| DNA ligase, NAD-dependent [Rhodomicrobium vannielii ATCC 17100]
Length = 777
Score = 37.0 bits (84), Expect = 0.86, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 49 KKVTSLSKGEAMIEVEYLV-KIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
K LS +A E + L +IA H Y+ P +D YDR+ RL+AL+ FP L
Sbjct: 54 KHAEHLSAEDAKDEHDALAAEIARH--DLLYQDAAPEISDAEYDRLRLRLNALEAAFPSL 111
Query: 108 FDEDHPWNTVG 118
+ P TVG
Sbjct: 112 ITPESPSQTVG 122
>gi|224372650|ref|YP_002607022.1| NAD-dependent DNA ligase LigA [Nautilia profundicola AmH]
gi|254781379|sp|B9L8R4|DNLJ_NAUPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|223589900|gb|ACM93636.1| DNA ligase, NAD-dependent [Nautilia profundicola AmH]
Length = 656
Score = 37.0 bits (84), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 76 WYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+YY LDNPL TD YD++ ++ +++ P+ D P VG
Sbjct: 21 YYYVLDNPLVTDEEYDKLYHEVEEYEKKHPDKIDPTSPTQRVG 63
>gi|161760708|ref|YP_062356.2| NAD-dependent DNA ligase LigA [Leifsonia xyli subsp. xyli str.
CTCB07]
Length = 755
Score = 37.0 bits (84), Expect = 0.86, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 32/62 (51%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+A E + L L + YY LD L +D YDR+ RL+ L+ PEL +D P T
Sbjct: 11 ADARAEAQGLTTRILELRDAYYELDTVLVSDEEYDRMLRRLEELERLHPELQSQDSPTQT 70
Query: 117 VG 118
VG
Sbjct: 71 VG 72
>gi|291299865|ref|YP_003511143.1| DNA ligase NAD-dependent [Stackebrandtia nassauensis DSM 44728]
gi|290569085|gb|ADD42050.1| DNA ligase, NAD-dependent [Stackebrandtia nassauensis DSM 44728]
Length = 749
Score = 37.0 bits (84), Expect = 0.87, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H++ Y+R D P +D YD + L A++E P L +D P VG
Sbjct: 32 HRQLYHRDDAPQISDAEYDALMRELLAIEEAHPVLATQDSPSQQVG 77
>gi|206890248|ref|YP_002249789.1| DNA ligase, NAD-dependent [Thermodesulfovibrio yellowstonii DSM
11347]
gi|254781443|sp|B5YIF8|DNLJ_THEYD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|206742186|gb|ACI21243.1| DNA ligase, NAD-dependent [Thermodesulfovibrio yellowstonii DSM
11347]
Length = 670
Score = 37.0 bits (84), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E+E LVK +H YY LD+P+ +D YD + RL L+E++ + D P VG
Sbjct: 11 EIEKLVKELNYHNYRYYVLDSPVISDEEYDMMLRRLKELEEKWGYILP-DSPTQRVG 66
>gi|281414409|ref|ZP_06246151.1| DNA ligase, NAD-dependent [Micrococcus luteus NCTC 2665]
Length = 248
Score = 37.0 bits (84), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E E LV+ + YY+ D P +D YD + RL+ L+ PEL D P VG
Sbjct: 24 EYEDLVERVRAARTAYYQRDAPEISDAEYDALYRRLEDLEALHPELVSNDSPTQEVG 80
>gi|218710253|ref|YP_002417874.1| NAD-dependent DNA ligase LigA [Vibrio splendidus LGP32]
gi|254782307|sp|B7VIK3|DNLJ_VIBSL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|218323272|emb|CAV19449.1| DNA ligase [Vibrio splendidus LGP32]
Length = 670
Score = 37.0 bits (84), Expect = 0.88, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 32/63 (50%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
K + +E L + +H YY D+P D YDR+ ++L ++++ PEL D P
Sbjct: 2 KESIQVTLEQLRETLHYHAVRYYVEDSPEIPDVEYDRLMQQLLKIEDENPELVTVDSPSQ 61
Query: 116 TVG 118
VG
Sbjct: 62 RVG 64
>gi|81390835|sp|Q6AEE5|DNLJ_LEIXX RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|50951550|gb|AAT89251.1| DNA ligase [Leifsonia xyli subsp. xyli str. CTCB07]
Length = 747
Score = 37.0 bits (84), Expect = 0.89, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 32/62 (51%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+A E + L L + YY LD L +D YDR+ RL+ L+ PEL +D P T
Sbjct: 3 ADARAEAQGLTTRILELRDAYYELDTVLVSDEEYDRMLRRLEELERLHPELQSQDSPTQT 62
Query: 117 VG 118
VG
Sbjct: 63 VG 64
>gi|88703478|ref|ZP_01101194.1| DNA ligase [Congregibacter litoralis KT71]
gi|88702192|gb|EAQ99295.1| DNA ligase [Congregibacter litoralis KT71]
Length = 674
Score = 37.0 bits (84), Expect = 0.90, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 74 QKW---YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++W YY LD+P D YD L L+E PEL D P VG
Sbjct: 18 ERWNHEYYILDSPTVPDQEYDGALRELQTLEEAHPELRDASSPTQRVG 65
>gi|317127163|ref|YP_004093445.1| DNA ligase, NAD-dependent [Bacillus cellulosilyticus DSM 2522]
gi|315472111|gb|ADU28714.1| DNA ligase, NAD-dependent [Bacillus cellulosilyticus DSM 2522]
Length = 670
Score = 37.0 bits (84), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++K + E++ L I + YY LD P +D YD++ L L+E +PE +D P
Sbjct: 1 MAKDDIKQEIDRLTNILNDYAYHYYVLDQPKVSDAEYDQLLHELTKLEEAYPEWKRDDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SERVG 65
>gi|171322051|ref|ZP_02910925.1| DNA ligase, NAD-dependent [Burkholderia ambifaria MEX-5]
gi|171092642|gb|EDT37943.1| DNA ligase, NAD-dependent [Burkholderia ambifaria MEX-5]
Length = 691
Score = 37.0 bits (84), Expect = 0.91, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 20/42 (47%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ L L+ PEL D P VG
Sbjct: 31 YYVLDQPDLPDAEYDRLFGELQQLETDHPELVTPDSPTQRVG 72
>gi|134296034|ref|YP_001119769.1| DNA ligase [Burkholderia vietnamiensis G4]
gi|166215568|sp|A4JF81|DNLJ_BURVG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|134139191|gb|ABO54934.1| DNA ligase, NAD-dependent [Burkholderia vietnamiensis G4]
Length = 691
Score = 37.0 bits (84), Expect = 0.91, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 20/42 (47%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ L L+ PEL D P VG
Sbjct: 31 YYVLDQPDLPDAEYDRLFGELQQLEADHPELVTPDSPTQRVG 72
>gi|172058707|ref|YP_001815167.1| ABC transporter related [Exiguobacterium sibiricum 255-15]
gi|171991228|gb|ACB62150.1| ABC transporter related [Exiguobacterium sibiricum 255-15]
Length = 288
Score = 37.0 bits (84), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 6/52 (11%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSER 96
LD+ ++VTSLSKG+A + +L+++A LD P TDGL DR+++R
Sbjct: 118 LDRGRRVTSLSKGQAQL---FLLQLAFATNAPVLLLDEP--TDGL-DRINKR 163
>gi|117618613|ref|YP_855770.1| DNA ligase, NAD-dependent [Aeromonas hydrophila subsp. hydrophila
ATCC 7966]
gi|166215386|sp|A0KHL9|DNLJ_AERHH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|117560020|gb|ABK36968.1| DNA ligase, NAD-dependent [Aeromonas hydrophila subsp. hydrophila
ATCC 7966]
Length = 668
Score = 37.0 bits (84), Expect = 0.92, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 26/53 (49%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L ++ + + YY LDNP D YDR+ L L+ + PEL P VG
Sbjct: 11 LCELLIEYGHQYYVLDNPTVPDAEYDRLMRELIVLEAEHPELKTPASPSVRVG 63
>gi|269219963|ref|ZP_06163817.1| DNA ligase, NAD-dependent [Actinomyces sp. oral taxon 848 str.
F0332]
gi|269210599|gb|EEZ76939.1| DNA ligase, NAD-dependent [Actinomyces sp. oral taxon 848 str.
F0332]
Length = 799
Score = 37.0 bits (84), Expect = 0.95, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 74 QKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
Q+ Y+ D P+ TD YDR+ L L+ + PEL + P +VG
Sbjct: 29 QRAYHSGDEPIVTDEHYDRLVRELRRLEAEHPELAVDSSPAQSVG 73
>gi|318040766|ref|ZP_07972722.1| NAD-dependent DNA ligase LigA [Synechococcus sp. CB0101]
Length = 690
Score = 37.0 bits (84), Expect = 0.95, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E+ L+ A H YY LD P D +YDR+ L L+ PEL D P VG
Sbjct: 19 ELRQLLNRAAHA---YYVLDAPEMEDPVYDRLYRELLDLETAHPELIAPDSPTQRVG 72
>gi|121594439|ref|YP_986335.1| DNA ligase [Acidovorax sp. JS42]
gi|166215384|sp|A1W7N4|DNLJ_ACISJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|120606519|gb|ABM42259.1| DNA ligase, NAD-dependent [Acidovorax sp. JS42]
Length = 731
Score = 37.0 bits (84), Expect = 0.95, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Query: 56 KGEAMIEVEYLVKIALHHQ--KW---YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
KG A++ + +K AL Q +W YY D P D YDR ++L AL+ +P+L
Sbjct: 14 KGSALVATK--IK-ALREQLNRWAHEYYVQDTPSVPDAEYDRAFQQLQALEGAYPDLVTP 70
Query: 111 DHPWNTV 117
D P V
Sbjct: 71 DSPTQRV 77
>gi|254465633|ref|ZP_05079044.1| DNA ligase, NAD-dependent [Rhodobacterales bacterium Y4I]
gi|206686541|gb|EDZ47023.1| DNA ligase, NAD-dependent [Rhodobacterales bacterium Y4I]
Length = 750
Score = 37.0 bits (84), Expect = 0.96, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 34/73 (46%)
Query: 46 DKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFP 105
+ K VT+L+ +A E L Y++ D P +D YD + +R AL E FP
Sbjct: 4 NSEKDVTALTAEDARAEFLALEDQLRAADLAYHQADAPEISDAEYDSLKQRYRALAEAFP 63
Query: 106 ELFDEDHPWNTVG 118
+L D + VG
Sbjct: 64 DLADAATHLDAVG 76
>gi|254252054|ref|ZP_04945372.1| NAD-dependent DNA ligase [Burkholderia dolosa AUO158]
gi|124894663|gb|EAY68543.1| NAD-dependent DNA ligase [Burkholderia dolosa AUO158]
Length = 691
Score = 37.0 bits (84), Expect = 0.96, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 20/42 (47%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ L L+ PEL D P VG
Sbjct: 31 YYVLDQPDLPDAEYDRLFLELQQLEADHPELVTPDSPTQRVG 72
>gi|160902460|ref|YP_001568041.1| DNA ligase, NAD-dependent [Petrotoga mobilis SJ95]
gi|190359269|sp|A9BJX5|DNLJ_PETMO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|160360104|gb|ABX31718.1| DNA ligase, NAD-dependent [Petrotoga mobilis SJ95]
Length = 668
Score = 37.0 bits (84), Expect = 0.99, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY L +P+ +D YD++ + L L++++PEL D P +G
Sbjct: 21 HNYRYYVLADPIISDQEYDKLFKELVELEKKYPELKTPDSPTQRIG 66
>gi|222152820|ref|YP_002561997.1| NAD-dependent DNA ligase LigA [Streptococcus uberis 0140J]
gi|254781430|sp|B9DRS2|DNLJ_STRU0 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|222113633|emb|CAR41520.1| DNA ligase [Streptococcus uberis 0140J]
Length = 652
Score = 37.0 bits (84), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ YY DNP +D YD++ L L++++PE +D P VG
Sbjct: 14 QYRQEYYTNDNPSVSDQEYDKLYHELIDLEKEYPEYIQKDSPSQAVG 60
>gi|114563631|ref|YP_751144.1| DNA ligase, NAD-dependent [Shewanella frigidimarina NCIMB 400]
gi|122299383|sp|Q080K9|DNLJ_SHEFN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|114334924|gb|ABI72306.1| DNA ligase, NAD-dependent [Shewanella frigidimarina NCIMB 400]
Length = 670
Score = 37.0 bits (84), Expect = 0.99, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E++ L H YY D P D YDR+ +RL L+ +P+ D P VG
Sbjct: 7 EMDQLTHTINQHNIRYYVDDAPSIPDAEYDRLIKRLTELEGDYPQFKSVDSPTQRVG 63
>gi|308233598|ref|ZP_07664335.1| DNA ligase, NAD-dependent [Atopobium vaginae DSM 15829]
gi|328944216|ref|ZP_08241680.1| DNA ligase [Atopobium vaginae DSM 15829]
gi|327491135|gb|EGF22910.1| DNA ligase [Atopobium vaginae DSM 15829]
Length = 792
Score = 37.0 bits (84), Expect = 1.0, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
V L K+ +H YY LD PL TD +D + L L++ +P L DE + +G
Sbjct: 87 VRELRKLLEYHAYRYYALDAPLITDNQFDSYLQELLHLEKTYPYLDDEHSYTHRIG 142
>gi|261854791|ref|YP_003262074.1| DNA ligase, NAD-dependent [Halothiobacillus neapolitanus c2]
gi|261835260|gb|ACX95027.1| DNA ligase, NAD-dependent [Halothiobacillus neapolitanus c2]
Length = 685
Score = 37.0 bits (84), Expect = 1.0, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY LD+P +D +DR+ L ++ PE D P VG
Sbjct: 31 HNFRYYVLDDPEISDAAFDRLMRELQQIESAHPEWITPDSPTQRVG 76
>gi|221198328|ref|ZP_03571374.1| DNA ligase, NAD-dependent [Burkholderia multivorans CGD2M]
gi|221208267|ref|ZP_03581271.1| DNA ligase, NAD-dependent [Burkholderia multivorans CGD2]
gi|221171915|gb|EEE04358.1| DNA ligase, NAD-dependent [Burkholderia multivorans CGD2]
gi|221182260|gb|EEE14661.1| DNA ligase, NAD-dependent [Burkholderia multivorans CGD2M]
Length = 691
Score = 37.0 bits (84), Expect = 1.0, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 20/42 (47%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ L L+ P+L D P VG
Sbjct: 31 YYVLDQPDLPDAEYDRLFRELQQLESDHPDLVTPDSPTQRVG 72
>gi|227523032|ref|ZP_03953081.1| NAD-dependent DNA ligase [Lactobacillus hilgardii ATCC 8290]
gi|227089850|gb|EEI25162.1| NAD-dependent DNA ligase [Lactobacillus hilgardii ATCC 8290]
Length = 675
Score = 37.0 bits (84), Expect = 1.0, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 75 KW---YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
KW YY D+P D +YD+ ++L L+ FP++ D P VG
Sbjct: 24 KWADEYYTYDSPSVEDSVYDQTYQQLVDLETTFPQIVTPDSPTQKVG 70
>gi|157964864|ref|YP_001499688.1| NAD-dependent DNA ligase LigA [Rickettsia massiliae MTU5]
gi|166216234|sp|A8F2K5|DNLJ_RICM5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|157844640|gb|ABV85141.1| DNA ligase, NAD-dependent [Rickettsia massiliae MTU5]
Length = 689
Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 54 LSKGEAMIEVEYLV-KIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDH 112
+S+ EA +E L KIA ++ +Y DNPL +D YD++ L+++FP L E+
Sbjct: 7 ISEKEAQKLLEELADKIAAYNHAYYIE-DNPLVSDSEYDQLFNTNLKLEQKFPHLILENS 65
Query: 113 PWNTVG 118
P VG
Sbjct: 66 PSKKVG 71
>gi|308271402|emb|CBX28010.1| DNA ligase [uncultured Desulfobacterium sp.]
Length = 674
Score = 36.6 bits (83), Expect = 1.0, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 29/57 (50%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+VE L H YY +D+P +D YD++ + L L+ ++P L D P VG
Sbjct: 12 KVENLKSELQKHNYHYYVMDDPQISDTQYDKMMQELIELEAKYPMLSTPDSPSMKVG 68
>gi|221215451|ref|ZP_03588415.1| DNA ligase, NAD-dependent [Burkholderia multivorans CGD1]
gi|221164635|gb|EED97117.1| DNA ligase, NAD-dependent [Burkholderia multivorans CGD1]
Length = 691
Score = 36.6 bits (83), Expect = 1.0, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 20/42 (47%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ L L+ P+L D P VG
Sbjct: 31 YYVLDQPDLPDAEYDRLFRELQQLESDHPDLVTPDSPTQRVG 72
>gi|161524425|ref|YP_001579437.1| DNA ligase, NAD-dependent [Burkholderia multivorans ATCC 17616]
gi|189350820|ref|YP_001946448.1| NAD-dependent DNA ligase [Burkholderia multivorans ATCC 17616]
gi|254781276|sp|A9AIK9|DNLJ_BURM1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|160341854|gb|ABX14940.1| DNA ligase, NAD-dependent [Burkholderia multivorans ATCC 17616]
gi|189334842|dbj|BAG43912.1| NAD-dependent DNA ligase [Burkholderia multivorans ATCC 17616]
Length = 691
Score = 36.6 bits (83), Expect = 1.0, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 20/42 (47%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ L L+ P+L D P VG
Sbjct: 31 YYVLDQPDLPDAEYDRLFRELQQLESDHPDLVTPDSPTQRVG 72
>gi|315638276|ref|ZP_07893457.1| NAD-dependent DNA ligase LigA [Campylobacter upsaliensis JV21]
gi|315481623|gb|EFU72246.1| NAD-dependent DNA ligase LigA [Campylobacter upsaliensis JV21]
Length = 644
Score = 36.6 bits (83), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 64 EYLVKIALHH--QKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
EYL K+ L + + YY D PL +D YDR+ + A +++ P L D P +
Sbjct: 3 EYLKKVELANLWMRAYYEEDEPLASDEEYDRLIREIKAFEKENPSLISPDSPTQKIA 59
>gi|320173862|gb|EFW49042.1| DNA ligase [Shigella dysenteriae CDC 74-1112]
Length = 671
Score = 36.6 bits (83), Expect = 1.0, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L L+ + EL D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDAEYDRLMRELRELETKHLELITPDSPTQRVG 63
>gi|163788595|ref|ZP_02183040.1| putative DNA ligase [Flavobacteriales bacterium ALC-1]
gi|159875832|gb|EDP69891.1| putative DNA ligase [Flavobacteriales bacterium ALC-1]
Length = 664
Score = 36.6 bits (83), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 28/56 (50%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+E L + H YY LDN +D +D + L AL+E PE FD + P VG
Sbjct: 7 IEILREELRQHNYNYYILDNATISDYEFDIKLKELQALEEANPEFFDPNSPTQRVG 62
>gi|260436246|ref|ZP_05790216.1| DNA ligase, NAD-dependent [Synechococcus sp. WH 8109]
gi|260414120|gb|EEX07416.1| DNA ligase, NAD-dependent [Synechococcus sp. WH 8109]
Length = 680
Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E E+ +L+ A H YY LD P+ D +YDR+ L L++ P L D P V
Sbjct: 6 ERAAELRHLLNRAGHA---YYVLDAPVMEDAVYDRLYRELLELEQNDPGLQRPDSPTQRV 62
Query: 118 G 118
G
Sbjct: 63 G 63
>gi|227512904|ref|ZP_03942953.1| NAD-dependent DNA ligase [Lactobacillus buchneri ATCC 11577]
gi|227083904|gb|EEI19216.1| NAD-dependent DNA ligase [Lactobacillus buchneri ATCC 11577]
Length = 675
Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 75 KW---YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
KW YY D+P D +YD+ ++L L+ FP++ D P VG
Sbjct: 24 KWADEYYTYDSPSVEDSVYDQTYQQLVDLETTFPQIVTPDSPTQKVG 70
>gi|24379931|ref|NP_721886.1| NAD-dependent DNA ligase LigA [Streptococcus mutans UA159]
gi|81451132|sp|Q8DT49|DNLJ_STRMU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|24377912|gb|AAN59192.1|AE014986_3 DNA ligase [Streptococcus mutans UA159]
Length = 652
Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV++ + + YY DNP +D YD++ L L+++FPE + P + VG
Sbjct: 8 LVQLLNQYAREYYTKDNPSVSDAEYDKLYRELVELEKEFPEDILPNSPTHRVG 60
>gi|325127826|gb|EGC50734.1| DNA ligase, NAD-dependent [Neisseria meningitidis N1568]
Length = 841
Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 35/83 (42%)
Query: 36 PNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSE 95
PN + + K S K A + +L + + YY LD P D YD++
Sbjct: 3 PNSKHNTDLTNLLKPSDSDIKQFAAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFR 62
Query: 96 RLDALQEQFPELFDEDHPWNTVG 118
L+AL+ PEL D P VG
Sbjct: 63 ELEALELNHPELKLPDSPTQRVG 85
>gi|285018504|ref|YP_003376215.1| NAD-dependent_DNA_ligase [Xanthomonas albilineans GPE PC73]
gi|283473722|emb|CBA16225.1| putative nad-dependent_dna_ligase protein [Xanthomonas albilineans]
Length = 838
Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
+ + + ++E+ ++ A H YY L +P D YD + L+AL+ P L E
Sbjct: 2 IAKFTPQQRVVELRSQLEDANHR---YYVLADPAIPDAEYDALMRELEALESAHPALARE 58
Query: 111 DHPWNTVG 118
D P +VG
Sbjct: 59 DSPTRSVG 66
>gi|300781381|ref|ZP_07091235.1| NAD-dependent DNA ligase LigA [Corynebacterium genitalium ATCC
33030]
gi|300533088|gb|EFK54149.1| NAD-dependent DNA ligase LigA [Corynebacterium genitalium ATCC
33030]
Length = 674
Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L K H+ YY D P+ TD +D + RL L+E PEL D P VG
Sbjct: 17 LAKEVRRHRDLYYNGD-PVITDAEFDEMFRRLQQLEEDHPELAVPDSPTKEVG 68
>gi|156407081|ref|XP_001641373.1| predicted protein [Nematostella vectensis]
gi|156228511|gb|EDO49310.1| predicted protein [Nematostella vectensis]
Length = 358
Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
Query: 17 HNITPAQWKKLLTLEAKFLPNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKW 76
HN P +W L +A+ K A E L+ A + KGE + + + I Q W
Sbjct: 228 HNAAPLRWSAALAKDAQAWAGKLAREGRLEHASREDRYYKGENICRMSHHFDIGDALQIW 287
Query: 77 Y-----YRLDNPLF--TDGLYDRV 93
Y Y+ DNP F T G + ++
Sbjct: 288 YNESESYQYDNPGFALTTGHFTQI 311
>gi|311104688|ref|YP_003977541.1| DNA ligase, NAD-dependent [Achromobacter xylosoxidans A8]
gi|310759377|gb|ADP14826.1| DNA ligase, NAD-dependent [Achromobacter xylosoxidans A8]
Length = 702
Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 22/47 (46%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY D P +D YD + L AL+ + PEL + P VG
Sbjct: 23 QHNVRYYVYDEPSISDAEYDGLMRELQALEAEHPELVTPESPTQRVG 69
>gi|330837729|ref|YP_004412370.1| DNA ligase [Spirochaeta coccoides DSM 17374]
gi|329749632|gb|AEC02988.1| DNA ligase [Spirochaeta coccoides DSM 17374]
Length = 716
Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L +I L Q YY L P +D YD + + L AL+ P++ + D P VG
Sbjct: 14 LSRILLDAQHEYYVLGRPSMSDKEYDTLMDELAALEAAHPDVKEADSPTQRVG 66
>gi|89896634|ref|YP_520121.1| hypothetical protein DSY3888 [Desulfitobacterium hafniense Y51]
gi|122997178|sp|Q24QL5|DNLJ_DESHY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|89336082|dbj|BAE85677.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 659
Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P +D YD + + L L+++ PE D P VG
Sbjct: 22 YYGLDQPTLSDAEYDALLQELIRLEKEHPEFLTPDSPSQRVG 63
>gi|219667570|ref|YP_002458005.1| DNA ligase, NAD-dependent [Desulfitobacterium hafniense DCB-2]
gi|254781313|sp|B8FP44|DNLJ_DESHD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|219537830|gb|ACL19569.1| DNA ligase, NAD-dependent [Desulfitobacterium hafniense DCB-2]
Length = 659
Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P +D YD + + L L+++ PE D P VG
Sbjct: 22 YYGLDQPTLSDAEYDALLQELIRLEKEHPEFLTPDSPSQRVG 63
>gi|325915467|ref|ZP_08177781.1| DNA ligase, NAD-dependent [Xanthomonas vesicatoria ATCC 35937]
gi|325538349|gb|EGD10031.1| DNA ligase, NAD-dependent [Xanthomonas vesicatoria ATCC 35937]
Length = 833
Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
Y+ LD P D YDR+ L+AL+ + P L D P VG+
Sbjct: 25 YHVLDEPQMADVDYDRLMRELEALEAEHPALATADSPTQRVGH 67
>gi|325143946|gb|EGC66256.1| DNA ligase, NAD-dependent [Neisseria meningitidis M01-240013]
gi|325206489|gb|ADZ01942.1| DNA ligase, NAD-dependent [Neisseria meningitidis M04-240196]
Length = 841
Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 36/83 (43%)
Query: 36 PNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSE 95
PN + ++ + K S K A + +L + + YY LD P D YD++
Sbjct: 3 PNSKHNTNFTNLLKPSDSDIKQFAAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFR 62
Query: 96 RLDALQEQFPELFDEDHPWNTVG 118
L+AL+ PE D P VG
Sbjct: 63 ELEALELNHPEFKLPDSPTQRVG 85
>gi|33602779|ref|NP_890339.1| DNA ligase [Bordetella bronchiseptica RB50]
gi|81429836|sp|Q7WCJ7|DNLJ_BORBR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|33577221|emb|CAE35778.1| DNA ligase [Bordetella bronchiseptica RB50]
Length = 696
Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 22/47 (46%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY D+P D YD + L AL+ + PEL D P VG
Sbjct: 21 QHNIRYYVHDDPSVPDAEYDALMRDLQALEAEHPELVTPDSPTQRVG 67
>gi|33597876|ref|NP_885519.1| DNA ligase [Bordetella parapertussis 12822]
gi|81425567|sp|Q7W0T4|DNLJ_BORPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|33574305|emb|CAE38638.1| DNA ligase [Bordetella parapertussis]
Length = 696
Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 22/47 (46%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY D+P D YD + L AL+ + PEL D P VG
Sbjct: 21 QHNIRYYVHDDPSVPDAEYDALMRDLQALEAEHPELVTPDSPTQRVG 67
>gi|33594429|ref|NP_882073.1| DNA ligase [Bordetella pertussis Tohama I]
gi|81424006|sp|Q7VRX7|DNLJ_BORPE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|33564504|emb|CAE43819.1| DNA ligase [Bordetella pertussis Tohama I]
gi|332383840|gb|AEE68687.1| DNA ligase [Bordetella pertussis CS]
Length = 696
Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 22/47 (46%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY D+P D YD + L AL+ + PEL D P VG
Sbjct: 21 QHNIRYYVHDDPSVPDAEYDALMRDLQALEAEHPELVTPDSPTQRVG 67
>gi|323499974|ref|ZP_08104932.1| NAD-dependent DNA ligase LigA [Vibrio sinaloensis DSM 21326]
gi|323314991|gb|EGA68044.1| NAD-dependent DNA ligase LigA [Vibrio sinaloensis DSM 21326]
Length = 669
Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+H YY D+P D YDR+ L L+ Q P+L D P VG
Sbjct: 18 YHGVKYYVEDSPEIPDAEYDRLMRELMELESQHPDLMSLDSPSQRVG 64
>gi|122971128|sp|Q14L37|DNLJ_SPICI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|110005471|emb|CAK99793.1| dna ligase protein [Spiroplasma citri]
Length = 667
Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 74 QKW---YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+KW YY DNP +D YDR + L A+++Q+ EL D P V
Sbjct: 18 EKWNYEYYVNDNPSVSDQEYDRALQELIAIEQQYSELITIDSPTQRV 64
>gi|319943831|ref|ZP_08018112.1| DNA ligase [Lautropia mirabilis ATCC 51599]
gi|319743064|gb|EFV95470.1| DNA ligase [Lautropia mirabilis ATCC 51599]
Length = 779
Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 23/48 (47%)
Query: 71 LHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L H + YY D P D +YD + L L+ ++P L D P VG
Sbjct: 35 LAHNRAYYEEDAPTVEDSVYDGLFLELQQLEARWPALLTPDSPTQRVG 82
>gi|317125504|ref|YP_004099616.1| DNA ligase, NAD-dependent [Intrasporangium calvum DSM 43043]
gi|315589592|gb|ADU48889.1| DNA ligase, NAD-dependent [Intrasporangium calvum DSM 43043]
Length = 715
Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
Y+ D P +D YD + RL+AL+ Q+P L D P VG
Sbjct: 36 YHVKDAPTISDAEYDGLIRRLNALEAQWPSLRTPDSPTQKVG 77
>gi|210134818|ref|YP_002301257.1| NAD-dependent DNA ligase LigA [Helicobacter pylori P12]
gi|254781345|sp|B6JLJ9|DNLJ_HELP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|210132786|gb|ACJ07777.1| DNA ligase [Helicobacter pylori P12]
Length = 656
Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S+ E + +EYL ++ HH YY LD + +D +YD + + L A +E+ P + P
Sbjct: 4 SQKEYLERIEYLNTLS-HH---YYNLDESIVSDAVYDELYQELKAYEEKNPNDIQANSPT 59
Query: 115 NTVG 118
VG
Sbjct: 60 QKVG 63
>gi|56962859|ref|YP_174586.1| NAD-dependent DNA ligase LigA [Bacillus clausii KSM-K16]
gi|81366743|sp|Q5WJ30|DNLJ_BACSK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|56909098|dbj|BAD63625.1| DNA ligase [Bacillus clausii KSM-K16]
Length = 671
Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ L L+ +P+L ED P +G
Sbjct: 24 YYVLDTPKVPDSEYDRLMNELLQLEADYPDLVTEDSPSVRIG 65
>gi|325133819|gb|EGC56475.1| DNA ligase, NAD-dependent [Neisseria meningitidis M13399]
Length = 841
Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 36/83 (43%)
Query: 36 PNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSE 95
PN + ++ + K S K A + +L + + YY LD P D YD++
Sbjct: 3 PNSKHNTNFTNLLKPSDSDIKQFAAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFR 62
Query: 96 RLDALQEQFPELFDEDHPWNTVG 118
L+AL+ PE D P VG
Sbjct: 63 ELEALELNHPEFKLPDSPTQRVG 85
>gi|323359739|ref|YP_004226135.1| NAD-dependent DNA ligase [Microbacterium testaceum StLB037]
gi|323276110|dbj|BAJ76255.1| NAD-dependent DNA ligase [Microbacterium testaceum StLB037]
Length = 810
Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 34/69 (49%)
Query: 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
++ LS +A E L + ++ YY D L D YD RL+AL+ + PEL
Sbjct: 6 QLPDLSLDDARAEAIDLTQRITDAREAYYGRDAELVDDATYDGWMHRLEALERRHPELQG 65
Query: 110 EDHPWNTVG 118
+D P +VG
Sbjct: 66 QDSPTLSVG 74
>gi|226310273|ref|YP_002770167.1| NAD-dependent DNA ligase [Brevibacillus brevis NBRC 100599]
gi|254781268|sp|C0Z4D6|DNLJ_BREBN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|226093221|dbj|BAH41663.1| NAD-dependent DNA ligase [Brevibacillus brevis NBRC 100599]
Length = 671
Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 29/60 (48%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
A +++ L K H + Y+ D P +D YD++ L L+ FP+L D P VG
Sbjct: 6 AETKIKELAKRIERHNRLYHEEDRPEISDQEYDQLMRELRELETSFPDLQSPDSPSLRVG 65
>gi|295836378|ref|ZP_06823311.1| DNA ligase, NAD-dependent [Streptomyces sp. SPB74]
gi|295825992|gb|EDY45591.2| DNA ligase, NAD-dependent [Streptomyces sp. SPB74]
Length = 818
Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H+ YY D P+ +D +D + RL AL+E+ P+L D P V
Sbjct: 66 HRYRYYVNDQPVVSDADFDALLRRLTALEEEHPQLRTPDSPTQKVA 111
>gi|52079149|ref|YP_077940.1| NAD-dependent DNA ligase LigA [Bacillus licheniformis ATCC 14580]
gi|52784516|ref|YP_090345.1| NAD-dependent DNA ligase LigA [Bacillus licheniformis ATCC 14580]
gi|319647076|ref|ZP_08001302.1| DNA ligase [Bacillus sp. BT1B_CT2]
gi|81386291|sp|Q65MR2|DNLJ_BACLD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|52002360|gb|AAU22302.1| DNA ligase [Bacillus licheniformis ATCC 14580]
gi|52347018|gb|AAU39652.1| LigA [Bacillus licheniformis ATCC 14580]
gi|317390900|gb|EFV71701.1| DNA ligase [Bacillus sp. BT1B_CT2]
Length = 667
Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
Y+ LD+P D YD++ + L AL+E+ P+L D P VG
Sbjct: 24 YHTLDDPSVPDSEYDKLMKELIALEEEHPDLKTPDSPSQRVG 65
>gi|331703733|ref|YP_004400420.1| DNA ligase [Mycoplasma mycoides subsp. capri LC str. 95010]
gi|328802288|emb|CBW54442.1| DNA ligase [Mycoplasma mycoides subsp. capri LC str. 95010]
Length = 668
Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 32/65 (49%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK +A++ + L + K YY DNP D YD + L +L+ +PEL D P
Sbjct: 1 MSKDKALLRINQLKEQLNLWSKQYYVDDNPSVDDIEYDLALKELISLETLYPELITSDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SQKVG 65
>gi|307132386|ref|YP_003884402.1| DNA ligase, NAD(+)-dependent [Dickeya dadantii 3937]
gi|306529915|gb|ADM99845.1| DNA ligase, NAD(+)-dependent [Dickeya dadantii 3937]
Length = 683
Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 28/58 (48%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++E L +H+ Y+ D P D YD++ L L++ PEL D P VG
Sbjct: 17 VQIEALRAQLRYHEYKYHVEDAPEIPDAEYDKLMNALKTLEQAHPELVTPDSPTQRVG 74
>gi|255535523|ref|YP_003095894.1| DNA ligase [Flavobacteriaceae bacterium 3519-10]
gi|255341719|gb|ACU07832.1| DNA ligase [Flavobacteriaceae bacterium 3519-10]
Length = 667
Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L K H YY LD P +D +D + L L+ QFPE +D + P VG
Sbjct: 8 KIDALRKEIHQHNYSYYSLDEPTISDFEFDLKLKELQDLELQFPEFYDNNSPTLRVG 64
>gi|238917130|ref|YP_002930647.1| DNA ligase (NAD+) [Eubacterium eligens ATCC 27750]
gi|238872490|gb|ACR72200.1| DNA ligase (NAD+) [Eubacterium eligens ATCC 27750]
Length = 669
Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 27/57 (47%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E L K +H YY D P +D YD++ RL ++++ PE D P +G
Sbjct: 6 EYSELKKTIDYHMDRYYNQDEPEISDYEYDKLMIRLKEIEKEHPEWVTSDSPSQKIG 62
>gi|256383839|gb|ACU78409.1| DNA ligase, NAD-dependent [Mycoplasma mycoides subsp. capri str.
GM12]
gi|256384670|gb|ACU79239.1| DNA ligase, NAD-dependent [Mycoplasma mycoides subsp. capri str.
GM12]
gi|296455996|gb|ADH22231.1| DNA ligase, NAD-dependent [synthetic Mycoplasma mycoides
JCVI-syn1.0]
Length = 668
Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 32/65 (49%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK +A++ + L + K YY DNP D YD + L +L+ +PEL D P
Sbjct: 1 MSKDKALLRINQLKEQLNLWSKQYYVDDNPSVDDIEYDLALKELISLETLYPELITSDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SQKVG 65
>gi|149928191|ref|ZP_01916436.1| DNA ligase (NAD+) [Limnobacter sp. MED105]
gi|149823082|gb|EDM82322.1| DNA ligase (NAD+) [Limnobacter sp. MED105]
Length = 597
Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 47 KAKKVTSLSKGEA-MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFP 105
K S S+GE+ + + L+ + + YY LD P D YD+V L ++ P
Sbjct: 10 KGSGDNSDSRGESPTVAMRRLIDLLNRWEYAYYVLDAPEVPDSEYDKVYRSLQQIENNHP 69
Query: 106 ELFDEDHPWNTVG 118
EL D P VG
Sbjct: 70 ELIQNDSPTQRVG 82
>gi|194289797|ref|YP_002005704.1| DNA ligase [Cupriavidus taiwanensis LMG 19424]
gi|254781303|sp|B3R2C2|DNLJ_CUPTR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|193223632|emb|CAQ69639.1| DNA ligase [Cupriavidus taiwanensis LMG 19424]
Length = 709
Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 22/46 (47%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY LD P D YD + L AL+ + PEL D P VG
Sbjct: 38 HNYQYYVLDAPTVPDAEYDALFSELMALELEHPELQTPDSPTQRVG 83
>gi|229542656|ref|ZP_04431716.1| DNA ligase, NAD-dependent [Bacillus coagulans 36D1]
gi|229327076|gb|EEN92751.1| DNA ligase, NAD-dependent [Bacillus coagulans 36D1]
Length = 668
Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 20/42 (47%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ L ++ PEL D P VG
Sbjct: 24 YYVLDRPSVPDAEYDRLLRELQEIENAHPELITPDSPTQRVG 65
>gi|282861257|ref|ZP_06270322.1| DNA ligase, NAD-dependent [Streptomyces sp. ACTE]
gi|282563915|gb|EFB69452.1| DNA ligase, NAD-dependent [Streptomyces sp. ACTE]
Length = 732
Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
+A+++T +S EA L + H+ YY D P+ +D +DR+ L+A++++ P+
Sbjct: 6 QARELTGVS-AEARERHALLSEQIEEHRFRYYVKDQPVVSDAEFDRLMRELEAVEDENPQ 64
Query: 107 LFDEDHPWNTVG 118
L D P V
Sbjct: 65 LRTPDSPTQKVA 76
>gi|332284990|ref|YP_004416901.1| DNA ligase [Pusillimonas sp. T7-7]
gi|330428943|gb|AEC20277.1| DNA ligase [Pusillimonas sp. T7-7]
Length = 698
Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY D P+ +D YD++ L L++ PEL + P VG
Sbjct: 25 HNHRYYVQDAPVVSDAAYDKLMTELIELEQTHPELITPESPTQRVG 70
>gi|330817444|ref|YP_004361149.1| DNA ligase [Burkholderia gladioli BSR3]
gi|327369837|gb|AEA61193.1| DNA ligase [Burkholderia gladioli BSR3]
Length = 691
Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ L ++ + P+L D P VG
Sbjct: 31 YYVLDQPDLPDAEYDRLFRELQQIEAEHPDLITPDSPTQRVG 72
>gi|327541957|gb|EGF28460.1| NAD-dependent DNA ligase LigA [Rhodopirellula baltica WH47]
Length = 754
Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 27/56 (48%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
V+ LV H + YY P TD YD++ L L+ ++PEL D P VG
Sbjct: 64 VQQLVDEINRHNRLYYDDAAPEITDLQYDQLLAELTQLENEYPELRQPDSPTQLVG 119
>gi|86138407|ref|ZP_01056981.1| DNA ligase, NAD-dependent [Roseobacter sp. MED193]
gi|85824932|gb|EAQ45133.1| DNA ligase, NAD-dependent [Roseobacter sp. MED193]
Length = 752
Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 52 TSLSKGEAMIE-VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
+ LS+ +A E +E ++A Q Y++ D P +D YD R L E FPEL D
Sbjct: 10 SGLSQEQAQAEFLELQTQLAAADQA-YHQNDAPFLSDAAYDAAKRRYKVLAEAFPELKDI 68
Query: 111 DHPWNTVG 118
++VG
Sbjct: 69 ATQLDSVG 76
>gi|121998657|ref|YP_001003444.1| DNA ligase, NAD-dependent [Halorhodospira halophila SL1]
gi|166215780|sp|A1WY80|DNLJ_HALHL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|121590062|gb|ABM62642.1| DNA ligase, NAD-dependent [Halorhodospira halophila SL1]
Length = 711
Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 21/46 (45%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY LD P +D YD + L L+ +P+L D P V
Sbjct: 25 HDYHYYVLDRPTISDAEYDALFRELQRLEAAYPDLVSSDSPTQRVA 70
>gi|283458551|ref|YP_003363181.1| NAD-dependent DNA ligase [Rothia mucilaginosa DY-18]
gi|283134596|dbj|BAI65361.1| NAD-dependent DNA ligase [Rothia mucilaginosa DY-18]
Length = 747
Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 74 QKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ YY D P +D YD + RL+ ++ + P L D P VG
Sbjct: 50 RRAYYNEDAPFLSDAEYDALYRRLEIIEAEHPHLIANDSPTQEVG 94
>gi|157828943|ref|YP_001495185.1| NAD-dependent DNA ligase LigA [Rickettsia rickettsii str. 'Sheila
Smith']
gi|165933668|ref|YP_001650457.1| NAD-dependent DNA ligase LigA [Rickettsia rickettsii str. Iowa]
gi|166216235|sp|A8GTF2|DNLJ_RICRS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|190359278|sp|B0BUZ1|DNLJ_RICRO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|157801424|gb|ABV76677.1| NAD-dependent DNA ligase LigA [Rickettsia rickettsii str. 'Sheila
Smith']
gi|165908755|gb|ABY73051.1| NAD-dependent DNA ligase [Rickettsia rickettsii str. Iowa]
Length = 689
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 54 LSKGEAMIEVEYLV-KIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDH 112
+S+ EA +E L KIA ++ +Y DNPL +D YD++ L+++FP L E+
Sbjct: 7 ISEEEAQKLLEELADKIAAYNHAYYIE-DNPLVSDSEYDQLFNTNLKLEQKFPHLILENS 65
Query: 113 PWNTVG 118
P VG
Sbjct: 66 PSKKVG 71
>gi|323495433|ref|ZP_08100510.1| NAD-dependent DNA ligase LigA [Vibrio brasiliensis LMG 20546]
gi|323310356|gb|EGA63543.1| NAD-dependent DNA ligase LigA [Vibrio brasiliensis LMG 20546]
Length = 669
Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+H YY D+P D YDR+ L ++ Q PEL D P VG
Sbjct: 18 YHGVKYYVEDSPEIPDAEYDRLMRELMEIEAQHPELVSLDSPSQRVG 64
>gi|297623824|ref|YP_003705258.1| DNA ligase, NAD-dependent [Truepera radiovictrix DSM 17093]
gi|297165004|gb|ADI14715.1| DNA ligase, NAD-dependent [Truepera radiovictrix DSM 17093]
Length = 681
Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY L +P +D +DR+ L L+E PEL D P VG
Sbjct: 25 YYVLQDPELSDAEWDRLFHELKRLEETHPELRTPDSPTQRVG 66
>gi|159904348|ref|YP_001551692.1| NAD-dependent DNA ligase LigA [Prochlorococcus marinus str. MIT
9211]
gi|254781392|sp|A9BDC5|DNLJ_PROM4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|159889524|gb|ABX09738.1| NAD-dependent DNA ligase (contains BRCT domain type II)
[Prochlorococcus marinus str. MIT 9211]
Length = 697
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD PL D +YDR+ L +++ P L D P +G
Sbjct: 26 YYVLDTPLMEDTVYDRLYRELLNIEKNHPSLITADSPSQRLG 67
>gi|313836700|gb|EFS74414.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL037PA2]
gi|314929893|gb|EFS93724.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL044PA1]
gi|314972321|gb|EFT16418.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL037PA3]
gi|328907750|gb|EGG27514.1| NAD-dependent DNA ligase LigA [Propionibacterium sp. P08]
Length = 740
Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 45 LDKAKKVTSLSKGEAMIEVEY----LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDAL 100
+D + + L EA E + L + L Q YY D P +D YD++ L +
Sbjct: 2 VDDSTRGGELEASEAGAEARHRWTELAQRILDAQDAYYANDAPTMSDAAYDQLMVELKKV 61
Query: 101 QEQFPELFDEDHPWNTVG 118
++ PEL D P VG
Sbjct: 62 EDDHPELRSPDSPTQRVG 79
>gi|295702476|ref|YP_003595551.1| DNA ligase, NAD-dependent [Bacillus megaterium DSM 319]
gi|294800135|gb|ADF37201.1| DNA ligase, NAD-dependent [Bacillus megaterium DSM 319]
Length = 668
Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YD++ L +++ FPEL D P +G
Sbjct: 24 YYVLDQPSVPDAEYDKLMNELIEIEDSFPELKTADSPTQRIG 65
>gi|222481049|ref|YP_002567286.1| DNA ligase, NAD-dependent [Halorubrum lacusprofundi ATCC 49239]
gi|254781342|sp|B9LU22|DNLJ_HALLT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|222453951|gb|ACM58216.1| DNA ligase, NAD-dependent [Halorubrum lacusprofundi ATCC 49239]
Length = 710
Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V +LS+ EA + L H YY +PL D YDR+ RL L+ +F +L +
Sbjct: 27 VGALSEDEATEQASLLRAAIREHDHRYYLEADPLIPDETYDRLFTRLQELENEF-DLPTQ 85
Query: 111 DHPWNTVG 118
+ P VG
Sbjct: 86 NSPTRRVG 93
>gi|89075460|ref|ZP_01161871.1| DNA ligase [Photobacterium sp. SKA34]
gi|89048732|gb|EAR54303.1| DNA ligase [Photobacterium sp. SKA34]
Length = 670
Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+H YY DNP D YDR+ ++L ++ + PE D P VG
Sbjct: 18 YHGHRYYVEDNPEIPDAEYDRMMQQLLKIEAEHPEWVTVDSPSQRVG 64
>gi|296270799|ref|YP_003653431.1| NAD-dependent DNA ligase [Thermobispora bispora DSM 43833]
gi|296093586|gb|ADG89538.1| DNA ligase, NAD-dependent [Thermobispora bispora DSM 43833]
Length = 732
Score = 36.2 bits (82), Expect = 1.3, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD+P +D YD + L+E++P+L D P VG
Sbjct: 35 YYVLDSPTVSDAEYDAWMREIRELEERYPDLRTPDSPTQKVG 76
>gi|315083671|gb|EFT55647.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL027PA2]
Length = 740
Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 25/53 (47%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L + L Q YY D P +D YDR+ L +++ PEL D P VG
Sbjct: 27 LAQRILDAQDAYYARDAPTISDAEYDRLMVELKKVEDDHPELRTPDSPTQRVG 79
>gi|229587074|ref|YP_002845575.1| NAD-dependent DNA ligase LigA [Rickettsia africae ESF-5]
gi|254781406|sp|C3PLJ2|DNLJ_RICAE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|228022124|gb|ACP53832.1| DNA ligase, NAD-dependent [Rickettsia africae ESF-5]
Length = 689
Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 54 LSKGEAMIEVEYLV-KIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDH 112
+S+ EA +E L KIA ++ +Y DNPL +D YD++ L+++FP L E+
Sbjct: 7 ISEEEAQKLLEELADKIAAYNHAYYIE-DNPLVSDSEYDQLFNTNLKLEQKFPHLILENS 65
Query: 113 PWNTVG 118
P VG
Sbjct: 66 PSKKVG 71
>gi|15893019|ref|NP_360733.1| NAD-dependent DNA ligase LigA [Rickettsia conorii str. Malish 7]
gi|81527939|sp|Q92GM7|DNLJ_RICCN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|15620219|gb|AAL03634.1| DNA ligase [Rickettsia conorii str. Malish 7]
Length = 689
Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 54 LSKGEAMIEVEYLV-KIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDH 112
+S+ EA +E L KIA ++ +Y DNPL +D YD++ L+++FP L E+
Sbjct: 7 ISEEEAQKLLEELADKIAAYNHAYYIE-DNPLVSDSEYDQLFNTNLKLEQKFPHLILENS 65
Query: 113 PWNTVG 118
P VG
Sbjct: 66 PSKKVG 71
>gi|84686905|ref|ZP_01014789.1| DNA ligase, NAD-dependent [Maritimibacter alkaliphilus HTCC2654]
gi|84665102|gb|EAQ11582.1| DNA ligase, NAD-dependent [Rhodobacterales bacterium HTCC2654]
Length = 710
Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 30/68 (44%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V L + A E+ L + Y+ D P +D YD R ++ +FPEL +
Sbjct: 9 VEKLDEAGARAELARLADLLASANTAYHTEDAPEMSDAAYDAAKRRNAEIEARFPELKRD 68
Query: 111 DHPWNTVG 118
D P + VG
Sbjct: 69 DSPTDQVG 76
>gi|294155884|ref|YP_003560268.1| DNA ligase (NAD(+)) [Mycoplasma crocodyli MP145]
gi|291600422|gb|ADE19918.1| DNA ligase (NAD(+)) [Mycoplasma crocodyli MP145]
Length = 657
Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 64 EYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E + KI ++ + YY LD P +D YD + + L +++Q P++ ++D P +G
Sbjct: 11 ELIAKIKQYNNE-YYNLDQPSVSDAEYDALYKELLEIEKQNPKIINQDSPSQIIG 64
>gi|222110866|ref|YP_002553130.1| NAD-dependent DNA ligase [Acidovorax ebreus TPSY]
gi|254781316|sp|B9MIW4|DNLJ_DIAST RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|221730310|gb|ACM33130.1| DNA ligase, NAD-dependent [Acidovorax ebreus TPSY]
Length = 740
Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 56 KGEAMIEVEYLVKIALHHQ--KW---YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
KG A++ + +K AL Q +W YY D P D YDR + L AL+ +P+L
Sbjct: 23 KGSALVAAK--IK-ALREQLNRWAHEYYVQDTPSVPDAEYDRAFQELQALEGAYPDLVTP 79
Query: 111 DHPWNTV 117
D P V
Sbjct: 80 DSPTQRV 86
>gi|238650378|ref|YP_002916230.1| NAD-dependent DNA ligase LigA [Rickettsia peacockii str. Rustic]
gi|257096313|sp|C4K0T1|DNLJ_RICPU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|238624476|gb|ACR47182.1| NAD-dependent DNA ligase LigA [Rickettsia peacockii str. Rustic]
Length = 689
Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 54 LSKGEAMIEVEYLV-KIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDH 112
+S+ EA +E L KIA ++ +Y DNPL +D YD++ L+++FP L E+
Sbjct: 7 ISEEEAQKLLEELADKIAAYNHAYYIE-DNPLVSDSEYDQLFNTNLKLEQKFPHLILENS 65
Query: 113 PWNTVG 118
P VG
Sbjct: 66 PSKKVG 71
>gi|90962320|ref|YP_536236.1| NAD-dependent DNA ligase [Lactobacillus salivarius UCC118]
gi|123391334|sp|Q1WSH6|DNLJ_LACS1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|90821514|gb|ABE00153.1| NAD-dependent DNA ligase [Lactobacillus salivarius UCC118]
Length = 672
Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D +YD+ +RL L++ P+L D P VG
Sbjct: 24 YYVLDTPSVEDSVYDKHYQRLLELEQANPDLVTADSPSQRVG 65
>gi|34581289|ref|ZP_00142769.1| DNA ligase [Rickettsia sibirica 246]
gi|28262674|gb|EAA26178.1| DNA ligase [Rickettsia sibirica 246]
Length = 689
Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 54 LSKGEAMIEVEYLV-KIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDH 112
+S+ EA +E L KIA ++ +Y DNPL +D YD++ L+++FP L E+
Sbjct: 7 ISEEEAQKLLEELADKIAAYNHAYYIE-DNPLVSDSEYDQLFNTNLKLEQKFPHLILENS 65
Query: 113 PWNTVG 118
P VG
Sbjct: 66 PSKKVG 71
>gi|283779823|ref|YP_003370578.1| DNA ligase, NAD-dependent [Pirellula staleyi DSM 6068]
gi|283438276|gb|ADB16718.1| DNA ligase, NAD-dependent [Pirellula staleyi DSM 6068]
Length = 676
Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 28/61 (45%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E + ++ L + H YY P +D YDR+ + L ++ FPEL D P V
Sbjct: 7 EILERLQALREAIRRHDYLYYVRAQPEISDLEYDRLMQDLTTIEASFPELVTPDSPTQRV 66
Query: 118 G 118
G
Sbjct: 67 G 67
>gi|292657108|ref|YP_003537005.1| DNA ligase, NAD-dependent [Haloferax volcanii DS2]
gi|291370943|gb|ADE03170.1| DNA ligase, NAD-dependent [Haloferax volcanii DS2]
Length = 699
Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 53 SLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDH 112
SLS+ A + L + H YY +PL +D YD + RL AL++ F +L +
Sbjct: 26 SLSREAAEGQAALLREAVREHDHRYYVAADPLVSDAAYDALFSRLVALEDAF-DLDTTNS 84
Query: 113 PWNTVG 118
P N VG
Sbjct: 85 PTNRVG 90
>gi|227892258|ref|ZP_04010063.1| NAD-dependent DNA ligase [Lactobacillus salivarius ATCC 11741]
gi|227865899|gb|EEJ73320.1| NAD-dependent DNA ligase [Lactobacillus salivarius ATCC 11741]
Length = 672
Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D +YD+ +RL L++ P+L D P VG
Sbjct: 24 YYVLDTPSVEDSVYDKHYQRLLELEQANPDLVTADSPSQRVG 65
>gi|314957538|gb|EFT01641.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL002PA1]
Length = 724
Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 25/53 (47%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L + L Q YY D P +D YDR+ L +++ PEL D P VG
Sbjct: 11 LAQRILDAQDAYYARDAPTISDAEYDRLMVELKKVEDDHPELRTPDSPTQRVG 63
>gi|300214970|gb|ADJ79386.1| DNA ligase(Polydeoxyribonucleotide synthase [NAD+]) [Lactobacillus
salivarius CECT 5713]
Length = 672
Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D +YD+ +RL L++ P+L D P VG
Sbjct: 24 YYVLDTPSVEDSVYDKHYQRLLELEQANPDLVTADSPSQRVG 65
>gi|289450450|ref|YP_003474988.1| DNA ligase (NAD+) [Clostridiales genomosp. BVAB3 str. UPII9-5]
gi|289184997|gb|ADC91422.1| DNA ligase (NAD+) [Clostridiales genomosp. BVAB3 str. UPII9-5]
Length = 758
Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY D+P+ +D YD + RL+ L+ PE D P VG
Sbjct: 106 HNNLYYVEDSPIISDYSYDAMLRRLEELETAHPEYMTTDSPTVKVG 151
>gi|223936891|ref|ZP_03628800.1| DNA ligase, NAD-dependent [bacterium Ellin514]
gi|223894460|gb|EEF60912.1| DNA ligase, NAD-dependent [bacterium Ellin514]
Length = 680
Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 28/60 (46%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ EA LV+ H YY P +D YDR+ L L+++FP+L D P
Sbjct: 1 MTHNEAKTRHTQLVEEIRGHDNAYYVEAKPTISDQAYDRLYHELLDLEKKFPDLITSDSP 60
>gi|187251632|ref|YP_001876114.1| DNA ligase, NAD-dependent [Elusimicrobium minutum Pei191]
gi|254781329|sp|B2KE31|DNLJ_ELUMP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|186971792|gb|ACC98777.1| DNA ligase, NAD-dependent [Elusimicrobium minutum Pei191]
Length = 656
Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E+E L +H YY LDN +D YD + RL L+ P+ D P +G
Sbjct: 7 EIEDLRSKINYHNNLYYNLDNAEISDAEYDGLYARLKFLEAMNPDYADAASPTQKIG 63
>gi|311067136|ref|YP_003972059.1| NAD-dependent DNA ligase LigA [Bacillus atrophaeus 1942]
gi|310867653|gb|ADP31128.1| NAD-dependent DNA ligase LigA [Bacillus atrophaeus 1942]
Length = 668
Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YD++ + L L+E+ P+L D P VG
Sbjct: 24 YYTLDEPSVPDSEYDKLMQELLDLEEEHPDLRTPDSPTQRVG 65
>gi|56696562|ref|YP_166919.1| DNA ligase, NAD-dependent [Ruegeria pomeroyi DSS-3]
gi|81349987|sp|Q5LST6|DNLJ_SILPO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|56678299|gb|AAV94965.1| DNA ligase, NAD-dependent [Ruegeria pomeroyi DSS-3]
Length = 739
Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+++ EA E+ L + Y+ LD P +D YD + +R ++ +FP L D P
Sbjct: 1 MTEAEAAQELARLAGLLAQANLAYHTLDAPEISDADYDALKQRNAEIEARFPHLKRPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SEQVG 65
>gi|258544861|ref|ZP_05705095.1| DNA ligase, NAD-dependent [Cardiobacterium hominis ATCC 15826]
gi|258519884|gb|EEV88743.1| DNA ligase, NAD-dependent [Cardiobacterium hominis ATCC 15826]
Length = 668
Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 21/46 (45%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY LDNPL D YD + L AL+ E D P VG
Sbjct: 17 HDHAYYVLDNPLIADAEYDALLRELRALEAASGEPVPADSPSQRVG 62
>gi|315095035|gb|EFT67011.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL060PA1]
Length = 740
Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 25/53 (47%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L + L Q YY D P +D YDR+ L +++ PEL D P VG
Sbjct: 27 LAQRILDAQDAYYASDAPTISDAEYDRLMVELKKVEDDHPELRTPDSPTQRVG 79
>gi|119386790|ref|YP_917845.1| DNA ligase, NAD-dependent [Paracoccus denitrificans PD1222]
gi|166216224|sp|A1B9F5|DNLJ_PARDP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|119377385|gb|ABL72149.1| DNA ligase, NAD-dependent [Paracoccus denitrificans PD1222]
Length = 765
Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY+ D P +D YD RL+ ++ +FP+L P VG
Sbjct: 51 YYQEDAPFISDAEYDASKRRLEEIEARFPDLAHSGSPTAQVG 92
>gi|282854737|ref|ZP_06264072.1| DNA ligase (NAD(+)) [Propionibacterium acnes J139]
gi|282582319|gb|EFB87701.1| DNA ligase (NAD(+)) [Propionibacterium acnes J139]
gi|314982008|gb|EFT26101.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL110PA3]
gi|315090823|gb|EFT62799.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL110PA4]
Length = 740
Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 25/53 (47%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L + L Q YY D P +D YDR+ L +++ PEL D P VG
Sbjct: 27 LAQRILDAQDAYYASDAPTISDAEYDRLMVELKKVEDDHPELRTPDSPTQRVG 79
>gi|314966144|gb|EFT10243.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL082PA2]
Length = 740
Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 25/53 (47%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L + L Q YY D P +D YDR+ L +++ PEL D P VG
Sbjct: 27 LAQRILDAQDAYYASDAPTISDAEYDRLMVELKKVEDDHPELRTPDSPTQRVG 79
>gi|314923733|gb|EFS87564.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL001PA1]
gi|315104373|gb|EFT76349.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL050PA2]
gi|327328187|gb|EGE69956.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL103PA1]
Length = 740
Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 25/53 (47%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L + L Q YY D P +D YDR+ L +++ PEL D P VG
Sbjct: 27 LAQRILDAQDAYYASDAPTISDAEYDRLMVELKKVEDDHPELRTPDSPTQRVG 79
>gi|313668860|ref|YP_004049144.1| DNA ligase [Neisseria lactamica ST-640]
gi|313006322|emb|CBN87785.1| putative DNA ligase [Neisseria lactamica 020-06]
Length = 827
Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 22/42 (52%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YD++ L+AL+ PEL D P VG
Sbjct: 30 YYTLDAPSVPDAEYDKLFRELEALELNHPELKLPDSPTQRVG 71
>gi|309378943|emb|CBX22396.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 827
Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 22/42 (52%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YD++ L+AL+ PEL D P VG
Sbjct: 30 YYTLDAPSVPDAEYDKLFRELEALELNHPELKLPDSPTQRVG 71
>gi|291542878|emb|CBL15988.1| DNA ligase, NAD-dependent [Ruminococcus bromii L2-63]
Length = 661
Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L K +H YY D P +D YD + L+ ++++FP L P N VG
Sbjct: 13 LTKQLEYHNNLYYNQDEPEISDYDYDMLMRELENIEKEFPSLKSPMSPTNRVG 65
>gi|301299742|ref|ZP_07205992.1| DNA ligase (NAD(+)) [Lactobacillus salivarius ACS-116-V-Col5a]
gi|300852673|gb|EFK80307.1| DNA ligase (NAD(+)) [Lactobacillus salivarius ACS-116-V-Col5a]
Length = 672
Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D +YD+ +RL L++ P+L D P VG
Sbjct: 24 YYVLDTPSVEDSVYDKHYQRLLELEQANPDLVTADSPSQRVG 65
>gi|76787534|ref|YP_329595.1| NAD-dependent DNA ligase LigA [Streptococcus agalactiae A909]
gi|123771969|sp|Q3K1K8|DNLJ_STRA1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|76562591|gb|ABA45175.1| DNA ligase, NAD-dependent [Streptococcus agalactiae A909]
Length = 652
Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV + + K YY DNP +D YD++ L L++Q PE + P + VG
Sbjct: 8 LVSLLNQYAKEYYTQDNPTVSDSQYDQLYRELVELEKQHPENILPNSPTHRVG 60
>gi|325529285|gb|EGD06234.1| NAD-dependent DNA ligase [Burkholderia sp. TJI49]
Length = 691
Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 19/42 (45%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ L L+ PE D P VG
Sbjct: 31 YYVLDQPDLPDAEYDRLFAELQQLEADHPEFVTPDSPTQRVG 72
>gi|22537014|ref|NP_687865.1| NAD-dependent DNA ligase LigA [Streptococcus agalactiae 2603V/R]
gi|81454504|sp|Q8E084|DNLJ_STRA5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|22533870|gb|AAM99737.1|AE014230_17 DNA ligase, NAD-dependent [Streptococcus agalactiae 2603V/R]
Length = 652
Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV + + K YY DNP +D YD++ L L++Q PE + P + VG
Sbjct: 8 LVSLLNQYAKEYYTQDNPTVSDSQYDQLYRELVELEKQHPENILPNSPTHRVG 60
>gi|330445331|ref|ZP_08308983.1| DNA ligase, NAD-dependent [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328489522|dbj|GAA03480.1| DNA ligase, NAD-dependent [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 671
Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+H YY DNP D YDR+ ++L ++ + PE D P VG
Sbjct: 18 YHGHRYYVEDNPEIPDAEYDRMMQQLLKIEAEHPEWVTVDSPSQRVG 64
>gi|253701546|ref|YP_003022735.1| DNA ligase, NAD-dependent [Geobacter sp. M21]
gi|251776396|gb|ACT18977.1| DNA ligase, NAD-dependent [Geobacter sp. M21]
Length = 668
Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 28/65 (43%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K A +++L H + YY D P TD YD + L L+ P+L D P
Sbjct: 1 MDKTAAAQRIKWLSSEIERHNRLYYEQDMPEITDAEYDALFRELKELEASHPDLALPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TGRVG 65
>gi|167619582|ref|ZP_02388213.1| DNA ligase, NAD-dependent [Burkholderia thailandensis Bt4]
Length = 691
Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ L ++ + P+L D P VG
Sbjct: 31 YYVLDQPDLPDAEYDRLFAELQQIEAEHPDLVTPDSPTQRVG 72
>gi|167581473|ref|ZP_02374347.1| DNA ligase, NAD-dependent [Burkholderia thailandensis TXDOH]
Length = 691
Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ L ++ + P+L D P VG
Sbjct: 31 YYVLDQPDLPDAEYDRLFAELQQIEAEHPDLVTPDSPTQRVG 72
>gi|296116447|ref|ZP_06835061.1| putative DNA ligase [Gluconacetobacter hansenii ATCC 23769]
gi|295977040|gb|EFG83804.1| putative DNA ligase [Gluconacetobacter hansenii ATCC 23769]
Length = 709
Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+S +A E+ L + + Y++ D P+ TD +YD + R L++ P +D P
Sbjct: 24 MSASQAASELALLADVIAQLDRAYHQDDAPIVTDAVYDALRRRNSELEQAHPRERRDDSP 83
Query: 114 WNTVG 118
VG
Sbjct: 84 DTRVG 88
>gi|210621776|ref|ZP_03292805.1| hypothetical protein CLOHIR_00750 [Clostridium hiranonis DSM 13275]
gi|210154540|gb|EEA85546.1| hypothetical protein CLOHIR_00750 [Clostridium hiranonis DSM 13275]
Length = 678
Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 32/65 (49%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K + ++++ L+ +H YY D P +D YD + + L L+ + PE D P
Sbjct: 1 MGKEDIKLQIDNLIDKINYHSDKYYNQDTPEISDFEYDMLMKELIKLEAENPEFKRVDSP 60
Query: 114 WNTVG 118
N VG
Sbjct: 61 SNRVG 65
>gi|187924439|ref|YP_001896081.1| DNA ligase, NAD-dependent [Burkholderia phytofirmans PsJN]
gi|254781278|sp|B2T5K0|DNLJ_BURPP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|187715633|gb|ACD16857.1| DNA ligase, NAD-dependent [Burkholderia phytofirmans PsJN]
Length = 688
Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YD++ + L++++ + P+L D P VG
Sbjct: 32 YYVLDQPDLPDAEYDKLFKELESIETEHPDLIVPDSPTQRVG 73
>gi|260063119|ref|YP_003196199.1| DNA ligase [Robiginitalea biformata HTCC2501]
gi|88784688|gb|EAR15858.1| DNA ligase [Robiginitalea biformata HTCC2501]
Length = 673
Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY LD P+ +D +D + L L++Q PE +D P VG
Sbjct: 24 HNYRYYVLDEPVISDYDFDMKLKALQDLEKQHPEFYDPASPTQRVG 69
>gi|282851211|ref|ZP_06260576.1| DNA ligase (NAD(+)) [Lactobacillus gasseri 224-1]
gi|282557179|gb|EFB62776.1| DNA ligase (NAD(+)) [Lactobacillus gasseri 224-1]
Length = 668
Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY D P+ D +YD+ + L L++QFP+L D VG
Sbjct: 27 YYAKDAPVVEDAVYDKAYQELVELEKQFPDLVTSDSITQRVG 68
>gi|238854176|ref|ZP_04644523.1| DNA ligase, NAD-dependent [Lactobacillus gasseri 202-4]
gi|238833252|gb|EEQ25542.1| DNA ligase, NAD-dependent [Lactobacillus gasseri 202-4]
Length = 668
Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY D P+ D +YD+ + L L++QFP+L D VG
Sbjct: 27 YYAKDAPVVEDAVYDKAYQELVELEKQFPDLVTSDSITQRVG 68
>gi|170692136|ref|ZP_02883299.1| DNA ligase, NAD-dependent [Burkholderia graminis C4D1M]
gi|170142566|gb|EDT10731.1| DNA ligase, NAD-dependent [Burkholderia graminis C4D1M]
Length = 693
Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YD++ + L++++ + P+L D P VG
Sbjct: 37 YYVLDQPDLPDAEYDKLFKELESIEAEHPDLIVPDSPTQRVG 78
>gi|163802586|ref|ZP_02196478.1| NAD-dependent DNA ligase LigA [Vibrio sp. AND4]
gi|159173669|gb|EDP58488.1| NAD-dependent DNA ligase LigA [Vibrio sp. AND4]
Length = 670
Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 58 EAMIEVEYLVKIALH-HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
E++++ +K +LH H YY DNP D YDR+ L ++ + P+L D P
Sbjct: 3 ESVLQQLEELKESLHYHAVRYYVEDNPEIPDAEYDRMMRELLDIEAEHPDLVTVDSPSQR 62
Query: 117 VG 118
VG
Sbjct: 63 VG 64
>gi|116630136|ref|YP_815308.1| NAD-dependent DNA ligase [Lactobacillus gasseri ATCC 33323]
gi|122272927|sp|Q041K2|DNLJ_LACGA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|116095718|gb|ABJ60870.1| NAD-dependent DNA ligase [Lactobacillus gasseri ATCC 33323]
Length = 668
Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY D P+ D +YD+ + L L++QFP+L D VG
Sbjct: 27 YYAKDAPVVEDAVYDKAYQELVELEKQFPDLVTSDSITQRVG 68
>gi|83720010|ref|YP_442546.1| DNA ligase, NAD-dependent [Burkholderia thailandensis E264]
gi|257138755|ref|ZP_05587017.1| DNA ligase, NAD-dependent [Burkholderia thailandensis E264]
gi|123753789|sp|Q2SX03|DNLJ_BURTA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|83653835|gb|ABC37898.1| DNA ligase, NAD-dependent [Burkholderia thailandensis E264]
Length = 691
Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ L ++ + P+L D P VG
Sbjct: 31 YYVLDQPDLPDAEYDRLFAELQQIEAEHPDLVTPDSPTQRVG 72
>gi|330973309|gb|EGH73375.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. aceris str.
M302273PT]
Length = 670
Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 22/47 (46%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H Y+ LD P D YDR+ L AL+ + P L D P VG
Sbjct: 17 QHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLVTPDSPTQRVG 63
>gi|92112835|ref|YP_572763.1| DNA ligase, NAD-dependent [Chromohalobacter salexigens DSM 3043]
gi|122990589|sp|Q1QZP4|DNLJ_CHRSD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|91795925|gb|ABE58064.1| DNA ligase, NAD-dependent [Chromohalobacter salexigens DSM 3043]
Length = 691
Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY D+P TD YD + L +L+ + PEL D P VG
Sbjct: 26 YYVEDDPRITDAEYDALLRELQSLEAEHPELKTPDSPTQRVG 67
>gi|76798177|ref|ZP_00780429.1| DNA ligase, NAD-dependent [Streptococcus agalactiae 18RS21]
gi|77405561|ref|ZP_00782652.1| DNA ligase, NAD-dependent [Streptococcus agalactiae H36B]
gi|77410701|ref|ZP_00787060.1| DNA ligase, NAD-dependent [Streptococcus agalactiae CJB111]
gi|76586485|gb|EAO62991.1| DNA ligase, NAD-dependent [Streptococcus agalactiae 18RS21]
gi|77163237|gb|EAO74189.1| DNA ligase, NAD-dependent [Streptococcus agalactiae CJB111]
gi|77175868|gb|EAO78646.1| DNA ligase, NAD-dependent [Streptococcus agalactiae H36B]
Length = 648
Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV + + K YY DNP +D YD++ L L++Q PE + P + VG
Sbjct: 4 LVSLLNQYAKEYYTQDNPTVSDSQYDQLYRELVELEKQHPENILPNSPTHRVG 56
>gi|325197886|gb|ADY93342.1| DNA ligase, NAD-dependent [Neisseria meningitidis G2136]
Length = 841
Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 22/42 (52%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YD++ L+AL+ PEL D P VG
Sbjct: 44 YYTLDAPSVPDAEYDKLFRELEALELNHPELKLPDSPTQRVG 85
>gi|85713360|ref|ZP_01044373.1| NAD-dependent DNA ligase [Idiomarina baltica OS145]
gi|85692818|gb|EAQ30803.1| NAD-dependent DNA ligase [Idiomarina baltica OS145]
Length = 449
Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 22/46 (47%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ K YY LD P D YD++ L L+ PEL + P VG
Sbjct: 21 YNKEYYELDEPTIPDSEYDKLFRELQTLEANNPELKSQHSPTEKVG 66
>gi|311744048|ref|ZP_07717854.1| NAD-dependent DNA ligase LigA [Aeromicrobium marinum DSM 15272]
gi|311313178|gb|EFQ83089.1| NAD-dependent DNA ligase LigA [Aeromicrobium marinum DSM 15272]
Length = 782
Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 31/61 (50%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
EA EV L++ ++ YY D L D YD +L+A++ + PEL +D P V
Sbjct: 15 EARAEVTTLLERIAEAREAYYGQDASLVDDATYDGWLRQLEAVERRHPELQGQDSPTLNV 74
Query: 118 G 118
G
Sbjct: 75 G 75
>gi|257869253|ref|ZP_05648906.1| NAD-dependent DNA ligase [Enterococcus gallinarum EG2]
gi|257803417|gb|EEV32239.1| NAD-dependent DNA ligase [Enterococcus gallinarum EG2]
Length = 676
Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY D P D +YDR+ + L L+ +P+L ED P VG
Sbjct: 26 YYVKDQPSVEDYVYDRLYKELVQLETDYPQLVTEDSPTQRVG 67
>gi|261377933|ref|ZP_05982506.1| DNA ligase, NAD-dependent [Neisseria cinerea ATCC 14685]
gi|269145793|gb|EEZ72211.1| DNA ligase, NAD-dependent [Neisseria cinerea ATCC 14685]
Length = 831
Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 22/42 (52%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YD++ L+AL+ PEL D P VG
Sbjct: 22 YYTLDAPSVPDAEYDKLFRELEALELNHPELKLPDSPTQRVG 63
>gi|156973609|ref|YP_001444516.1| NAD-dependent DNA ligase LigA [Vibrio harveyi ATCC BAA-1116]
gi|166216277|sp|A7MT54|DNLJ_VIBHB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|156525203|gb|ABU70289.1| hypothetical protein VIBHAR_01312 [Vibrio harveyi ATCC BAA-1116]
Length = 670
Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 67 VKIALH-HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+K +LH H YY DNP D YDR+ L ++ + PEL D P VG
Sbjct: 12 LKESLHYHAVRYYVEDNPEIPDAEYDRMMRELLDIEAEHPELVTVDSPSLRVG 64
>gi|15676564|ref|NP_273708.1| DNA ligase [Neisseria meningitidis MC58]
gi|161869603|ref|YP_001598770.1| DNA ligase [Neisseria meningitidis 053442]
gi|304388085|ref|ZP_07370214.1| NAD-dependent DNA ligase LigA [Neisseria meningitidis ATCC 13091]
gi|81784869|sp|Q9K0E3|DNLJ_NEIMB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|190359266|sp|A9M2U7|DNLJ_NEIM0 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|7225892|gb|AAF41084.1| DNA ligase [Neisseria meningitidis MC58]
gi|161595156|gb|ABX72816.1| DNA ligase [Neisseria meningitidis 053442]
gi|304337942|gb|EFM04082.1| NAD-dependent DNA ligase LigA [Neisseria meningitidis ATCC 13091]
gi|316983632|gb|EFV62613.1| DNA ligase, NAD-dependent [Neisseria meningitidis H44/76]
gi|325139885|gb|EGC62416.1| DNA ligase, NAD-dependent [Neisseria meningitidis CU385]
gi|325200648|gb|ADY96103.1| DNA ligase, NAD-dependent [Neisseria meningitidis H44/76]
Length = 841
Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 22/42 (52%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YD++ L+AL+ PEL D P VG
Sbjct: 44 YYTLDAPSVPDAEYDKLFRELEALELNHPELKLPDSPTQRVG 85
>gi|310826558|ref|YP_003958915.1| DNA ligase [Eubacterium limosum KIST612]
gi|308738292|gb|ADO35952.1| DNA ligase [Eubacterium limosum KIST612]
Length = 666
Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY D P+ D YDR+ + L +L+ +P+ D P VG
Sbjct: 26 YYDKDAPVIPDYAYDRMMQELISLETAYPQFLTSDSPSQRVG 67
>gi|229917963|ref|YP_002886609.1| DNA ligase, NAD-dependent [Exiguobacterium sp. AT1b]
gi|229469392|gb|ACQ71164.1| DNA ligase, NAD-dependent [Exiguobacterium sp. AT1b]
Length = 664
Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ L ++ +PEL D P VG
Sbjct: 21 YYVLDRPSVPDSEYDRLMNELIQIETDYPELRTPDSPTQRVG 62
>gi|330960233|gb|EGH60493.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. maculicola
str. ES4326]
Length = 787
Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 22/47 (46%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H Y+ LD P D YDR+ L AL+ + P L D P VG
Sbjct: 17 QHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLVTPDSPTQRVG 63
>gi|284166901|ref|YP_003405180.1| DNA ligase, NAD-dependent [Haloterrigena turkmenica DSM 5511]
gi|284016556|gb|ADB62507.1| DNA ligase, NAD-dependent [Haloterrigena turkmenica DSM 5511]
Length = 692
Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V LS+ EA +VE L + H + YY +P+ D YD + RL L++ F L
Sbjct: 23 VGELSEDEAREQVELLREAIREHDRRYYVESDPVIADRTYDALFARLRDLEDAF-GLEHP 81
Query: 111 DHPWNTVG 118
D P +VG
Sbjct: 82 DSPTRSVG 89
>gi|295676829|ref|YP_003605353.1| DNA ligase, NAD-dependent [Burkholderia sp. CCGE1002]
gi|295436672|gb|ADG15842.1| DNA ligase, NAD-dependent [Burkholderia sp. CCGE1002]
Length = 687
Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 67 VKIALHHQKW-YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L H + YY LD P D YD++ + L+ ++ + P+L D P VG
Sbjct: 21 LRAELEHANYAYYVLDQPDLPDAEYDKLFKELERIEAEHPDLIVPDSPTQRVG 73
>gi|237799321|ref|ZP_04587782.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. oryzae str.
1_6]
gi|331022177|gb|EGI02234.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. oryzae str.
1_6]
Length = 703
Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 22/47 (46%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H Y+ LD P D YDR+ L AL+ + P L D P VG
Sbjct: 17 QHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLVTPDSPTQRVG 63
>gi|209695779|ref|YP_002263709.1| NAD-dependent DNA ligase LigA [Aliivibrio salmonicida LFI1238]
gi|254781250|sp|B6EJQ6|DNLJ_ALISL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|208009732|emb|CAQ80037.1| NAD-dependent DNA ligase [Aliivibrio salmonicida LFI1238]
Length = 669
Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+H YY D+P D YDR+ ++L ++++ PE D P VG
Sbjct: 16 YHAYRYYVEDSPELPDAEYDRMMQQLLLIEKEHPEFMTVDSPSQRVG 62
>gi|66045063|ref|YP_234904.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. syringae
B728a]
gi|75502608|sp|Q4ZVF6|DNLJ_PSEU2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|63255770|gb|AAY36866.1| NAD-dependent DNA ligase [Pseudomonas syringae pv. syringae B728a]
Length = 787
Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 22/47 (46%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H Y+ LD P D YDR+ L AL+ + P L D P VG
Sbjct: 17 QHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLVTPDSPTQRVG 63
>gi|148986045|ref|ZP_01819066.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP3-BS71]
gi|147921879|gb|EDK73005.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP3-BS71]
gi|301800082|emb|CBW32679.1| DNA ligase [Streptococcus pneumoniae OXC141]
Length = 652
Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV + + YY DNP +D YDR+ L L+ +PE D P + VG
Sbjct: 8 LVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPTHRVG 60
>gi|15903068|ref|NP_358618.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae R6]
gi|116516470|ref|YP_816476.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae D39]
gi|81449679|sp|Q8DPS9|DNLJ_STRR6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|122278638|sp|Q04KH2|DNLJ_STRP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|15458641|gb|AAK99828.1| DNA ligase [Streptococcus pneumoniae R6]
gi|116077046|gb|ABJ54766.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae D39]
Length = 652
Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV + + YY DNP +D YDR+ L L+ +PE D P + VG
Sbjct: 8 LVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPTHRVG 60
>gi|257066474|ref|YP_003152730.1| NAD-dependent DNA ligase LigA [Anaerococcus prevotii DSM 20548]
gi|256798354|gb|ACV29009.1| DNA ligase, NAD-dependent [Anaerococcus prevotii DSM 20548]
Length = 666
Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD PL +DG YD++ + L L+E+ + D D P VG
Sbjct: 21 YYTLDEPLVSDGEYDQIYDELRKLEEETGYVRD-DSPTQVVG 61
>gi|169834268|ref|YP_001694538.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae
Hungary19A-6]
gi|254781426|sp|B1IBQ3|DNLJ_STRPI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|168996770|gb|ACA37382.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae Hungary19A-6]
Length = 652
Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV + + YY DNP +D YDR+ L L+ +PE D P + VG
Sbjct: 8 LVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPTHRVG 60
>gi|149006206|ref|ZP_01829918.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP18-BS74]
gi|225856757|ref|YP_002738268.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae P1031]
gi|307127352|ref|YP_003879383.1| NAD-dependent DNA ligase [Streptococcus pneumoniae 670-6B]
gi|254781432|sp|C1CKI0|DNLJ_STRZP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|147761983|gb|EDK68945.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP18-BS74]
gi|225725530|gb|ACO21382.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae P1031]
gi|306484414|gb|ADM91283.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae 670-6B]
gi|332075451|gb|EGI85920.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae GA41301]
Length = 652
Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV + + YY DNP +D YDR+ L L+ +PE D P + VG
Sbjct: 8 LVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPTHRVG 60
>gi|148998387|ref|ZP_01825829.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP11-BS70]
gi|168576158|ref|ZP_02722052.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae MLV-016]
gi|194398076|ref|YP_002037745.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae G54]
gi|225861080|ref|YP_002742589.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae
Taiwan19F-14]
gi|298230922|ref|ZP_06964603.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae str. Canada
MDR_19F]
gi|298254162|ref|ZP_06977748.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae str. Canada
MDR_19A]
gi|298502866|ref|YP_003724806.1| DNA ligase (NAD(+)) [Streptococcus pneumoniae TCH8431/19A]
gi|254781424|sp|B5E4M9|DNLJ_STRP4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254781433|sp|C1CRL7|DNLJ_STRZT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|147755784|gb|EDK62829.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP11-BS70]
gi|183577935|gb|EDT98463.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae MLV-016]
gi|194357743|gb|ACF56191.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae G54]
gi|225727034|gb|ACO22885.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae Taiwan19F-14]
gi|298238461|gb|ADI69592.1| DNA ligase (NAD(+)) [Streptococcus pneumoniae TCH8431/19A]
gi|327389325|gb|EGE87670.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae GA04375]
gi|332075071|gb|EGI85542.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae GA17545]
Length = 652
Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV + + YY DNP +D YDR+ L L+ +PE D P + VG
Sbjct: 8 LVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPTHRVG 60
>gi|111658008|ref|ZP_01408712.1| hypothetical protein SpneT_02000805 [Streptococcus pneumoniae
TIGR4]
Length = 648
Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV + + YY DNP +D YDR+ L L+ +PE D P + VG
Sbjct: 4 LVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPTHRVG 56
>gi|330981936|gb|EGH80039.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. aptata str.
DSM 50252]
Length = 787
Score = 35.8 bits (81), Expect = 1.8, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 22/47 (46%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H Y+ LD P D YDR+ L AL+ + P L D P VG
Sbjct: 17 QHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLVTPDSPTQRVG 63
>gi|329667842|gb|AEB93790.1| NAD-dependent DNA ligase [Lactobacillus johnsonii DPC 6026]
Length = 668
Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 75 KW---YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
KW YY D P+ D +YD+ + L L+EQFP+L + VG
Sbjct: 22 KWADDYYAKDAPVVEDAVYDKTYQELVELEEQFPDLVTANSITQRVG 68
>gi|90579891|ref|ZP_01235699.1| DNA ligase [Vibrio angustum S14]
gi|90438776|gb|EAS63959.1| DNA ligase [Vibrio angustum S14]
Length = 670
Score = 35.8 bits (81), Expect = 1.8, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+H YY DNP D YDR+ ++L ++ PE D P VG
Sbjct: 18 YHGHRYYVEDNPEIPDAEYDRMMQQLIKIEADHPEWITVDSPSQRVG 64
>gi|168486469|ref|ZP_02710977.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC1087-00]
gi|183570508|gb|EDT91036.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC1087-00]
Length = 652
Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV + + YY DNP +D YDR+ L L+ +PE D P + VG
Sbjct: 8 LVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPTHRVG 60
>gi|149024919|ref|ZP_01836320.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP23-BS72]
gi|303259779|ref|ZP_07345754.1| DNA ligase [Streptococcus pneumoniae SP-BS293]
gi|303262954|ref|ZP_07348889.1| DNA ligase [Streptococcus pneumoniae SP14-BS292]
gi|303264916|ref|ZP_07350832.1| DNA ligase [Streptococcus pneumoniae BS397]
gi|303266897|ref|ZP_07352775.1| DNA ligase [Streptococcus pneumoniae BS457]
gi|303268933|ref|ZP_07354718.1| DNA ligase [Streptococcus pneumoniae BS458]
gi|147929542|gb|EDK80536.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP23-BS72]
gi|301794230|emb|CBW36650.1| DNA ligase [Streptococcus pneumoniae INV104]
gi|302635931|gb|EFL66431.1| DNA ligase [Streptococcus pneumoniae SP14-BS292]
gi|302638984|gb|EFL69444.1| DNA ligase [Streptococcus pneumoniae SP-BS293]
gi|302641551|gb|EFL71913.1| DNA ligase [Streptococcus pneumoniae BS458]
gi|302643595|gb|EFL73864.1| DNA ligase [Streptococcus pneumoniae BS457]
gi|302645604|gb|EFL75835.1| DNA ligase [Streptococcus pneumoniae BS397]
gi|332202976|gb|EGJ17044.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae GA47901]
Length = 652
Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV + + YY DNP +D YDR+ L L+ +PE D P + VG
Sbjct: 8 LVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPTHRVG 60
>gi|332200505|gb|EGJ14577.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae GA41317]
Length = 648
Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV + + YY DNP +D YDR+ L L+ +PE D P + VG
Sbjct: 4 LVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPTHRVG 56
>gi|294776463|ref|ZP_06741938.1| DNA ligase (NAD(+)) [Bacteroides vulgatus PC510]
gi|294449660|gb|EFG18185.1| DNA ligase (NAD(+)) [Bacteroides vulgatus PC510]
Length = 665
Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 60 MIEVEYLVKI--ALHHQKW-YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
M E+E + ++ LH + YY L+ P TD +D++ L L+E+ PE DE+ P
Sbjct: 1 MTEIERIDQLREELHRHNYNYYVLNAPEITDQEFDKLMRELQDLEEKHPEHRDENSPSMR 60
Query: 117 VG 118
VG
Sbjct: 61 VG 62
>gi|254882009|ref|ZP_05254719.1| polydeoxyribonucleotide synthase [Bacteroides sp. 4_3_47FAA]
gi|254834802|gb|EET15111.1| polydeoxyribonucleotide synthase [Bacteroides sp. 4_3_47FAA]
Length = 665
Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 60 MIEVEYLVKI--ALHHQKW-YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
M E+E + ++ LH + YY L+ P TD +D++ L L+E+ PE DE+ P
Sbjct: 1 MTEIERIDQLREELHRHNYNYYVLNAPEITDQEFDKLMRELQDLEEKHPEHRDENSPSMR 60
Query: 117 VG 118
VG
Sbjct: 61 VG 62
>gi|225858927|ref|YP_002740437.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae 70585]
gi|254781425|sp|C1C7B1|DNLJ_STRP7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|225720821|gb|ACO16675.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae 70585]
Length = 652
Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV + + YY DNP +D YDR+ L L+ +PE D P + VG
Sbjct: 8 LVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPTHRVG 60
>gi|150005810|ref|YP_001300554.1| DNA ligase [Bacteroides vulgatus ATCC 8482]
gi|237725408|ref|ZP_04555889.1| DNA ligase [Bacteroides sp. D4]
gi|319640984|ref|ZP_07995691.1| DNA ligase [Bacteroides sp. 3_1_40A]
gi|166215396|sp|A6L5G8|DNLJ_BACV8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|149934234|gb|ABR40932.1| DNA ligase [Bacteroides vulgatus ATCC 8482]
gi|229436095|gb|EEO46172.1| DNA ligase [Bacteroides dorei 5_1_36/D4]
gi|317387362|gb|EFV68234.1| DNA ligase [Bacteroides sp. 3_1_40A]
Length = 665
Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 60 MIEVEYLVKI--ALHHQKW-YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
M E+E + ++ LH + YY L+ P TD +D++ L L+E+ PE DE+ P
Sbjct: 1 MTEIERIDQLREELHRHNYNYYVLNAPEITDQEFDKLMRELQDLEEKHPEHRDENSPSMR 60
Query: 117 VG 118
VG
Sbjct: 61 VG 62
>gi|149012887|ref|ZP_01833800.1| DNA ligase [Streptococcus pneumoniae SP19-BS75]
gi|182684133|ref|YP_001835880.1| DNA ligase [Streptococcus pneumoniae CGSP14]
gi|254781428|sp|B2IPZ1|DNLJ_STRPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|147763176|gb|EDK70116.1| DNA ligase [Streptococcus pneumoniae SP19-BS75]
gi|182629467|gb|ACB90415.1| DNA ligase [Streptococcus pneumoniae CGSP14]
gi|301801994|emb|CBW34723.1| DNA ligase [Streptococcus pneumoniae INV200]
Length = 652
Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV + + YY DNP +D YDR+ L L+ +PE D P + VG
Sbjct: 8 LVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPTHRVG 60
>gi|15900984|ref|NP_345588.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae TIGR4]
gi|81531953|sp|Q97QT2|DNLJ_STRPN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|14972593|gb|AAK75228.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae TIGR4]
Length = 652
Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV + + YY DNP +D YDR+ L L+ +PE D P + VG
Sbjct: 8 LVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPTHRVG 60
>gi|148994566|ref|ZP_01823725.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP9-BS68]
gi|168488962|ref|ZP_02713161.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP195]
gi|147927160|gb|EDK78197.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP9-BS68]
gi|183572496|gb|EDT93024.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP195]
gi|332073479|gb|EGI83958.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae GA17570]
Length = 652
Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV + + YY DNP +D YDR+ L L+ +PE D P + VG
Sbjct: 8 LVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPTHRVG 60
>gi|149003762|ref|ZP_01828594.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP14-BS69]
gi|237650785|ref|ZP_04525037.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae CCRI 1974]
gi|237822373|ref|ZP_04598218.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae CCRI
1974M2]
gi|147758208|gb|EDK65210.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP14-BS69]
Length = 652
Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV + + YY DNP +D YDR+ L L+ +PE D P + VG
Sbjct: 8 LVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPTHRVG 60
>gi|227509971|ref|ZP_03940020.1| NAD-dependent DNA ligase [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
gi|227190577|gb|EEI70644.1| NAD-dependent DNA ligase [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
Length = 675
Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 75 KW---YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
KW YY D+P D +YD+ ++L L+ FP++ D P VG
Sbjct: 24 KWADEYYTYDSPSVEDSVYDQTYQQLVDLETTFPQIVTPDSPTQKVG 70
>gi|208434535|ref|YP_002266201.1| DNA ligase [Helicobacter pylori G27]
gi|254781346|sp|B5Z6Y6|DNLJ_HELPG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|208432464|gb|ACI27335.1| DNA ligase [Helicobacter pylori G27]
Length = 658
Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
Query: 64 EYLVKIAL-----HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
EYL +IA HH YY LD + +D +YD + + L A +E+ P + P VG
Sbjct: 7 EYLERIAYLNTLSHH---YYNLDESIVSDAVYDELYQELKAYEEKNPNDIQANSPTQKVG 63
>gi|110679832|ref|YP_682839.1| DNA ligase, NAD-dependent [Roseobacter denitrificans OCh 114]
gi|123172419|sp|Q166E0|DNLJ_ROSDO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|109455948|gb|ABG32153.1| DNA ligase, NAD-dependent [Roseobacter denitrificans OCh 114]
Length = 705
Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 32/66 (48%)
Query: 53 SLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDH 112
SL++ A E+ L + Y+ D P+ +D +D R A++E+FP L D
Sbjct: 8 SLTEKAAKKELSKLADLLDQANTAYHANDAPIISDADFDAYKRRNLAIEERFPHLKRADS 67
Query: 113 PWNTVG 118
P + VG
Sbjct: 68 PTDRVG 73
>gi|330897709|gb|EGH29128.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. japonica
str. M301072PT]
Length = 657
Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 22/46 (47%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H Y+ LD P D YDR+ L AL+ + P L D P VG
Sbjct: 18 HNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLVTPDSPTQRVG 63
>gi|307067701|ref|YP_003876667.1| NAD-dependent DNA ligase (contains BRCT domain type II)
[Streptococcus pneumoniae AP200]
gi|306409238|gb|ADM84665.1| NAD-dependent DNA ligase (contains BRCT domain type II)
[Streptococcus pneumoniae AP200]
Length = 648
Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV + + YY DNP +D YDR+ L L+ +PE D P + VG
Sbjct: 4 LVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPTHRVG 56
>gi|119356312|ref|YP_910956.1| DNA ligase, NAD-dependent [Chlorobium phaeobacteroides DSM 266]
gi|166215573|sp|A1BDQ5|DNLJ_CHLPD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|119353661|gb|ABL64532.1| DNA ligase, NAD-dependent [Chlorobium phaeobacteroides DSM 266]
Length = 676
Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 28/56 (50%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+E L + H YY P +D +DR+ ERL L++ FP+ D P + VG
Sbjct: 11 IEELRREINRHNTLYYVDARPEISDYEFDRLMERLIELEKAFPDFVTPDSPSHRVG 66
>gi|325267489|ref|ZP_08134142.1| NAD-dependent DNA ligase LigA [Kingella denitrificans ATCC 33394]
gi|324981014|gb|EGC16673.1| NAD-dependent DNA ligase LigA [Kingella denitrificans ATCC 33394]
Length = 804
Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 27/56 (48%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV+ + YY LD P D YDR+ L+ L+ ++P+ + P VG
Sbjct: 32 IRTLVQTLNRYAHEYYTLDAPSVPDAEYDRLYRELETLEAEYPQFRLPESPTQRVG 87
>gi|311029281|ref|ZP_07707371.1| NAD-dependent DNA ligase LigA [Bacillus sp. m3-13]
Length = 668
Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
Y+ LD P +D YD + + L L+++ PEL ED P VG
Sbjct: 24 YHVLDKPSVSDAEYDSLLQELLTLEKEHPELQTEDSPTQRVG 65
>gi|295394422|ref|ZP_06804646.1| NAD-dependent DNA ligase LigA [Brevibacterium mcbrellneri ATCC
49030]
gi|294972774|gb|EFG48625.1| NAD-dependent DNA ligase LigA [Brevibacterium mcbrellneri ATCC
49030]
Length = 740
Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H++ YY D P +D +D + L+ L+ +PEL +D P VG
Sbjct: 36 HREAYYVHDAPKISDKEFDELVHALEDLESAYPELARDDSPTQKVG 81
>gi|332359434|gb|EGJ37254.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK355]
Length = 652
Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LVK+ + YY D P +D YDR+ L L+E++P D P + VG
Sbjct: 8 LVKLLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDILPDSPTHRVG 60
>gi|163782033|ref|ZP_02177032.1| D-tyrosyl-tRNA deacylase [Hydrogenivirga sp. 128-5-R1-1]
gi|159882565|gb|EDP76070.1| D-tyrosyl-tRNA deacylase [Hydrogenivirga sp. 128-5-R1-1]
Length = 715
Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 31 EAKFLPNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLY 90
E + + R L S L++ +K K EA V+ L ++ +H YY +P+ +D Y
Sbjct: 7 ERELIELTRKLLSELERIRKA---GKEEAQEYVQELREVINYHDYKYYVQASPVISDYEY 63
Query: 91 DRVSERLDALQEQFPELFDEDHPWNTV 117
D++ L L++++PEL D P V
Sbjct: 64 DQLFRALRDLEKKYPELITPDSPTQRV 90
>gi|160945211|ref|ZP_02092437.1| hypothetical protein FAEPRAM212_02730 [Faecalibacterium prausnitzii
M21/2]
gi|158442942|gb|EDP19947.1| hypothetical protein FAEPRAM212_02730 [Faecalibacterium prausnitzii
M21/2]
Length = 671
Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 28/61 (45%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+A V+ L I + + YY D P D YD ++ L L+ QFP+L P V
Sbjct: 8 QAKKRVKELRAIIEKNNRLYYDQDAPELEDFEYDALTRELKELEAQFPQLVTAASPTQKV 67
Query: 118 G 118
G
Sbjct: 68 G 68
>gi|33864448|ref|NP_896008.1| NAD-dependent DNA ligase LigA [Prochlorococcus marinus str. MIT
9313]
gi|81576658|sp|Q7V3Z9|DNLJ_PROMM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|33641228|emb|CAE22358.1| NAD-dependent DNA ligase [Prochlorococcus marinus str. MIT 9313]
Length = 696
Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 52 TSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
TS++ + E+ L+ A H YY LD P D +YDR+ L L+ + L D
Sbjct: 4 TSITPPKRAAELRQLLNQAAHS---YYVLDTPTMEDAVYDRLYRELLNLEAKDSSLLTPD 60
Query: 112 HPWNTVG 118
P +G
Sbjct: 61 SPTQRIG 67
>gi|77409440|ref|ZP_00786135.1| DNA ligase, NAD-dependent [Streptococcus agalactiae COH1]
gi|77171952|gb|EAO75126.1| DNA ligase, NAD-dependent [Streptococcus agalactiae COH1]
Length = 643
Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 75 KWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
K YY DNP +D YD++ L L+EQ PE + P + VG
Sbjct: 8 KEYYTQDNPTVSDSQYDQLYRELVELEEQHPENILPNSPTHRVG 51
>gi|283832193|ref|ZP_06351934.1| DNA ligase, NAD-dependent [Citrobacter youngae ATCC 29220]
gi|291071830|gb|EFE09939.1| DNA ligase, NAD-dependent [Citrobacter youngae ATCC 29220]
Length = 671
Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YD + +L L+ PEL D P VG
Sbjct: 17 HHEYLYHVMDAPEIPDVEYDLLMHKLQWLEALHPELITPDSPTQRVG 63
>gi|257439787|ref|ZP_05615542.1| DNA ligase, NAD-dependent [Faecalibacterium prausnitzii A2-165]
gi|257197807|gb|EEU96091.1| DNA ligase, NAD-dependent [Faecalibacterium prausnitzii A2-165]
Length = 209
Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+A E L I + + YY D P D YD ++ L AL+ +FP+L + P V
Sbjct: 5 QARKRAEELRVIIERNNRLYYDQDAPELEDFEYDALTRELKALEAEFPQLVTANSPTQKV 64
Query: 118 G 118
G
Sbjct: 65 G 65
>gi|167586849|ref|ZP_02379237.1| DNA ligase, NAD-dependent [Burkholderia ubonensis Bu]
Length = 691
Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 20/42 (47%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ L ++ PEL D P VG
Sbjct: 31 YYVLDQPDLPDAEYDRLFLELQQIEADHPELVTPDSPTQRVG 72
>gi|326776439|ref|ZP_08235704.1| DNA ligase, NAD-dependent [Streptomyces cf. griseus XylebKG-1]
gi|326656772|gb|EGE41618.1| DNA ligase, NAD-dependent [Streptomyces cf. griseus XylebKG-1]
Length = 743
Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H+ YY D P+ +D +DR L+AL+E+ P L D P V
Sbjct: 31 HRFRYYVKDQPVVSDADFDRQLRSLEALEEEHPSLRTPDSPTQKVA 76
>gi|254779395|ref|YP_003057500.1| NAD-dependent DNA ligase LigA [Helicobacter pylori B38]
gi|254001306|emb|CAX29287.1| DNA ligase (NAD(+)) [Helicobacter pylori B38]
Length = 656
Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
Query: 64 EYLVKIAL-----HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
EYL +IA HH YY LD + +D +YD + + L A +E+ P + P VG
Sbjct: 7 EYLERIAYLNTLSHH---YYNLDESIVSDAVYDELYQELKAYEEENPNDIQANSPTQKVG 63
>gi|331013366|gb|EGH93422.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. tabaci ATCC
11528]
Length = 787
Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 22/46 (47%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H Y+ LD P D YDR+ L AL+ + P L D P VG
Sbjct: 18 HNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLVTPDSPTQRVG 63
>gi|330939980|gb|EGH43181.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. pisi str.
1704B]
Length = 731
Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 22/47 (46%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H Y+ LD P D YDR+ L AL+ + P L D P VG
Sbjct: 17 QHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLVTPDSPTQRVG 63
>gi|182435814|ref|YP_001823533.1| NAD-dependent DNA ligase LigA [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|254778153|sp|B1VZW1|DNLJ2_STRGG RecName: Full=DNA ligase 2; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] 2
gi|178464330|dbj|BAG18850.1| putative DNA ligase [Streptomyces griseus subsp. griseus NBRC
13350]
Length = 743
Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H+ YY D P+ +D +DR L+AL+E+ P L D P V
Sbjct: 31 HRFRYYVKDQPVVSDADFDRQLRSLEALEEEHPSLRTPDSPTQKVA 76
>gi|293363574|ref|ZP_06610330.1| DNA ligase (NAD(+)) [Mycoplasma alligatoris A21JP2]
gi|292552923|gb|EFF41677.1| DNA ligase (NAD(+)) [Mycoplasma alligatoris A21JP2]
Length = 660
Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 74 QKW---YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
KW YY LD P TD +YD+ + L ++ +PE E+ P +G
Sbjct: 17 NKWNNEYYNLDTPSVTDEVYDQEYQELLEIESMYPEAILENSPSQIIG 64
>gi|255327262|ref|ZP_05368336.1| DNA ligase, NAD-dependent [Rothia mucilaginosa ATCC 25296]
gi|255295542|gb|EET74885.1| DNA ligase, NAD-dependent [Rothia mucilaginosa ATCC 25296]
Length = 735
Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 74 QKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ YY D P +D YD++ RL+ ++ + P + D P VG
Sbjct: 38 RRAYYNEDAPFLSDAEYDKLYRRLEIIEAEHPLIIANDSPTQEVG 82
>gi|146296740|ref|YP_001180511.1| DNA ligase, NAD-dependent [Caldicellulosiruptor saccharolyticus DSM
8903]
gi|166215569|sp|A4XK85|DNLJ_CALS8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|145410316|gb|ABP67320.1| DNA ligase, NAD-dependent [Caldicellulosiruptor saccharolyticus DSM
8903]
Length = 673
Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV + +H YY DNP +D YD + L L++Q+PE D P VG
Sbjct: 12 LVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYIFPDSPTQRVG 64
>gi|303239321|ref|ZP_07325849.1| DNA ligase, NAD-dependent [Acetivibrio cellulolyticus CD2]
gi|302593107|gb|EFL62827.1| DNA ligase, NAD-dependent [Acetivibrio cellulolyticus CD2]
Length = 663
Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+E L K +H YY D+ +D YD++S L L+++ PEL + P VG
Sbjct: 7 IEELRKTIEYHNDRYYNQDDAEISDYEYDQLSLELRKLEQEHPELALTNSPTQKVG 62
>gi|265753576|ref|ZP_06088931.1| DNA ligase, NAD-dependent [Bacteroides sp. 3_1_33FAA]
gi|263235290|gb|EEZ20814.1| DNA ligase, NAD-dependent [Bacteroides sp. 3_1_33FAA]
Length = 665
Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 60 MIEVEYLVKI--ALHHQKW-YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
M E+E + ++ LH + YY L+ P TD +D++ L L+E+ PE DE+ P
Sbjct: 1 MTEIERIDQLREELHRHNYNYYVLNAPEITDQEFDKLMRELQDLEEKHPEHRDENSPSMR 60
Query: 117 VG 118
VG
Sbjct: 61 VG 62
>gi|148989161|ref|ZP_01820551.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae SP6-BS73]
gi|147925384|gb|EDK76462.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae SP6-BS73]
Length = 374
Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV + + YY DNP +D YDR+ L L+ +PE D P + VG
Sbjct: 4 LVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPTHRVG 56
>gi|307269776|ref|ZP_07551106.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX4248]
gi|306513886|gb|EFM82488.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX4248]
Length = 676
Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY D P D +YDR+ + L ++ +FP+L D P VG
Sbjct: 29 YYVKDQPSVEDYVYDRLYKELVDIETEFPDLITPDSPTQRVG 70
>gi|256959858|ref|ZP_05564029.1| NAD-dependent DNA ligase [Enterococcus faecalis Merz96]
gi|293385046|ref|ZP_06630880.1| DNA ligase, NAD-dependent [Enterococcus faecalis R712]
gi|293389317|ref|ZP_06633778.1| DNA ligase, NAD-dependent [Enterococcus faecalis S613]
gi|312906035|ref|ZP_07765048.1| DNA ligase, NAD-dependent [Enterococcus faecalis DAPTO 512]
gi|312909381|ref|ZP_07768237.1| DNA ligase, NAD-dependent [Enterococcus faecalis DAPTO 516]
gi|256950354|gb|EEU66986.1| NAD-dependent DNA ligase [Enterococcus faecalis Merz96]
gi|291077724|gb|EFE15088.1| DNA ligase, NAD-dependent [Enterococcus faecalis R712]
gi|291081339|gb|EFE18302.1| DNA ligase, NAD-dependent [Enterococcus faecalis S613]
gi|310628030|gb|EFQ11313.1| DNA ligase, NAD-dependent [Enterococcus faecalis DAPTO 512]
gi|311290405|gb|EFQ68961.1| DNA ligase, NAD-dependent [Enterococcus faecalis DAPTO 516]
Length = 676
Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY D P D +YDR+ + L ++ +FP+L D P VG
Sbjct: 29 YYVKDQPSVEDYVYDRLYKELVDIETEFPDLITPDSPTQRVG 70
>gi|255971181|ref|ZP_05421767.1| NAD-dependent DNA ligase [Enterococcus faecalis T1]
gi|255962199|gb|EET94675.1| NAD-dependent DNA ligase [Enterococcus faecalis T1]
Length = 676
Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY D P D +YDR+ + L ++ +FP+L D P VG
Sbjct: 29 YYVKDQPSVEDYVYDRLYKELVDIETEFPDLITPDSPTQRVG 70
>gi|237757130|ref|ZP_04585563.1| DNA ligase, NAD-dependent [Sulfurihydrogenibium yellowstonense
SS-5]
gi|237690707|gb|EEP59882.1| DNA ligase, NAD-dependent [Sulfurihydrogenibium yellowstonense
SS-5]
Length = 490
Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
L+K EA VE L ++ H YY L P+ +D YD++ + L ++ ++PEL D P
Sbjct: 25 LTKEEAKKIVEDLREVIRFHDWRYYILAQPVISDYEYDKLFKLLKDIENKYPELITPDSP 84
Query: 114 WNTV 117
+
Sbjct: 85 TQRI 88
>gi|237709923|ref|ZP_04540404.1| DNA ligase [Bacteroides sp. 9_1_42FAA]
gi|229456016|gb|EEO61737.1| DNA ligase [Bacteroides sp. 9_1_42FAA]
Length = 665
Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 60 MIEVEYLVKI--ALHHQKW-YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
M E+E + ++ LH + YY L+ P TD +D++ L L+E+ PE DE+ P
Sbjct: 1 MTEIERIDQLREELHRHNYNYYVLNAPEITDQEFDKLMRELQDLEEKHPEHRDENSPSMR 60
Query: 117 VG 118
VG
Sbjct: 61 VG 62
>gi|229548668|ref|ZP_04437393.1| DNA ligase, NAD-dependent [Enterococcus faecalis ATCC 29200]
gi|257420983|ref|ZP_05597973.1| DNA ligase [Enterococcus faecalis X98]
gi|312953107|ref|ZP_07771956.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0102]
gi|229306184|gb|EEN72180.1| DNA ligase, NAD-dependent [Enterococcus faecalis ATCC 29200]
gi|257162807|gb|EEU92767.1| DNA ligase [Enterococcus faecalis X98]
gi|310628941|gb|EFQ12224.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0102]
gi|315153982|gb|EFT97998.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0031]
gi|315156746|gb|EFU00763.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0043]
Length = 676
Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY D P D +YDR+ + L ++ +FP+L D P VG
Sbjct: 29 YYVKDQPSVEDYVYDRLYKELVDIETEFPDLITPDSPTQRVG 70
>gi|260774893|ref|ZP_05883794.1| DNA ligase [Vibrio coralliilyticus ATCC BAA-450]
gi|260609148|gb|EEX35306.1| DNA ligase [Vibrio coralliilyticus ATCC BAA-450]
Length = 669
Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+H YY DNP D YDR+ L L+ + P+L D P VG
Sbjct: 18 YHGVKYYVEDNPEVPDAEYDRLMRELLELEAEHPDLVSIDSPSQRVG 64
>gi|212693183|ref|ZP_03301311.1| hypothetical protein BACDOR_02690 [Bacteroides dorei DSM 17855]
gi|212664288|gb|EEB24860.1| hypothetical protein BACDOR_02690 [Bacteroides dorei DSM 17855]
Length = 665
Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 60 MIEVEYLVKI--ALHHQKW-YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
M E+E + ++ LH + YY L+ P TD +D++ L L+E+ PE DE+ P
Sbjct: 1 MTEIERIDQLREELHRHNYNYYVLNAPEITDQEFDKLMRELQDLEEKHPEHRDENSPSMR 60
Query: 117 VG 118
VG
Sbjct: 61 VG 62
>gi|188527537|ref|YP_001910224.1| NAD-dependent DNA ligase LigA [Helicobacter pylori Shi470]
gi|254781347|sp|B2UTL2|DNLJ_HELPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|188143777|gb|ACD48194.1| NAD-dependent DNA ligase LigA [Helicobacter pylori Shi470]
Length = 656
Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S+ E + +EYL ++ HH YY LD+ + +D +YD + + L A + + P + P
Sbjct: 4 SQKEYLERIEYLNTLS-HH---YYNLDDSIVSDAVYDELYQELKAYEGKNPNSIQANSPT 59
Query: 115 NTVG 118
VG
Sbjct: 60 QKVG 63
>gi|330986172|gb|EGH84275.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. lachrymans
str. M301315]
Length = 787
Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 22/46 (47%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H Y+ LD P D YDR+ L AL+ + P L D P VG
Sbjct: 18 HNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLVTPDSPTQRVG 63
>gi|329576880|gb|EGG58365.1| DNA ligase [Enterococcus faecalis TX1467]
Length = 676
Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY D P D +YDR+ + L ++ +FP+L D P VG
Sbjct: 29 YYVKDQPSVEDYVYDRLYKELVDIETEFPDLITPDSPTQRVG 70
>gi|320323491|gb|EFW79576.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. glycinea
str. B076]
Length = 787
Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 22/46 (47%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H Y+ LD P D YDR+ L AL+ + P L D P VG
Sbjct: 18 HNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLVTPDSPTQRVG 63
>gi|315145225|gb|EFT89241.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX2141]
Length = 676
Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY D P D +YDR+ + L ++ +FP+L D P VG
Sbjct: 29 YYVKDQPSVEDYVYDRLYKELVDIETEFPDLITPDSPTQRVG 70
>gi|312900318|ref|ZP_07759629.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0470]
gi|311292506|gb|EFQ71062.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0470]
Length = 676
Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY D P D +YDR+ + L ++ +FP+L D P VG
Sbjct: 29 YYVKDQPSVEDYVYDRLYKELVDIETEFPDLITPDSPTQRVG 70
>gi|302185110|ref|ZP_07261783.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. syringae
642]
Length = 787
Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 22/46 (47%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H Y+ LD P D YDR+ L AL+ + P L D P VG
Sbjct: 18 HNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLVTPDSPTQRVG 63
>gi|227517688|ref|ZP_03947737.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0104]
gi|257083650|ref|ZP_05578011.1| NAD-dependent DNA ligase [Enterococcus faecalis Fly1]
gi|227074843|gb|EEI12806.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0104]
gi|256991680|gb|EEU78982.1| NAD-dependent DNA ligase [Enterococcus faecalis Fly1]
gi|315146961|gb|EFT90977.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX4244]
Length = 676
Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY D P D +YDR+ + L ++ +FP+L D P VG
Sbjct: 29 YYVKDQPSVEDYVYDRLYKELVDIETEFPDLITPDSPTQRVG 70
>gi|312135376|ref|YP_004002714.1| DNA ligase, nad-dependent [Caldicellulosiruptor owensensis OL]
gi|311775427|gb|ADQ04914.1| DNA ligase, NAD-dependent [Caldicellulosiruptor owensensis OL]
Length = 673
Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV + +H YY DNP +D YD + L L++Q+PE D P VG
Sbjct: 12 LVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYVLPDSPTQRVG 64
>gi|256617609|ref|ZP_05474455.1| NAD-dependent DNA ligase [Enterococcus faecalis ATCC 4200]
gi|257089149|ref|ZP_05583510.1| NAD-dependent DNA ligase [Enterococcus faecalis CH188]
gi|312904259|ref|ZP_07763421.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0635]
gi|256597136|gb|EEU16312.1| NAD-dependent DNA ligase [Enterococcus faecalis ATCC 4200]
gi|256997961|gb|EEU84481.1| NAD-dependent DNA ligase [Enterococcus faecalis CH188]
gi|310632355|gb|EFQ15638.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0635]
gi|315578805|gb|EFU90996.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0630]
Length = 676
Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY D P D +YDR+ + L ++ +FP+L D P VG
Sbjct: 29 YYVKDQPSVEDYVYDRLYKELVDIETEFPDLITPDSPTQRVG 70
>gi|229546559|ref|ZP_04435284.1| NAD-dependent DNA ligase [Enterococcus faecalis TX1322]
gi|256854411|ref|ZP_05559775.1| DNA ligase [Enterococcus faecalis T8]
gi|307274689|ref|ZP_07555861.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX2134]
gi|307296388|ref|ZP_07576212.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0411]
gi|229308304|gb|EEN74291.1| NAD-dependent DNA ligase [Enterococcus faecalis TX1322]
gi|256709971|gb|EEU25015.1| DNA ligase [Enterococcus faecalis T8]
gi|306496043|gb|EFM65628.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0411]
gi|306508618|gb|EFM77716.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX2134]
gi|315029103|gb|EFT41035.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX4000]
gi|315157732|gb|EFU01749.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0312]
gi|323479918|gb|ADX79357.1| DNA ligase, NAD-dependent [Enterococcus faecalis 62]
Length = 676
Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY D P D +YDR+ + L ++ +FP+L D P VG
Sbjct: 29 YYVKDQPSVEDYVYDRLYKELVDIETEFPDLITPDSPTQRVG 70
>gi|29375318|ref|NP_814472.1| DNA ligase, NAD-dependent [Enterococcus faecalis V583]
gi|227554838|ref|ZP_03984885.1| DNA ligase, NAD-dependent [Enterococcus faecalis HH22]
gi|256761492|ref|ZP_05502072.1| NAD-dependent DNA ligase [Enterococcus faecalis T3]
gi|257415292|ref|ZP_05592286.1| NAD-dependent DNA ligase [Enterococcus faecalis AR01/DG]
gi|257418334|ref|ZP_05595328.1| NAD-dependent DNA ligase [Enterococcus faecalis T11]
gi|81437298|sp|Q837V6|DNLJ_ENTFA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|29342778|gb|AAO80542.1| DNA ligase, NAD-dependent [Enterococcus faecalis V583]
gi|227176007|gb|EEI56979.1| DNA ligase, NAD-dependent [Enterococcus faecalis HH22]
gi|256682743|gb|EEU22438.1| NAD-dependent DNA ligase [Enterococcus faecalis T3]
gi|257157120|gb|EEU87080.1| NAD-dependent DNA ligase [Enterococcus faecalis ARO1/DG]
gi|257160162|gb|EEU90122.1| NAD-dependent DNA ligase [Enterococcus faecalis T11]
gi|315031451|gb|EFT43383.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0017]
gi|315166929|gb|EFU10946.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX1341]
gi|315575350|gb|EFU87541.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0309B]
gi|315581380|gb|EFU93571.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0309A]
Length = 676
Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY D P D +YDR+ + L ++ +FP+L D P VG
Sbjct: 29 YYVKDQPSVEDYVYDRLYKELVDIETEFPDLITPDSPTQRVG 70
>gi|116074145|ref|ZP_01471407.1| DNA ligase [Synechococcus sp. RS9916]
gi|116069450|gb|EAU75202.1| DNA ligase [Synechococcus sp. RS9916]
Length = 691
Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E+ L+ A H YY LD P+ D +YDR+ L L+ P L D P VG
Sbjct: 11 ELRGLLNTAAHA---YYVLDAPVMEDPVYDRLYRELLELESADPSLVTVDSPTQRVG 64
>gi|327475235|gb|AEA77212.1| DNA ligase [Exiguobacterium sp. EPVM]
Length = 664
Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ L ++ +PEL D P VG
Sbjct: 21 YYVLDRPSVPDAEYDRLMNELIEIETDYPELRSPDSPTQRVG 62
>gi|326392616|ref|ZP_08213952.1| DNA ligase (NAD(+)) [Thermoanaerobacter ethanolicus JW 200]
gi|325991342|gb|EGD49998.1| DNA ligase (NAD(+)) [Thermoanaerobacter ethanolicus JW 200]
Length = 210
Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+H YY LD P +D YD + L L+E++PE D P VG
Sbjct: 21 YHNYRYYVLDQPEISDYEYDMLMRELIELEEKYPEFKTPDSPSQRVG 67
>gi|256957407|ref|ZP_05561578.1| NAD-dependent DNA ligase [Enterococcus faecalis DS5]
gi|257077597|ref|ZP_05571958.1| NAD-dependent DNA ligase [Enterococcus faecalis JH1]
gi|294779927|ref|ZP_06745308.1| DNA ligase (NAD(+)) [Enterococcus faecalis PC1.1]
gi|256947903|gb|EEU64535.1| NAD-dependent DNA ligase [Enterococcus faecalis DS5]
gi|256985627|gb|EEU72929.1| NAD-dependent DNA ligase [Enterococcus faecalis JH1]
gi|294452976|gb|EFG21397.1| DNA ligase (NAD(+)) [Enterococcus faecalis PC1.1]
gi|295114065|emb|CBL32702.1| DNA ligase, NAD-dependent [Enterococcus sp. 7L76]
gi|315036101|gb|EFT48033.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0027]
gi|315172192|gb|EFU16209.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX1346]
Length = 676
Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY D P D +YDR+ + L ++ +FP+L D P VG
Sbjct: 29 YYVKDQPSVEDYVYDRLYKELVDIETEFPDLITPDSPTQRVG 70
>gi|255973805|ref|ZP_05424391.1| NAD-dependent DNA ligase [Enterococcus faecalis T2]
gi|256964440|ref|ZP_05568611.1| NAD-dependent DNA ligase [Enterococcus faecalis HIP11704]
gi|257080988|ref|ZP_05575349.1| NAD-dependent DNA ligase [Enterococcus faecalis E1Sol]
gi|307272536|ref|ZP_07553789.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0855]
gi|307284516|ref|ZP_07564678.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0860]
gi|255966677|gb|EET97299.1| NAD-dependent DNA ligase [Enterococcus faecalis T2]
gi|256954936|gb|EEU71568.1| NAD-dependent DNA ligase [Enterococcus faecalis HIP11704]
gi|256989018|gb|EEU76320.1| NAD-dependent DNA ligase [Enterococcus faecalis E1Sol]
gi|306503193|gb|EFM72447.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0860]
gi|306510821|gb|EFM79838.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0855]
gi|315151576|gb|EFT95592.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0012]
gi|315170712|gb|EFU14729.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX1342]
gi|327534312|gb|AEA93146.1| NAD-dependent DNA ligase LigA [Enterococcus faecalis OG1RF]
Length = 676
Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY D P D +YDR+ + L ++ +FP+L D P VG
Sbjct: 29 YYVKDQPSVEDYVYDRLYKELVDIETEFPDLITPDSPTQRVG 70
>gi|257086082|ref|ZP_05580443.1| NAD-dependent DNA ligase [Enterococcus faecalis D6]
gi|256994112|gb|EEU81414.1| NAD-dependent DNA ligase [Enterococcus faecalis D6]
gi|315025779|gb|EFT37711.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX2137]
Length = 676
Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY D P D +YDR+ + L ++ +FP+L D P VG
Sbjct: 29 YYVKDQPSVEDYVYDRLYKELVDIETEFPDLITPDSPTQRVG 70
>gi|300861866|ref|ZP_07107946.1| DNA ligase (NAD(+)) [Enterococcus faecalis TUSoD Ef11]
gi|300848391|gb|EFK76148.1| DNA ligase (NAD(+)) [Enterococcus faecalis TUSoD Ef11]
Length = 676
Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY D P D +YDR+ + L ++ +FP+L D P VG
Sbjct: 29 YYVKDQPSVEDYVYDRLYKELVDIETEFPDLITPDSPTQRVG 70
>gi|225025741|ref|ZP_03714933.1| hypothetical protein EIKCOROL_02645 [Eikenella corrodens ATCC
23834]
gi|224941522|gb|EEG22731.1| hypothetical protein EIKCOROL_02645 [Eikenella corrodens ATCC
23834]
Length = 778
Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV+ + YY LD P D YDR+ L+AL+ + P+ + P VG
Sbjct: 8 IRTLVQTLNRYAHEYYTLDAPSVPDAEYDRLYRELEALEAEHPQFRLPESPTQRVG 63
>gi|71737941|ref|YP_274013.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|123775130|sp|Q48KR2|DNLJ_PSE14 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|71558494|gb|AAZ37705.1| DNA ligase, NAD-dependent [Pseudomonas syringae pv. phaseolicola
1448A]
gi|320329466|gb|EFW85458.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. glycinea
str. race 4]
Length = 787
Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 22/46 (47%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H Y+ LD P D YDR+ L AL+ + P L D P VG
Sbjct: 18 HNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLVTPDSPTQRVG 63
>gi|269836970|ref|YP_003319198.1| DNA ligase, NAD-dependent [Sphaerobacter thermophilus DSM 20745]
gi|269786233|gb|ACZ38376.1| DNA ligase, NAD-dependent [Sphaerobacter thermophilus DSM 20745]
Length = 680
Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 20/42 (47%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P +D YD + L L+ PEL D P VG
Sbjct: 24 YYVLDQPSVSDAEYDALMNELRELEAAHPELITPDSPTQRVG 65
>gi|115352108|ref|YP_773947.1| DNA ligase [Burkholderia ambifaria AMMD]
gi|122322835|sp|Q0BE10|DNLJ_BURCM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|115282096|gb|ABI87613.1| DNA ligase, NAD-dependent [Burkholderia ambifaria AMMD]
Length = 691
Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 20/42 (47%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ L L+ P+L D P VG
Sbjct: 31 YYVLDQPDLPDAEYDRLFGELQQLETDHPDLVTPDSPTQRVG 72
>gi|260911472|ref|ZP_05918061.1| DNA ligase [Prevotella sp. oral taxon 472 str. F0295]
gi|260634401|gb|EEX52502.1| DNA ligase [Prevotella sp. oral taxon 472 str. F0295]
Length = 666
Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH YY ++P +D +D + L L+ + PE++D + P VG
Sbjct: 16 HHNYLYYVQNSPTLSDQEFDHLMRELQDLEAKHPEVYDPNSPTQRVG 62
>gi|82523924|emb|CAI78646.1| NAD-dependent DNA ligase [uncultured delta proteobacterium]
Length = 670
Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 26/53 (49%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L +I +H K YY+ D P +D YD + L L+ QFP+ P VG
Sbjct: 14 LRQIIEYHNKRYYQQDAPEISDAEYDLLMRELHNLEAQFPDDELASSPTQRVG 66
>gi|330889906|gb|EGH22567.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. mori str.
301020]
Length = 787
Score = 35.8 bits (81), Expect = 2.3, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 22/46 (47%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H Y+ LD P D YDR+ L AL+ + P L D P VG
Sbjct: 18 HNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLVTPDSPTQRVG 63
>gi|312796238|ref|YP_004029160.1| NAD-dependent DNA ligase [Burkholderia rhizoxinica HKI 454]
gi|312168013|emb|CBW75016.1| NAD-dependent DNA ligase (EC 6.5.1.2) [Burkholderia rhizoxinica HKI
454]
Length = 681
Score = 35.8 bits (81), Expect = 2.3, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YD++ + L+ ++ P+L D P VG
Sbjct: 31 YYVLDRPEIPDAEYDKLFKELEQIEADHPDLITPDSPTQRVG 72
>gi|325681379|ref|ZP_08160905.1| DNA ligase (NAD+) [Ruminococcus albus 8]
gi|324106869|gb|EGC01159.1| DNA ligase (NAD+) [Ruminococcus albus 8]
Length = 665
Score = 35.8 bits (81), Expect = 2.3, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 27/63 (42%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
K A ++ LV +H YY D +D YD + L L+ Q+PE D P
Sbjct: 10 KDNAKKRIDELVATLNYHAHLYYVEDRNEISDYDYDMMQNELKKLEAQYPEFIRPDSPTQ 69
Query: 116 TVG 118
VG
Sbjct: 70 RVG 72
>gi|332291077|ref|YP_004429686.1| DNA ligase, NAD-dependent [Krokinobacter diaphorus 4H-3-7-5]
gi|332169163|gb|AEE18418.1| DNA ligase, NAD-dependent [Krokinobacter diaphorus 4H-3-7-5]
Length = 664
Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY LD P +D +D+ ++L+AL+ PE D + P + VG
Sbjct: 17 HNHSYYVLDTPTISDFDFDQKLKQLEALEAAHPEFDDPNSPTHRVG 62
>gi|317056400|ref|YP_004104867.1| DNA ligase, NAD-dependent [Ruminococcus albus 7]
gi|315448669|gb|ADU22233.1| DNA ligase, NAD-dependent [Ruminococcus albus 7]
Length = 659
Score = 35.4 bits (80), Expect = 2.3, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 30/63 (47%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
K A ++ LV+I +H + YY D +D YD + L L+ P+L +D P
Sbjct: 4 KESAKKRIDELVEILNYHSRLYYVEDRNEISDYEYDMLQNELKKLEAANPDLIRKDSPTQ 63
Query: 116 TVG 118
VG
Sbjct: 64 RVG 66
>gi|294140434|ref|YP_003556412.1| DNA ligase, NAD-dependent [Shewanella violacea DSS12]
gi|293326903|dbj|BAJ01634.1| DNA ligase, NAD-dependent [Shewanella violacea DSS12]
Length = 683
Score = 35.4 bits (80), Expect = 2.3, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 30/73 (41%)
Query: 46 DKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFP 105
DK + S + E+ L I H YY D P D YDR+ ++L L+ P
Sbjct: 4 DKIQDHASFNIQAVAQEIAELTDILNGHNYCYYVDDAPSIPDAEYDRLLKQLKVLETAHP 63
Query: 106 ELFDEDHPWNTVG 118
E D P VG
Sbjct: 64 EYCFPDSPTQRVG 76
>gi|290967938|ref|ZP_06559488.1| DNA ligase (NAD(+)) [Megasphaera genomosp. type_1 str. 28L]
gi|290782077|gb|EFD94655.1| DNA ligase (NAD(+)) [Megasphaera genomosp. type_1 str. 28L]
Length = 668
Score = 35.4 bits (80), Expect = 2.3, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P +D YD + L+ L++++P+ D P +G
Sbjct: 26 YYTLDAPTVSDYEYDMLYRELETLEKKYPQWVTPDSPTQRIG 67
>gi|121611375|ref|YP_999182.1| DNA ligase [Verminephrobacter eiseniae EF01-2]
gi|166216275|sp|A1WRA7|DNLJ_VEREI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|121556015|gb|ABM60164.1| DNA ligase, NAD-dependent [Verminephrobacter eiseniae EF01-2]
Length = 693
Score = 35.4 bits (80), Expect = 2.3, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 28/69 (40%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
LD + +A + L + +H Y+ LD P D YDR + L AL+
Sbjct: 5 LDHCPDPAQMDPAQADARIRALREQLVHWAHQYHVLDAPSVPDAEYDRAFQALQALEAAH 64
Query: 105 PELFDEDHP 113
P L D P
Sbjct: 65 PALITPDSP 73
>gi|229823252|ref|ZP_04449321.1| hypothetical protein GCWU000282_00550 [Catonella morbi ATCC 51271]
gi|229787418|gb|EEP23532.1| hypothetical protein GCWU000282_00550 [Catonella morbi ATCC 51271]
Length = 671
Score = 35.4 bits (80), Expect = 2.3, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
EV++L+ +H YY LD L +D YD + L+ ++ PE D P VG
Sbjct: 14 EVKHLLNDYAYH---YYVLDQSLVSDASYDALYRELEEIEAAHPEWITPDSPTQRVG 67
>gi|218961271|ref|YP_001741046.1| DNA ligase, NAD-dependent [Candidatus Cloacamonas acidaminovorans]
gi|167729928|emb|CAO80840.1| DNA ligase, NAD-dependent [Candidatus Cloacamonas acidaminovorans]
Length = 667
Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH + YY L P +D YD + + L L+ Q+ E E+ P VG
Sbjct: 19 HHNRLYYTLAKPEISDYEYDMLVKELQELEAQYAEGAVEESPTQKVG 65
>gi|172060972|ref|YP_001808624.1| DNA ligase, NAD-dependent [Burkholderia ambifaria MC40-6]
gi|254781273|sp|B1YSH2|DNLJ_BURA4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|171993489|gb|ACB64408.1| DNA ligase, NAD-dependent [Burkholderia ambifaria MC40-6]
Length = 691
Score = 35.4 bits (80), Expect = 2.3, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 20/42 (47%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ L L+ P+L D P VG
Sbjct: 31 YYVLDQPDLPDAEYDRLFGELQQLETDHPDLVTPDSPTQRVG 72
>gi|308176651|ref|YP_003916057.1| DNA ligase [Arthrobacter arilaitensis Re117]
gi|307744114|emb|CBT75086.1| DNA ligase [Arthrobacter arilaitensis Re117]
Length = 767
Score = 35.4 bits (80), Expect = 2.3, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 28/55 (50%)
Query: 64 EYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV+ H+ YY+ D PL +D YD + L L+ +P L +D P VG
Sbjct: 33 DQLVEQIRAHRDAYYQNDAPLVSDVEYDALFHELQLLEATYPILAGQDSPTQEVG 87
>gi|167837047|ref|ZP_02463930.1| DNA ligase, NAD-dependent [Burkholderia thailandensis MSMB43]
Length = 691
Score = 35.4 bits (80), Expect = 2.3, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ L ++ + P+L D P VG
Sbjct: 31 YYVLDQPDLPDAEYDRLFVELQQIEAEHPDLVTPDSPTQRVG 72
>gi|307720805|ref|YP_003891945.1| DNA ligase, NAD-dependent [Sulfurimonas autotrophica DSM 16294]
gi|306978898|gb|ADN08933.1| DNA ligase, NAD-dependent [Sulfurimonas autotrophica DSM 16294]
Length = 650
Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD+P+ TD +YD++ + ++ +E PE ++ P VG
Sbjct: 20 YYVLDDPIMTDEVYDKLYKEVEQYEEAHPEDILKNSPTQRVG 61
>gi|312878358|ref|ZP_07738269.1| DNA ligase (NAD(+)) [Caldicellulosiruptor lactoaceticus 6A]
gi|311794859|gb|EFR11277.1| DNA ligase (NAD(+)) [Caldicellulosiruptor lactoaceticus 6A]
Length = 259
Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV + +H YY DNP +D YD + L L++Q+PE D P VG
Sbjct: 12 LVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYVFPDSPTQRVG 64
>gi|302871618|ref|YP_003840254.1| DNA ligase, NAD-dependent [Caldicellulosiruptor obsidiansis OB47]
gi|302574477|gb|ADL42268.1| DNA ligase, NAD-dependent [Caldicellulosiruptor obsidiansis OB47]
Length = 673
Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV + +H YY DNP +D YD + L L++Q+PE D P VG
Sbjct: 12 LVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYVLPDSPTQRVG 64
>gi|254514186|ref|ZP_05126247.1| DNA ligase, NAD-dependent [gamma proteobacterium NOR5-3]
gi|219676429|gb|EED32794.1| DNA ligase, NAD-dependent [gamma proteobacterium NOR5-3]
Length = 675
Score = 35.4 bits (80), Expect = 2.4, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 69 IALHHQ--KW---YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+AL Q +W YY LD P D YD L L+ + PEL D P VG
Sbjct: 12 VALREQLERWNHQYYVLDEPTVPDQDYDAALRELQKLETEHPELQDPSSPTQRVG 66
>gi|6179416|emb|CAB59902.1| DNA ligase [Campylobacter jejuni]
Length = 245
Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 60 MIEVEYLVKIALHHQ--KWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
M + EYL K+AL + YY D PL +D YD + L A +EQ + +D P +
Sbjct: 1 MTKKEYLEKVALAASWMRAYYEKDEPLASDEEYDALIRELRAFEEQNKDEISKDSPTQKI 60
Query: 118 G 118
Sbjct: 61 A 61
>gi|170703080|ref|ZP_02893902.1| DNA ligase, NAD-dependent [Burkholderia ambifaria IOP40-10]
gi|170132009|gb|EDT00515.1| DNA ligase, NAD-dependent [Burkholderia ambifaria IOP40-10]
Length = 691
Score = 35.4 bits (80), Expect = 2.4, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 20/42 (47%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ L L+ P+L D P VG
Sbjct: 31 YYVLDQPDLPDAEYDRLFGELQQLETDHPDLVTPDSPTQRVG 72
>gi|291454298|ref|ZP_06593688.1| NAD-dependent DNA ligase LigA [Streptomyces albus J1074]
gi|291357247|gb|EFE84149.1| NAD-dependent DNA ligase LigA [Streptomyces albus J1074]
Length = 736
Score = 35.4 bits (80), Expect = 2.4, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 64 EYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++L + H+ YY D P+ +D +DR L L+EQ+P L D P V
Sbjct: 27 KHLAEQVEEHRFRYYVNDQPVVSDAEFDRQLRALTQLEEQYPPLRTPDSPTQKVA 81
>gi|222529603|ref|YP_002573485.1| DNA ligase, NAD-dependent [Caldicellulosiruptor bescii DSM 6725]
gi|254781543|sp|B9MK54|DNLJ_ANATD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|222456450|gb|ACM60712.1| DNA ligase, NAD-dependent [Caldicellulosiruptor bescii DSM 6725]
Length = 673
Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV + +H YY DNP +D YD + L L++Q+PE D P VG
Sbjct: 9 IRELVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYVFPDSPTQRVG 64
>gi|219681449|ref|YP_002467834.1| DNA ligase (NAD+) [Buchnera aphidicola str. 5A (Acyrthosiphon
pisum)]
gi|257471124|ref|ZP_05635123.1| DNA ligase (NAD+) [Buchnera aphidicola str. LSR1 (Acyrthosiphon
pisum)]
gi|254781271|sp|B8D8M5|DNLJ_BUCA5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|219624292|gb|ACL30447.1| DNA ligase (NAD+) [Buchnera aphidicola str. 5A (Acyrthosiphon
pisum)]
Length = 675
Score = 35.4 bits (80), Expect = 2.4, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 31/57 (54%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++E L KI L ++ +Y+ L+ + +D YD + +L L+ + EL D P VG
Sbjct: 7 KIEKLRKILLKYEYFYHTLNQSIISDAEYDYLFRQLYELELKHKELIPSDSPTQKVG 63
>gi|329767007|ref|ZP_08258535.1| DNA ligase [Gemella haemolysans M341]
gi|328837732|gb|EGF87357.1| DNA ligase [Gemella haemolysans M341]
Length = 663
Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY DNP +D YD + ++L+ L+E PE E+ P VG
Sbjct: 22 YYVEDNPQISDTEYDTLYKQLEKLEENHPEYILENSPTQRVG 63
>gi|239982451|ref|ZP_04704975.1| NAD-dependent DNA ligase LigA [Streptomyces albus J1074]
Length = 728
Score = 35.4 bits (80), Expect = 2.5, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 64 EYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++L + H+ YY D P+ +D +DR L L+EQ+P L D P V
Sbjct: 19 KHLAEQVEEHRFRYYVNDQPVVSDAEFDRQLRALTQLEEQYPPLRTPDSPTQKVA 73
>gi|91225892|ref|ZP_01260861.1| DNA ligase [Vibrio alginolyticus 12G01]
gi|91189542|gb|EAS75818.1| DNA ligase [Vibrio alginolyticus 12G01]
Length = 670
Score = 35.4 bits (80), Expect = 2.5, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 67 VKIALH-HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+K +LH H YY DNP D YDR+ L ++ + P+L D P VG
Sbjct: 12 LKESLHYHAVRYYVEDNPEIPDAEYDRLMRELLDIEAENPDLITVDSPSQRVG 64
>gi|260889570|ref|ZP_05900833.1| DNA ligase, NAD-dependent [Leptotrichia hofstadii F0254]
gi|260860981|gb|EEX75481.1| DNA ligase, NAD-dependent [Leptotrichia hofstadii F0254]
Length = 702
Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF-----DEDHPWNTVG 118
+H YY D PL +D YD + L L++++PEL E P +G
Sbjct: 39 YHNNLYYNEDKPLISDMEYDALMRELKQLEQKYPELLKNEENGESSPTEKIG 90
>gi|153003607|ref|YP_001377932.1| DNA ligase, NAD-dependent [Anaeromyxobacter sp. Fw109-5]
gi|166215389|sp|A7H8A2|DNLJ_ANADF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|152027180|gb|ABS24948.1| DNA ligase, NAD-dependent [Anaeromyxobacter sp. Fw109-5]
Length = 699
Score = 35.4 bits (80), Expect = 2.5, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
YY LD P+ D YDR+ L ++ PEL D P V
Sbjct: 28 YYVLDRPVLADAEYDRLVRELAEIEAAHPELATSDSPTQRV 68
>gi|312877316|ref|ZP_07737282.1| DNA ligase, NAD-dependent [Caldicellulosiruptor lactoaceticus 6A]
gi|311795879|gb|EFR12242.1| DNA ligase, NAD-dependent [Caldicellulosiruptor lactoaceticus 6A]
Length = 673
Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV + +H YY DNP +D YD + L L++Q+PE D P VG
Sbjct: 12 LVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYVFPDSPTQRVG 64
>gi|312793814|ref|YP_004026737.1| DNA ligase, nad-dependent [Caldicellulosiruptor kristjanssonii
177R1B]
gi|312180954|gb|ADQ41124.1| DNA ligase, NAD-dependent [Caldicellulosiruptor kristjanssonii
177R1B]
Length = 673
Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV + +H YY DNP +D YD + L L++Q+PE D P VG
Sbjct: 12 LVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYVFPDSPTQRVG 64
>gi|237753058|ref|ZP_04583538.1| NAD-dependent DNA ligase LigA [Helicobacter winghamensis ATCC
BAA-430]
gi|229375325|gb|EEO25416.1| NAD-dependent DNA ligase LigA [Helicobacter winghamensis ATCC
BAA-430]
Length = 666
Score = 35.4 bits (80), Expect = 2.5, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 75 KWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
K YY LD+P+ +D YD + ++ A + Q P+ +D P VG
Sbjct: 18 KHYYVLDDPIASDEEYDLLYHKVLAYEAQNPQFIAQDSPTQRVG 61
>gi|71082725|ref|YP_265444.1| DNA ligase [Candidatus Pelagibacter ubique HTCC1062]
gi|123775550|sp|Q4FPL3|DNLJ_PELUB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|71061838|gb|AAZ20841.1| DNA ligase [Candidatus Pelagibacter ubique HTCC1062]
Length = 676
Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 61 IEVEYLVKIAL--HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+E+EYL KI L H K YY + P+ +D +D + + + L+ ++ L E P ++G
Sbjct: 6 LEIEYLKKIDLFQRHNKHYYDKNKPIVSDQEFDLLKKDIIDLERKYKFLKSEYSPTKSIG 65
Query: 119 Y 119
+
Sbjct: 66 F 66
>gi|225849186|ref|YP_002729350.1| DNA ligase, NAD-dependent [Sulfurihydrogenibium azorense Az-Fu1]
gi|254781434|sp|C1DW63|DNLJ_SULAA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|225644062|gb|ACN99112.1| DNA ligase, NAD-dependent [Sulfurihydrogenibium azorense Az-Fu1]
Length = 701
Score = 35.4 bits (80), Expect = 2.6, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 35/67 (52%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
+ S+ + +A +E L ++ H YY L P+ +D YD++ + L ++ ++P+L
Sbjct: 22 IKSIDRKKAESIIEDLREVIRFHDWRYYVLAQPVISDYEYDKLFKLLKDIESKYPDLITP 81
Query: 111 DHPWNTV 117
D P V
Sbjct: 82 DSPTQRV 88
>gi|89097084|ref|ZP_01169975.1| DNA ligase [Bacillus sp. NRRL B-14911]
gi|89088464|gb|EAR67574.1| DNA ligase [Bacillus sp. NRRL B-14911]
Length = 668
Score = 35.4 bits (80), Expect = 2.6, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ + L L+ + P+L D P VG
Sbjct: 24 YYVLDKPSVPDSEYDRLLKELMELENEHPQLKTADSPTQRVG 65
>gi|168483195|ref|ZP_02708147.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC1873-00]
gi|168492012|ref|ZP_02716155.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC0288-04]
gi|221231854|ref|YP_002511006.1| DNA ligase [Streptococcus pneumoniae ATCC 700669]
gi|225854613|ref|YP_002736125.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae JJA]
gi|254781427|sp|B8ZPV9|DNLJ_STRPJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254781431|sp|C1CEA4|DNLJ_STRZJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|172043461|gb|EDT51507.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC1873-00]
gi|183573785|gb|EDT94313.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC0288-04]
gi|220674314|emb|CAR68857.1| DNA ligase [Streptococcus pneumoniae ATCC 700669]
gi|225722247|gb|ACO18100.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae JJA]
gi|332201605|gb|EGJ15675.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae GA47368]
Length = 652
Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV + + YY DNP D YDR+ L L+ +PE D P + VG
Sbjct: 8 LVALLNRYATEYYTSDNPSVADSEYDRLYRELVELETAYPEQVLADSPTHRVG 60
>gi|312622179|ref|YP_004023792.1| DNA ligase, nad-dependent [Caldicellulosiruptor kronotskyensis
2002]
gi|312202646|gb|ADQ45973.1| DNA ligase, NAD-dependent [Caldicellulosiruptor kronotskyensis
2002]
Length = 673
Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV + +H YY DNP +D YD + L L++Q+PE D P VG
Sbjct: 12 LVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYVFPDSPTQRVG 64
>gi|255533202|ref|YP_003093574.1| DNA ligase, NAD-dependent [Pedobacter heparinus DSM 2366]
gi|255346186|gb|ACU05512.1| DNA ligase, NAD-dependent [Pedobacter heparinus DSM 2366]
Length = 670
Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 29/65 (44%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+S E ++ LVK H YY L P D +D+ E L L+ +PE D + P
Sbjct: 1 MSGSEVKTNMDALVKELNQHSYNYYVLAMPTIADYTFDKKLEELAQLELAYPEFADPNSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TRKVG 65
>gi|124024594|ref|YP_001018901.1| NAD-dependent DNA ligase LigA [Prochlorococcus marinus str. MIT
9303]
gi|166216228|sp|A2CDS6|DNLJ_PROM3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|123964880|gb|ABM79636.1| NAD-dependent DNA ligase [Prochlorococcus marinus str. MIT 9303]
Length = 696
Score = 35.4 bits (80), Expect = 2.6, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 52 TSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
TS + E E+ L+ A H YY LD P D +YDR+ L L+ + L D
Sbjct: 4 TSRTPPERAAELRQLLNQAAHS---YYVLDTPTMEDAVYDRLYRELLDLEVKDSSLLTPD 60
Query: 112 HPWNTVG 118
P +G
Sbjct: 61 SPTQRIG 67
>gi|307326508|ref|ZP_07605703.1| DNA ligase, NAD-dependent [Streptomyces violaceusniger Tu 4113]
gi|306887916|gb|EFN18907.1| DNA ligase, NAD-dependent [Streptomyces violaceusniger Tu 4113]
Length = 732
Score = 35.4 bits (80), Expect = 2.6, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H+ YY D P+ +D +D++ L+AL+E+ P L D P V
Sbjct: 27 HRFRYYVKDAPVVSDAEFDKLMRELEALEEETPALRTPDSPTQKVA 72
>gi|88803633|ref|ZP_01119157.1| putative DNA ligase [Polaribacter irgensii 23-P]
gi|88780366|gb|EAR11547.1| putative DNA ligase [Polaribacter irgensii 23-P]
Length = 665
Score = 35.4 bits (80), Expect = 2.6, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY LDN + +D +D ++L+ L+++ P LFD + P VG
Sbjct: 17 HNYNYYVLDNGMISDFDFDVKLKKLEQLEKENPLLFDANSPTQRVG 62
>gi|254440003|ref|ZP_05053497.1| DNA ligase, NAD-dependent [Octadecabacter antarcticus 307]
gi|198255449|gb|EDY79763.1| DNA ligase, NAD-dependent [Octadecabacter antarcticus 307]
Length = 706
Score = 35.4 bits (80), Expect = 2.7, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 33/74 (44%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
+ + +L+K EA E+ L + Y++ D P D YD + R ++ +F
Sbjct: 1 MSATTSIENLTKDEAAQELARLSALLAQANAEYHQADAPRIPDADYDALKLRNAMIEARF 60
Query: 105 PELFDEDHPWNTVG 118
+L D P TVG
Sbjct: 61 SDLKRRDSPSETVG 74
>gi|67458584|ref|YP_246208.1| NAD-dependent DNA ligase LigA [Rickettsia felis URRWXCal2]
gi|67004117|gb|AAY61043.1| DNA ligase, NAD-dependent [Rickettsia felis URRWXCal2]
Length = 706
Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 68 KIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
KIA ++ +Y DNPL +D YD++ L+++FP L E+ P +G
Sbjct: 39 KIAAYNHAYYIE-DNPLVSDSEYDQLFNTNLKLEQKFPHLVLENSPSKKIG 88
>gi|312127350|ref|YP_003992224.1| DNA ligase, nad-dependent [Caldicellulosiruptor hydrothermalis 108]
gi|311777369|gb|ADQ06855.1| DNA ligase, NAD-dependent [Caldicellulosiruptor hydrothermalis 108]
Length = 673
Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV + +H YY DNP +D YD + L L++Q+PE D P VG
Sbjct: 9 IRELVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYVFPDSPTQRVG 64
>gi|215918993|ref|NP_819574.2| NAD-dependent DNA ligase [Coxiella burnetii RSA 493]
gi|218512010|sp|Q83DZ6|DNLJ_COXBU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|206583878|gb|AAO90088.2| NAD-dependent DNA ligase [Coxiella burnetii RSA 493]
Length = 673
Score = 35.4 bits (80), Expect = 2.7, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY L P D +YD + L+ L++++PE P VG
Sbjct: 24 HNYRYYVLSQPTIPDSVYDELFHELEKLEKKYPETITPSSPTQRVG 69
>gi|183603490|ref|ZP_02717204.2| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC3059-06]
gi|183576581|gb|EDT97109.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC3059-06]
Length = 648
Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV + + YY DNP D YDR+ L L+ +PE D P + VG
Sbjct: 4 LVALLNRYATEYYTSDNPSVADSEYDRLYRELVELETAYPEQVLADSPTHRVG 56
>gi|269968476|ref|ZP_06182487.1| DNA ligase [Vibrio alginolyticus 40B]
gi|269826910|gb|EEZ81233.1| DNA ligase [Vibrio alginolyticus 40B]
Length = 690
Score = 35.4 bits (80), Expect = 2.7, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 67 VKIALH-HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+K +LH H YY DNP D YDR+ L ++ + P+L D P VG
Sbjct: 32 LKESLHYHAVRYYVEDNPEIPDAEYDRLMRELLDIEAENPDLITVDSPSQRVG 84
>gi|189485424|ref|YP_001956365.1| DNA ligase (NAD+) [uncultured Termite group 1 bacterium phylotype
Rs-D17]
gi|254781446|sp|B1H072|DNLJ_UNCTG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|170287383|dbj|BAG13904.1| DNA ligase (NAD+) [uncultured Termite group 1 bacterium phylotype
Rs-D17]
Length = 674
Score = 35.4 bits (80), Expect = 2.8, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 29/57 (50%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
G ++YL K + H YY +NP +D YD +++ L+ ++++ P D P
Sbjct: 4 GNIQNRIDYLRKELIRHNGLYYESNNPEISDSEYDNLAKELEQIEKENPLFALPDSP 60
>gi|170727191|ref|YP_001761217.1| DNA ligase, NAD-dependent [Shewanella woodyi ATCC 51908]
gi|254781418|sp|B1KJT5|DNLJ_SHEWM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|169812538|gb|ACA87122.1| DNA ligase, NAD-dependent [Shewanella woodyi ATCC 51908]
Length = 670
Score = 35.4 bits (80), Expect = 2.8, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 28/60 (46%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
A+ E++ L + H YY D+P D YDR+ RL L+ + P L P VG
Sbjct: 3 AIEEIKQLTETINEHNHSYYVEDSPSVPDAEYDRLINRLKQLEGENPHLCLPTSPTQRVG 62
>gi|134034096|sp|Q4UN15|DNLJ_RICFE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
Length = 689
Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 68 KIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
KIA ++ +Y DNPL +D YD++ L+++FP L E+ P +G
Sbjct: 22 KIAAYNHAYYIE-DNPLVSDSEYDQLFNTNLKLEQKFPHLVLENSPSKKIG 71
>gi|238026897|ref|YP_002911128.1| DNA ligase, NAD-dependent [Burkholderia glumae BGR1]
gi|237876091|gb|ACR28424.1| DNA ligase, NAD-dependent [Burkholderia glumae BGR1]
Length = 747
Score = 35.4 bits (80), Expect = 2.8, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ L ++ + P+ D P VG
Sbjct: 32 YYVLDQPELLDAEYDRLFRELQQIEAEHPDFITPDSPTQRVG 73
>gi|53719773|ref|YP_108759.1| DNA ligase [Burkholderia pseudomallei K96243]
gi|167816389|ref|ZP_02448069.1| DNA ligase [Burkholderia pseudomallei 91]
gi|81379503|sp|Q63T07|DNLJ_BURPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|52210187|emb|CAH36166.1| DNA ligase [Burkholderia pseudomallei K96243]
Length = 691
Score = 35.4 bits (80), Expect = 2.8, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ L ++ + P+L D P VG
Sbjct: 31 YYVLDQPDLPDAEYDRLFVELQRIEAEHPDLVTPDSPTQRVG 72
>gi|161831535|ref|YP_001596473.1| DNA ligase, NAD-dependent [Coxiella burnetii RSA 331]
gi|190359249|sp|A9NC33|DNLJ_COXBR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|161763402|gb|ABX79044.1| DNA ligase, NAD-dependent [Coxiella burnetii RSA 331]
Length = 670
Score = 35.4 bits (80), Expect = 2.9, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY L P D +YD + L+ L++++PE P VG
Sbjct: 21 HNYRYYVLSQPTIPDSVYDELFHELEKLEKKYPETITPSSPTQRVG 66
>gi|262394922|ref|YP_003286776.1| DNA ligase [Vibrio sp. Ex25]
gi|262338516|gb|ACY52311.1| DNA ligase [Vibrio sp. Ex25]
Length = 690
Score = 35.4 bits (80), Expect = 2.9, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 67 VKIALH-HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+K +LH H YY DNP D YDR+ L ++ + P+L D P VG
Sbjct: 32 LKESLHYHAVRYYVEDNPEIPDAEYDRLMRELLDIEAENPDLITVDSPSQRVG 84
>gi|76810783|ref|YP_333980.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1710b]
gi|167720173|ref|ZP_02403409.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei DM98]
gi|167911510|ref|ZP_02498601.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 112]
gi|254189298|ref|ZP_04895809.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei Pasteur 52237]
gi|254259109|ref|ZP_04950163.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1710a]
gi|254297202|ref|ZP_04964655.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 406e]
gi|123771899|sp|Q3JR23|DNLJ_BURP1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|76580236|gb|ABA49711.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1710b]
gi|157807762|gb|EDO84932.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 406e]
gi|157936977|gb|EDO92647.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei Pasteur 52237]
gi|254217798|gb|EET07182.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1710a]
Length = 691
Score = 35.4 bits (80), Expect = 2.9, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ L ++ + P+L D P VG
Sbjct: 31 YYVLDQPDLPDAEYDRLFVELQRIEAEHPDLVTPDSPTQRVG 72
>gi|126453906|ref|YP_001066758.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1106a]
gi|134277579|ref|ZP_01764294.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 305]
gi|167739178|ref|ZP_02411952.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 14]
gi|167824768|ref|ZP_02456239.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 9]
gi|167846299|ref|ZP_02471807.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei B7210]
gi|167894881|ref|ZP_02482283.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 7894]
gi|167903270|ref|ZP_02490475.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei NCTC 13177]
gi|167919520|ref|ZP_02506611.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei BCC215]
gi|217421846|ref|ZP_03453350.1| DNA ligase (NAD(+)) [Burkholderia pseudomallei 576]
gi|226198948|ref|ZP_03794511.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei Pakistan 9]
gi|237812814|ref|YP_002897265.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei MSHR346]
gi|242317106|ref|ZP_04816122.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1106b]
gi|254179316|ref|ZP_04885915.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1655]
gi|254198094|ref|ZP_04904516.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei S13]
gi|166215566|sp|A3NWN7|DNLJ_BURP0 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|126227548|gb|ABN91088.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1106a]
gi|134251229|gb|EBA51308.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 305]
gi|169654835|gb|EDS87528.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei S13]
gi|184209856|gb|EDU06899.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1655]
gi|217395588|gb|EEC35606.1| DNA ligase (NAD(+)) [Burkholderia pseudomallei 576]
gi|225929048|gb|EEH25072.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei Pakistan 9]
gi|237506455|gb|ACQ98773.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei MSHR346]
gi|242140345|gb|EES26747.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1106b]
Length = 691
Score = 35.4 bits (80), Expect = 2.9, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ L ++ + P+L D P VG
Sbjct: 31 YYVLDQPDLPDAEYDRLFVELQRIEAEHPDLVTPDSPTQRVG 72
>gi|259047691|ref|ZP_05738092.1| DNA ligase, NAD-dependent [Granulicatella adiacens ATCC 49175]
gi|259035882|gb|EEW37137.1| DNA ligase, NAD-dependent [Granulicatella adiacens ATCC 49175]
Length = 668
Score = 35.4 bits (80), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY D P TD YD+ L AL+++ PE D P VG
Sbjct: 25 YYVEDKPTATDAEYDKAYHELLALEKEHPEFVTADSPTQRVG 66
>gi|126441747|ref|YP_001059474.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 668]
gi|166215567|sp|A3NAV3|DNLJ_BURP6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|126221240|gb|ABN84746.1| DNA ligase (NAD(+)) [Burkholderia pseudomallei 668]
Length = 691
Score = 35.4 bits (80), Expect = 3.0, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ L ++ + P+L D P VG
Sbjct: 31 YYVLDQPDLPDAEYDRLFVELQRIEAEHPDLVTPDSPTQRVG 72
>gi|53723744|ref|YP_103200.1| DNA ligase, NAD-dependent [Burkholderia mallei ATCC 23344]
gi|67639492|ref|ZP_00438344.1| DNA ligase, NAD-dependent [Burkholderia mallei GB8 horse 4]
gi|121600643|ref|YP_993378.1| DNA ligase, NAD-dependent [Burkholderia mallei SAVP1]
gi|124385135|ref|YP_001029185.1| DNA ligase, NAD-dependent [Burkholderia mallei NCTC 10229]
gi|126450807|ref|YP_001080885.1| DNA ligase, NAD-dependent [Burkholderia mallei NCTC 10247]
gi|167004074|ref|ZP_02269848.1| DNA ligase, NAD-dependent [Burkholderia mallei PRL-20]
gi|254178005|ref|ZP_04884660.1| DNA ligase, NAD-dependent [Burkholderia mallei ATCC 10399]
gi|254206491|ref|ZP_04912843.1| DNA ligase, NAD-dependent [Burkholderia mallei JHU]
gi|254358100|ref|ZP_04974373.1| DNA ligase, NAD-dependent [Burkholderia mallei 2002721280]
gi|81604820|sp|Q62JB9|DNLJ_BURMA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|166215563|sp|A3MKU9|DNLJ_BURM7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|166215564|sp|A2SB66|DNLJ_BURM9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|166215565|sp|A1V575|DNLJ_BURMS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|52427167|gb|AAU47760.1| DNA ligase, NAD-dependent [Burkholderia mallei ATCC 23344]
gi|121229453|gb|ABM51971.1| DNA ligase, NAD-dependent [Burkholderia mallei SAVP1]
gi|124293155|gb|ABN02424.1| DNA ligase (NAD(+)) [Burkholderia mallei NCTC 10229]
gi|126243677|gb|ABO06770.1| DNA ligase (NAD(+)) [Burkholderia mallei NCTC 10247]
gi|147753934|gb|EDK60999.1| DNA ligase, NAD-dependent [Burkholderia mallei JHU]
gi|148027227|gb|EDK85248.1| DNA ligase, NAD-dependent [Burkholderia mallei 2002721280]
gi|160699044|gb|EDP89014.1| DNA ligase, NAD-dependent [Burkholderia mallei ATCC 10399]
gi|238520039|gb|EEP83503.1| DNA ligase, NAD-dependent [Burkholderia mallei GB8 horse 4]
gi|243060513|gb|EES42699.1| DNA ligase, NAD-dependent [Burkholderia mallei PRL-20]
Length = 691
Score = 35.4 bits (80), Expect = 3.0, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ L ++ + P+L D P VG
Sbjct: 31 YYVLDQPDLPDAEYDRLFVELQRIEAEHPDLVTPDSPTQRVG 72
>gi|322385709|ref|ZP_08059353.1| NAD-dependent DNA ligase LigA [Streptococcus cristatus ATCC 51100]
gi|321270447|gb|EFX53363.1| NAD-dependent DNA ligase LigA [Streptococcus cristatus ATCC 51100]
Length = 652
Score = 35.0 bits (79), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LVK+ + YY D P +D YDR+ L L+E++P D P + VG
Sbjct: 8 LVKLLNRYAHEYYTADRPSVSDSEYDRLYRELVELEEKYPTDILPDSPTHRVG 60
>gi|240142614|ref|YP_002967127.1| DNA ligase, NAD(+)-dependent [Methylobacterium extorquens AM1]
gi|240012561|gb|ACS43786.1| DNA ligase, NAD(+)-dependent [Methylobacterium extorquens AM1]
Length = 712
Score = 35.0 bits (79), Expect = 3.1, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 30/72 (41%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
+A V LS +A IE L H + Y+ D P+ TD YD + R ++ P
Sbjct: 8 RAVPVAELSNEDARIEHAALASEIAEHDERYHGQDAPIVTDAEYDALRRRAAEIEAAHPA 67
Query: 107 LFDEDHPWNTVG 118
L E VG
Sbjct: 68 LAAESEVAKKVG 79
>gi|209522379|ref|ZP_03270993.1| DNA ligase, NAD-dependent [Burkholderia sp. H160]
gi|209497185|gb|EDZ97426.1| DNA ligase, NAD-dependent [Burkholderia sp. H160]
Length = 688
Score = 35.0 bits (79), Expect = 3.1, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YD++ + L+ ++ + P+L D P VG
Sbjct: 32 YYVLDQPDLPDAEYDKLFKELERIEAEHPDLIVPDSPTQRVG 73
>gi|255009394|ref|ZP_05281520.1| putative DNA ligase [Bacteroides fragilis 3_1_12]
gi|313147153|ref|ZP_07809346.1| DNA ligase [Bacteroides fragilis 3_1_12]
gi|313135920|gb|EFR53280.1| DNA ligase [Bacteroides fragilis 3_1_12]
Length = 665
Score = 35.0 bits (79), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 67 VKIALHHQKW-YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++I LH + YY L+ P +D +D + L L+++ PE DE+ P VG
Sbjct: 10 LRIQLHQHNYNYYVLNAPEISDKEFDDLMRELQTLEQEHPEYKDENSPTMRVG 62
>gi|251788438|ref|YP_003003159.1| NAD-dependent DNA ligase LigA [Dickeya zeae Ech1591]
gi|247537059|gb|ACT05680.1| DNA ligase, NAD-dependent [Dickeya zeae Ech1591]
Length = 682
Score = 35.0 bits (79), Expect = 3.1, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 11/81 (13%)
Query: 38 KRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERL 97
KRA + +D A++ + E+ L++ HH Y+ D+P D YD + L
Sbjct: 4 KRANQQNVDTARR--------RIKELRILIR---HHDIKYHSEDDPEILDSEYDLLKREL 52
Query: 98 DALQEQFPELFDEDHPWNTVG 118
L+ Q P L D P VG
Sbjct: 53 SELEIQHPFLVTSDSPTQRVG 73
>gi|254796855|ref|YP_003081692.1| DNA ligase, NAD-dependent [Neorickettsia risticii str. Illinois]
gi|254590064|gb|ACT69426.1| DNA ligase, NAD-dependent [Neorickettsia risticii str. Illinois]
Length = 670
Score = 35.0 bits (79), Expect = 3.1, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
+A E++ L + L H K YY+ D+P TD YD + R L E P L
Sbjct: 2 KAKKEIQELYEKLLRHNKKYYQDDSPEITDAEYDSIKGRYLKLLEANPSL 51
>gi|227485017|ref|ZP_03915333.1| DNA ligase (NAD(+)) [Anaerococcus lactolyticus ATCC 51172]
gi|227237014|gb|EEI87029.1| DNA ligase (NAD(+)) [Anaerococcus lactolyticus ATCC 51172]
Length = 667
Score = 35.0 bits (79), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD PL +DG YD++ +L LQ+ E+ P N VG
Sbjct: 21 YYTLDKPLVSDGEYDKLYNQLIKLQKNLA-YVPENSPTNRVG 61
>gi|116493340|ref|YP_805075.1| NAD-dependent DNA ligase [Pediococcus pentosaceus ATCC 25745]
gi|122265196|sp|Q03DT9|DNLJ_PEDPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|116103490|gb|ABJ68633.1| NAD-dependent DNA ligase [Pediococcus pentosaceus ATCC 25745]
Length = 675
Score = 35.0 bits (79), Expect = 3.1, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 31/70 (44%)
Query: 49 KKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF 108
KK+ + EA + L +I K YY D P D YD L AL+E FPE+
Sbjct: 5 KKLEEMQVEEASKLAQNLREILDRWSKLYYTKDAPEVEDYEYDEKYADLVALEEAFPEII 64
Query: 109 DEDHPWNTVG 118
+D VG
Sbjct: 65 TQDSITQRVG 74
>gi|327475237|gb|AEA77213.1| DNA ligase [Bacillus aquimaris]
Length = 668
Score = 35.0 bits (79), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
Y+ LD P D YD++ L L++QFP+L D P VG
Sbjct: 24 YHVLDKPSVPDSEYDQLLRELIELEDQFPDLKTSDSPSERVG 65
>gi|325002847|ref|ZP_08123959.1| NAD-dependent DNA ligase LigA [Pseudonocardia sp. P1]
Length = 615
Score = 35.0 bits (79), Expect = 3.2, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HQ YY LD P+ +DG +D + L L++ P L P VG
Sbjct: 23 HQFRYYVLDAPVVSDGQFDELWHELLGLEDAHPGLATPQSPTQKVG 68
>gi|289649545|ref|ZP_06480888.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. aesculi
str. 2250]
Length = 787
Score = 35.0 bits (79), Expect = 3.3, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 22/46 (47%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H Y+ LD P D YDR+ L AL+ + P L D P VG
Sbjct: 18 HNYRYHVLDEPSIPDVEYDRLFHELKALEVENPHLVTPDSPTQRVG 63
>gi|91762853|ref|ZP_01264818.1| DNA ligase [Candidatus Pelagibacter ubique HTCC1002]
gi|91718655|gb|EAS85305.1| DNA ligase [Candidatus Pelagibacter ubique HTCC1002]
Length = 676
Score = 35.0 bits (79), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 61 IEVEYLVKIAL--HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+E+EYL KI L H K YY + P+ +D +D + + + L+ ++ L E P ++G
Sbjct: 6 LEIEYLKKIDLFQTHNKHYYDKNKPIVSDQEFDLLKKDIIDLESKYKFLKSEYSPTKSIG 65
Query: 119 Y 119
+
Sbjct: 66 F 66
>gi|329116783|ref|ZP_08245500.1| DNA ligase (NAD+) [Streptococcus parauberis NCFD 2020]
gi|326907188|gb|EGE54102.1| DNA ligase (NAD+) [Streptococcus parauberis NCFD 2020]
Length = 654
Score = 35.0 bits (79), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY D+P +D YDR+ L L+E++PE +D P VG
Sbjct: 19 YYTNDSPSVSDQDYDRLYHELVQLEEEYPEYALKDSPTQAVG 60
>gi|315161924|gb|EFU05941.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0645]
Length = 676
Score = 35.0 bits (79), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY D P D +YDR+ + L ++ +FP+L D P VG
Sbjct: 29 YYVKDQPSVEDYVYDRLYKELVDIETEFPDLITPDSPTQRVG 70
>gi|222086432|ref|YP_002544966.1| DNA ligase, NAD-dependent [Agrobacterium radiobacter K84]
gi|254781247|sp|B9JH39|DNLJ_AGRRK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|221723880|gb|ACM27036.1| DNA ligase, NAD-dependent [Agrobacterium radiobacter K84]
Length = 717
Score = 35.0 bits (79), Expect = 3.4, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
Y+ D P +D YD + R DA++ +FP L D P VG
Sbjct: 34 YHGNDAPEISDAEYDALKRRNDAIEARFPALVRADSPSRRVG 75
>gi|307289585|ref|ZP_07569529.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0109]
gi|306499399|gb|EFM68772.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0109]
gi|315164584|gb|EFU08601.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX1302]
Length = 676
Score = 35.0 bits (79), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY D P D +YDR+ + L ++ +FP+L D P VG
Sbjct: 29 YYVKDQPSVEDYVYDRLYKELVDIETEFPDLITPDSPTQRVG 70
>gi|241764431|ref|ZP_04762455.1| DNA ligase, NAD-dependent [Acidovorax delafieldii 2AN]
gi|241366173|gb|EER60750.1| DNA ligase, NAD-dependent [Acidovorax delafieldii 2AN]
Length = 697
Score = 35.0 bits (79), Expect = 3.5, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
HQ YY +D P D YD V L AL+ P+L D P V
Sbjct: 28 HQ--YYVMDEPTVPDAEYDSVFRELQALETAHPDLITPDSPTQRV 70
>gi|330995784|ref|ZP_08319681.1| DNA ligase [Paraprevotella xylaniphila YIT 11841]
gi|329574514|gb|EGG56079.1| DNA ligase [Paraprevotella xylaniphila YIT 11841]
Length = 669
Score = 35.0 bits (79), Expect = 3.5, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 27/61 (44%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E ++E L H YY L+ P +D +DR+ L L+ PE D D P V
Sbjct: 4 EVKEQIERLRSELHRHNYNYYVLNAPEISDQEFDRMMRELQDLEAAHPEFDDPDSPTRRV 63
Query: 118 G 118
G
Sbjct: 64 G 64
>gi|153956079|ref|YP_001396844.1| LigA1 [Clostridium kluyveri DSM 555]
gi|219856414|ref|YP_002473536.1| hypothetical protein CKR_3071 [Clostridium kluyveri NBRC 12016]
gi|190359246|sp|A5N2X7|DNLJ_CLOK5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254781297|sp|B9DWM9|DNLJ_CLOK1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|146348937|gb|EDK35473.1| LigA1 [Clostridium kluyveri DSM 555]
gi|219570138|dbj|BAH08122.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 663
Score = 35.0 bits (79), Expect = 3.5, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 27/56 (48%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L KI +H YY D+P TD YD++ L L+ PE + P VG
Sbjct: 7 IDELRKIIEYHNDKYYNQDDPEITDYEYDKLYVELRNLENSHPEYKIQSSPTQKVG 62
>gi|322411466|gb|EFY02374.1| NAD-dependent DNA ligase LigA [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
Length = 652
Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ YY D+P +D YD++ L L+ Q+PE +D P VG
Sbjct: 14 RYRQEYYTNDSPSVSDSEYDKLYRELVELENQYPEHVLQDSPTQNVG 60
>gi|322387936|ref|ZP_08061543.1| NAD-dependent DNA ligase LigA [Streptococcus infantis ATCC 700779]
gi|321141209|gb|EFX36707.1| NAD-dependent DNA ligase LigA [Streptococcus infantis ATCC 700779]
Length = 652
Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV++ + YY DNP +D YDR+ L L+ +PE D P + VG
Sbjct: 8 LVELLNRYATEYYTSDNPSVSDSEYDRLYRELVELEIAYPEQVLPDSPTHRVG 60
>gi|189219712|ref|YP_001940353.1| NAD-dependent DNA ligase [Methylacidiphilum infernorum V4]
gi|254781365|sp|B3DWU2|DNLJ_METI4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|189186570|gb|ACD83755.1| NAD-dependent DNA ligase [Methylacidiphilum infernorum V4]
Length = 689
Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
KA + SL E + LVK+ + YY +PL +D YD + L+ L++ PE
Sbjct: 18 KAPSLDSLGYEEIKKRHDELVKLIRKYDYAYYVEAHPLVSDQEYDNLYHELETLEKLHPE 77
Query: 107 LFDEDHPWNTVG 118
L D P +G
Sbjct: 78 LITPDSPTQRIG 89
>gi|312898543|ref|ZP_07757933.1| DNA ligase, NAD-dependent [Megasphaera micronuciformis F0359]
gi|310620462|gb|EFQ04032.1| DNA ligase, NAD-dependent [Megasphaera micronuciformis F0359]
Length = 672
Score = 35.0 bits (79), Expect = 3.6, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
YY LD P TD YD + L+ ++ PE D P VG+
Sbjct: 24 YYTLDKPTITDYDYDMLYRELETIEGAHPEWVTADSPTQRVGH 66
>gi|255660255|ref|ZP_05405664.1| DNA ligase, NAD-dependent [Mycoplasma genitalium G37]
Length = 658
Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+ ++++ LV + ++ YY L PL D YD + + L L++ P+L D P V
Sbjct: 2 DVKLKIQQLVNLIKNYDYHYYVLSEPLIDDFEYDMLYKSLQQLEKDHPDLIQIDSPTQRV 61
Query: 118 G 118
G
Sbjct: 62 G 62
>gi|91204173|emb|CAJ71826.1| strongly similar to DNA ligase [Candidatus Kuenenia
stuttgartiensis]
Length = 674
Score = 35.0 bits (79), Expect = 3.6, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 27/57 (47%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++E L I +H YY +NP +D YD++ L L+ PEL D P V
Sbjct: 8 KIEQLRCIIRYHDYKYYVENNPEISDYEYDQLLRELQNLESAHPELITPDSPTQRVA 64
>gi|167041226|gb|ABZ05983.1| putative NAD-dependent DNA ligase adenylation domain protein
[uncultured marine microorganism HF4000_001N02]
Length = 727
Score = 35.0 bits (79), Expect = 3.6, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
+ +G +E L ++ HH YY P+ TD YD + + L L P+L
Sbjct: 6 IEEGAQSARIEELAQLLAHHSDLYYNEAAPVITDAEYDLLFDELKRLDPTHPQL 59
>gi|12045108|ref|NP_072919.1| DNA ligase, NAD-dependent [Mycoplasma genitalium G37]
gi|1352291|sp|P47496|DNLJ_MYCGE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|3844852|gb|AAC71474.1| DNA ligase, NAD-dependent [Mycoplasma genitalium G37]
gi|166078824|gb|ABY79442.1| DNA ligase, NAD-dependent [synthetic Mycoplasma genitalium
JCVI-1.0]
Length = 659
Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+ ++++ LV + ++ YY L PL D YD + + L L++ P+L D P V
Sbjct: 3 DVKLKIQQLVNLIKNYDYHYYVLSEPLIDDFEYDMLYKSLQQLEKDHPDLIQIDSPTQRV 62
Query: 118 G 118
G
Sbjct: 63 G 63
>gi|319956399|ref|YP_004167662.1| DNA ligase, nad-dependent [Nitratifractor salsuginis DSM 16511]
gi|319418803|gb|ADV45913.1| DNA ligase, NAD-dependent [Nitratifractor salsuginis DSM 16511]
Length = 657
Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY DNP TD +YDR+ ++A ++ P+ D P VG
Sbjct: 22 YYVEDNPEVTDEVYDRLYREVEAYEKAHPDEIDPTSPTQRVG 63
>gi|188584367|ref|YP_001927812.1| DNA ligase, NAD-dependent [Methylobacterium populi BJ001]
gi|254781367|sp|B1Z9P1|DNLJ_METPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|179347865|gb|ACB83277.1| DNA ligase, NAD-dependent [Methylobacterium populi BJ001]
Length = 814
Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 27/57 (47%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
V SLS+ A L + YY D P TD YD + + L+A++ +FP L
Sbjct: 10 VESLSEDAAQARHAELSRAIERANHLYYNEDAPELTDAEYDALRQELEAIEARFPAL 66
>gi|83312957|ref|YP_423221.1| NAD-dependent DNA ligase [Magnetospirillum magneticum AMB-1]
gi|123726860|sp|Q2W0G3|DNLJ_MAGMM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|82947798|dbj|BAE52662.1| NAD-dependent DNA ligase [Magnetospirillum magneticum AMB-1]
Length = 698
Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
V +L+ EA IE LV+ + Y+ D P D +YD RL ++ +FPEL
Sbjct: 4 VEALTPFEARIEHAELVETIARWDEAYHAKDAPEVPDDVYDGAKRRLARIEGRFPEL 60
>gi|332686164|ref|YP_004455938.1| DNA ligase [Melissococcus plutonius ATCC 35311]
gi|332370173|dbj|BAK21129.1| DNA ligase [Melissococcus plutonius ATCC 35311]
Length = 678
Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY D P D +YDR+ + L ++ +P+L D P VG
Sbjct: 30 YYVQDKPSVEDYVYDRLYKELSEIETAYPDLITSDSPTQRVG 71
>gi|205355436|ref|ZP_03222207.1| DNA ligase [Campylobacter jejuni subsp. jejuni CG8421]
gi|205346670|gb|EDZ33302.1| DNA ligase [Campylobacter jejuni subsp. jejuni CG8421]
Length = 647
Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 64 EYLVKIALHH--QKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
EYL K+AL + + YY D PL +D YD + L A +EQ + +D P +
Sbjct: 5 EYLEKVALANLWMRAYYEKDEPLASDEEYDALIRELRAFEEQNKDEISKDSPTQKIA 61
>gi|254229733|ref|ZP_04923142.1| DNA ligase [Vibrio sp. Ex25]
gi|151937778|gb|EDN56627.1| DNA ligase [Vibrio sp. Ex25]
Length = 287
Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 67 VKIALH-HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+K +LH H YY DNP D YDR+ L ++ + P+L D P VG
Sbjct: 32 LKESLHYHAVRYYVEDNPEIPDAEYDRLMRELLDIEAENPDLITVDSPSQRVG 84
>gi|268319976|ref|YP_003293632.1| DNA ligase, NAD-dependent [Lactobacillus johnsonii FI9785]
gi|262398351|emb|CAX67365.1| DNA ligase, NAD-dependent [Lactobacillus johnsonii FI9785]
Length = 668
Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 75 KW---YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
KW YY D P+ D +YD+ + L L+++FP+L D VG
Sbjct: 22 KWADDYYAKDAPVVEDAVYDKTYQELVELEQKFPDLVTADSITQRVG 68
>gi|193213809|ref|YP_001995008.1| NAD-dependentDNA ligase [Chloroherpeton thalassium ATCC 35110]
gi|254781288|sp|B3QSH0|DNLJ_CHLT3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|193087286|gb|ACF12561.1| DNA ligase, NAD-dependent [Chloroherpeton thalassium ATCC 35110]
Length = 684
Score = 35.0 bits (79), Expect = 3.8, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++K EA ++ L + H YY L P +D +D + L L+ ++P+L D P
Sbjct: 1 MNKSEAEAKIRALRREINEHNYNYYNLAKPKISDYDFDALLRTLAELEAKYPDLVTPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SQRVG 65
>gi|157414868|ref|YP_001482124.1| NAD-dependent DNA ligase LigA [Campylobacter jejuni subsp. jejuni
81116]
gi|190359240|sp|A8FL10|DNLJ_CAMJ8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|157385832|gb|ABV52147.1| DNA ligase [Campylobacter jejuni subsp. jejuni 81116]
gi|315931784|gb|EFV10739.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni 327]
Length = 647
Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 64 EYLVKIALHH--QKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
EYL K+AL + + YY D PL +D YD + L A +EQ + +D P +
Sbjct: 5 EYLEKVALANLWMRAYYEKDEPLASDEEYDALIRELRAFEEQNKDEISKDSPTQKIA 61
>gi|144899097|emb|CAM75961.1| NAD-dependent DNA ligase [Magnetospirillum gryphiswaldense MSR-1]
Length = 693
Score = 35.0 bits (79), Expect = 3.8, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
++ +L+ EA IE L + + Y++ D P D YD RL A++ +FPEL
Sbjct: 4 EIDALTPFEARIEASALREKLIRWDLAYHQADAPEVDDATYDAAKLRLLAIEARFPEL 61
>gi|163784741|ref|ZP_02179548.1| DNA ligase (NAD dependent) [Hydrogenivirga sp. 128-5-R1-1]
gi|159879989|gb|EDP73686.1| DNA ligase (NAD dependent) [Hydrogenivirga sp. 128-5-R1-1]
Length = 414
Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
L ++ +H YY L NP+ +D YD++ L ++++++PEL D P V
Sbjct: 38 LREVIKYHDWKYYVLANPVISDYEYDKLFHLLVSIEKKYPELITADSPTQRV 89
>gi|325479535|gb|EGC82631.1| DNA ligase (NAD+) [Anaerococcus prevotii ACS-065-V-Col13]
Length = 669
Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD PL +DG YD + +RL L+++ +E+ P VG
Sbjct: 21 YYTLDEPLVSDGEYDEIYDRLVKLEDK-SGYINENSPTQKVG 61
>gi|302336117|ref|YP_003801324.1| DNA ligase, NAD-dependent [Olsenella uli DSM 7084]
gi|301319957|gb|ADK68444.1| DNA ligase, NAD-dependent [Olsenella uli DSM 7084]
Length = 747
Score = 35.0 bits (79), Expect = 3.8, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD+P TD +DR+ L AL+ PEL + +G
Sbjct: 62 YYALDDPEMTDAEFDRLLVELQALESAHPELVSPESYTQRIG 103
>gi|227889453|ref|ZP_04007258.1| NAD-dependent DNA ligase [Lactobacillus johnsonii ATCC 33200]
gi|227849931|gb|EEJ60017.1| NAD-dependent DNA ligase [Lactobacillus johnsonii ATCC 33200]
Length = 668
Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 75 KW---YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
KW YY D P+ D +YD+ + L L+++FP+L D VG
Sbjct: 22 KWADDYYAKDAPVVEDAVYDKTYQELVELEQKFPDLVTADSITQRVG 68
>gi|307747505|gb|ADN90775.1| DNA ligase [Campylobacter jejuni subsp. jejuni M1]
Length = 647
Score = 35.0 bits (79), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 64 EYLVKIALHH--QKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
EYL K+AL + + YY D PL +D YD + L A +EQ + +D P +
Sbjct: 5 EYLEKVALANLWMRAYYEKDEPLASDEEYDALIRELRAFEEQNKDEISKDSPTQKIA 61
>gi|171914081|ref|ZP_02929551.1| DNA ligase, NAD-dependent [Verrucomicrobium spinosum DSM 4136]
Length = 669
Score = 35.0 bits (79), Expect = 3.9, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
A + V +L + HH + YY+ P +D +D + L L++ P L D P VG
Sbjct: 10 ASLRVAHLREEIEHHNRLYYQNAAPEISDQAFDALLRELQDLEKAHPSLITPDSPTQRVG 69
>gi|320450863|ref|YP_004202959.1| DNA ligase, NAD-dependent [Thermus scotoductus SA-01]
gi|320151032|gb|ADW22410.1| DNA ligase, NAD-dependent [Thermus scotoductus SA-01]
Length = 674
Score = 34.7 bits (78), Expect = 3.9, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 31/61 (50%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
EA + L + +H YY LD P +D YDR+ L L+E+FPEL D P V
Sbjct: 5 EARKRINELRDLIRYHNYRYYVLDAPEISDAEYDRLLRELKELEERFPELKSPDSPTEQV 64
Query: 118 G 118
G
Sbjct: 65 G 65
>gi|254283004|ref|ZP_04957972.1| DNA ligase, NAD-dependent [gamma proteobacterium NOR51-B]
gi|219679207|gb|EED35556.1| DNA ligase, NAD-dependent [gamma proteobacterium NOR51-B]
Length = 675
Score = 34.7 bits (78), Expect = 3.9, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 74 QKW---YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++W YY+ D P D YD RL L+ PEL D P VG
Sbjct: 17 KRWALEYYQQDAPSVPDADYDAAFRRLHELESAHPELASPDSPTRRVG 64
>gi|222055066|ref|YP_002537428.1| DNA ligase, NAD-dependent [Geobacter sp. FRC-32]
gi|254781339|sp|B9M861|DNLJ_GEOSF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|221564355|gb|ACM20327.1| DNA ligase, NAD-dependent [Geobacter sp. FRC-32]
Length = 669
Score = 34.7 bits (78), Expect = 3.9, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + A + ++ L + H YY D P TD YD + L L+++FP+L D P
Sbjct: 1 MDRTAAQLRIQELHREINRHNYLYYVEDRPEITDAEYDLLLRELQQLEKEFPDLVTADSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|332880187|ref|ZP_08447868.1| DNA ligase [Capnocytophaga sp. oral taxon 329 str. F0087]
gi|332681836|gb|EGJ54752.1| DNA ligase [Capnocytophaga sp. oral taxon 329 str. F0087]
Length = 670
Score = 34.7 bits (78), Expect = 4.0, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 27/61 (44%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E ++E L H YY L+ P +D +DR+ L L+ PE D D P V
Sbjct: 4 EVKEQIERLRNELHRHNYNYYVLNAPEISDQEFDRMMRELQDLEAAHPEFDDPDSPTRRV 63
Query: 118 G 118
G
Sbjct: 64 G 64
>gi|219682005|ref|YP_002468389.1| DNA ligase (NAD+) [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
pisum)]
gi|254781272|sp|B8D6X9|DNLJ_BUCAT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|219621738|gb|ACL29894.1| DNA ligase (NAD+) [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
pisum)]
gi|311085811|gb|ADP65893.1| DNA ligase (NAD+) [Buchnera aphidicola str. LL01 (Acyrthosiphon
pisum)]
gi|311086384|gb|ADP66465.1| DNA ligase (NAD+) [Buchnera aphidicola str. TLW03 (Acyrthosiphon
pisum)]
Length = 676
Score = 34.7 bits (78), Expect = 4.0, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 31/57 (54%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++E L KI L ++ +Y+ L+ + +D YD + +L L+ + EL D P VG
Sbjct: 7 KIEKLRKILLKYEYFYHTLNQSIISDAEYDYLFRQLYELELKNKELIPSDSPTQKVG 63
>gi|120434999|ref|YP_860685.1| DNA ligase [Gramella forsetii KT0803]
gi|166215777|sp|A0LZ23|DNLJ_GRAFK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|117577149|emb|CAL65618.1| DNA ligase [Gramella forsetii KT0803]
Length = 664
Score = 34.7 bits (78), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY LD P +D +D + L L+E++PE D++ P VG
Sbjct: 16 QHNYNYYVLDKPQISDYEFDIKLKELQELEEKYPEFEDDNSPTRRVG 62
>gi|15616692|ref|NP_239904.1| DNA ligase (NAD+) [Buchnera aphidicola str. APS (Acyrthosiphon
pisum)]
gi|11132251|sp|P57172|DNLJ_BUCAI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|25294009|pir||F84937 DNA ligase (NAD) (EC 6.5.1.2) [imported] - Buchnera sp. (strain
APS)
gi|10038755|dbj|BAB12790.1| DNA ligase (NAD+) [Buchnera aphidicola str. APS (Acyrthosiphon
pisum)]
Length = 675
Score = 34.7 bits (78), Expect = 4.1, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 31/57 (54%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++E L KI L ++ +Y+ L+ + +D YD + +L L+ + EL D P VG
Sbjct: 7 KIEKLRKILLKYEYFYHTLNQSIISDAEYDYLFRQLYELELKNKELIPSDSPTQKVG 63
>gi|269794376|ref|YP_003313831.1| DNA ligase, NAD-dependent [Sanguibacter keddieii DSM 10542]
gi|269096561|gb|ACZ20997.1| DNA ligase, NAD-dependent [Sanguibacter keddieii DSM 10542]
Length = 871
Score = 34.7 bits (78), Expect = 4.1, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 22/46 (47%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HQ YY D P +D YD + L ++E P+L D P VG
Sbjct: 58 HQFAYYVRDAPTVSDAEYDTLLRELGDIEEAHPQLRTPDSPTQRVG 103
>gi|123774771|sp|Q47SC6|DNLJ_THEFY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|71914739|gb|AAZ54641.1| NAD-dependent DNA ligase [Thermobifida fusca YX]
Length = 745
Score = 34.7 bits (78), Expect = 4.1, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 76 WYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ Y L +P+ +D YD++ L L+ Q+P L D P VG
Sbjct: 46 YRYYLGSPIISDAEYDQLMAELRDLEAQYPSLVTPDSPTQKVG 88
>gi|254564006|ref|YP_003071101.1| DNA ligase [Methylobacterium extorquens DM4]
gi|254271284|emb|CAX27296.1| DNA ligase, NAD(+)-dependent [Methylobacterium extorquens DM4]
Length = 814
Score = 34.7 bits (78), Expect = 4.2, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
V +LS+ A L + + YY D P TD YD + + L+A++ +FP L
Sbjct: 10 VEALSEDAAQARHAELSRAIERANQLYYNEDAPELTDAEYDALRQELEAIEARFPAL 66
>gi|94676849|ref|YP_588544.1| DNA ligase, NAD-dependent [Baumannia cicadellinicola str. Hc
(Homalodisca coagulata)]
gi|123260587|sp|Q1LU20|DNLJ_BAUCH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|94219999|gb|ABF14158.1| DNA ligase, NAD-dependent [Baumannia cicadellinicola str. Hc
(Homalodisca coagulata)]
Length = 671
Score = 34.7 bits (78), Expect = 4.2, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 64 EYLVKIALHHQKW---YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
+Y+ ++ + W YY D P +D YD + +L L+ Q+P+L D P +GY
Sbjct: 6 QYIEQLRQQLRYWNFLYYAKDAPEVSDVEYDWLMMKLRELERQWPDLKTADSPTQHIGY 64
>gi|320008426|gb|ADW03276.1| DNA ligase, NAD-dependent [Streptomyces flavogriseus ATCC 33331]
Length = 731
Score = 34.7 bits (78), Expect = 4.2, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H+ YY D P+ D +DR L+A++ + PEL D P V
Sbjct: 31 HRFRYYVKDQPVVDDAEFDRQMRALEAIEHEHPELRTPDSPTQKVA 76
>gi|332884007|gb|EGK04287.1| DNA ligase [Dysgonomonas mossii DSM 22836]
Length = 665
Score = 34.7 bits (78), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY L P +D +D+ + L L+ Q+PE FD + P VG
Sbjct: 18 HNYDYYVLSAPTISDFEFDKKLKELTDLETQYPEYFDPNSPSQRVG 63
>gi|270292770|ref|ZP_06198981.1| DNA ligase, NAD-dependent [Streptococcus sp. M143]
gi|270278749|gb|EFA24595.1| DNA ligase, NAD-dependent [Streptococcus sp. M143]
Length = 652
Score = 34.7 bits (78), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV + + YY DNP +D YDR+ L L+ +P+ D P + VG
Sbjct: 8 LVALLNRYASEYYTSDNPSVSDSEYDRLYRELVELEAAYPDQVLADSPTHRVG 60
>gi|271501855|ref|YP_003334881.1| DNA ligase [Dickeya dadantii Ech586]
gi|270345410|gb|ACZ78175.1| DNA ligase, NAD-dependent [Dickeya dadantii Ech586]
Length = 683
Score = 34.7 bits (78), Expect = 4.3, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+VE L +H+ Y+ D P D YD + L L++ PEL D P VG
Sbjct: 18 QVEALRAQLRYHEYKYHVEDAPEIPDAEYDTLMNTLKVLEQAHPELVTPDSPTQRVG 74
>gi|325278944|ref|YP_004251486.1| DNA ligase [Odoribacter splanchnicus DSM 20712]
gi|324310753|gb|ADY31306.1| DNA ligase [Odoribacter splanchnicus DSM 20712]
Length = 829
Score = 34.7 bits (78), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 70 ALHHQKWYYRLDN-PLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
AL + + Y ++N P +D +D + L+ L+E++PE++D + P VG
Sbjct: 14 ALEYHNYKYYIENAPEISDREFDGLMHDLEKLEEKYPEMYDPNSPTQRVG 63
>gi|311086964|gb|ADP67044.1| DNA ligase (NAD+) [Buchnera aphidicola str. JF99 (Acyrthosiphon
pisum)]
Length = 678
Score = 34.7 bits (78), Expect = 4.3, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 31/57 (54%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++E L KI L ++ +Y+ L+ + +D YD + +L L+ + EL D P VG
Sbjct: 7 KIEKLRKILLKYEYFYHTLNQSIISDAEYDYLFRQLYELELKNKELIPSDSPTQKVG 63
>gi|161723110|ref|YP_288664.2| NAD-dependent DNA ligase LigA [Thermobifida fusca YX]
Length = 731
Score = 34.7 bits (78), Expect = 4.3, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 76 WYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ Y L +P+ +D YD++ L L+ Q+P L D P VG
Sbjct: 32 YRYYLGSPIISDAEYDQLMAELRDLEAQYPSLVTPDSPTQKVG 74
>gi|125973550|ref|YP_001037460.1| DNA ligase, NAD-dependent [Clostridium thermocellum ATCC 27405]
gi|256003369|ref|ZP_05428360.1| DNA ligase, NAD-dependent [Clostridium thermocellum DSM 2360]
gi|281417755|ref|ZP_06248775.1| DNA ligase, NAD-dependent [Clostridium thermocellum JW20]
gi|166215580|sp|A3DE88|DNLJ_CLOTH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|125713775|gb|ABN52267.1| DNA ligase, NAD-dependent [Clostridium thermocellum ATCC 27405]
gi|255992659|gb|EEU02750.1| DNA ligase, NAD-dependent [Clostridium thermocellum DSM 2360]
gi|281409157|gb|EFB39415.1| DNA ligase, NAD-dependent [Clostridium thermocellum JW20]
gi|316940208|gb|ADU74242.1| DNA ligase, NAD-dependent [Clostridium thermocellum DSM 1313]
Length = 663
Score = 34.7 bits (78), Expect = 4.3, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L +I +H YY D P +D YD + L+ L+++ P+L D P +G
Sbjct: 10 LREILNYHSHKYYVEDAPEISDFEYDELYRELEKLEQERPDLITPDSPTQRIG 62
>gi|313665597|ref|YP_004047468.1| DNA ligase (NAD(+)) [Mycoplasma leachii PG50]
gi|312949194|gb|ADR23790.1| DNA ligase (NAD(+)) [Mycoplasma leachii PG50]
Length = 668
Score = 34.7 bits (78), Expect = 4.4, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 30/65 (46%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK + ++ + L + K YY DNP D YD + L +L+ +PE D P
Sbjct: 1 MSKEQVLLRINQLKEQLNLWSKQYYVDDNPSVDDTEYDLALKELISLENLYPEFITSDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SQKVG 65
>gi|307709253|ref|ZP_07645711.1| DNA ligase, NAD-dependent [Streptococcus mitis SK564]
gi|307619836|gb|EFN98954.1| DNA ligase, NAD-dependent [Streptococcus mitis SK564]
Length = 648
Score = 34.7 bits (78), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV + + YY DNP +D YDR+ L L+ +P+ D P + VG
Sbjct: 4 LVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELESAYPDQVLADSPTHRVG 56
>gi|300361107|ref|ZP_07057284.1| NAD-dependent DNA ligase LigA [Lactobacillus gasseri JV-V03]
gi|300353726|gb|EFJ69597.1| NAD-dependent DNA ligase LigA [Lactobacillus gasseri JV-V03]
Length = 668
Score = 34.7 bits (78), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY D P+ D +YD+ + L L+++FP+L D VG
Sbjct: 27 YYAKDAPIVEDAVYDKAYQELVELEKRFPDLVTSDSITQRVG 68
>gi|218532981|ref|YP_002423797.1| DNA ligase, NAD-dependent [Methylobacterium chloromethanicum CM4]
gi|254781363|sp|B7KU78|DNLJ_METC4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|218525284|gb|ACK85869.1| DNA ligase, NAD-dependent [Methylobacterium chloromethanicum CM4]
Length = 814
Score = 34.7 bits (78), Expect = 4.4, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
V +LS+ A L + + YY D P TD YD + + L+A++ +FP L
Sbjct: 10 VEALSEDAAQARHAELSRAIERANQLYYNEDAPELTDAEYDALRQELEAIEARFPAL 66
>gi|189347498|ref|YP_001944027.1| DNA ligase, NAD-dependent [Chlorobium limicola DSM 245]
gi|254781283|sp|B3EFT6|DNLJ_CHLL2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|189341645|gb|ACD91048.1| DNA ligase, NAD-dependent [Chlorobium limicola DSM 245]
Length = 673
Score = 34.7 bits (78), Expect = 4.4, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + A E+ L K H YY P+ +D +DR+ E+L AL+ P+L D P
Sbjct: 1 MDRAMAADEIARLRKEIERHNYLYYVEAEPVISDYEFDRLLEQLIALERLHPDLVTPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SLRVG 65
>gi|315641089|ref|ZP_07896168.1| NAD-dependent DNA ligase LigA [Enterococcus italicus DSM 15952]
gi|315483097|gb|EFU73614.1| NAD-dependent DNA ligase LigA [Enterococcus italicus DSM 15952]
Length = 671
Score = 34.7 bits (78), Expect = 4.5, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY D P+ D YD++ ++L AL+ PE D P VG
Sbjct: 23 YYVKDQPVVDDAYYDQLYQQLVALETAHPEYQTSDSPTQRVG 64
>gi|240141492|ref|YP_002965972.1| DNA ligase, NAD(+)-dependent [Methylobacterium extorquens AM1]
gi|240011469|gb|ACS42695.1| DNA ligase, NAD(+)-dependent [Methylobacterium extorquens AM1]
Length = 814
Score = 34.7 bits (78), Expect = 4.5, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
V +LS+ A L + + YY D P TD YD + + L+A++ +FP L
Sbjct: 10 VEALSEDAAQARHAELSRAIERANQLYYNEDAPELTDAEYDALRQELEAIEARFPAL 66
>gi|212212963|ref|YP_002303899.1| NAD-dependent DNA ligase [Coxiella burnetii CbuG_Q212]
gi|254781302|sp|B6J1C6|DNLJ_COXB2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|212011373|gb|ACJ18754.1| NAD-dependent DNA ligase [Coxiella burnetii CbuG_Q212]
Length = 677
Score = 34.7 bits (78), Expect = 4.5, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY L P D +YD + L L++++PE P VG
Sbjct: 24 HNYRYYVLSQPTIPDSVYDELFHELQKLEKKYPETITPSSPTQRVG 69
>gi|209364099|ref|YP_001424866.2| NAD-dependent DNA ligase [Coxiella burnetii Dugway 5J108-111]
gi|207082032|gb|ABS76887.2| NAD-dependent DNA ligase [Coxiella burnetii Dugway 5J108-111]
Length = 673
Score = 34.7 bits (78), Expect = 4.5, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY L P D +YD + L L++++PE P VG
Sbjct: 24 HNYRYYVLSQPTIPDSVYDELFHELQKLEKKYPETITPSSPTQRVG 69
>gi|253996456|ref|YP_003048520.1| DNA ligase, NAD-dependent [Methylotenera mobilis JLW8]
gi|253983135|gb|ACT47993.1| DNA ligase, NAD-dependent [Methylotenera mobilis JLW8]
Length = 677
Score = 34.7 bits (78), Expect = 4.5, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
YY LD P D YD++ L L++ +P L D P V
Sbjct: 27 YYVLDAPSVPDSEYDKIYRELQTLEQAYPSLVVADSPTQRV 67
>gi|116873191|ref|YP_849972.1| NAD-dependent DNA ligase LigA [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|123466434|sp|A0AJL1|DNLJ_LISW6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|116742069|emb|CAK21193.1| DNA ligase [Listeria welshimeri serovar 6b str. SLCC5334]
Length = 670
Score = 34.7 bits (78), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%)
Query: 64 EYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E L+ I + YY +DNP D YD+ + L ++E PE D P VG
Sbjct: 8 EELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIEEAHPEWVTPDSPSKRVG 62
>gi|212218835|ref|YP_002305622.1| NAD-dependent DNA ligase [Coxiella burnetii CbuK_Q154]
gi|254781301|sp|B6J878|DNLJ_COXB1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|212013097|gb|ACJ20477.1| NAD-dependent DNA ligase [Coxiella burnetii CbuK_Q154]
Length = 673
Score = 34.7 bits (78), Expect = 4.6, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY L P D +YD + L L++++PE P VG
Sbjct: 24 HNYRYYVLSQPTIPDSVYDELFHELQKLEKKYPETITPSSPTQRVG 69
>gi|190359248|sp|A9KCS0|DNLJ_COXBN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
Length = 670
Score = 34.7 bits (78), Expect = 4.6, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY L P D +YD + L L++++PE P VG
Sbjct: 21 HNYRYYVLSQPTIPDSVYDELFHELQKLEKKYPETITPSSPTQRVG 66
>gi|251782129|ref|YP_002996431.1| NAD-dependent DNA ligase LigA [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|242390758|dbj|BAH81217.1| NAD-dependent DNA ligase [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
Length = 652
Score = 34.7 bits (78), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L ++ +++ YY D+P +D YD++ L L+ Q+PE +D P VG
Sbjct: 5 IRELTELLNRYRQEYYTNDSPSVSDSEYDKLYRELVDLENQYPEHVLQDSPTQNVG 60
>gi|194016164|ref|ZP_03054779.1| DNA ligase, NAD-dependent [Bacillus pumilus ATCC 7061]
gi|194012519|gb|EDW22086.1| DNA ligase, NAD-dependent [Bacillus pumilus ATCC 7061]
Length = 668
Score = 34.7 bits (78), Expect = 4.6, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 30/65 (46%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K A +E L +I + Y+ LD P D YD L +L+E+ P+L D P
Sbjct: 1 MDKEAAKRRIEELHQILNQYNYEYHTLDRPSVPDAEYDARMRELISLEEEHPDLKAADSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SQRVG 65
>gi|56966057|pdb|1TA8|A Chain A, Structural Rearrangement Accompanying Nad+ Synthesis
Within A Bacterial Dna Ligase Crystal
Length = 332
Score = 34.7 bits (78), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY D P D +YDR+ + L ++ +FP+L D P VG
Sbjct: 29 YYVKDQPSVEDYVYDRLYKELVDIETEFPDLITPDSPTQRVG 70
>gi|332665881|ref|YP_004448669.1| DNA ligase [Haliscomenobacter hydrossis DSM 1100]
gi|332334695|gb|AEE51796.1| DNA ligase [Haliscomenobacter hydrossis DSM 1100]
Length = 711
Score = 34.7 bits (78), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
L + ++H+ YY ++P+ +D YD++ + L+ L+E PEL D P V
Sbjct: 36 LCGLIIYHEWRYYIQNDPVLSDYEYDQLFKLLERLEEVHPELVSADSPSQRV 87
>gi|332653279|ref|ZP_08419024.1| DNA ligase, NAD-dependent [Ruminococcaceae bacterium D16]
gi|332518425|gb|EGJ48028.1| DNA ligase, NAD-dependent [Ruminococcaceae bacterium D16]
Length = 657
Score = 34.7 bits (78), Expect = 4.7, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY D+P +D YD RL+ L+ PEL D P VG
Sbjct: 21 YYVKDDPTMSDYDYDHKLRRLEELEGAHPELITPDSPTQRVG 62
>gi|306829554|ref|ZP_07462744.1| NAD-dependent DNA ligase LigA [Streptococcus mitis ATCC 6249]
gi|304428640|gb|EFM31730.1| NAD-dependent DNA ligase LigA [Streptococcus mitis ATCC 6249]
Length = 652
Score = 34.7 bits (78), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV + + YY DNP +D YDR+ L L+ +P+ D P + VG
Sbjct: 8 LVALLNRYASEYYTSDNPSVSDSEYDRLYRELVELEAAYPDQVLADSPTHRVG 60
>gi|323126984|gb|ADX24281.1| NAD-dependent DNA ligase LigA [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
Length = 652
Score = 34.7 bits (78), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L ++ +++ YY D+P +D YD++ L L+ Q+PE +D P VG
Sbjct: 5 IRELTELLNRYRQEYYTNDSPSVSDSEYDKLYRELVDLENQYPEHVLQDSPTQNVG 60
>gi|260433791|ref|ZP_05787762.1| DNA ligase, NAD-dependent [Silicibacter lacuscaerulensis ITI-1157]
gi|260417619|gb|EEX10878.1| DNA ligase, NAD-dependent [Silicibacter lacuscaerulensis ITI-1157]
Length = 708
Score = 34.7 bits (78), Expect = 4.7, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 31/68 (45%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V L++ +A E+ L L + Y+ D P +D YD + R ++ +FP L
Sbjct: 7 VQELTEDQAKEELARLASALLRANELYHGQDAPEISDAEYDALKRRNLEIEARFPHLKRP 66
Query: 111 DHPWNTVG 118
D P VG
Sbjct: 67 DSPTEQVG 74
>gi|163854038|ref|YP_001642081.1| DNA ligase, NAD-dependent [Methylobacterium extorquens PA1]
gi|254781364|sp|A9VWA4|DNLJ_METEP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|163665643|gb|ABY33010.1| DNA ligase, NAD-dependent [Methylobacterium extorquens PA1]
Length = 814
Score = 34.7 bits (78), Expect = 4.7, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
V +LS+ A L + + YY D P TD YD + + L+A++ +FP L
Sbjct: 10 VEALSEDAAQARHAELSRAIERANQLYYNEDAPELTDAEYDALRQELEAIEARFPAL 66
>gi|309777086|ref|ZP_07672052.1| DNA ligase, NAD-dependent [Erysipelotrichaceae bacterium 3_1_53]
gi|308915156|gb|EFP60930.1| DNA ligase, NAD-dependent [Erysipelotrichaceae bacterium 3_1_53]
Length = 665
Score = 34.7 bits (78), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P +D YDR + L AL+E++P+ D + VG
Sbjct: 20 YYVLDQPSMSDQEYDRYYQELVALEEKYPQYRDPNSITQRVG 61
>gi|298245037|ref|ZP_06968843.1| DNA ligase, NAD-dependent [Ktedonobacter racemifer DSM 44963]
gi|297552518|gb|EFH86383.1| DNA ligase, NAD-dependent [Ktedonobacter racemifer DSM 44963]
Length = 700
Score = 34.7 bits (78), Expect = 4.7, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 42 ESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQ 101
ES L+ A + + + E+ + ++ A + Y+ LDNP +D YD++ L ++
Sbjct: 18 ESLLEHAGQTEEERLAKRVAELRHQIEEANYQ---YHVLDNPTLSDAEYDQLMIELQRIE 74
Query: 102 EQFPELFDEDHPWNTVG 118
+ PEL + P VG
Sbjct: 75 GEHPELVTPESPTQRVG 91
>gi|255283571|ref|ZP_05348126.1| DNA ligase, NAD-dependent [Bryantella formatexigens DSM 14469]
gi|255265833|gb|EET59038.1| DNA ligase, NAD-dependent [Bryantella formatexigens DSM 14469]
Length = 667
Score = 34.7 bits (78), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
H+ YY L+ P TD YDR+ + L AL+++ + P TVGY
Sbjct: 18 HRNAYYNLNAPTITDQEYDRLYDELAALEKETGVILSYS-PTQTVGY 63
>gi|165923886|ref|ZP_02219718.1| DNA ligase, NAD-dependent [Coxiella burnetii RSA 334]
gi|165916671|gb|EDR35275.1| DNA ligase, NAD-dependent [Coxiella burnetii RSA 334]
Length = 670
Score = 34.7 bits (78), Expect = 4.8, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY L P D +YD + L L++++PE P VG
Sbjct: 21 HNYRYYVLSQPTIPDSVYDELFHELQKLEKKYPETITPSSPTQRVG 66
>gi|307706499|ref|ZP_07643306.1| DNA ligase, NAD-dependent [Streptococcus mitis SK321]
gi|307617954|gb|EFN97114.1| DNA ligase, NAD-dependent [Streptococcus mitis SK321]
Length = 652
Score = 34.7 bits (78), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV + + YY DNP +D YDR+ L L+ +P+ D P + VG
Sbjct: 8 LVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPDQVLADSPTHRVG 60
>gi|153207803|ref|ZP_01946403.1| DNA ligase, NAD-dependent [Coxiella burnetii 'MSU Goat Q177']
gi|120576355|gb|EAX32979.1| DNA ligase, NAD-dependent [Coxiella burnetii 'MSU Goat Q177']
Length = 670
Score = 34.7 bits (78), Expect = 4.8, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY L P D +YD + L L++++PE P VG
Sbjct: 21 HNYRYYVLSQPTIPDSVYDELFHELQKLEKKYPETITPSSPTQRVG 66
>gi|315613211|ref|ZP_07888121.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis ATCC 49296]
gi|315314773|gb|EFU62815.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis ATCC 49296]
Length = 652
Score = 34.7 bits (78), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV + + YY DNP +D YDR+ L L+ +P+ D P + VG
Sbjct: 8 LVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELEAAYPDQVLADSPTHRVG 60
>gi|89069525|ref|ZP_01156869.1| DNA ligase, NAD-dependent [Oceanicola granulosus HTCC2516]
gi|89044860|gb|EAR50950.1| DNA ligase, NAD-dependent [Oceanicola granulosus HTCC2516]
Length = 739
Score = 34.7 bits (78), Expect = 4.9, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 83 PLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
P+ D YD + R AL+ +FPEL D P VG
Sbjct: 30 PIMDDAAYDALKRRNAALEARFPELMRADSPTGQVG 65
>gi|307708748|ref|ZP_07645210.1| DNA ligase, NAD-dependent [Streptococcus mitis NCTC 12261]
gi|307615114|gb|EFN94325.1| DNA ligase, NAD-dependent [Streptococcus mitis NCTC 12261]
Length = 652
Score = 34.7 bits (78), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV + + YY DNP +D YDR+ L L+ +P+ D P + VG
Sbjct: 8 LVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPDQVLADSPTHRVG 60
>gi|323342976|ref|ZP_08083207.1| NAD-dependent DNA ligase LigA [Erysipelothrix rhusiopathiae ATCC
19414]
gi|322463040|gb|EFY08235.1| NAD-dependent DNA ligase LigA [Erysipelothrix rhusiopathiae ATCC
19414]
Length = 659
Score = 34.7 bits (78), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 71 LHHQKW-YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LH + Y+ +D P D YD++ L+ L+ + PE FD + P VG
Sbjct: 13 LHQYNYEYHVMDQPTIADVEYDQLLRELNELEVKHPEFFDINSPTQKVG 61
>gi|146277206|ref|YP_001167365.1| DNA ligase, NAD-dependent [Rhodobacter sphaeroides ATCC 17025]
gi|166216230|sp|A4WRP6|DNLJ_RHOS5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|145555447|gb|ABP70060.1| DNA ligase, NAD-dependent [Rhodobacter sphaeroides ATCC 17025]
Length = 704
Score = 34.7 bits (78), Expect = 4.9, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
Y+ D P +D YD + R A++E+FP L D P VG
Sbjct: 33 YHTHDAPRISDADYDALKRRNRAIEERFPALRRSDSPSERVG 74
>gi|323490410|ref|ZP_08095622.1| DNA ligase [Planococcus donghaensis MPA1U2]
gi|323395909|gb|EGA88743.1| DNA ligase [Planococcus donghaensis MPA1U2]
Length = 668
Score = 34.7 bits (78), Expect = 5.0, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D +YD++ L L+ +P+L D P VG
Sbjct: 24 YYVLDKPAVPDAIYDQLLNELIDLETLYPDLVFPDSPTQRVG 65
>gi|294340191|emb|CAZ88563.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Thiomonas sp.
3As]
Length = 686
Score = 34.7 bits (78), Expect = 5.0, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 20/42 (47%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD PL D YD + L ++ PEL D P VG
Sbjct: 28 YYVLDAPLAPDADYDALFRELQQIEADHPELRTPDSPTQRVG 69
>gi|296135970|ref|YP_003643212.1| DNA ligase, NAD-dependent [Thiomonas intermedia K12]
gi|295796092|gb|ADG30882.1| DNA ligase, NAD-dependent [Thiomonas intermedia K12]
Length = 688
Score = 34.7 bits (78), Expect = 5.0, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 20/42 (47%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD PL D YD + L ++ PEL D P VG
Sbjct: 28 YYVLDAPLAPDADYDALFRELQQIEADHPELRTPDSPTQRVG 69
>gi|325288193|ref|YP_004263983.1| DNA ligase [Cellulophaga lytica DSM 7489]
gi|324323647|gb|ADY31112.1| DNA ligase [Cellulophaga lytica DSM 7489]
Length = 664
Score = 34.7 bits (78), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY LD P +D +D + L AL+ + PE +D + P VG
Sbjct: 17 HNHNYYVLDTPTISDYDFDIKLKELQALEAKHPEFYDANSPTLRVG 62
>gi|306825169|ref|ZP_07458511.1| NAD-dependent DNA ligase LigA [Streptococcus sp. oral taxon 071
str. 73H25AP]
gi|304432605|gb|EFM35579.1| NAD-dependent DNA ligase LigA [Streptococcus sp. oral taxon 071
str. 73H25AP]
Length = 652
Score = 34.7 bits (78), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV + + YY DNP +D YDR+ L L+ +P+ D P + VG
Sbjct: 8 LVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELEAAYPDQVLADSPTHRVG 60
>gi|225155696|ref|ZP_03724184.1| DNA ligase (NAD(+)) [Opitutaceae bacterium TAV2]
gi|224803490|gb|EEG21725.1| DNA ligase (NAD(+)) [Opitutaceae bacterium TAV2]
Length = 761
Score = 34.7 bits (78), Expect = 5.0, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H + YYR P +D YDR+ L L+ Q P+L D P +G
Sbjct: 22 HDELYYRAARPEISDYDYDRLKRELANLESQHPQLDLGDSPTLRIG 67
>gi|254495534|ref|ZP_05108458.1| DNA ligase, NAD-dependent [Polaribacter sp. MED152]
gi|85819890|gb|EAQ41047.1| DNA ligase, NAD-dependent [Polaribacter sp. MED152]
Length = 665
Score = 34.7 bits (78), Expect = 5.0, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY LDN +D +D + LD L+++ P FD + P VG
Sbjct: 17 HNYNYYVLDNATISDFEFDIKLKELDKLEQENPLFFDANSPTQRVG 62
>gi|56966058|pdb|1TAE|A Chain A, Structural Rearrangement Accompanying Nad+ Synthesis
Within A Bacterial Dna Ligase Crystal
gi|56966059|pdb|1TAE|B Chain B, Structural Rearrangement Accompanying Nad+ Synthesis
Within A Bacterial Dna Ligase Crystal
gi|56966060|pdb|1TAE|C Chain C, Structural Rearrangement Accompanying Nad+ Synthesis
Within A Bacterial Dna Ligase Crystal
gi|56966061|pdb|1TAE|D Chain D, Structural Rearrangement Accompanying Nad+ Synthesis
Within A Bacterial Dna Ligase Crystal
gi|212374930|pdb|3BA8|A Chain A, Structural Basis For The Inhibition Of Bacterial Nad+
Dependent Dna Ligase
gi|212374931|pdb|3BA9|A Chain A, Structural Basis For Inhbition Of Nad-Dependent Ligase
gi|212374932|pdb|3BAA|A Chain A, Structural Basis For The Inhibition Of Bacterial Nad+
Dependent Dna Ligase
gi|212374933|pdb|3BAB|A Chain A, Structural Basis For The Inhibition Of Bacterial Nad+
Dependent Dna Ligase
Length = 332
Score = 34.7 bits (78), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY D P D +YDR+ + L ++ +FP+L D P VG
Sbjct: 29 YYVKDQPSVEDYVYDRLYKELVDIETEFPDLITPDSPTQRVG 70
>gi|331266328|ref|YP_004325958.1| DNA ligase, NAD-dependent [Streptococcus oralis Uo5]
gi|326683000|emb|CBZ00617.1| DNA ligase, NAD-dependent [Streptococcus oralis Uo5]
Length = 652
Score = 34.3 bits (77), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV + + YY DNP +D YDR+ L L+ +P+ D P + VG
Sbjct: 8 LVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELEAAYPDQVLADSPTHRVG 60
>gi|307704876|ref|ZP_07641768.1| DNA ligase, NAD-dependent [Streptococcus mitis SK597]
gi|307621589|gb|EFO00634.1| DNA ligase, NAD-dependent [Streptococcus mitis SK597]
Length = 652
Score = 34.3 bits (77), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV + + YY DNP +D YDR+ L L+ +P+ D P + VG
Sbjct: 8 LVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPDQVLADSPTHRVG 60
>gi|225022751|ref|ZP_03711943.1| hypothetical protein CORMATOL_02796 [Corynebacterium matruchotii
ATCC 33806]
gi|224944472|gb|EEG25681.1| hypothetical protein CORMATOL_02796 [Corynebacterium matruchotii
ATCC 33806]
Length = 699
Score = 34.3 bits (77), Expect = 5.1, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E + L H++ YY P TD +D + ++L+AL+ PEL D P VG
Sbjct: 17 EWQRLASEVTRHRELYYN-QTPEITDAEFDALFKKLEALEADHPELATPDSPTQQVG 72
>gi|305682056|ref|ZP_07404860.1| DNA ligase (NAD+) [Corynebacterium matruchotii ATCC 14266]
gi|305658529|gb|EFM48032.1| DNA ligase (NAD+) [Corynebacterium matruchotii ATCC 14266]
Length = 715
Score = 34.3 bits (77), Expect = 5.2, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E + L H++ YY P TD +D + ++L+AL+ PEL D P VG
Sbjct: 24 EWQRLASEVTRHRELYYN-QTPEITDAEFDALFKKLEALEADHPELATPDSPTQQVG 79
>gi|168017901|ref|XP_001761485.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687169|gb|EDQ73553.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1163
Score = 34.3 bits (77), Expect = 5.2, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 30/65 (46%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
L G+ + VE L ++ + Y+ L NPL +D YD + L L+ + P E+
Sbjct: 311 LVDGDILDRVETLRRVIADYSYQYHTLGNPLISDSAYDALVRELKDLESKLPAEASEESV 370
Query: 114 WNTVG 118
VG
Sbjct: 371 TAKVG 375
>gi|152997408|ref|YP_001342243.1| DNA ligase, NAD-dependent [Marinomonas sp. MWYL1]
gi|190359264|sp|A6W0S9|DNLJ_MARMS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|150838332|gb|ABR72308.1| DNA ligase, NAD-dependent [Marinomonas sp. MWYL1]
Length = 672
Score = 34.3 bits (77), Expect = 5.2, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
Y+ D P+ D +YDR +L +++ + PE D P VG
Sbjct: 20 YHVKDEPIVPDAVYDRDYRQLQSIEAEHPEWIQADSPTQRVG 61
>gi|7674018|sp|Q9ZFY8|DNLJ_THESK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|4235370|gb|AAD13188.1| NAD-dependent DNA ligase [Thermus sp. AK16D]
Length = 674
Score = 34.3 bits (77), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 31/61 (50%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
EA V L + +H YY LD P +D YDR+ L L+E+FPEL D P V
Sbjct: 5 EARRRVNELRDLIRYHNYLYYVLDAPEISDAEYDRLLRELKELEERFPELKSPDSPTEQV 64
Query: 118 G 118
G
Sbjct: 65 G 65
>gi|322376748|ref|ZP_08051241.1| DNA ligase, NAD-dependent [Streptococcus sp. M334]
gi|321282555|gb|EFX59562.1| DNA ligase, NAD-dependent [Streptococcus sp. M334]
Length = 652
Score = 34.3 bits (77), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV + + YY DNP +D YDR+ L L+ +P+ D P + VG
Sbjct: 8 LVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPDQVLADSPTHRVG 60
>gi|322375289|ref|ZP_08049802.1| DNA ligase, NAD-dependent [Streptococcus sp. C300]
gi|321279552|gb|EFX56592.1| DNA ligase, NAD-dependent [Streptococcus sp. C300]
Length = 652
Score = 34.3 bits (77), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV + + YY DNP +D YDR+ L L+ +P+ D P + VG
Sbjct: 8 LVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELEAAYPDQVLADSPTHRVG 60
>gi|289168011|ref|YP_003446280.1| DNA ligase [Streptococcus mitis B6]
gi|288907578|emb|CBJ22415.1| DNA ligase [Streptococcus mitis B6]
Length = 652
Score = 34.3 bits (77), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV + + YY DNP +D YDR+ L L+ +P+ D P + VG
Sbjct: 8 LVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPDQVLADSPTHRVG 60
>gi|83951899|ref|ZP_00960631.1| DNA ligase, NAD-dependent [Roseovarius nubinhibens ISM]
gi|83836905|gb|EAP76202.1| DNA ligase, NAD-dependent [Roseovarius nubinhibens ISM]
Length = 748
Score = 34.3 bits (77), Expect = 5.2, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
Y+ D P +D YD + +R ++ +FPEL +D P VG
Sbjct: 33 YHGADAPEISDAEYDALKQRNAEIEARFPELKRDDSPSEQVG 74
>gi|260584784|ref|ZP_05852529.1| DNA ligase, NAD-dependent [Granulicatella elegans ATCC 700633]
gi|260157441|gb|EEW92512.1| DNA ligase, NAD-dependent [Granulicatella elegans ATCC 700633]
Length = 668
Score = 34.3 bits (77), Expect = 5.3, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY D P TD YD L L+ ++P+L D P VG
Sbjct: 23 YYVQDRPTVTDHEYDETYHELVRLETEYPQLVTSDSPTQRVG 64
>gi|228904740|ref|ZP_04068794.1| DNA ligase [Bacillus thuringiensis IBL 4222]
gi|228854754|gb|EEM99358.1| DNA ligase [Bacillus thuringiensis IBL 4222]
Length = 656
Score = 34.3 bits (77), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH YY +D P+ +D YDR+ + L ++E PE P N VG
Sbjct: 20 HH---YYTMDKPIASDAEYDRLYDELVKIEELHPEWTVAHSPSNRVG 63
>gi|157691416|ref|YP_001485878.1| NAD-dependent DNA ligase LigA [Bacillus pumilus SAFR-032]
gi|190359234|sp|A8FAQ1|DNLJ_BACP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|157680174|gb|ABV61318.1| DNA ligase (NAD(+)) [Bacillus pumilus SAFR-032]
Length = 668
Score = 34.3 bits (77), Expect = 5.4, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 30/65 (46%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K A +E L +I + Y+ LD P D YD L +L+E+ P+L D P
Sbjct: 1 MDKEAAKRRIEELHEILNQYNYEYHTLDRPSVPDAEYDARMRELISLEEEHPDLKAADSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SQRVG 65
>gi|313681943|ref|YP_004059681.1| DNA ligase, nad-dependent [Sulfuricurvum kujiense DSM 16994]
gi|313154803|gb|ADR33481.1| DNA ligase, NAD-dependent [Sulfuricurvum kujiense DSM 16994]
Length = 676
Score = 34.3 bits (77), Expect = 5.5, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
VE L K + H YY LD+P+ TD YD + ++ A + + P D P VG
Sbjct: 10 VEQLKKYSYH----YYVLDDPITTDEEYDILYHKVVAYEHEHPSEIISDSPTQRVG 61
>gi|126737638|ref|ZP_01753368.1| DNA ligase, NAD-dependent [Roseobacter sp. SK209-2-6]
gi|126721031|gb|EBA17735.1| DNA ligase, NAD-dependent [Roseobacter sp. SK209-2-6]
Length = 749
Score = 34.3 bits (77), Expect = 5.5, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 49 KKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
K ++ LS+ EA E+ L + + ++ D +DG YDR RL L + FP+L
Sbjct: 3 KPISDLSENEAQEELNELKLLIWSADRLHHTHDISEISDGAYDREKRRLKELVDTFPKL 61
>gi|58336856|ref|YP_193441.1| DNA ligase [Lactobacillus acidophilus NCFM]
gi|227903415|ref|ZP_04021220.1| DNA ligase [Lactobacillus acidophilus ATCC 4796]
gi|75357942|sp|Q5FLL4|DNLJ_LACAC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|58254173|gb|AAV42410.1| DNA ligase [Lactobacillus acidophilus NCFM]
gi|227868891|gb|EEJ76312.1| DNA ligase [Lactobacillus acidophilus ATCC 4796]
Length = 668
Score = 34.3 bits (77), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 17/77 (22%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKW---YYRLDNPLFTDGLYDRVSERLDALQ 101
LD+AKK SL + + KW YY D P D +YD+ RL L+
Sbjct: 6 LDEAKKEASLLRNQL--------------DKWADAYYSKDAPEVEDNVYDQKYSRLLELE 51
Query: 102 EQFPELFDEDHPWNTVG 118
+QFPE+ D VG
Sbjct: 52 KQFPEIVTPDSITQRVG 68
>gi|228472685|ref|ZP_04057445.1| DNA ligase, NAD-dependent [Capnocytophaga gingivalis ATCC 33624]
gi|228276098|gb|EEK14854.1| DNA ligase, NAD-dependent [Capnocytophaga gingivalis ATCC 33624]
Length = 666
Score = 34.3 bits (77), Expect = 5.6, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 29/57 (50%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++E L K H YY LD P +D +D+ + L L+ Q+P+ D + P VG
Sbjct: 7 QIEALRKELNEHNYNYYVLDTPSISDYEFDQKLKALQDLEAQYPQYKDPNSPTVRVG 63
>gi|83319601|ref|YP_424672.1| DNA ligase, NAD-dependent [Mycoplasma capricolum subsp. capricolum
ATCC 27343]
gi|123740036|sp|Q2SRE1|DNLJ_MYCCT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|83283487|gb|ABC01419.1| DNA ligase, NAD-dependent [Mycoplasma capricolum subsp. capricolum
ATCC 27343]
Length = 668
Score = 34.3 bits (77), Expect = 5.6, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 30/65 (46%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK + ++ + L + K YY DNP D YD + L +L+ +PE D P
Sbjct: 1 MSKEQILLRINQLKEQLNLWSKQYYVDDNPSVDDTEYDLALKELISLENLYPEFITSDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SQKVG 65
>gi|154499783|ref|ZP_02037821.1| hypothetical protein BACCAP_03440 [Bacteroides capillosus ATCC
29799]
gi|150271381|gb|EDM98638.1| hypothetical protein BACCAP_03440 [Bacteroides capillosus ATCC
29799]
Length = 673
Score = 34.3 bits (77), Expect = 5.8, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
YY L++P +D +YDR+ E L L E + + P NTVGY
Sbjct: 23 YYNLNSPSVSDAVYDRLFEELQEL-ESATGVQMSNSPTNTVGY 64
>gi|171779630|ref|ZP_02920586.1| hypothetical protein STRINF_01467 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171281732|gb|EDT47166.1| hypothetical protein STRINF_01467 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 652
Score = 34.3 bits (77), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++K YY D P +D YD++ L L++ P+L D P VG
Sbjct: 14 QYRKEYYTQDQPTVSDSEYDKLYRELVELEKANPDLILPDSPTQAVG 60
>gi|78357136|ref|YP_388585.1| DNA ligase, NAD-dependent [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
gi|123768784|sp|Q30ZK6|DNLJ_DESDG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|78219541|gb|ABB38890.1| DNA ligase, NAD-dependent [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
Length = 705
Score = 34.3 bits (77), Expect = 5.9, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+E L + +H YY +D P +D YD + L L+E+ PE P + VG
Sbjct: 19 MEELRTLLEYHGHRYYVMDEPEISDAEYDALFRELVRLEEEHPEHIHPGSPTHKVG 74
>gi|332362528|gb|EGJ40328.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK1056]
Length = 652
Score = 34.3 bits (77), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV++ + YY D P +D YDR+ L L+E++P D P + VG
Sbjct: 8 LVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDILPDSPTHRVG 60
>gi|325696052|gb|EGD37943.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK160]
Length = 652
Score = 34.3 bits (77), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV++ + YY D P +D YDR+ L L+E++P D P + VG
Sbjct: 8 LVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDILPDSPTHRVG 60
>gi|327461089|gb|EGF07422.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK1057]
Length = 652
Score = 34.3 bits (77), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV++ + YY D P +D YDR+ L L+E++P D P + VG
Sbjct: 8 LVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDILPDSPTHRVG 60
>gi|325694926|gb|EGD36831.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK150]
Length = 652
Score = 34.3 bits (77), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV++ + YY D P +D YDR+ L L+E++P D P + VG
Sbjct: 8 LVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDILPDSPTHRVG 60
>gi|325570045|ref|ZP_08145970.1| NAD-dependent DNA ligase LigA [Enterococcus casseliflavus ATCC
12755]
gi|325156873|gb|EGC69044.1| NAD-dependent DNA ligase LigA [Enterococcus casseliflavus ATCC
12755]
Length = 687
Score = 34.3 bits (77), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY D P D LYD++ L ++ +P+L ED P VG
Sbjct: 37 YYVKDQPSVEDYLYDQLYAELVEIETNYPQLVTEDSPTQRVG 78
>gi|313884866|ref|ZP_07818618.1| DNA ligase (NAD+) [Eremococcus coleocola ACS-139-V-Col8]
gi|312619557|gb|EFR30994.1| DNA ligase (NAD+) [Eremococcus coleocola ACS-139-V-Col8]
Length = 673
Score = 34.3 bits (77), Expect = 6.1, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D +YD++ +L+ L++ P+ D P +G
Sbjct: 26 YYVLDKPQAEDAVYDQMYRQLENLEKIHPDWLSPDSPTQRIG 67
>gi|257865964|ref|ZP_05645617.1| DNA ligase [Enterococcus casseliflavus EC30]
gi|257872297|ref|ZP_05651950.1| DNA ligase [Enterococcus casseliflavus EC10]
gi|257799898|gb|EEV28950.1| DNA ligase [Enterococcus casseliflavus EC30]
gi|257806461|gb|EEV35283.1| DNA ligase [Enterococcus casseliflavus EC10]
Length = 676
Score = 34.3 bits (77), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY D P D LYD++ L ++ +P+L ED P VG
Sbjct: 26 YYVKDQPSVEDYLYDQLYAELVEIETNYPQLVTEDSPTQRVG 67
>gi|125718295|ref|YP_001035428.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK36]
gi|166216249|sp|A3CNX3|DNLJ_STRSV RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|125498212|gb|ABN44878.1| DNA ligase, putative [Streptococcus sanguinis SK36]
Length = 652
Score = 34.3 bits (77), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV++ + YY D P +D YDR+ L L+E++P D P + VG
Sbjct: 8 LVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDILPDSPTHRVG 60
>gi|325687188|gb|EGD29210.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK72]
Length = 652
Score = 34.3 bits (77), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV++ + YY D P +D YDR+ L L+E++P D P + VG
Sbjct: 8 LVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDILPDSPTHRVG 60
>gi|289679597|ref|ZP_06500487.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. syringae
FF5]
Length = 102
Score = 34.3 bits (77), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 22/46 (47%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H Y+ LD P D YDR+ L AL+ + P L D P VG
Sbjct: 18 HNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLVTPDSPTQRVG 63
>gi|257875591|ref|ZP_05655244.1| DNA ligase [Enterococcus casseliflavus EC20]
gi|257809757|gb|EEV38577.1| DNA ligase [Enterococcus casseliflavus EC20]
Length = 676
Score = 34.3 bits (77), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY D P D LYD++ L ++ +P+L ED P VG
Sbjct: 26 YYVKDQPSVEDYLYDQLYAELVEIETNYPQLVTEDSPTQRVG 67
>gi|193216704|ref|YP_001999946.1| DNA ligase [Mycoplasma arthritidis 158L3-1]
gi|254781372|sp|B3PMJ0|DNLJ_MYCA5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|193002027|gb|ACF07242.1| DNA ligase [Mycoplasma arthritidis 158L3-1]
Length = 665
Score = 34.3 bits (77), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
YY LD PL D +YDR +L L+EQ+ F + N+
Sbjct: 25 YYNLDAPLVEDAIYDREILKLKKLEEQYSSYFSFEELANS 64
>gi|332366947|gb|EGJ44687.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK1059]
Length = 652
Score = 34.3 bits (77), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV++ + YY D P +D YDR+ L L+E++P D P + VG
Sbjct: 8 LVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDILPDSPTHRVG 60
>gi|332361975|gb|EGJ39777.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK49]
Length = 652
Score = 34.3 bits (77), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV++ + YY D P +D YDR+ L L+E++P D P + VG
Sbjct: 8 LVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDILPDSPTHRVG 60
>gi|327489925|gb|EGF21714.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK1058]
Length = 652
Score = 34.3 bits (77), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV++ + YY D P +D YDR+ L L+E++P D P + VG
Sbjct: 8 LVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDILPDSPTHRVG 60
>gi|319779225|ref|YP_004130138.1| DNA ligase [Taylorella equigenitalis MCE9]
gi|317109249|gb|ADU91995.1| DNA ligase [Taylorella equigenitalis MCE9]
Length = 681
Score = 34.3 bits (77), Expect = 6.2, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 22/46 (47%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H K YY DNP +D YD + +L ++ PE D P VG
Sbjct: 19 HDKAYYIDDNPQISDEEYDGLMRKLLDYEQAHPEWVTSDSPSQRVG 64
>gi|327470726|gb|EGF16182.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK330]
Length = 652
Score = 34.3 bits (77), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV++ + YY D P +D YDR+ L L+E++P D P + VG
Sbjct: 8 LVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDILPDSPTHRVG 60
>gi|325690880|gb|EGD32881.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK115]
Length = 652
Score = 34.3 bits (77), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV++ + YY D P +D YDR+ L L+E++P D P + VG
Sbjct: 8 LVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDILPDSPTHRVG 60
>gi|323351288|ref|ZP_08086944.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis VMC66]
gi|322122512|gb|EFX94223.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis VMC66]
Length = 652
Score = 34.3 bits (77), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV++ + YY D P +D YDR+ L L+E++P D P + VG
Sbjct: 8 LVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDILPDSPTHRVG 60
>gi|303228999|ref|ZP_07315809.1| DNA ligase (NAD+) [Veillonella atypica ACS-134-V-Col7a]
gi|302516413|gb|EFL58345.1| DNA ligase (NAD+) [Veillonella atypica ACS-134-V-Col7a]
Length = 666
Score = 34.3 bits (77), Expect = 6.2, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 24/56 (42%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+E L K H Q YY DNP +D YD+ L L+ PE P VG
Sbjct: 7 IEQLQKELTHAQYLYYVKDNPTMSDFEYDQKYRELVDLETSHPEYIVPSSPTQRVG 62
>gi|324993931|gb|EGC25850.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK405]
gi|324994750|gb|EGC26663.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK678]
gi|327463193|gb|EGF09514.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK1]
Length = 652
Score = 34.3 bits (77), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV++ + YY D P +D YDR+ L L+E++P D P + VG
Sbjct: 8 LVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDILPDSPTHRVG 60
>gi|324991571|gb|EGC23504.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK353]
Length = 652
Score = 34.3 bits (77), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV++ + YY D P +D YDR+ L L+E++P D P + VG
Sbjct: 8 LVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDILPDSPTHRVG 60
>gi|153956080|ref|YP_001396845.1| DNA ligase [Clostridium kluyveri DSM 555]
gi|146348938|gb|EDK35474.1| DNA ligase [Clostridium kluyveri DSM 555]
Length = 60
Score = 34.3 bits (77), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY D TD YD++S +L L++++PE +D P VG
Sbjct: 16 YYNKDESEITDHEYDKLSLKLRKLEKEYPEYARKDSPTQKVG 57
>gi|27468507|ref|NP_765144.1| DNA ligase [Staphylococcus epidermidis ATCC 12228]
gi|81843559|sp|Q8CRU0|DNLJ_STAES RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|27316054|gb|AAO05188.1|AE016749_134 DNA ligase [Staphylococcus epidermidis ATCC 12228]
Length = 665
Score = 33.9 bits (76), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY DNP D YD++ L ++E++PE D P VG
Sbjct: 22 YYVQDNPSVPDSEYDKLLHELIEIEEKYPEFKSTDSPTVRVG 63
>gi|251809892|ref|ZP_04824365.1| DNA ligase, NAD-dependent [Staphylococcus epidermidis BCM-HMP0060]
gi|282874546|ref|ZP_06283431.1| DNA ligase (NAD(+)) [Staphylococcus epidermidis SK135]
gi|293367782|ref|ZP_06614431.1| DNA ligase [Staphylococcus epidermidis M23864:W2(grey)]
gi|251806557|gb|EES59214.1| DNA ligase, NAD-dependent [Staphylococcus epidermidis BCM-HMP0060]
gi|281296685|gb|EFA89194.1| DNA ligase (NAD(+)) [Staphylococcus epidermidis SK135]
gi|291318121|gb|EFE58518.1| DNA ligase [Staphylococcus epidermidis M23864:W2(grey)]
gi|329734727|gb|EGG71033.1| DNA ligase (NAD+) [Staphylococcus epidermidis VCU045]
gi|329734798|gb|EGG71103.1| DNA ligase (NAD+) [Staphylococcus epidermidis VCU028]
Length = 665
Score = 33.9 bits (76), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY DNP D YD++ L ++E++PE D P VG
Sbjct: 22 YYVQDNPSVPDSEYDKLLHELIEIEEKYPEFKSTDSPTVRVG 63
>gi|319399869|gb|EFV88116.1| DNA ligase, NAD-dependent [Staphylococcus epidermidis FRI909]
Length = 665
Score = 33.9 bits (76), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY DNP D YD++ L ++E++PE D P VG
Sbjct: 22 YYVQDNPSVPDSEYDKLLHELIEIEEKYPEFKSTDSPTVRVG 63
>gi|57867376|ref|YP_189011.1| DNA ligase, NAD-dependent [Staphylococcus epidermidis RP62A]
gi|81674000|sp|Q5HN30|DNLJ_STAEQ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|57638034|gb|AAW54822.1| DNA ligase, NAD-dependent [Staphylococcus epidermidis RP62A]
Length = 665
Score = 33.9 bits (76), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY DNP D YD++ L ++E++PE D P VG
Sbjct: 22 YYVQDNPSVPDSEYDKLLHELIEIEEKYPEFKSTDSPTVRVG 63
>gi|242241743|ref|ZP_04796188.1| DNA ligase [Staphylococcus epidermidis W23144]
gi|242234833|gb|EES37144.1| DNA ligase [Staphylococcus epidermidis W23144]
Length = 665
Score = 33.9 bits (76), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY DNP D YD++ L ++E++PE D P VG
Sbjct: 22 YYVQDNPSVPDSEYDKLLHELIEIEEKYPEFKSTDSPTVRVG 63
>gi|227540068|ref|ZP_03970117.1| DNA ligase (NAD(+)) [Sphingobacterium spiritivorum ATCC 33300]
gi|227240084|gb|EEI90099.1| DNA ligase (NAD(+)) [Sphingobacterium spiritivorum ATCC 33300]
Length = 673
Score = 33.9 bits (76), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H+ YY L L +D +D+ + L+AL+ Q+P+ D + P VG
Sbjct: 19 HYNYQYYVLAQSLISDYDFDQKLKELEALESQYPQFADPNSPTRRVG 65
>gi|89891625|ref|ZP_01203129.1| DNA ligase [Flavobacteria bacterium BBFL7]
gi|89516172|gb|EAS18835.1| DNA ligase [Flavobacteria bacterium BBFL7]
Length = 684
Score = 33.9 bits (76), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY DNP +D +D+ E+L L+ PE +D P VG
Sbjct: 17 HNYNYYVNDNPTISDFEFDKKLEQLKTLEAAHPEFYDATSPSVRVG 62
>gi|297538570|ref|YP_003674339.1| DNA ligase, NAD-dependent [Methylotenera sp. 301]
gi|297257917|gb|ADI29762.1| DNA ligase, NAD-dependent [Methylotenera sp. 301]
Length = 682
Score = 33.9 bits (76), Expect = 7.3, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 27/65 (41%)
Query: 53 SLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDH 112
SL + + + L ++ + YY LD P D YD V L ++ Q P L D
Sbjct: 13 SLGQPNLALRCQQLRQLIAQYDHEYYVLDAPSVPDSEYDLVYRDLQDIERQHPNLITPDS 72
Query: 113 PWNTV 117
P V
Sbjct: 73 PTQRV 77
>gi|51473890|ref|YP_067647.1| NAD-dependent DNA ligase LigA [Rickettsia typhi str. Wilmington]
gi|81389976|sp|Q68W27|DNLJ_RICTY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|51460202|gb|AAU04165.1| DNA joinase [Rickettsia typhi str. Wilmington]
Length = 693
Score = 33.9 bits (76), Expect = 7.3, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 49 KKVTSLSKGEAMIEVEYLV-KIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
+ + +S+ EA +E L KIA+++ YY DNPL +D YD++ L+ FP L
Sbjct: 2 QNIDLISEKEAKKLLEELADKIAMYNHA-YYIEDNPLVSDSEYDQLFNLNLKLENTFPHL 60
Query: 108 FDEDHPWNTVG 118
+ P +G
Sbjct: 61 VLSNSPSKKIG 71
>gi|330879787|gb|EGH13936.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. glycinea
str. race 4]
Length = 347
Score = 33.9 bits (76), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 22/46 (47%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H Y+ LD P D YDR+ L AL+ + P L D P VG
Sbjct: 18 HNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLVTPDSPTQRVG 63
>gi|300771799|ref|ZP_07081670.1| NAD-dependent DNA ligase LigA [Sphingobacterium spiritivorum ATCC
33861]
gi|300761185|gb|EFK58010.1| NAD-dependent DNA ligase LigA [Sphingobacterium spiritivorum ATCC
33861]
Length = 673
Score = 33.9 bits (76), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H+ YY L L +D +D+ + L+AL+ Q+P+ D + P VG
Sbjct: 19 HYNYQYYVLAQSLISDYDFDQKLKELEALESQYPQFADPNSPTRRVG 65
>gi|329726878|gb|EGG63336.1| DNA ligase (NAD+) [Staphylococcus epidermidis VCU144]
Length = 665
Score = 33.9 bits (76), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY DNP D YD++ L ++E++PE D P VG
Sbjct: 22 YYVQDNPSVPDNEYDKLLHELIEIEEKYPEFKSTDSPTVRVG 63
>gi|303231514|ref|ZP_07318244.1| DNA ligase (NAD+) [Veillonella atypica ACS-049-V-Sch6]
gi|302513857|gb|EFL55869.1| DNA ligase (NAD+) [Veillonella atypica ACS-049-V-Sch6]
Length = 666
Score = 33.9 bits (76), Expect = 7.4, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 24/56 (42%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+E L K H Q YY DNP +D YD+ L L+ PE P VG
Sbjct: 7 IEQLQKELTHAQYLYYVKDNPTMSDFEYDQKYRELVDLETAHPEYIVPSSPTQRVG 62
>gi|282856148|ref|ZP_06265431.1| DNA ligase (NAD(+)) [Pyramidobacter piscolens W5455]
gi|282585907|gb|EFB91192.1| DNA ligase (NAD(+)) [Pyramidobacter piscolens W5455]
Length = 681
Score = 33.9 bits (76), Expect = 7.8, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 65 YLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+LV H + YY LD P D YD + + + + P+L +D P VG
Sbjct: 14 WLVDELNRHGRLYYVLDAPEIEDDEYDALMREMLQFEREHPDLIRDDSPSKRVG 67
>gi|148925946|ref|ZP_01809633.1| DNA ligase [Campylobacter jejuni subsp. jejuni CG8486]
gi|145844932|gb|EDK22036.1| DNA ligase [Campylobacter jejuni subsp. jejuni CG8486]
Length = 647
Score = 33.9 bits (76), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 64 EYLVKIALHH--QKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
EYL K+AL + + YY D PL +D YD + L +EQ + +D P +
Sbjct: 5 EYLEKVALANLWMRAYYEKDEPLASDEEYDALIRELSVFEEQNKDEISKDSPTQKIA 61
>gi|86153540|ref|ZP_01071744.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni
HB93-13]
gi|85843266|gb|EAQ60477.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni
HB93-13]
Length = 647
Score = 33.9 bits (76), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 64 EYLVKIALHH--QKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
EYL K+AL + + YY D PL +D YD + L +EQ + +D P +
Sbjct: 5 EYLEKVALANLWMRAYYEKDEPLASDEEYDALIRELSVFEEQNKDEISKDSPTQKIA 61
>gi|188585101|ref|YP_001916646.1| DNA ligase, NAD-dependent [Natranaerobius thermophilus JW/NM-WN-LF]
gi|254781378|sp|B2A5W5|DNLJ_NATTJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|179349788|gb|ACB84058.1| DNA ligase, NAD-dependent [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 663
Score = 33.9 bits (76), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+VE L + +H YY LD P +D +D + L L++ +PE D P VG
Sbjct: 8 KVEALREKIEYHNHRYYVLDAPEISDQEFDALMNELIELEQTYPEYQSPDSPSQRVG 64
>gi|315637028|ref|ZP_07892251.1| NAD-dependent DNA ligase LigA [Arcobacter butzleri JV22]
gi|315478564|gb|EFU69274.1| NAD-dependent DNA ligase LigA [Arcobacter butzleri JV22]
Length = 648
Score = 33.9 bits (76), Expect = 8.2, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++K E + +E L+ A YY DNP+ TD YD+++ A +++ P+L + P
Sbjct: 1 MTKEEYDLNIEKLISWA----NAYYVFDNPIATDEEYDKLARLCLAYEQENPKLSHPNSP 56
Query: 114 WNTVG 118
VG
Sbjct: 57 NKRVG 61
>gi|71892277|ref|YP_278011.1| DNA ligase [Candidatus Blochmannia pennsylvanicus str. BPEN]
gi|123747814|sp|Q492G5|DNLJ_BLOPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|71796383|gb|AAZ41134.1| DNA ligase [Candidatus Blochmannia pennsylvanicus str. BPEN]
Length = 595
Score = 33.9 bits (76), Expect = 8.2, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 29/57 (50%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L K H + YY + +D YD + E+L+ L++ +P L E P +G
Sbjct: 7 KIQKLRKKLRHWEYLYYTKNESAVSDEKYDAMLEKLNQLEQIYPHLIAESSPTQRIG 63
>gi|262199205|ref|YP_003270414.1| DNA ligase, NAD-dependent [Haliangium ochraceum DSM 14365]
gi|262082552|gb|ACY18521.1| DNA ligase, NAD-dependent [Haliangium ochraceum DSM 14365]
Length = 751
Score = 33.9 bits (76), Expect = 8.3, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 32/66 (48%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+S A E LV H + YY P+ +D YD++ ++L A++E+ P E P
Sbjct: 1 MSDDTARAEYLGLVDELSDHDRRYYVEAEPIISDVEYDKLLKKLRAIEEEHPAWVVEWSP 60
Query: 114 WNTVGY 119
VG+
Sbjct: 61 TQRVGH 66
>gi|227893041|ref|ZP_04010846.1| DNA ligase [Lactobacillus ultunensis DSM 16047]
gi|227865154|gb|EEJ72575.1| DNA ligase [Lactobacillus ultunensis DSM 16047]
Length = 667
Score = 33.9 bits (76), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY D P D +YD+ RL L+ QFPE+ D VG
Sbjct: 27 YYSKDAPEVEDNVYDQSYNRLLELERQFPEIVTPDSITQRVG 68
>gi|157737313|ref|YP_001489996.1| NAD-dependent DNA ligase LigA [Arcobacter butzleri RM4018]
gi|166215390|sp|A8ETQ3|DNLJ_ARCB4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|157699167|gb|ABV67327.1| DNA ligase [Arcobacter butzleri RM4018]
Length = 648
Score = 33.9 bits (76), Expect = 8.3, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++K E + +E L+ A YY DNP+ TD YD+++ A +++ P+L + P
Sbjct: 1 MTKEEYDLNIEKLISWA----NAYYVFDNPIATDEEYDKLARLCLAYEQENPKLSHPNSP 56
Query: 114 WNTVG 118
VG
Sbjct: 57 NKRVG 61
>gi|229587518|ref|YP_002860556.1| hypothetical protein CLJ_0249 [Clostridium botulinum Ba4 str. 657]
gi|229260200|gb|ACQ51237.1| hypothetical protein CLJ_0249 [Clostridium botulinum Ba4 str. 657]
Length = 125
Score = 33.9 bits (76), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 70 ALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
L H YYRL++ L D YD+ + L+ LQ+ +P+L ++
Sbjct: 44 VLVHSCTYYRLNDSLIDDYTYDKWARELENLQDMYPDLLED 84
>gi|305667253|ref|YP_003863540.1| DNA ligase [Maribacter sp. HTCC2170]
gi|88708187|gb|EAR00425.1| DNA ligase [Maribacter sp. HTCC2170]
Length = 664
Score = 33.9 bits (76), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY LDNP +D +D + L L+ + PE +D P VG
Sbjct: 17 HNHNYYVLDNPTISDYDFDMKLKELQELEAKHPEFYDATSPTLRVG 62
>gi|91205008|ref|YP_537363.1| NAD-dependent DNA ligase LigA [Rickettsia bellii RML369-C]
gi|122990942|sp|Q1RK40|DNLJ_RICBR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|91068552|gb|ABE04274.1| DNA ligase, NAD-dependent [Rickettsia bellii RML369-C]
Length = 689
Score = 33.5 bits (75), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+E KIA ++ +Y D PL +D YD++ L+++FP L E+ P +G
Sbjct: 17 IELADKIAQYNHAYYIE-DKPLVSDAEYDQLFNTNLKLEQKFPHLILENSPSKKIG 71
>gi|78188256|ref|YP_378594.1| NAD-dependent DNA ligase [Chlorobium chlorochromatii CaD3]
gi|123743484|sp|Q3ATX4|DNLJ_CHLCH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|78170455|gb|ABB27551.1| NAD-dependent DNA ligase [Chlorobium chlorochromatii CaD3]
Length = 667
Score = 33.5 bits (75), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H Y+ P +D +D++ E L AL+ +FP+L D P VG
Sbjct: 20 HNYLYFNEAKPELSDYEFDKLLEELMALEREFPDLLTPDSPSQRVG 65
>gi|157827661|ref|YP_001496725.1| NAD-dependent DNA ligase LigA [Rickettsia bellii OSU 85-389]
gi|166216232|sp|A8GXT8|DNLJ_RICB8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|157802965|gb|ABV79688.1| NAD-dependent DNA ligase LigA [Rickettsia bellii OSU 85-389]
Length = 689
Score = 33.5 bits (75), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+E KIA ++ +Y D PL +D YD++ L+++FP L E+ P +G
Sbjct: 17 IELADKIAQYNHAYYIE-DKPLVSDAEYDQLFNTNLKLEQKFPHLILENSPSKKIG 71
>gi|172056504|ref|YP_001812964.1| DNA ligase, NAD-dependent [Exiguobacterium sibiricum 255-15]
gi|254781332|sp|B1YJ17|DNLJ_EXIS2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|171989025|gb|ACB59947.1| DNA ligase, NAD-dependent [Exiguobacterium sibiricum 255-15]
Length = 664
Score = 33.5 bits (75), Expect = 9.4, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 19/42 (45%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY D P D YD++ L L+ PEL D P VG
Sbjct: 21 YYVQDQPTVPDSTYDQLLRELTELETAHPELITPDSPTQRVG 62
>gi|283954134|ref|ZP_06371659.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni 414]
gi|283794413|gb|EFC33157.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni 414]
Length = 647
Score = 33.5 bits (75), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 64 EYLVKIALHHQ--KWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
EYL K+AL + + YY D PL +D YD + L A +EQ + +D P +
Sbjct: 5 EYLEKVALANSWMRAYYEKDEPLASDEEYDALIRELRAFEEQNKDEILKDSPTQKIA 61
>gi|162448184|ref|YP_001621316.1| DNA ligase [Acholeplasma laidlawii PG-8A]
gi|190359222|sp|A9NHW0|DNLJ_ACHLI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|161986291|gb|ABX81940.1| DNA ligase, NAD-dependent [Acholeplasma laidlawii PG-8A]
Length = 659
Score = 33.5 bits (75), Expect = 9.6, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
Y+ D P+ +D +YD + L L+ ++PE DE P +G
Sbjct: 21 YHTKDQPIISDFVYDGLMRELIELETKYPEYDDETSPTKKIG 62
>gi|163841673|ref|YP_001626078.1| NAD-dependent DNA ligase [Renibacterium salmoninarum ATCC 33209]
gi|190359277|sp|A9WTZ3|DNLJ_RENSM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|162955149|gb|ABY24664.1| NAD-dependent DNA ligase [Renibacterium salmoninarum ATCC 33209]
Length = 758
Score = 33.5 bits (75), Expect = 9.7, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 27/57 (47%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E LV+ H++ YY L +D +D + RL+ ++ PEL D P VG
Sbjct: 35 EYSKLVEDIRHYRFAYYNEAESLVSDAEFDVLFRRLEEIEALHPELISNDSPTQEVG 91
>gi|220904693|ref|YP_002480005.1| DNA ligase, NAD-dependent [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
gi|254781312|sp|B8J0Q0|DNLJ_DESDA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|219868992|gb|ACL49327.1| DNA ligase, NAD-dependent [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
Length = 712
Score = 33.5 bits (75), Expect = 10.0, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 28/62 (45%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
GE V++L H Y+ LD P +D +D + L L+ ++PEL P
Sbjct: 23 GEERRRVQWLTAELERHNHLYHTLDRPEISDDQFDALFRELQDLETRWPELRSLHSPTLR 82
Query: 117 VG 118
VG
Sbjct: 83 VG 84
>gi|149372321|ref|ZP_01891509.1| putative DNA ligase [unidentified eubacterium SCB49]
gi|149354711|gb|EDM43274.1| putative DNA ligase [unidentified eubacterium SCB49]
Length = 677
Score = 33.5 bits (75), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LDN +D +D+ + L L++ PE FD + P VG
Sbjct: 21 YYVLDNATVSDFEFDQKLKELQQLEDAHPEYFDANSPTQRVG 62
>gi|94988258|ref|YP_596359.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS9429]
gi|94992132|ref|YP_600231.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS2096]
gi|122986939|sp|Q1JCM1|DNLJ_STRPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|123080420|sp|Q1JMJ7|DNLJ_STRPC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|94541766|gb|ABF31815.1| NAD-dependent DNA ligase [Streptococcus pyogenes MGAS9429]
gi|94545640|gb|ABF35687.1| NAD-dependent DNA ligase [Streptococcus pyogenes MGAS2096]
Length = 652
Score = 33.5 bits (75), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY D P +D YD++ L L++ +PE +D P VG
Sbjct: 19 YYTKDAPSVSDSDYDKLYRELVTLEQSYPEYVLQDSPTQQVG 60
Searching..................................................done
Results from round 2
>gi|254781196|ref|YP_003065609.1| DNA ligase, NAD-dependent [Candidatus Liberibacter asiaticus str.
psy62]
gi|254040873|gb|ACT57669.1| DNA ligase, NAD-dependent [Candidatus Liberibacter asiaticus str.
psy62]
Length = 119
Score = 191 bits (487), Expect = 2e-47, Method: Composition-based stats.
Identities = 119/119 (100%), Positives = 119/119 (100%)
Query: 1 MYNFDRVFRSSKFENEHNITPAQWKKLLTLEAKFLPNKRALESWLDKAKKVTSLSKGEAM 60
MYNFDRVFRSSKFENEHNITPAQWKKLLTLEAKFLPNKRALESWLDKAKKVTSLSKGEAM
Sbjct: 1 MYNFDRVFRSSKFENEHNITPAQWKKLLTLEAKFLPNKRALESWLDKAKKVTSLSKGEAM 60
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY
Sbjct: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
>gi|254780131|ref|YP_003064544.1| DNA ligase, NAD-dependent [Candidatus Liberibacter asiaticus str.
psy62]
gi|254039808|gb|ACT56604.1| DNA ligase, NAD-dependent [Candidatus Liberibacter asiaticus str.
psy62]
gi|317120701|gb|ADV02524.1| DNA ligase [Liberibacter phage SC1]
gi|317120744|gb|ADV02566.1| DNA ligase [Liberibacter phage SC2]
gi|317120758|gb|ADV02579.1| DNA ligase [Liberibacter phage SC2]
gi|317120805|gb|ADV02626.1| DNA ligase [Liberibacter phage SC1]
gi|317120845|gb|ADV02666.1| DNA ligase [Candidatus Liberibacter asiaticus]
Length = 119
Score = 190 bits (484), Expect = 4e-47, Method: Composition-based stats.
Identities = 118/119 (99%), Positives = 119/119 (100%)
Query: 1 MYNFDRVFRSSKFENEHNITPAQWKKLLTLEAKFLPNKRALESWLDKAKKVTSLSKGEAM 60
MYNFDRVFRSSKFENEHNITPAQWKKLLTLEAKFLPNKRALESWLDKAKKVTSLSKGEAM
Sbjct: 1 MYNFDRVFRSSKFENEHNITPAQWKKLLTLEAKFLPNKRALESWLDKAKKVTSLSKGEAM 60
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
IEVEYLVKIALHHQKWYYRLD+PLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY
Sbjct: 61 IEVEYLVKIALHHQKWYYRLDDPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
>gi|1352292|sp|P49421|DNLJ_RHOMR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|607820|gb|AAA93198.1| DNA ligase [Rhodothermus marinus]
Length = 712
Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 29 TLEAKFLPNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDG 88
T EA+ L L + + + + ++ + EA L ++ H YY LDNPL D
Sbjct: 9 TAEARLLEATHTLLQTV-RQRDLEAIDRKEAEALAARLREVLNQHAYRYYVLDNPLIPDA 67
Query: 89 LYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YD + + L L+ +FPEL D P VG
Sbjct: 68 DYDLLMQALRKLEARFPELVTPDSPTQRVG 97
>gi|268316781|ref|YP_003290500.1| DNA ligase, NAD-dependent [Rhodothermus marinus DSM 4252]
gi|262334315|gb|ACY48112.1| DNA ligase, NAD-dependent [Rhodothermus marinus DSM 4252]
Length = 712
Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 29 TLEAKFLPNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDG 88
T EA+ L L + + + + ++ + EA L ++ H YY LDNPL D
Sbjct: 9 TAEARLLEATHTLLQTV-RQRDLEAIDRKEAEALAARLREVLNQHAYRYYVLDNPLIPDA 67
Query: 89 LYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YD + + L L+ +FPEL D P VG
Sbjct: 68 DYDLLMQALRKLEARFPELVTPDSPTQRVG 97
>gi|86358438|ref|YP_470330.1| NAD-dependent DNA ligase LigA [Rhizobium etli CFN 42]
gi|123738303|sp|Q2K6D3|DNLJ_RHIEC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|86282540|gb|ABC91603.1| DNA ligase (NAD+) protein [Rhizobium etli CFN 42]
Length = 718
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 38/72 (52%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
+ V +L+ EA E+E L + HH Y+ D P +D YD + R DAL+ +FPE
Sbjct: 4 EGSAVETLTIEEAAAELERLAREIAHHDALYHGKDQPEISDADYDALKRRNDALEARFPE 63
Query: 107 LFDEDHPWNTVG 118
L ED P VG
Sbjct: 64 LIREDSPSRRVG 75
>gi|13471538|ref|NP_103104.1| DNA ligase [Mesorhizobium loti MAFF303099]
gi|75543387|sp|Q98KC4|DNLJ_RHILO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|14022280|dbj|BAB48890.1| DNA ligase [Mesorhizobium loti MAFF303099]
Length = 734
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 38/70 (54%)
Query: 49 KKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF 108
K V SLS+ EA E++ L + H + Y+ D P TD YD + R A++E+FP L
Sbjct: 4 KPVDSLSESEAEAELKRLAEEIAGHDRRYHAEDAPTITDAEYDALRRRNLAIEERFPGLV 63
Query: 109 DEDHPWNTVG 118
ED P VG
Sbjct: 64 REDSPSRRVG 73
>gi|85708859|ref|ZP_01039925.1| DNA ligase [Erythrobacter sp. NAP1]
gi|85690393|gb|EAQ30396.1| DNA ligase [Erythrobacter sp. NAP1]
Length = 698
Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 41/78 (52%)
Query: 42 ESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQ 101
ES A V+ +S+ +A E+ L K HH + Y+ D+P +D YD + R L+
Sbjct: 5 ESAEVSANPVSQMSEADAANELMRLAKQIAHHDRLYHADDDPEISDQEYDALVRRNRELE 64
Query: 102 EQFPELFDEDHPWNTVGY 119
E FP+L ED P VG+
Sbjct: 65 EAFPQLVREDSPSKRVGH 82
>gi|190892570|ref|YP_001979112.1| DNA ligase (NAD+) protein [Rhizobium etli CIAT 652]
gi|254781398|sp|B3PTU7|DNLJ_RHIE6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|190697849|gb|ACE91934.1| DNA ligase (NAD+) protein [Rhizobium etli CIAT 652]
Length = 718
Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 38/72 (52%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
+ V +L+ EA E+E L K HH Y+ D P +D YD + R DAL+ +FPE
Sbjct: 4 EGSAVDTLTIEEAAAELERLAKEIAHHDALYHGKDQPEISDADYDALKRRNDALEARFPE 63
Query: 107 LFDEDHPWNTVG 118
L ED P VG
Sbjct: 64 LIREDSPSRHVG 75
>gi|154252874|ref|YP_001413698.1| DNA ligase, NAD-dependent [Parvibaculum lavamentivorans DS-1]
gi|190359267|sp|A7HVV8|DNLJ_PARL1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|154156824|gb|ABS64041.1| DNA ligase, NAD-dependent [Parvibaculum lavamentivorans DS-1]
Length = 710
Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 38/71 (53%)
Query: 48 AKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
K V L+ EA E+E L H K YY+ D P +D YD + R +A++ ++PEL
Sbjct: 14 QKDVDHLTLEEAPEELERLAAEIEKHDKLYYQKDAPRISDAEYDTLRRRNEAIEARYPEL 73
Query: 108 FDEDHPWNTVG 118
ED P + VG
Sbjct: 74 VREDSPSHRVG 84
>gi|92116846|ref|YP_576575.1| DNA ligase, NAD-dependent [Nitrobacter hamburgensis X14]
gi|123083742|sp|Q1QNT2|DNLJ_NITHX RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|91799740|gb|ABE62115.1| DNA ligase, NAD-dependent [Nitrobacter hamburgensis X14]
Length = 714
Score = 120 bits (301), Expect = 6e-26, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 40/72 (55%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
V SL++ +A IE + L H + YY+ D P +D YD + +RL+A++ +FP+
Sbjct: 7 TPPPVDSLTRAQAKIEHKRLALEIETHNERYYQKDAPTVSDAAYDALRQRLEAIEARFPD 66
Query: 107 LFDEDHPWNTVG 118
L + P TVG
Sbjct: 67 LITANSPTQTVG 78
>gi|316933200|ref|YP_004108182.1| NAD-dependent DNA ligase [Rhodopseudomonas palustris DX-1]
gi|315600914|gb|ADU43449.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris DX-1]
Length = 715
Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 42/73 (57%)
Query: 46 DKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFP 105
+ A + +L+K +A +E+ L + H K YY+ D P +D YD + RL+A++++FP
Sbjct: 6 NPAPDIATLTKAKAKVELMRLRLVIEGHDKAYYQDDAPKISDADYDALRRRLEAIEQKFP 65
Query: 106 ELFDEDHPWNTVG 118
EL P TVG
Sbjct: 66 ELVSASSPTQTVG 78
>gi|260462100|ref|ZP_05810344.1| DNA ligase, NAD-dependent [Mesorhizobium opportunistum WSM2075]
gi|259031960|gb|EEW33227.1| DNA ligase, NAD-dependent [Mesorhizobium opportunistum WSM2075]
Length = 734
Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 38/70 (54%)
Query: 49 KKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF 108
K V SLS+ EA E++ L + H + Y+ D P TD YD + R A++E+FP L
Sbjct: 4 KPVDSLSESEAEAELQRLAEEIAEHDRRYHTEDAPTITDAEYDALRRRNLAIEERFPGLV 63
Query: 109 DEDHPWNTVG 118
ED P VG
Sbjct: 64 REDSPSLRVG 73
>gi|206895761|ref|YP_002246502.1| DNA ligase, NAD-dependent [Coprothermobacter proteolyticus DSM
5265]
gi|254781298|sp|B5Y6V5|DNLJ_COPPD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|206738378|gb|ACI17456.1| DNA ligase, NAD-dependent [Coprothermobacter proteolyticus DSM
5265]
Length = 666
Score = 119 bits (300), Expect = 9e-26, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 36/65 (55%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+++ EA +E L ++ +H YY LD+P +D YD++ L L++QFPE D P
Sbjct: 1 MTREEAKKRIERLRELIEYHNYRYYVLDSPEISDEEYDKLYRELVTLEKQFPEFITPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|209550159|ref|YP_002282076.1| NAD-dependent DNA ligase LigA [Rhizobium leguminosarum bv. trifolii
WSM2304]
gi|254781399|sp|B5ZWH9|DNLJ_RHILW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|209535915|gb|ACI55850.1| DNA ligase, NAD-dependent [Rhizobium leguminosarum bv. trifolii
WSM2304]
Length = 718
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 38/72 (52%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
+ V +L+ EA E+E L K HH Y+ D P +D YD + R DAL+ QFPE
Sbjct: 4 EGSAVDTLTIEEAAAELERLAKEIAHHDALYHGKDRPQISDADYDALKRRNDALEVQFPE 63
Query: 107 LFDEDHPWNTVG 118
L ED P VG
Sbjct: 64 LIREDSPSRRVG 75
>gi|241205543|ref|YP_002976639.1| NAD-dependent DNA ligase LigA [Rhizobium leguminosarum bv. trifolii
WSM1325]
gi|240859433|gb|ACS57100.1| DNA ligase, NAD-dependent [Rhizobium leguminosarum bv. trifolii
WSM1325]
Length = 718
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 39/72 (54%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
++ V +L+ EA E+E L K HH Y+ D P +D YD + R DAL+ +FPE
Sbjct: 4 ESSAVDTLTIEEAAAELERLAKEIAHHDALYHGKDRPEISDADYDALKRRNDALEVRFPE 63
Query: 107 LFDEDHPWNTVG 118
L ED P VG
Sbjct: 64 LIREDSPSRHVG 75
>gi|327194610|gb|EGE61460.1| DNA ligase (NAD+) protein [Rhizobium etli CNPAF512]
Length = 718
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 38/72 (52%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
+ V +L+ EA E+E L K HH Y+ D P +D YD + R DAL+ +FPE
Sbjct: 4 EGSAVDTLTIEEAAAELERLAKEIAHHDSLYHGKDQPEISDADYDALKRRNDALEVRFPE 63
Query: 107 LFDEDHPWNTVG 118
L ED P VG
Sbjct: 64 LIREDSPSRHVG 75
>gi|319782858|ref|YP_004142334.1| DNA ligase, NAD-dependent [Mesorhizobium ciceri biovar biserrulae
WSM1271]
gi|317168746|gb|ADV12284.1| DNA ligase, NAD-dependent [Mesorhizobium ciceri biovar biserrulae
WSM1271]
Length = 734
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 40/70 (57%)
Query: 49 KKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF 108
K V SLS+ EA E++ L + H + Y+ D P+ TD YD ++ R A++E+FP L
Sbjct: 4 KPVDSLSESEAEAELKRLAEEIAEHDRRYHTEDAPVITDAEYDALARRNLAIEERFPALV 63
Query: 109 DEDHPWNTVG 118
ED P VG
Sbjct: 64 REDSPSLRVG 73
>gi|114705256|ref|ZP_01438164.1| DNA ligase, NAD-dependent [Fulvimarina pelagi HTCC2506]
gi|114540041|gb|EAU43161.1| DNA ligase, NAD-dependent [Fulvimarina pelagi HTCC2506]
Length = 821
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 34/70 (48%)
Query: 49 KKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF 108
V +L + EA E+E L + H + YY D P +D YD + R A++ +FP L
Sbjct: 4 TPVENLDETEAASELERLAREIAEHDRAYYGDDAPTLSDADYDALRRRNTAIEARFPALI 63
Query: 109 DEDHPWNTVG 118
D P VG
Sbjct: 64 RADSPSKRVG 73
>gi|86749131|ref|YP_485627.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris HaA2]
gi|123004307|sp|Q2IYJ4|DNLJ_RHOP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|86572159|gb|ABD06716.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris HaA2]
Length = 714
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 37/72 (51%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
A + +L+K +A +E L H YY+ D P +D YD + RL+A++ +FPE
Sbjct: 7 PAPDIATLTKAKAKVEAMRLRLEIERHNSAYYQHDAPTVSDAEYDALRRRLEAIEAKFPE 66
Query: 107 LFDEDHPWNTVG 118
L P TVG
Sbjct: 67 LVSASSPTQTVG 78
>gi|218678588|ref|ZP_03526485.1| NAD-dependent DNA ligase LigA [Rhizobium etli CIAT 894]
Length = 264
Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 38/72 (52%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
+ V +L+ EA E+E L K HH Y+ D P +D YD + R DAL+ +FPE
Sbjct: 4 EGSAVDTLTIEEAAAELERLAKEIAHHDALYHGKDQPEISDADYDALKRRNDALEVRFPE 63
Query: 107 LFDEDHPWNTVG 118
L ED P VG
Sbjct: 64 LIREDSPSRRVG 75
>gi|153009084|ref|YP_001370299.1| NAD-dependent DNA ligase LigA [Ochrobactrum anthropi ATCC 49188]
gi|166216221|sp|A6WZR6|DNLJ_OCHA4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|151560972|gb|ABS14470.1| DNA ligase, NAD-dependent [Ochrobactrum anthropi ATCC 49188]
Length = 721
Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 37/70 (52%)
Query: 49 KKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF 108
V L++ EA+ E+E L + HH + Y+ D P +D YD + R DA++ +FP L
Sbjct: 4 TPVEKLTEPEAVSELERLAREIAHHDELYHANDRPEISDAEYDALKRRNDAIEARFPHLV 63
Query: 109 DEDHPWNTVG 118
D P VG
Sbjct: 64 RTDSPSLRVG 73
>gi|90418183|ref|ZP_01226095.1| DNA ligase [Aurantimonas manganoxydans SI85-9A1]
gi|90337855|gb|EAS51506.1| DNA ligase [Aurantimonas manganoxydans SI85-9A1]
Length = 703
Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 37/70 (52%)
Query: 49 KKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF 108
K V +L + EA E+E L H + YYR D P TD YD + R A++ +FPEL
Sbjct: 4 KAVETLDRDEAAAELERLAGEIAAHDRAYYREDAPTVTDAEYDTLRRRNAAIEARFPELI 63
Query: 109 DEDHPWNTVG 118
ED P VG
Sbjct: 64 REDSPSARVG 73
>gi|192292401|ref|YP_001993006.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris TIE-1]
gi|254781404|sp|B3QFL8|DNLJ_RHOPT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|192286150|gb|ACF02531.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris TIE-1]
Length = 715
Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 41/72 (56%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
A + +L+K +A +E+ L H K YY+ D P +D YD + RL+A++++FPE
Sbjct: 7 PAPDIATLTKPKAKVELMRLRLEIEGHDKAYYQDDAPKISDADYDALRRRLEAIEQKFPE 66
Query: 107 LFDEDHPWNTVG 118
L + P TVG
Sbjct: 67 LVNASSPTQTVG 78
>gi|121533514|ref|ZP_01665342.1| DNA ligase, NAD-dependent [Thermosinus carboxydivorans Nor1]
gi|121308073|gb|EAX48987.1| DNA ligase, NAD-dependent [Thermosinus carboxydivorans Nor1]
Length = 673
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 32/64 (50%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
+ +A E E L + +H YY LD P +D +D + RL A++E +P L D P
Sbjct: 8 TLEQAAREAEQLRRQIHYHNHRYYVLDAPEISDAEFDALMRRLIAIEEAYPSLITPDSPT 67
Query: 115 NTVG 118
VG
Sbjct: 68 QRVG 71
>gi|166216284|sp|Q6N423|DNLJ_RHOPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
Length = 715
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 41/72 (56%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
A + +L+K +A +E+ L H K YY+ D P +D YD + RL+A++++FPE
Sbjct: 7 PAPDIATLTKPKAKVELMRLRLEIEGHDKAYYQDDAPKISDADYDALRRRLEAIEQKFPE 66
Query: 107 LFDEDHPWNTVG 118
L + P TVG
Sbjct: 67 LVNASSPTQTVG 78
>gi|218460243|ref|ZP_03500334.1| NAD-dependent DNA ligase LigA [Rhizobium etli Kim 5]
Length = 327
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 38/72 (52%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
+ V +L+ EA E+E L K HH Y+ D P +D YD + R DAL+ +FPE
Sbjct: 4 EGSAVDTLTIEEAAAELERLAKEIAHHDALYHGKDQPEISDADYDALKRRNDALEARFPE 63
Query: 107 LFDEDHPWNTVG 118
L ED P VG
Sbjct: 64 LIREDSPSRHVG 75
>gi|115524134|ref|YP_781045.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris BisA53]
gi|115518081|gb|ABJ06065.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris BisA53]
Length = 730
Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 38 KRALESWLDKAK---KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVS 94
R++ K+K V +L+K +A +E+ L H K YY+ D P +D YD +
Sbjct: 10 SRSVLQMKSKSKTVPDVATLTKAKAKVELMRLALEIERHDKAYYQEDAPKVSDADYDALR 69
Query: 95 ERLDALQEQFPELFDEDHPWNTVG 118
RL+ ++ +FPEL P VG
Sbjct: 70 RRLEEIEHKFPELVSGASPSQKVG 93
>gi|90424785|ref|YP_533155.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris BisB18]
gi|123275077|sp|Q211V0|DNLJ_RHOPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|90106799|gb|ABD88836.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris BisB18]
Length = 795
Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 38/71 (53%)
Query: 48 AKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
+ +LSK +A +E++ L H YY+ D P +D YD + R++A++ +FPEL
Sbjct: 9 PTDLDTLSKAKAKVELKRLSLEIERHNNAYYQDDAPKISDAEYDALRHRVEAIEAKFPEL 68
Query: 108 FDEDHPWNTVG 118
D P VG
Sbjct: 69 VSSDSPTQKVG 79
>gi|169831769|ref|YP_001717751.1| NAD-dependent DNA ligase [Candidatus Desulforudis audaxviator
MP104C]
gi|254781311|sp|B1I551|DNLJ_DESAP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|169638613|gb|ACA60119.1| DNA ligase, NAD-dependent [Candidatus Desulforudis audaxviator
MP104C]
Length = 672
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 32/65 (49%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ EA E L + +H YY LD+P+ D YDR+ L AL+ +PEL D P
Sbjct: 1 MKPEEARARAEELRREIEYHDHRYYVLDDPVIEDAEYDRLVRELVALETAYPELVTPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|75675255|ref|YP_317676.1| NAD-dependent DNA ligase [Nitrobacter winogradskyi Nb-255]
gi|123773282|sp|Q3STR7|DNLJ_NITWN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|74420125|gb|ABA04324.1| NAD-dependent DNA ligase [Nitrobacter winogradskyi Nb-255]
Length = 716
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 38/72 (52%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
V SL++ +A +E + L H + YY+ D P +D YD + RL+A++ +FP+
Sbjct: 7 TPPPVDSLTRSQARVEHKRLALEIETHNERYYQQDAPTVSDATYDALQRRLEAIEARFPD 66
Query: 107 LFDEDHPWNTVG 118
L P TVG
Sbjct: 67 LVTASSPTQTVG 78
>gi|239832299|ref|ZP_04680628.1| DNA ligase, NAD-dependent [Ochrobactrum intermedium LMG 3301]
gi|239824566|gb|EEQ96134.1| DNA ligase, NAD-dependent [Ochrobactrum intermedium LMG 3301]
Length = 734
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 40/83 (48%)
Query: 36 PNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSE 95
+ A + L V L++ EA+ E+ L + HH + Y+ D P +D YD +
Sbjct: 6 ETESAGFASLMTDIPVEKLTEPEAVSELGRLAREIAHHDELYHANDRPEISDAEYDALKR 65
Query: 96 RLDALQEQFPELFDEDHPWNTVG 118
R DA++ +FP L D P VG
Sbjct: 66 RNDAIEARFPHLVRTDSPSLRVG 88
>gi|166216283|sp|Q07PR9|DNLJ_RHOP5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
Length = 715
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 39/78 (50%)
Query: 41 LESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDAL 100
++S V +L+K +A +E+ L H K YY+ D P +D YD + RL+ +
Sbjct: 1 MKSKSKTVPDVATLTKAKAKVELMRLALEIERHDKAYYQEDAPKVSDADYDALRRRLEEI 60
Query: 101 QEQFPELFDEDHPWNTVG 118
+ +FPEL P VG
Sbjct: 61 EHKFPELVSGASPSQKVG 78
>gi|218515813|ref|ZP_03512653.1| NAD-dependent DNA ligase LigA [Rhizobium etli 8C-3]
Length = 216
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 38/72 (52%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
+ V +L+ EA E+E L K HH Y+ D P +D YD + R DAL+ +FPE
Sbjct: 4 EGSAVDTLTIEEAAAELERLAKEIAHHDALYHGKDQPEISDADYDALKRRNDALEARFPE 63
Query: 107 LFDEDHPWNTVG 118
L ED P VG
Sbjct: 64 LIREDSPSRHVG 75
>gi|299131914|ref|ZP_07025109.1| DNA ligase, NAD-dependent [Afipia sp. 1NLS2]
gi|298592051|gb|EFI52251.1| DNA ligase, NAD-dependent [Afipia sp. 1NLS2]
Length = 706
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 41/70 (58%)
Query: 49 KKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF 108
V +L+K +A +E+ L H + YY+ D P +D YD++ +RL A++E+FPEL
Sbjct: 10 TPVENLTKAQAKVELTRLALEISMHDERYYQKDAPTVSDADYDKLRQRLSAIEERFPELV 69
Query: 109 DEDHPWNTVG 118
+D P VG
Sbjct: 70 AKDSPSQKVG 79
>gi|302390293|ref|YP_003826114.1| DNA ligase, NAD-dependent [Thermosediminibacter oceani DSM 16646]
gi|302200921|gb|ADL08491.1| DNA ligase, NAD-dependent [Thermosediminibacter oceani DSM 16646]
Length = 672
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 39/65 (60%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + EA ++ L ++ +H + YY DNP+ +D YD++ +L+ L++QFPEL D P
Sbjct: 1 MDRSEAEARIKELRELINYHNRQYYVYDNPVISDAEYDKLMRQLEKLEKQFPELITPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SQRVG 65
>gi|148257407|ref|YP_001241992.1| DNA ligase (polydeoxyribonucleotide synthase (NAD+))
[Bradyrhizobium sp. BTAi1]
gi|166215399|sp|A5EPJ2|DNLJ_BRASB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|146409580|gb|ABQ38086.1| DNA ligase (Polydeoxyribonucleotide synthase (NAD+))
[Bradyrhizobium sp. BTAi1]
Length = 716
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 37/72 (51%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
K V L+K +A +E + L H + YY+ D P +D YD + R +A++ +FPE
Sbjct: 9 KPVDVAELTKAQAKVEWKRLALELEVHDRLYYQDDAPKISDAEYDELRRRFNAIETRFPE 68
Query: 107 LFDEDHPWNTVG 118
L + P VG
Sbjct: 69 LVSSESPSQKVG 80
>gi|6561410|gb|AAF16907.1|AF173987_5 DNA ligase [Rhodothermus marinus DSM 4252]
Length = 154
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 29 TLEAKFLPNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDG 88
T EA+ L L + + + + ++ + EA L ++ H YY LDNPL D
Sbjct: 9 TAEARLLEATHTLLQTV-RQRDLEAIDRKEAEALAARLREVLNQHAYRYYVLDNPLIPDA 67
Query: 89 LYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YD + + L L+ +FPEL D P VG
Sbjct: 68 DYDLLMQALRKLEARFPELVTPDSPTQRVG 97
>gi|328950509|ref|YP_004367844.1| DNA ligase [Marinithermus hydrothermalis DSM 14884]
gi|328450833|gb|AEB11734.1| DNA ligase [Marinithermus hydrothermalis DSM 14884]
Length = 676
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 34/65 (52%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+++ EA V L + +H YY LD+P +D YD + L AL+ ++P+L D P
Sbjct: 1 MTREEAKKRVLELRQAIRYHNYRYYVLDDPEISDAEYDALMRELKALEARYPDLVTPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQVVG 65
>gi|83592275|ref|YP_426027.1| DNA ligase (NAD+) [Rhodospirillum rubrum ATCC 11170]
gi|123753272|sp|Q2RVV5|DNLJ_RHORT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|83575189|gb|ABC21740.1| DNA ligase (NAD+) [Rhodospirillum rubrum ATCC 11170]
Length = 698
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 35/69 (50%)
Query: 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
V L++ EA E+E L H + Y++ D P TDG YD + R + ++ FPEL
Sbjct: 3 PVADLTEAEAARELERLAAEIARHDRLYHQQDAPEITDGEYDALVRRNNEIEAAFPELVR 62
Query: 110 EDHPWNTVG 118
D P VG
Sbjct: 63 GDSPSAHVG 71
>gi|91977847|ref|YP_570506.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris BisB5]
gi|123735250|sp|Q133Y4|DNLJ_RHOPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|91684303|gb|ABE40605.1| DNA ligase, NAD-dependent [Rhodopseudomonas palustris BisB5]
Length = 714
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 37/71 (52%)
Query: 48 AKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
A + L+K +A +E+ L H K YY+ D P D YD + RL+A++ +FPEL
Sbjct: 9 APDIDKLTKPKAKVELMRLRLAIEGHDKAYYQDDAPKIPDADYDALRRRLEAIEAKFPEL 68
Query: 108 FDEDHPWNTVG 118
P TVG
Sbjct: 69 LSASSPSQTVG 79
>gi|222149123|ref|YP_002550080.1| NAD-dependent DNA ligase LigA [Agrobacterium vitis S4]
gi|254781248|sp|B9JY41|DNLJ_AGRVS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|221736108|gb|ACM37071.1| DNA ligase [Agrobacterium vitis S4]
Length = 719
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 34/73 (46%)
Query: 46 DKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFP 105
D V LS+ +A E+ L HH Y+ D P +D YD + R DA++ +FP
Sbjct: 3 DALIPVEDLSEEQAGQELIRLAAAIAHHDALYHGKDQPEISDADYDALKRRNDAIEARFP 62
Query: 106 ELFDEDHPWNTVG 118
L D P VG
Sbjct: 63 TLVRSDSPSQRVG 75
>gi|306844319|ref|ZP_07476911.1| DNA ligase, NAD-dependent [Brucella sp. BO1]
gi|306275391|gb|EFM57132.1| DNA ligase, NAD-dependent [Brucella sp. BO1]
Length = 719
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 38/68 (55%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V L++ EA E+E L + HH + Y+ D+P +D YD + R +A++ +FP L +
Sbjct: 6 VEKLTELEAAAELERLARAIAHHDELYHAKDSPEISDAAYDALKRRNEAIEARFPALVRD 65
Query: 111 DHPWNTVG 118
D P VG
Sbjct: 66 DSPSRRVG 73
>gi|27381702|ref|NP_773231.1| DNA ligase [Bradyrhizobium japonicum USDA 110]
gi|81735382|sp|Q89FV8|DNLJ_BRAJA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|27354871|dbj|BAC51856.1| DNA ligase [Bradyrhizobium japonicum USDA 110]
Length = 716
Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 38/70 (54%)
Query: 49 KKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF 108
+ V L+K +A +E+ L H K YY+ D P TD YD + +R +A++++FPE
Sbjct: 12 RDVAELTKAQAKVELMRLALELEGHDKRYYQDDAPTVTDAEYDALRQRFNAIEKRFPEFV 71
Query: 109 DEDHPWNTVG 118
+ P VG
Sbjct: 72 SAESPSQKVG 81
>gi|103486042|ref|YP_615603.1| DNA ligase, NAD-dependent [Sphingopyxis alaskensis RB2256]
gi|123078573|sp|Q1GVQ2|DNLJ_SPHAL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|98976119|gb|ABF52270.1| DNA ligase, NAD-dependent [Sphingopyxis alaskensis RB2256]
Length = 714
Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 37/70 (52%)
Query: 49 KKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF 108
K V SL++ EA E+ L K HH K Y+ D+P +D YD + R A++E FP L
Sbjct: 2 KDVGSLTEAEAANELMRLAKQIAHHNKLYHAEDSPEISDADYDALVRRNTAIEEAFPHLI 61
Query: 109 DEDHPWNTVG 118
D P VG
Sbjct: 62 RADSPNRLVG 71
>gi|146342488|ref|YP_001207536.1| DNA ligase [Bradyrhizobium sp. ORS278]
gi|166215400|sp|A4YZJ3|DNLJ_BRASO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|146195294|emb|CAL79319.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+])
[Bradyrhizobium sp. ORS278]
Length = 716
Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 40/72 (55%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
++ V L+K +A +E + L H + YY+ D P +D YD + R +A++++FPE
Sbjct: 9 QSVDVADLTKAQAKVEWKRLALELETHDRLYYQEDAPKISDAAYDELRRRFNAIEKRFPE 68
Query: 107 LFDEDHPWNTVG 118
L D P TVG
Sbjct: 69 LVSRDSPSQTVG 80
>gi|307944884|ref|ZP_07660221.1| DNA ligase, NAD-dependent [Roseibium sp. TrichSKD4]
gi|307771808|gb|EFO31032.1| DNA ligase, NAD-dependent [Roseibium sp. TrichSKD4]
Length = 721
Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 36/69 (52%)
Query: 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
V +L+ +A E+E L H K Y++ D P +D YD + R A++ +FP+L
Sbjct: 14 DVEALTSEQAETELERLANAIAKHDKLYHQDDAPAISDADYDALRRRNTAIEARFPDLVR 73
Query: 110 EDHPWNTVG 118
+D P VG
Sbjct: 74 DDSPSRNVG 82
>gi|306843233|ref|ZP_07475843.1| DNA ligase, NAD-dependent [Brucella sp. BO2]
gi|306286556|gb|EFM58135.1| DNA ligase, NAD-dependent [Brucella sp. BO2]
Length = 719
Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 37/68 (54%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V L++ EA E+E L + HH + Y+ D+P +D YD + R +A++ FP L +
Sbjct: 6 VEKLTELEAAAELERLARAIAHHDELYHAKDSPEISDAAYDALKRRNEAIEAHFPALVRD 65
Query: 111 DHPWNTVG 118
D P VG
Sbjct: 66 DSPSRRVG 73
>gi|85714986|ref|ZP_01045971.1| NAD-dependent DNA ligase [Nitrobacter sp. Nb-311A]
gi|85698183|gb|EAQ36055.1| NAD-dependent DNA ligase [Nitrobacter sp. Nb-311A]
Length = 705
Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 39/71 (54%)
Query: 48 AKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
V SL++ +A +E + LV H + YY+ D P +D YD + RL+A++ +FP+L
Sbjct: 8 PPPVDSLTRSQARVEHKRLVLEIEAHNERYYQQDAPTVSDAAYDAMQRRLEAIEARFPDL 67
Query: 108 FDEDHPWNTVG 118
P TVG
Sbjct: 68 VTASSPTQTVG 78
>gi|20807100|ref|NP_622271.1| NAD-dependent DNA ligase [Thermoanaerobacter tengcongensis MB4]
gi|81482513|sp|Q8RC42|DNLJ_THETN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|20515592|gb|AAM23875.1| NAD-dependent DNA ligase (contains BRCT domain type II)
[Thermoanaerobacter tengcongensis MB4]
Length = 666
Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 32/65 (49%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + EA +E L + +H YY LD P +D YD + L L+E++PE D P
Sbjct: 1 MDREEARKRIEELREKINYHNYRYYVLDQPEISDYEYDMLMRELIELEEKYPEFKTPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SQRVG 65
>gi|294852747|ref|ZP_06793420.1| DNA ligase [Brucella sp. NVSL 07-0026]
gi|294821336|gb|EFG38335.1| DNA ligase [Brucella sp. NVSL 07-0026]
Length = 719
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 36/68 (52%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V L++ EA E+E L + HH + Y+ D P +D YD + R +A++ FP L +
Sbjct: 6 VEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALVRD 65
Query: 111 DHPWNTVG 118
D P VG
Sbjct: 66 DSPSRRVG 73
>gi|260892973|ref|YP_003239070.1| DNA ligase, NAD-dependent [Ammonifex degensii KC4]
gi|260865114|gb|ACX52220.1| DNA ligase, NAD-dependent [Ammonifex degensii KC4]
Length = 672
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 36/65 (55%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
LSK EA +E L + +H YY LD+P+ +D YDR+ L AL+E FPE + P
Sbjct: 5 LSKEEAKRRIEELRREIAYHDYRYYVLDSPVISDAEYDRLVLELMALEEAFPEFITPNSP 64
Query: 114 WNTVG 118
VG
Sbjct: 65 TQRVG 69
>gi|256255361|ref|ZP_05460897.1| NAD-dependent DNA ligase LigA [Brucella ceti B1/94]
gi|261222562|ref|ZP_05936843.1| NAD-dependent DNA ligase LigA [Brucella ceti B1/94]
gi|260921146|gb|EEX87799.1| NAD-dependent DNA ligase LigA [Brucella ceti B1/94]
Length = 719
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 36/68 (52%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V L++ EA E+E L + HH + Y+ D P +D YD + R +A++ FP L +
Sbjct: 6 VEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALVRD 65
Query: 111 DHPWNTVG 118
D P VG
Sbjct: 66 DSPSRRVG 73
>gi|209884394|ref|YP_002288251.1| DNA ligase, NAD-dependent [Oligotropha carboxidovorans OM5]
gi|254781382|sp|B6JB45|DNLJ_OLICO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|209872590|gb|ACI92386.1| DNA ligase, NAD-dependent [Oligotropha carboxidovorans OM5]
Length = 706
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 38/70 (54%)
Query: 49 KKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF 108
V L+K +A +E + L H + YY+ D P +D YD + +RL+A++ +FPEL
Sbjct: 10 PSVDQLTKAQAKVEHKRLALEIAMHDERYYQKDAPTVSDAAYDSLRQRLNAVEARFPELV 69
Query: 109 DEDHPWNTVG 118
D P VG
Sbjct: 70 TTDSPSQKVG 79
>gi|254719452|ref|ZP_05181263.1| NAD-dependent DNA ligase LigA [Brucella sp. 83/13]
gi|265984457|ref|ZP_06097192.1| NAD-dependent DNA ligase LigA [Brucella sp. 83/13]
gi|306839229|ref|ZP_07472046.1| DNA ligase, NAD-dependent [Brucella sp. NF 2653]
gi|264663049|gb|EEZ33310.1| NAD-dependent DNA ligase LigA [Brucella sp. 83/13]
gi|306405776|gb|EFM62038.1| DNA ligase, NAD-dependent [Brucella sp. NF 2653]
Length = 719
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 37/68 (54%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V L++ EA E+E L + HH + Y+ D+P +D YD + R +A++ FP L +
Sbjct: 6 VEKLTELEAAAELERLARAIAHHDELYHAKDSPEISDAAYDALKRRNEAIEAHFPALVRD 65
Query: 111 DHPWNTVG 118
D P VG
Sbjct: 66 DSPSRRVG 73
>gi|256061478|ref|ZP_05451622.1| NAD-dependent DNA ligase LigA [Brucella neotomae 5K33]
gi|261325484|ref|ZP_05964681.1| NAD-dependent DNA ligase LigA [Brucella neotomae 5K33]
gi|261301464|gb|EEY04961.1| NAD-dependent DNA ligase LigA [Brucella neotomae 5K33]
Length = 719
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 36/68 (52%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V L++ EA E+E L + HH + Y+ D P +D YD + R +A++ FP L +
Sbjct: 6 VEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALVRD 65
Query: 111 DHPWNTVG 118
D P VG
Sbjct: 66 DSPSRRVG 73
>gi|225852902|ref|YP_002733135.1| NAD-dependent DNA ligase LigA [Brucella melitensis ATCC 23457]
gi|256263616|ref|ZP_05466148.1| DNA ligase [Brucella melitensis bv. 2 str. 63/9]
gi|254781270|sp|C0RE59|DNLJ_BRUMB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|225641267|gb|ACO01181.1| DNA ligase, NAD-dependent [Brucella melitensis ATCC 23457]
gi|263093668|gb|EEZ17673.1| DNA ligase [Brucella melitensis bv. 2 str. 63/9]
gi|326409444|gb|ADZ66509.1| NAD-dependent DNA ligase LigA [Brucella melitensis M28]
gi|326539150|gb|ADZ87365.1| DNA ligase, NAD-dependent [Brucella melitensis M5-90]
Length = 719
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 36/68 (52%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V L++ EA E+E L + HH + Y+ D P +D YD + R +A++ FP L +
Sbjct: 6 VEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALVRD 65
Query: 111 DHPWNTVG 118
D P VG
Sbjct: 66 DSPSRRVG 73
>gi|17986872|ref|NP_539506.1| NAD-dependent DNA ligase LigA [Brucella melitensis bv. 1 str. 16M]
gi|256045051|ref|ZP_05447952.1| NAD-dependent DNA ligase LigA [Brucella melitensis bv. 1 str.
Rev.1]
gi|260565350|ref|ZP_05835834.1| DNA ligase [Brucella melitensis bv. 1 str. 16M]
gi|265991477|ref|ZP_06104034.1| NAD-dependent DNA ligase LigA [Brucella melitensis bv. 1 str.
Rev.1]
gi|81852173|sp|Q8YI56|DNLJ_BRUME RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|17982511|gb|AAL51770.1| nad-dependent DNA ligase [Brucella melitensis bv. 1 str. 16M]
gi|260151418|gb|EEW86512.1| DNA ligase [Brucella melitensis bv. 1 str. 16M]
gi|263002261|gb|EEZ14836.1| NAD-dependent DNA ligase LigA [Brucella melitensis bv. 1 str.
Rev.1]
Length = 719
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 36/68 (52%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V L++ EA E+E L + HH + Y+ D P +D YD + R +A++ FP L +
Sbjct: 6 VEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALVRD 65
Query: 111 DHPWNTVG 118
D P VG
Sbjct: 66 DSPSRRVG 73
>gi|148658591|ref|YP_001278796.1| DNA ligase [Roseiflexus sp. RS-1]
gi|166216236|sp|A5V1U3|DNLJ_ROSS1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|148570701|gb|ABQ92846.1| DNA ligase, NAD-dependent [Roseiflexus sp. RS-1]
Length = 726
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 30/65 (46%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ VE L + +H YY LD P+ +D YD + L AL+ PEL D P
Sbjct: 1 MNNDHLTRRVEALREQIRYHNYRYYVLDEPVISDAEYDALMRELRALEAAHPELVTPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|254702142|ref|ZP_05163970.1| NAD-dependent DNA ligase LigA [Brucella suis bv. 5 str. 513]
gi|261752711|ref|ZP_05996420.1| NAD-dependent DNA ligase LigA [Brucella suis bv. 5 str. 513]
gi|261742464|gb|EEY30390.1| NAD-dependent DNA ligase LigA [Brucella suis bv. 5 str. 513]
Length = 719
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 36/68 (52%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V L++ EA E+E L + HH + Y+ D P +D YD + R +A++ FP L +
Sbjct: 6 VEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALVRD 65
Query: 111 DHPWNTVG 118
D P VG
Sbjct: 66 DSPSRRVG 73
>gi|148560656|ref|YP_001259312.1| NAD-dependent DNA ligase LigA [Brucella ovis ATCC 25840]
gi|166215401|sp|A5VRG5|DNLJ_BRUO2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|148371913|gb|ABQ61892.1| DNA ligase, NAD-dependent [Brucella ovis ATCC 25840]
Length = 719
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 36/68 (52%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V L++ EA E+E L + HH + Y+ D P +D YD + R +A++ FP L +
Sbjct: 6 VEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALVRD 65
Query: 111 DHPWNTVG 118
D P VG
Sbjct: 66 DSPSRRVG 73
>gi|296285034|ref|ZP_06863032.1| DNA ligase [Citromicrobium bathyomarinum JL354]
Length = 733
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 45 LDKAKKVTS-LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQ 103
+D K + LS+ EA E+ L + H + Y+ D P TD YD + R +AL+
Sbjct: 1 MDDQKDLAEPLSEAEAANELMRLARTIRKHNRLYHAEDAPEITDQEYDALVRRNEALEAA 60
Query: 104 FPELFDEDHPWNTVGY 119
FP+L D P VG+
Sbjct: 61 FPDLVRPDSPSKGVGH 76
>gi|114570616|ref|YP_757296.1| DNA ligase [Maricaulis maris MCS10]
gi|122315591|sp|Q0AMX9|DNLJ_MARMM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|114341078|gb|ABI66358.1| DNA ligase, NAD-dependent [Maricaulis maris MCS10]
Length = 701
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 37/74 (50%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
+ K V L++ EA E L + H K YY+ D P +D YD + +L+A++ +F
Sbjct: 1 MSALKDVDQLTEAEARAEHARLAREIAGHDKAYYQSDAPKISDAAYDALRRKLEAIEVRF 60
Query: 105 PELFDEDHPWNTVG 118
P+ D P VG
Sbjct: 61 PQFIDLLSPTQRVG 74
>gi|83858905|ref|ZP_00952427.1| NAD-dependent DNA ligase [Oceanicaulis alexandrii HTCC2633]
gi|83853728|gb|EAP91580.1| NAD-dependent DNA ligase [Oceanicaulis alexandrii HTCC2633]
Length = 695
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 38/70 (54%)
Query: 49 KKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF 108
K V +L+ EA E+E L + H K YY D P +D YD + R A++ +FPEL
Sbjct: 6 KDVNALTSDEAASELERLAREISRHDKAYYEKDAPKISDAAYDALRARNSAIEARFPELK 65
Query: 109 DEDHPWNTVG 118
+D P + VG
Sbjct: 66 RKDSPSDRVG 75
>gi|296132371|ref|YP_003639618.1| DNA ligase, NAD-dependent [Thermincola sp. JR]
gi|296030949|gb|ADG81717.1| DNA ligase, NAD-dependent [Thermincola potens JR]
Length = 665
Score = 114 bits (285), Expect = 4e-24, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 32/65 (49%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K A + L K H +YY LD P TD YDR+ L L++Q+P+L D P
Sbjct: 1 MDKAAAAKRINELRKQIEEHNYYYYVLDRPRITDAEYDRLMRELTELEQQYPDLVTPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|134300185|ref|YP_001113681.1| NAD-dependent DNA ligase [Desulfotomaculum reducens MI-1]
gi|190359251|sp|A4J703|DNLJ_DESRM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|134052885|gb|ABO50856.1| DNA ligase, NAD-dependent [Desulfotomaculum reducens MI-1]
Length = 670
Score = 114 bits (285), Expect = 4e-24, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 32/62 (51%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ VE L + HH YY LD P TD YD++ + L L+E+ PEL D P
Sbjct: 6 QQSKARVEALRREINHHNYQYYVLDQPTITDAQYDQLMQELLRLEERHPELVTPDSPTQR 65
Query: 117 VG 118
VG
Sbjct: 66 VG 67
>gi|23502291|ref|NP_698418.1| NAD-dependent DNA ligase LigA [Brucella suis 1330]
gi|62290313|ref|YP_222106.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 1 str. 9-941]
gi|82700237|ref|YP_414811.1| NAD-dependent DNA ligase LigA [Brucella melitensis biovar Abortus
2308]
gi|161619368|ref|YP_001593255.1| NAD-dependent DNA ligase LigA [Brucella canis ATCC 23365]
gi|163843675|ref|YP_001628079.1| NAD-dependent DNA ligase LigA [Brucella suis ATCC 23445]
gi|189024547|ref|YP_001935315.1| NAD-dependent DNA ligase LigA [Brucella abortus S19]
gi|225627871|ref|ZP_03785908.1| DNA ligase, NAD-dependent [Brucella ceti str. Cudo]
gi|254689615|ref|ZP_05152869.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 6 str. 870]
gi|254694105|ref|ZP_05155933.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 3 str. Tulya]
gi|254697757|ref|ZP_05159585.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 2 str. 86/8/59]
gi|254704678|ref|ZP_05166506.1| NAD-dependent DNA ligase LigA [Brucella suis bv. 3 str. 686]
gi|254708093|ref|ZP_05169921.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis M163/99/10]
gi|254710462|ref|ZP_05172273.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis B2/94]
gi|254730646|ref|ZP_05189224.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 4 str. 292]
gi|256031956|ref|ZP_05445570.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis M292/94/1]
gi|256113974|ref|ZP_05454757.1| NAD-dependent DNA ligase LigA [Brucella melitensis bv. 3 str.
Ether]
gi|256160155|ref|ZP_05457849.1| NAD-dependent DNA ligase LigA [Brucella ceti M490/95/1]
gi|256257864|ref|ZP_05463400.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 9 str. C68]
gi|256369836|ref|YP_003107347.1| DNA ligase [Brucella microti CCM 4915]
gi|260169093|ref|ZP_05755904.1| NAD-dependent DNA ligase LigA [Brucella sp. F5/99]
gi|260546856|ref|ZP_05822595.1| DNA ligase [Brucella abortus NCTC 8038]
gi|260566074|ref|ZP_05836544.1| DNA ligase [Brucella suis bv. 4 str. 40]
gi|260755142|ref|ZP_05867490.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 6 str. 870]
gi|260758361|ref|ZP_05870709.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 4 str. 292]
gi|260762187|ref|ZP_05874530.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 2 str. 86/8/59]
gi|260884154|ref|ZP_05895768.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 9 str. C68]
gi|261214403|ref|ZP_05928684.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 3 str. Tulya]
gi|261315595|ref|ZP_05954792.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis M163/99/10]
gi|261318033|ref|ZP_05957230.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis B2/94]
gi|261755371|ref|ZP_05999080.1| NAD-dependent DNA ligase LigA [Brucella suis bv. 3 str. 686]
gi|261758598|ref|ZP_06002307.1| DNA ligase [Brucella sp. F5/99]
gi|265989064|ref|ZP_06101621.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis M292/94/1]
gi|265995315|ref|ZP_06107872.1| NAD-dependent DNA ligase LigA [Brucella melitensis bv. 3 str.
Ether]
gi|265998527|ref|ZP_06111084.1| NAD-dependent DNA ligase LigA [Brucella ceti M490/95/1]
gi|297248700|ref|ZP_06932418.1| DNA ligase, NAD-dependent [Brucella abortus bv. 5 str. B3196]
gi|75496544|sp|Q57C89|DNLJ_BRUAB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|81752355|sp|Q8FZQ3|DNLJ_BRUSU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|123768412|sp|Q2YLZ6|DNLJ_BRUA2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|190359236|sp|A9M679|DNLJ_BRUC2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|190359237|sp|B0CHK8|DNLJ_BRUSI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254781269|sp|B2S6P4|DNLJ_BRUA1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|23348266|gb|AAN30333.1| DNA ligase, NAD-dependent [Brucella suis 1330]
gi|62196445|gb|AAX74745.1| LigA, DNA ligase, NAD-dependent [Brucella abortus bv. 1 str. 9-941]
gi|82616338|emb|CAJ11395.1| BRCT domain:NAD-dependent DNA ligase:ATP/GTP-binding site motif A
(P-loop):Zn-finger in NAD-dependent DNA ligase, C4
type:NAD [Brucella melitensis biovar Abortus 2308]
gi|161336179|gb|ABX62484.1| DNA ligase, NAD-dependent [Brucella canis ATCC 23365]
gi|163674398|gb|ABY38509.1| DNA ligase, NAD-dependent [Brucella suis ATCC 23445]
gi|189020119|gb|ACD72841.1| DNA ligase [Brucella abortus S19]
gi|225617876|gb|EEH14921.1| DNA ligase, NAD-dependent [Brucella ceti str. Cudo]
gi|255999999|gb|ACU48398.1| DNA ligase [Brucella microti CCM 4915]
gi|260095906|gb|EEW79783.1| DNA ligase [Brucella abortus NCTC 8038]
gi|260155592|gb|EEW90672.1| DNA ligase [Brucella suis bv. 4 str. 40]
gi|260668679|gb|EEX55619.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 4 str. 292]
gi|260672619|gb|EEX59440.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 2 str. 86/8/59]
gi|260675250|gb|EEX62071.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 6 str. 870]
gi|260873682|gb|EEX80751.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 9 str. C68]
gi|260916010|gb|EEX82871.1| NAD-dependent DNA ligase LigA [Brucella abortus bv. 3 str. Tulya]
gi|261297256|gb|EEY00753.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis B2/94]
gi|261304621|gb|EEY08118.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis M163/99/10]
gi|261738582|gb|EEY26578.1| DNA ligase [Brucella sp. F5/99]
gi|261745124|gb|EEY33050.1| NAD-dependent DNA ligase LigA [Brucella suis bv. 3 str. 686]
gi|262553151|gb|EEZ08985.1| NAD-dependent DNA ligase LigA [Brucella ceti M490/95/1]
gi|262766428|gb|EEZ12217.1| NAD-dependent DNA ligase LigA [Brucella melitensis bv. 3 str.
Ether]
gi|264661261|gb|EEZ31522.1| NAD-dependent DNA ligase LigA [Brucella pinnipedialis M292/94/1]
gi|297175869|gb|EFH35216.1| DNA ligase, NAD-dependent [Brucella abortus bv. 5 str. B3196]
Length = 719
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 36/68 (52%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V L++ EA E+E L + HH + Y+ D P +D YD + R +A++ FP L +
Sbjct: 6 VEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALVRD 65
Query: 111 DHPWNTVG 118
D P VG
Sbjct: 66 DSPSRRVG 73
>gi|254714455|ref|ZP_05176266.1| NAD-dependent DNA ligase LigA [Brucella ceti M644/93/1]
gi|254717353|ref|ZP_05179164.1| NAD-dependent DNA ligase LigA [Brucella ceti M13/05/1]
gi|261219183|ref|ZP_05933464.1| NAD-dependent DNA ligase LigA [Brucella ceti M13/05/1]
gi|261322244|ref|ZP_05961441.1| NAD-dependent DNA ligase LigA [Brucella ceti M644/93/1]
gi|260924272|gb|EEX90840.1| NAD-dependent DNA ligase LigA [Brucella ceti M13/05/1]
gi|261294934|gb|EEX98430.1| NAD-dependent DNA ligase LigA [Brucella ceti M644/93/1]
Length = 719
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 36/68 (52%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V L++ EA E+E L + HH + Y+ D P +D YD + R +A++ FP L +
Sbjct: 6 VEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALVRD 65
Query: 111 DHPWNTVG 118
D P VG
Sbjct: 66 DSPSRRVG 73
>gi|237815820|ref|ZP_04594817.1| DNA ligase, NAD-dependent [Brucella abortus str. 2308 A]
gi|237789118|gb|EEP63329.1| DNA ligase, NAD-dependent [Brucella abortus str. 2308 A]
Length = 725
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 36/68 (52%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V L++ EA E+E L + HH + Y+ D P +D YD + R +A++ FP L +
Sbjct: 12 VEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALVRD 71
Query: 111 DHPWNTVG 118
D P VG
Sbjct: 72 DSPSRRVG 79
>gi|209963935|ref|YP_002296850.1| DNA ligase, NAD-dependent [Rhodospirillum centenum SW]
gi|254781401|sp|B6IRF1|DNLJ_RHOCS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|209957401|gb|ACI98037.1| DNA ligase, NAD-dependent [Rhodospirillum centenum SW]
Length = 719
Score = 114 bits (285), Expect = 6e-24, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 35/69 (50%)
Query: 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
V +L+ +A E LV+ HH+ YY D P D YD + RL L+ +FPEL
Sbjct: 11 PVETLTLDQAAAEHAALVREIAHHRALYYGKDAPEIADSAYDALEHRLAGLEARFPELVT 70
Query: 110 EDHPWNTVG 118
D P TVG
Sbjct: 71 PDSPTQTVG 79
>gi|110634347|ref|YP_674555.1| DNA ligase, NAD-dependent [Mesorhizobium sp. BNC1]
gi|123162160|sp|Q11GT5|DNLJ_MESSB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|110285331|gb|ABG63390.1| DNA ligase, NAD-dependent [Chelativorans sp. BNC1]
Length = 703
Score = 114 bits (285), Expect = 6e-24, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 33/69 (47%)
Query: 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
V L++ +A E+ L + H + YY D P +D YD + R A+++ FP L
Sbjct: 7 PVDELTEEQAKDELARLAQEIGRHDRLYYSEDAPEVSDAEYDALRRRNLAIEQAFPNLIR 66
Query: 110 EDHPWNTVG 118
D P +G
Sbjct: 67 ADSPSKRIG 75
>gi|326387612|ref|ZP_08209218.1| DNA ligase, NAD-dependent [Novosphingobium nitrogenifigens DSM
19370]
gi|326207658|gb|EGD58469.1| DNA ligase, NAD-dependent [Novosphingobium nitrogenifigens DSM
19370]
Length = 687
Score = 114 bits (285), Expect = 6e-24, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 34/69 (49%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
+ ++++ +A E+ L + +H + Y+ LD P D YD + R ++ FP L
Sbjct: 3 IDAMTEADAANELMRLARQIAYHDRLYHTLDTPEIADAEYDALVRRNAEIEAAFPHLIRA 62
Query: 111 DHPWNTVGY 119
D P VG+
Sbjct: 63 DSPSRKVGH 71
>gi|108803178|ref|YP_643115.1| DNA ligase, NAD-dependent [Rubrobacter xylanophilus DSM 9941]
gi|122976160|sp|Q1AZ75|DNLJ_RUBXD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|108764421|gb|ABG03303.1| DNA ligase, NAD-dependent [Rubrobacter xylanophilus DSM 9941]
Length = 685
Score = 114 bits (285), Expect = 6e-24, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 34/75 (45%)
Query: 44 WLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQ 103
L + + EA VE L + +H + YY D P +D YD + L+ L+ +
Sbjct: 5 TLPRIIPPVAEKLAEARQRVEELREQIRYHNRKYYVEDAPEISDAEYDALYRELEELESR 64
Query: 104 FPELFDEDHPWNTVG 118
FPEL D P VG
Sbjct: 65 FPELVTPDSPTQRVG 79
>gi|156740882|ref|YP_001431011.1| DNA ligase [Roseiflexus castenholzii DSM 13941]
gi|190359279|sp|A7NHP6|DNLJ_ROSCS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|156232210|gb|ABU56993.1| DNA ligase, NAD-dependent [Roseiflexus castenholzii DSM 13941]
Length = 718
Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 30/65 (46%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ + + E L + +H YY LD P+ +D YD + L L+ PEL D P
Sbjct: 1 MTSNDPVRRAETLREQIRYHNYRYYVLDEPVISDAEYDALMRELRELEAAHPELVTPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|146312580|ref|YP_001177654.1| NAD-dependent DNA ligase LigA [Enterobacter sp. 638]
gi|190359255|sp|A4WD23|DNLJ_ENT38 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|145319456|gb|ABP61603.1| DNA ligase, NAD-dependent [Enterobacter sp. 638]
Length = 671
Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ L HH+ Y+ +D P D YDR+ L L+ Q PEL D P
Sbjct: 2 DSIEQQLTQLRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEAQHPELVTPDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|297566494|ref|YP_003685466.1| DNA ligase, NAD-dependent [Meiothermus silvanus DSM 9946]
gi|296850943|gb|ADH63958.1| DNA ligase, NAD-dependent [Meiothermus silvanus DSM 9946]
Length = 670
Score = 113 bits (283), Expect = 9e-24, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 33/61 (54%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
EA + L + +H YY LD+P+ +D YDR+ L L+ ++PEL D P TV
Sbjct: 10 EAQRRIHQLREEIRYHNYRYYVLDDPVISDAEYDRLLRELKELEARYPELVTPDSPTQTV 69
Query: 118 G 118
G
Sbjct: 70 G 70
>gi|73541575|ref|YP_296095.1| NAD-dependent DNA ligase [Ralstonia eutropha JMP134]
gi|123732913|sp|Q470D2|DNLJ_RALEJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|72118988|gb|AAZ61251.1| NAD-dependent DNA ligase [Ralstonia eutropha JMP134]
Length = 711
Score = 113 bits (283), Expect = 9e-24, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 30/73 (41%)
Query: 46 DKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFP 105
D + L A V++L H YY LD P D YD + L AL+ + P
Sbjct: 11 DASAPAGGLPPATAAERVQWLRDELDRHNYQYYVLDAPTIPDAEYDALFTELQALEAEHP 70
Query: 106 ELFDEDHPWNTVG 118
EL D P VG
Sbjct: 71 ELLTPDSPTQRVG 83
>gi|313903518|ref|ZP_07836909.1| DNA ligase, NAD-dependent [Thermaerobacter subterraneus DSM 13965]
gi|313466339|gb|EFR61862.1| DNA ligase, NAD-dependent [Thermaerobacter subterraneus DSM 13965]
Length = 817
Score = 113 bits (283), Expect = 9e-24, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
A+ V + A VE L + HH YY LD P D YD + +L L+++FPE
Sbjct: 46 PAEDVPA-DLEAARARVEALREQIRHHDYLYYVLDRPEIDDAAYDALMRQLRELEQRFPE 104
Query: 107 LFDEDHPWNTVG 118
L D P VG
Sbjct: 105 LVTPDSPTQRVG 116
>gi|163760776|ref|ZP_02167856.1| DNA ligase, NAD-dependent [Hoeflea phototrophica DFL-43]
gi|162282098|gb|EDQ32389.1| DNA ligase, NAD-dependent [Hoeflea phototrophica DFL-43]
Length = 739
Score = 113 bits (283), Expect = 9e-24, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 37/72 (51%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
K + +LS+ EA E++ L H + Y+R D P+ +D YD R A++E+FP
Sbjct: 40 DTKPIEALSEAEAKAELDRLAAEIARHDEAYHRKDAPIVSDAEYDAFKRRNLAIEERFPH 99
Query: 107 LFDEDHPWNTVG 118
L D P VG
Sbjct: 100 LRLADSPSLKVG 111
>gi|261340751|ref|ZP_05968609.1| DNA ligase, NAD-dependent [Enterobacter cancerogenus ATCC 35316]
gi|288317173|gb|EFC56111.1| DNA ligase, NAD-dependent [Enterobacter cancerogenus ATCC 35316]
Length = 671
Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ L HH+ Y+ +D P D YDR+ L L+ Q PEL D P
Sbjct: 2 DSIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEAQHPELITPDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|52425821|ref|YP_088958.1| NAD-dependent DNA ligase LigA [Mannheimia succiniciproducens
MBEL55E]
gi|81386743|sp|Q65RN7|DNLJ_MANSM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|52307873|gb|AAU38373.1| Lig protein [Mannheimia succiniciproducens MBEL55E]
Length = 675
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 35/65 (53%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ + +++ L +H+ Y+ LD+P D YDR+ +L AL++Q PEL D P
Sbjct: 1 MTIMDINQQIKQLRDTLRYHEYQYHVLDDPKIPDAEYDRLFHQLKALEQQHPELITADSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|332798609|ref|YP_004460108.1| DNA ligase [Tepidanaerobacter sp. Re1]
gi|332696344|gb|AEE90801.1| DNA ligase [Tepidanaerobacter sp. Re1]
Length = 675
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 34/65 (52%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ +A ++ L + +H YY LDNP TD YD++ L +L+ QFP+L D P
Sbjct: 1 MDIVQAENRIKELRESIDYHNYRYYVLDNPEITDAEYDKLMRELISLESQFPQLITPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SQRVG 65
>gi|283786048|ref|YP_003365913.1| DNA ligase [Citrobacter rodentium ICC168]
gi|282949502|emb|CBG89116.1| DNA ligase [Citrobacter rodentium ICC168]
Length = 671
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ L HH+ Y+ +D P D YDR+ L L+ Q PEL D P
Sbjct: 2 ESIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEAQHPELITPDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|323967844|gb|EGB63256.1| DNA ligase [Escherichia coli M863]
gi|327252066|gb|EGE63738.1| DNA ligase, NAD-dependent [Escherichia coli STEC_7v]
Length = 671
Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ L HH+ Y+ +D P D YDR+ L L+ + PEL D P
Sbjct: 2 ESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAKHPELITPDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|319899147|ref|YP_004159240.1| DNA ligase [Bartonella clarridgeiae 73]
gi|319403111|emb|CBI76669.1| DNA ligase [Bartonella clarridgeiae 73]
Length = 718
Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 35/68 (51%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
+ +L+ EA E+E+L K H YYR D P +D YD + R A++ FPEL
Sbjct: 6 IKNLTALEAASELEWLAKEIARHDVLYYRDDQPEISDAEYDALRRRNGAIENLFPELIRA 65
Query: 111 DHPWNTVG 118
D P +G
Sbjct: 66 DSPTFKIG 73
>gi|83590843|ref|YP_430852.1| DNA ligase, NAD-dependent [Moorella thermoacetica ATCC 39073]
gi|123739230|sp|Q2RGY0|DNLJ_MOOTA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|83573757|gb|ABC20309.1| DNA ligase, NAD-dependent [Moorella thermoacetica ATCC 39073]
Length = 666
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 32/65 (49%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ A VE L ++ H YY LD P +D YD + + L AL+E +PEL D P
Sbjct: 1 MDLAAARQRVEELRRLIEEHNYRYYVLDQPSISDREYDALMQELIALEEAYPELRTPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SQRVG 65
>gi|157144662|ref|YP_001451981.1| NAD-dependent DNA ligase LigA [Citrobacter koseri ATCC BAA-895]
gi|166215574|sp|A8ADI2|DNLJ_CITK8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|157081867|gb|ABV11545.1| hypothetical protein CKO_00382 [Citrobacter koseri ATCC BAA-895]
Length = 671
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ L HH+ Y+ +D P D YDR+ L L+ Q P+L D P
Sbjct: 2 ESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQHPDLITPDSPSQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|152979719|ref|YP_001345348.1| NAD-dependent DNA ligase LigA [Actinobacillus succinogenes 130Z]
gi|190359224|sp|A6VR16|DNLJ_ACTSZ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|150841442|gb|ABR75413.1| DNA ligase, NAD-dependent [Actinobacillus succinogenes 130Z]
Length = 672
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 32/61 (52%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+ ++ L HH+ Y+ LDNP D YDR+ RL AL++Q PEL D P V
Sbjct: 3 DIQNQINQLRNTLRHHEYQYHVLDNPEIPDSEYDRLFHRLKALEQQHPELISADSPTQRV 62
Query: 118 G 118
G
Sbjct: 63 G 63
>gi|85374270|ref|YP_458332.1| DNA ligase [Erythrobacter litoralis HTCC2594]
gi|123409617|sp|Q2N9V6|DNLJ_ERYLH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|84787353|gb|ABC63535.1| DNA ligase [Erythrobacter litoralis HTCC2594]
Length = 736
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 35/71 (49%)
Query: 49 KKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF 108
++ +LS+ EA E+ L + H + Y+ D P TD YD + R L+ FP L
Sbjct: 3 TELENLSEAEAANELMRLARQIAKHDRLYHAEDAPEITDQEYDALVRRNAELEAAFPHLV 62
Query: 109 DEDHPWNTVGY 119
ED P VG+
Sbjct: 63 REDSPSRKVGH 73
>gi|332089820|gb|EGI94921.1| DNA ligase, NAD-dependent [Shigella dysenteriae 155-74]
Length = 671
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ L HH+ Y+ +D P D YDR+ L L+ + PEL D P
Sbjct: 2 ESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|332088205|gb|EGI93327.1| DNA ligase, NAD-dependent [Shigella boydii 5216-82]
Length = 671
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ L HH+ Y+ +D P D YDR+ L L+ + PEL D P
Sbjct: 2 ESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|319407493|emb|CBI81141.1| DNA ligase [Bartonella sp. 1-1C]
Length = 725
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
+ +L+ EA E+E+L K H Y+R D P +D YD + R + ++ FPEL
Sbjct: 6 IKNLTALEAASELEWLAKEIARHDVLYHRDDQPEISDAEYDALCRRNEEIEALFPELIRA 65
Query: 111 DHPWNTVG 118
D P + +G
Sbjct: 66 DSPSSKIG 73
>gi|261868202|ref|YP_003256124.1| NAD-dependent DNA ligase LigA [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|261413534|gb|ACX82905.1| DNA ligase, NAD-dependent [Aggregatibacter actinomycetemcomitans
D11S-1]
Length = 670
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 33/60 (55%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L K HH+ Y+ LD+P D YDR+ +L AL++Q PEL D P VG
Sbjct: 5 IQQQIDDLRKTLRHHEYQYHVLDDPQIPDSEYDRLFHQLKALEQQHPELVTADSPTQRVG 64
>gi|281179485|dbj|BAI55815.1| DNA ligase [Escherichia coli SE15]
Length = 671
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ L HH+ Y+ +D P D YDR+ L L+ + PEL D P
Sbjct: 2 ESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|331673883|ref|ZP_08374646.1| DNA ligase, NAD-dependent [Escherichia coli TA280]
gi|331069156|gb|EGI40548.1| DNA ligase, NAD-dependent [Escherichia coli TA280]
Length = 671
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ L HH+ Y+ +D P D YDR+ L L+ + PEL D P
Sbjct: 2 ESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|331653837|ref|ZP_08354838.1| DNA ligase, NAD-dependent [Escherichia coli M718]
gi|331048686|gb|EGI20762.1| DNA ligase, NAD-dependent [Escherichia coli M718]
Length = 671
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ L HH+ Y+ +D P D YDR+ L L+ + PEL D P
Sbjct: 2 ESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|218548148|ref|YP_002381939.1| NAD-dependent DNA ligase LigA [Escherichia fergusonii ATCC 35469]
gi|331684067|ref|ZP_08384663.1| DNA ligase, NAD-dependent [Escherichia coli H299]
gi|254781331|sp|B7LL73|DNLJ_ESCF3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|218355689|emb|CAQ88301.1| DNA ligase, NAD(+)-dependent [Escherichia fergusonii ATCC 35469]
gi|315298233|gb|EFU57493.1| DNA ligase, NAD-dependent [Escherichia coli MS 16-3]
gi|331079019|gb|EGI50221.1| DNA ligase, NAD-dependent [Escherichia coli H299]
Length = 671
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ L HH+ Y+ +D P D YDR+ L L+ + PEL D P
Sbjct: 2 ESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|301648064|ref|ZP_07247828.1| DNA ligase, NAD-dependent [Escherichia coli MS 146-1]
gi|307139053|ref|ZP_07498409.1| NAD-dependent DNA ligase LigA [Escherichia coli H736]
gi|331643032|ref|ZP_08344167.1| DNA ligase, NAD-dependent [Escherichia coli H736]
gi|301073835|gb|EFK88641.1| DNA ligase, NAD-dependent [Escherichia coli MS 146-1]
gi|331039830|gb|EGI12050.1| DNA ligase, NAD-dependent [Escherichia coli H736]
Length = 671
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ L HH+ Y+ +D P D YDR+ L L+ + PEL D P
Sbjct: 2 ESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|300940348|ref|ZP_07154941.1| DNA ligase, NAD-dependent [Escherichia coli MS 21-1]
gi|300454839|gb|EFK18332.1| DNA ligase, NAD-dependent [Escherichia coli MS 21-1]
Length = 671
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ L HH+ Y+ +D P D YDR+ L L+ + PEL D P
Sbjct: 2 ESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|296104078|ref|YP_003614224.1| NAD-dependent DNA ligase LigA [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|295058537|gb|ADF63275.1| NAD-dependent DNA ligase LigA [Enterobacter cloacae subsp. cloacae
ATCC 13047]
Length = 671
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ L HH+ Y+ +D P D YDR+ L L+ Q PEL D P
Sbjct: 2 DSIEQQITELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRDLEAQHPELITPDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|293391716|ref|ZP_06636050.1| DNA ligase, NAD-dependent [Aggregatibacter actinomycetemcomitans
D7S-1]
gi|290952250|gb|EFE02369.1| DNA ligase, NAD-dependent [Aggregatibacter actinomycetemcomitans
D7S-1]
Length = 671
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 33/60 (55%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L K HH+ Y+ LD+P D YDR+ +L AL++Q PEL D P VG
Sbjct: 5 IQQQIDDLRKTLRHHEYQYHVLDDPQIPDSEYDRLFHQLKALEQQHPELVTADSPTQRVG 64
>gi|293410811|ref|ZP_06654387.1| DNA ligase [Escherichia coli B354]
gi|291471279|gb|EFF13763.1| DNA ligase [Escherichia coli B354]
Length = 671
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ L HH+ Y+ +D P D YDR+ L L+ + PEL D P
Sbjct: 2 ESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|218690549|ref|YP_002398761.1| NAD-dependent DNA ligase LigA [Escherichia coli ED1a]
gi|254781322|sp|B7MY64|DNLJ_ECO81 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|218428113|emb|CAR09030.2| DNA ligase, NAD(+)-dependent [Escherichia coli ED1a]
Length = 671
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ L HH+ Y+ +D P D YDR+ L L+ + PEL D P
Sbjct: 2 ESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|16130337|ref|NP_416906.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr.
MG1655]
gi|89109225|ref|AP_003005.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr.
W3110]
gi|170019306|ref|YP_001724260.1| NAD-dependent DNA ligase LigA [Escherichia coli ATCC 8739]
gi|170082020|ref|YP_001731340.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr.
DH10B]
gi|188495579|ref|ZP_03002849.1| DNA ligase, NAD-dependent [Escherichia coli 53638]
gi|238901574|ref|YP_002927370.1| DNA ligase, NAD(+)-dependent [Escherichia coli BW2952]
gi|256021895|ref|ZP_05435760.1| NAD-dependent DNA ligase LigA [Escherichia sp. 4_1_40B]
gi|300951893|ref|ZP_07165701.1| DNA ligase, NAD-dependent [Escherichia coli MS 116-1]
gi|300957240|ref|ZP_07169472.1| DNA ligase, NAD-dependent [Escherichia coli MS 175-1]
gi|301023745|ref|ZP_07187485.1| DNA ligase, NAD-dependent [Escherichia coli MS 196-1]
gi|312973347|ref|ZP_07787519.1| DNA ligase, NAD-dependent [Escherichia coli 1827-70]
gi|2506362|sp|P15042|DNLJ_ECOLI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254781324|sp|B1XA82|DNLJ_ECODH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254781325|sp|B1IX60|DNLJ_ECOLC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|149242732|pdb|2OWO|A Chain A, Last Stop On The Road To Repair: Structure Of E.Coli Dna
Ligase Bound To Nicked Dna-Adenylate
gi|146613|gb|AAA24070.1| DNA ligase (EC 6.5.1.2) [Escherichia coli]
gi|1788750|gb|AAC75464.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr.
MG1655]
gi|85675396|dbj|BAA16282.2| DNA ligase, NAD(+)-dependent [Escherichia coli str. K12 substr.
W3110]
gi|169754234|gb|ACA76933.1| DNA ligase, NAD-dependent [Escherichia coli ATCC 8739]
gi|169889855|gb|ACB03562.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr.
DH10B]
gi|188490778|gb|EDU65881.1| DNA ligase, NAD-dependent [Escherichia coli 53638]
gi|238860822|gb|ACR62820.1| DNA ligase, NAD(+)-dependent [Escherichia coli BW2952]
gi|260448502|gb|ACX38924.1| DNA ligase, NAD-dependent [Escherichia coli DH1]
gi|299880716|gb|EFI88927.1| DNA ligase, NAD-dependent [Escherichia coli MS 196-1]
gi|300315993|gb|EFJ65777.1| DNA ligase, NAD-dependent [Escherichia coli MS 175-1]
gi|300448878|gb|EFK12498.1| DNA ligase, NAD-dependent [Escherichia coli MS 116-1]
gi|309702699|emb|CBJ02028.1| DNA ligase [Escherichia coli ETEC H10407]
gi|310331942|gb|EFP99177.1| DNA ligase, NAD-dependent [Escherichia coli 1827-70]
gi|315137042|dbj|BAJ44201.1| NAD-dependent DNA ligase LigA [Escherichia coli DH1]
gi|315615662|gb|EFU96294.1| DNA ligase, NAD-dependent [Escherichia coli 3431]
gi|323936436|gb|EGB32725.1| DNA ligase [Escherichia coli E1520]
gi|323941344|gb|EGB37529.1| DNA ligase [Escherichia coli E482]
Length = 671
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ L HH+ Y+ +D P D YDR+ L L+ + PEL D P
Sbjct: 2 ESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|325496534|gb|EGC94393.1| NAD-dependent DNA ligase LigA [Escherichia fergusonii ECD227]
Length = 671
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ L HH+ Y+ +D P D YDR+ L L+ + PEL D P
Sbjct: 2 ESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|301022290|ref|ZP_07186186.1| DNA ligase, NAD-dependent [Escherichia coli MS 69-1]
gi|300397609|gb|EFJ81147.1| DNA ligase, NAD-dependent [Escherichia coli MS 69-1]
Length = 671
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ L HH+ Y+ +D P D YDR+ L L+ + PEL D P
Sbjct: 2 ESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|293415682|ref|ZP_06658325.1| DNA ligase [Escherichia coli B185]
gi|291433330|gb|EFF06309.1| DNA ligase [Escherichia coli B185]
Length = 671
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ L HH+ Y+ +D P D YDR+ L L+ + PEL D P
Sbjct: 2 ESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|218700877|ref|YP_002408506.1| NAD-dependent DNA ligase LigA [Escherichia coli IAI39]
gi|254781321|sp|B7NPU7|DNLJ_ECO7I RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|218370863|emb|CAR18680.1| DNA ligase, NAD(+)-dependent [Escherichia coli IAI39]
Length = 671
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ L HH+ Y+ +D P D YDR+ L L+ + PEL D P
Sbjct: 2 ESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|300923365|ref|ZP_07139409.1| DNA ligase, NAD-dependent [Escherichia coli MS 182-1]
gi|300420362|gb|EFK03673.1| DNA ligase, NAD-dependent [Escherichia coli MS 182-1]
Length = 671
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ L HH+ Y+ +D P D YDR+ L L+ + PEL D P
Sbjct: 2 ESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|254470147|ref|ZP_05083551.1| DNA ligase, NAD-dependent [Pseudovibrio sp. JE062]
gi|211960458|gb|EEA95654.1| DNA ligase, NAD-dependent [Pseudovibrio sp. JE062]
Length = 722
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 39/72 (54%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
K + +L+ EA +E+E L ++ + + Y+ D P+ D YD + R AL+ +FPE
Sbjct: 7 SQKDIEALNAEEAALELERLARLIAEYDEAYHTQDAPIVDDATYDGLRRRNAALEAKFPE 66
Query: 107 LFDEDHPWNTVG 118
L D P N VG
Sbjct: 67 LVRADSPSNRVG 78
>gi|91211748|ref|YP_541734.1| NAD-dependent DNA ligase LigA [Escherichia coli UTI89]
gi|117624619|ref|YP_853532.1| NAD-dependent DNA ligase LigA [Escherichia coli APEC O1]
gi|218559359|ref|YP_002392272.1| NAD-dependent DNA ligase LigA [Escherichia coli S88]
gi|237704934|ref|ZP_04535415.1| NAD-dependent DNA ligase LigA [Escherichia sp. 3_2_53FAA]
gi|331658566|ref|ZP_08359510.1| DNA ligase, NAD-dependent [Escherichia coli TA206]
gi|123084405|sp|Q1R8W1|DNLJ_ECOUT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|166215402|sp|A1ADS8|DNLJ_ECOK1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254781318|sp|B7MHR5|DNLJ_ECO45 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|91073322|gb|ABE08203.1| DNA ligase [Escherichia coli UTI89]
gi|115513743|gb|ABJ01818.1| NAD-dependent DNA ligase LigA [Escherichia coli APEC O1]
gi|218366128|emb|CAR03873.1| DNA ligase, NAD(+)-dependent [Escherichia coli S88]
gi|226901300|gb|EEH87559.1| NAD-dependent DNA ligase LigA [Escherichia sp. 3_2_53FAA]
gi|294491726|gb|ADE90482.1| DNA ligase, NAD-dependent [Escherichia coli IHE3034]
gi|307626016|gb|ADN70320.1| NAD-dependent DNA ligase LigA [Escherichia coli UM146]
gi|315288164|gb|EFU47564.1| DNA ligase, NAD-dependent [Escherichia coli MS 110-3]
gi|323949546|gb|EGB45434.1| DNA ligase [Escherichia coli H252]
gi|323955668|gb|EGB51426.1| DNA ligase [Escherichia coli H263]
gi|331054231|gb|EGI26258.1| DNA ligase, NAD-dependent [Escherichia coli TA206]
Length = 671
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ L HH+ Y+ +D P D YDR+ L L+ + PEL D P
Sbjct: 2 ESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|82777805|ref|YP_404154.1| NAD-dependent DNA ligase LigA [Shigella dysenteriae Sd197]
gi|309784866|ref|ZP_07679499.1| DNA ligase, NAD-dependent [Shigella dysenteriae 1617]
gi|123728534|sp|Q32DE2|DNLJ_SHIDS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|81241953|gb|ABB62663.1| DNA ligase [Shigella dysenteriae Sd197]
gi|308927236|gb|EFP72710.1| DNA ligase, NAD-dependent [Shigella dysenteriae 1617]
Length = 671
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ L HH+ Y+ +D P D YDR+ L L+ + PEL D P
Sbjct: 2 ESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|157161876|ref|YP_001459194.1| NAD-dependent DNA ligase LigA [Escherichia coli HS]
gi|253772690|ref|YP_003035521.1| NAD-dependent DNA ligase LigA [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254162394|ref|YP_003045502.1| NAD-dependent DNA ligase LigA [Escherichia coli B str. REL606]
gi|297517308|ref|ZP_06935694.1| NAD-dependent DNA ligase LigA [Escherichia coli OP50]
gi|300928569|ref|ZP_07144093.1| DNA ligase, NAD-dependent [Escherichia coli MS 187-1]
gi|190359254|sp|A8A2Q7|DNLJ_ECOHS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|157067556|gb|ABV06811.1| DNA ligase, NAD-dependent [Escherichia coli HS]
gi|242378018|emb|CAQ32789.1| DNA ligase [Escherichia coli BL21(DE3)]
gi|253323734|gb|ACT28336.1| DNA ligase, NAD-dependent [Escherichia coli 'BL21-Gold(DE3)pLysS
AG']
gi|253974295|gb|ACT39966.1| NAD-dependent DNA ligase LigA [Escherichia coli B str. REL606]
gi|253978462|gb|ACT44132.1| NAD-dependent DNA ligase LigA [Escherichia coli BL21(DE3)]
gi|300463441|gb|EFK26934.1| DNA ligase, NAD-dependent [Escherichia coli MS 187-1]
gi|323961212|gb|EGB56824.1| DNA ligase [Escherichia coli H489]
gi|323970900|gb|EGB66151.1| DNA ligase [Escherichia coli TA007]
gi|332344237|gb|AEE57571.1| DNA ligase, NAD-dependent LigA [Escherichia coli UMNK88]
Length = 671
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ L HH+ Y+ +D P D YDR+ L L+ + PEL D P
Sbjct: 2 ESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|324009590|gb|EGB78809.1| DNA ligase, NAD-dependent [Escherichia coli MS 57-2]
Length = 671
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ L HH+ Y+ +D P D YDR+ L L+ + PEL D P
Sbjct: 2 ESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|323170330|gb|EFZ55983.1| DNA ligase, NAD-dependent [Escherichia coli LT-68]
Length = 671
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ L HH+ Y+ +D P D YDR+ L L+ + PEL D P
Sbjct: 2 ESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|330912204|gb|EGH40714.1| DNA ligase [Escherichia coli AA86]
Length = 671
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ L HH+ Y+ +D P D YDR+ L L+ + PEL D P
Sbjct: 2 ESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|15802944|ref|NP_288973.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 EDL933]
gi|12516784|gb|AAG57530.1|AE005471_7 DNA ligase [Escherichia coli O157:H7 str. EDL933]
Length = 671
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ L HH+ Y+ +D P D YDR+ L L+ + PEL D P
Sbjct: 2 ESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|324112923|gb|EGC06899.1| DNA ligase [Escherichia fergusonii B253]
Length = 671
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ L HH+ Y+ +D P D YDR+ L L+ + PEL D P
Sbjct: 2 ESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|320185101|gb|EFW59881.1| DNA ligase [Shigella flexneri CDC 796-83]
Length = 671
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ L HH+ Y+ +D P D YDR+ L L+ + PEL D P
Sbjct: 2 ESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|146615|gb|AAA24071.1| lig peptide [Escherichia coli]
Length = 671
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ L HH+ Y+ +D P D YDR+ L L+ + PEL D P
Sbjct: 2 ESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|74312947|ref|YP_311366.1| NAD-dependent DNA ligase LigA [Shigella sonnei Ss046]
gi|123732314|sp|Q3YZD1|DNLJ_SHISS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|73856424|gb|AAZ89131.1| DNA ligase [Shigella sonnei Ss046]
gi|323169148|gb|EFZ54825.1| DNA ligase, NAD-dependent [Shigella sonnei 53G]
Length = 671
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ L HH+ Y+ +D P D YDR+ L L+ + PEL D P
Sbjct: 2 ESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|320196260|gb|EFW70884.1| DNA ligase [Escherichia coli WV_060327]
Length = 671
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ L HH+ Y+ +D P D YDR+ L L+ + PEL D P
Sbjct: 2 ESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|331648073|ref|ZP_08349163.1| DNA ligase, NAD-dependent [Escherichia coli M605]
gi|331042933|gb|EGI15073.1| DNA ligase, NAD-dependent [Escherichia coli M605]
Length = 671
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ L HH+ Y+ +D P D YDR+ L L+ + PEL D P
Sbjct: 2 ESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|26248787|ref|NP_754827.1| NAD-dependent DNA ligase LigA [Escherichia coli CFT073]
gi|170680446|ref|YP_001744602.1| NAD-dependent DNA ligase LigA [Escherichia coli SMS-3-5]
gi|227887457|ref|ZP_04005262.1| NAD-dependent DNA ligase LigA [Escherichia coli 83972]
gi|300981618|ref|ZP_07175608.1| DNA ligase, NAD-dependent [Escherichia coli MS 45-1]
gi|301046300|ref|ZP_07193464.1| DNA ligase, NAD-dependent [Escherichia coli MS 185-1]
gi|81475373|sp|Q8FFC1|DNLJ_ECOL6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254781328|sp|B1LMK5|DNLJ_ECOSM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|26109193|gb|AAN81395.1|AE016764_77 DNA ligase [Escherichia coli CFT073]
gi|170518164|gb|ACB16342.1| DNA ligase, NAD-dependent [Escherichia coli SMS-3-5]
gi|227835807|gb|EEJ46273.1| NAD-dependent DNA ligase LigA [Escherichia coli 83972]
gi|300301715|gb|EFJ58100.1| DNA ligase, NAD-dependent [Escherichia coli MS 185-1]
gi|300408962|gb|EFJ92500.1| DNA ligase, NAD-dependent [Escherichia coli MS 45-1]
gi|307554453|gb|ADN47228.1| DNA ligase [Escherichia coli ABU 83972]
gi|315293473|gb|EFU52825.1| DNA ligase, NAD-dependent [Escherichia coli MS 153-1]
gi|323977408|gb|EGB72494.1| DNA ligase [Escherichia coli TW10509]
Length = 671
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ L HH+ Y+ +D P D YDR+ L L+ + PEL D P
Sbjct: 2 ESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|110642595|ref|YP_670325.1| NAD-dependent DNA ligase LigA [Escherichia coli 536]
gi|191174600|ref|ZP_03036093.1| DNA ligase, NAD-dependent [Escherichia coli F11]
gi|300997757|ref|ZP_07181842.1| DNA ligase, NAD-dependent [Escherichia coli MS 200-1]
gi|306814500|ref|ZP_07448662.1| NAD-dependent DNA ligase LigA [Escherichia coli NC101]
gi|122958158|sp|Q0TF55|DNLJ_ECOL5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|110344187|gb|ABG70424.1| DNA ligase [Escherichia coli 536]
gi|190905126|gb|EDV64772.1| DNA ligase, NAD-dependent [Escherichia coli F11]
gi|222034142|emb|CAP76883.1| DNA ligase [Escherichia coli LF82]
gi|300304141|gb|EFJ58661.1| DNA ligase, NAD-dependent [Escherichia coli MS 200-1]
gi|305851894|gb|EFM52346.1| NAD-dependent DNA ligase LigA [Escherichia coli NC101]
gi|312947007|gb|ADR27834.1| NAD-dependent DNA ligase LigA [Escherichia coli O83:H1 str. NRG
857C]
gi|324011127|gb|EGB80346.1| DNA ligase, NAD-dependent [Escherichia coli MS 60-1]
Length = 671
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ L HH+ Y+ +D P D YDR+ L L+ + PEL D P
Sbjct: 2 ESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|157156100|ref|YP_001463741.1| NAD-dependent DNA ligase LigA [Escherichia coli E24377A]
gi|193066723|ref|ZP_03047750.1| DNA ligase, NAD-dependent [Escherichia coli E22]
gi|194430461|ref|ZP_03062941.1| DNA ligase, NAD-dependent [Escherichia coli B171]
gi|209919893|ref|YP_002293977.1| NAD-dependent DNA ligase LigA [Escherichia coli SE11]
gi|218554944|ref|YP_002387857.1| NAD-dependent DNA ligase LigA [Escherichia coli IAI1]
gi|218696047|ref|YP_002403714.1| NAD-dependent DNA ligase LigA [Escherichia coli 55989]
gi|256017438|ref|ZP_05431303.1| NAD-dependent DNA ligase LigA [Shigella sp. D9]
gi|260845052|ref|YP_003222830.1| DNA ligase LigA, NAD(+)-dependent [Escherichia coli O103:H2 str.
12009]
gi|260856513|ref|YP_003230404.1| DNA ligase LigA, NAD(+)-dependent [Escherichia coli O26:H11 str.
11368]
gi|260869108|ref|YP_003235510.1| DNA ligase LigA, NAD(+)-dependent [Escherichia coli O111:H- str.
11128]
gi|293446772|ref|ZP_06663194.1| DNA ligase [Escherichia coli B088]
gi|300817349|ref|ZP_07097566.1| DNA ligase, NAD-dependent [Escherichia coli MS 107-1]
gi|300820921|ref|ZP_07101071.1| DNA ligase, NAD-dependent [Escherichia coli MS 119-7]
gi|300903139|ref|ZP_07121073.1| DNA ligase, NAD-dependent [Escherichia coli MS 84-1]
gi|300921341|ref|ZP_07137704.1| DNA ligase, NAD-dependent [Escherichia coli MS 115-1]
gi|301306250|ref|ZP_07212323.1| DNA ligase, NAD-dependent [Escherichia coli MS 124-1]
gi|301328910|ref|ZP_07221944.1| DNA ligase, NAD-dependent [Escherichia coli MS 78-1]
gi|307312589|ref|ZP_07592222.1| DNA ligase, NAD-dependent [Escherichia coli W]
gi|309794543|ref|ZP_07688966.1| DNA ligase, NAD-dependent [Escherichia coli MS 145-7]
gi|331669152|ref|ZP_08370000.1| DNA ligase, NAD-dependent [Escherichia coli TA271]
gi|331678399|ref|ZP_08379074.1| DNA ligase, NAD-dependent [Escherichia coli H591]
gi|332278439|ref|ZP_08390852.1| NAD-dependent DNA ligase LigA [Shigella sp. D9]
gi|190359253|sp|A7ZPL2|DNLJ_ECO24 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254781319|sp|B7LCF6|DNLJ_ECO55 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254781323|sp|B7M6S1|DNLJ_ECO8A RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254781327|sp|B6I4Y8|DNLJ_ECOSE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|157078130|gb|ABV17838.1| DNA ligase, NAD-dependent [Escherichia coli E24377A]
gi|192925627|gb|EDV80294.1| DNA ligase, NAD-dependent [Escherichia coli E22]
gi|194411494|gb|EDX27836.1| DNA ligase, NAD-dependent [Escherichia coli B171]
gi|209913152|dbj|BAG78226.1| DNA ligase [Escherichia coli SE11]
gi|218352779|emb|CAU98567.1| DNA ligase, NAD(+)-dependent [Escherichia coli 55989]
gi|218361712|emb|CAQ99309.1| DNA ligase, NAD(+)-dependent [Escherichia coli IAI1]
gi|257755162|dbj|BAI26664.1| DNA ligase LigA, NAD(+)-dependent [Escherichia coli O26:H11 str.
11368]
gi|257760199|dbj|BAI31696.1| DNA ligase LigA, NAD(+)-dependent [Escherichia coli O103:H2 str.
12009]
gi|257765464|dbj|BAI36959.1| DNA ligase LigA, NAD(+)-dependent [Escherichia coli O111:H- str.
11128]
gi|291323602|gb|EFE63030.1| DNA ligase [Escherichia coli B088]
gi|300404835|gb|EFJ88373.1| DNA ligase, NAD-dependent [Escherichia coli MS 84-1]
gi|300411729|gb|EFJ95039.1| DNA ligase, NAD-dependent [Escherichia coli MS 115-1]
gi|300526674|gb|EFK47743.1| DNA ligase, NAD-dependent [Escherichia coli MS 119-7]
gi|300529975|gb|EFK51037.1| DNA ligase, NAD-dependent [Escherichia coli MS 107-1]
gi|300838493|gb|EFK66253.1| DNA ligase, NAD-dependent [Escherichia coli MS 124-1]
gi|300844712|gb|EFK72472.1| DNA ligase, NAD-dependent [Escherichia coli MS 78-1]
gi|306907512|gb|EFN38016.1| DNA ligase, NAD-dependent [Escherichia coli W]
gi|308121999|gb|EFO59261.1| DNA ligase, NAD-dependent [Escherichia coli MS 145-7]
gi|315061736|gb|ADT76063.1| DNA ligase, NAD(+)-dependent [Escherichia coli W]
gi|315256427|gb|EFU36395.1| DNA ligase, NAD-dependent [Escherichia coli MS 85-1]
gi|320199974|gb|EFW74563.1| DNA ligase [Escherichia coli EC4100B]
gi|323156318|gb|EFZ42476.1| DNA ligase, NAD-dependent [Escherichia coli EPECa14]
gi|323159458|gb|EFZ45441.1| DNA ligase, NAD-dependent [Escherichia coli E128010]
gi|323177463|gb|EFZ63051.1| DNA ligase, NAD-dependent [Escherichia coli 1180]
gi|323184284|gb|EFZ69660.1| DNA ligase, NAD-dependent [Escherichia coli 1357]
gi|323377683|gb|ADX49951.1| DNA ligase, NAD-dependent [Escherichia coli KO11]
gi|323944634|gb|EGB40701.1| DNA ligase [Escherichia coli H120]
gi|324020175|gb|EGB89394.1| DNA ligase, NAD-dependent [Escherichia coli MS 117-3]
gi|324118125|gb|EGC12023.1| DNA ligase [Escherichia coli E1167]
gi|331064346|gb|EGI36257.1| DNA ligase, NAD-dependent [Escherichia coli TA271]
gi|331074859|gb|EGI46179.1| DNA ligase, NAD-dependent [Escherichia coli H591]
gi|332100791|gb|EGJ04137.1| NAD-dependent DNA ligase LigA [Shigella sp. D9]
Length = 671
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ L HH+ Y+ +D P D YDR+ L L+ + PEL D P
Sbjct: 2 ESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|15832537|ref|NP_311310.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str. Sakai]
gi|168768500|ref|ZP_02793507.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4486]
gi|168778374|ref|ZP_02803381.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4076]
gi|208813694|ref|ZP_03255023.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4045]
gi|208821178|ref|ZP_03261498.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4042]
gi|209399429|ref|YP_002271890.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4115]
gi|217326968|ref|ZP_03443051.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. TW14588]
gi|254794365|ref|YP_003079202.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str.
TW14359]
gi|261223146|ref|ZP_05937427.1| DNA ligase, NAD(+)-dependent [Escherichia coli O157:H7 str.
FRIK2000]
gi|261259301|ref|ZP_05951834.1| DNA ligase, NAD(+)-dependent [Escherichia coli O157:H7 str.
FRIK966]
gi|291283640|ref|YP_003500458.1| DNA ligase [Escherichia coli O55:H7 str. CB9615]
gi|166215595|sp|Q8XBL5|DNLJ_ECO57 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254781320|sp|B5YZV8|DNLJ_ECO5E RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|13362753|dbj|BAB36706.1| DNA ligase [Escherichia coli O157:H7 str. Sakai]
gi|189003243|gb|EDU72229.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4076]
gi|189362250|gb|EDU80669.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4486]
gi|208734971|gb|EDZ83658.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4045]
gi|208741301|gb|EDZ88983.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4042]
gi|209160829|gb|ACI38262.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4115]
gi|209764248|gb|ACI80436.1| DNA ligase [Escherichia coli]
gi|209764250|gb|ACI80437.1| DNA ligase [Escherichia coli]
gi|209764252|gb|ACI80438.1| DNA ligase [Escherichia coli]
gi|209764256|gb|ACI80440.1| DNA ligase [Escherichia coli]
gi|217319335|gb|EEC27760.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. TW14588]
gi|254593765|gb|ACT73126.1| DNA ligase, NAD(+)-dependent [Escherichia coli O157:H7 str.
TW14359]
gi|290763513|gb|ADD57474.1| DNA ligase [Escherichia coli O55:H7 str. CB9615]
gi|320188751|gb|EFW63410.1| DNA ligase [Escherichia coli O157:H7 str. EC1212]
gi|320640925|gb|EFX10409.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str. G5101]
gi|320646206|gb|EFX15133.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H- str.
493-89]
gi|320651712|gb|EFX20092.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H- str. H
2687]
gi|320657097|gb|EFX24906.1| NAD-dependent DNA ligase LigA [Escherichia coli O55:H7 str. 3256-97
TW 07815]
gi|320662857|gb|EFX30185.1| NAD-dependent DNA ligase LigA [Escherichia coli O55:H7 str. USDA
5905]
gi|320667743|gb|EFX34654.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str.
LSU-61]
gi|326340214|gb|EGD64018.1| DNA ligase [Escherichia coli O157:H7 str. 1125]
gi|326344216|gb|EGD67977.1| DNA ligase [Escherichia coli O157:H7 str. 1044]
Length = 671
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ L HH+ Y+ +D P D YDR+ L L+ + PEL D P
Sbjct: 2 ESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|319405996|emb|CBI79627.1| DNA ligase [Bartonella sp. AR 15-3]
Length = 718
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
+ +L+ EA E+E+L K H Y+R D P +D YD + R + ++ FPEL
Sbjct: 6 IKNLTALEAEGELEWLAKEIARHDVLYHRDDQPEISDAEYDALRRRNEEIEALFPELVRV 65
Query: 111 DHPWNTVG 118
D P + +G
Sbjct: 66 DSPSSKIG 73
>gi|209764254|gb|ACI80439.1| DNA ligase [Escherichia coli]
Length = 671
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ L HH+ Y+ +D P D YDR+ L L+ + PEL D P
Sbjct: 2 ESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|319404500|emb|CBI78105.1| DNA ligase [Bartonella rochalimae ATCC BAA-1498]
Length = 725
Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
+ +L+ EA E+E+L K H Y+R D P +D YD + R + ++ FPEL
Sbjct: 6 IKNLTALEAASELEWLAKEIARHDVLYHRDDQPEISDAEYDALCRRNEEIEALFPELIRA 65
Query: 111 DHPWNTVG 118
D P + +G
Sbjct: 66 DSPSSKIG 73
>gi|253988889|ref|YP_003040245.1| NAD-dependent DNA ligase LigA [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|253780339|emb|CAQ83500.1| DNA ligase [Photorhabdus asymbiotica]
Length = 672
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 31/59 (52%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++E L K HH+ Y+ +D P +D YDR+ + L L+ Q PEL D P VG
Sbjct: 5 AQQIENLRKTLRHHEYLYHVMDAPEISDAEYDRLMQELKTLEGQHPELITSDSPTQRVG 63
>gi|87199755|ref|YP_497012.1| DNA ligase, NAD-dependent [Novosphingobium aromaticivorans DSM
12444]
gi|123763512|sp|Q2G7J5|DNLJ_NOVAD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|87135436|gb|ABD26178.1| DNA ligase, NAD-dependent [Novosphingobium aromaticivorans DSM
12444]
Length = 721
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 34/68 (50%)
Query: 52 TSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
++L++ EA E+ L + H + Y+ D+P TD YD + R L+ FP L D
Sbjct: 4 SALTEAEAANELMRLARQIAKHNRLYHAEDSPEITDAEYDALVRRNAELEAAFPHLIRPD 63
Query: 112 HPWNTVGY 119
P +G+
Sbjct: 64 SPSAQIGH 71
>gi|149184723|ref|ZP_01863041.1| DNA ligase [Erythrobacter sp. SD-21]
gi|148832043|gb|EDL50476.1| DNA ligase [Erythrobacter sp. SD-21]
Length = 690
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
+ +K V +++ EA E+ L + H K Y+ D P TD +D + R L+EQF
Sbjct: 1 MPASKPVD-MTEAEAANELMRLARAIAKHNKLYHAEDAPEITDQEFDALVRRNAELEEQF 59
Query: 105 PELFDEDHPWNTVGY 119
P L ED P VG+
Sbjct: 60 PHLVREDSPSKVVGH 74
>gi|222099565|ref|YP_002534133.1| DNA ligase [Thermotoga neapolitana DSM 4359]
gi|254781438|sp|B9K734|DNLJ_THENN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|221571955|gb|ACM22767.1| DNA ligase [Thermotoga neapolitana DSM 4359]
Length = 693
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 34/63 (53%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
E + EVE L + +H YY L++P+ TD YDR+ RL L+ +PEL D P
Sbjct: 12 PKEVIEEVERLREEIEYHNYRYYVLNDPVITDEEYDRLMRRLIELERMYPELVTPDSPTQ 71
Query: 116 TVG 118
VG
Sbjct: 72 RVG 74
>gi|289208742|ref|YP_003460808.1| DNA ligase, NAD-dependent [Thioalkalivibrio sp. K90mix]
gi|288944373|gb|ADC72072.1| DNA ligase, NAD-dependent [Thioalkalivibrio sp. K90mix]
Length = 697
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 35/71 (49%)
Query: 48 AKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
++ T+ + GE +E L + HH YY LD+P +D +D + L+ L+ P+L
Sbjct: 7 SRDGTTGAAGEVGERIEQLRRQIEHHNYRYYVLDDPEVSDAEFDALMRELEQLEADHPDL 66
Query: 108 FDEDHPWNTVG 118
D P VG
Sbjct: 67 VTPDSPTQRVG 77
>gi|323188282|gb|EFZ73575.1| DNA ligase, NAD-dependent [Escherichia coli RN587/1]
Length = 671
Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ L HH+ Y+ +D P D YDR+ L L+ + PEL D P
Sbjct: 2 ESIEQQLIELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|170767420|ref|ZP_02901873.1| DNA ligase, NAD-dependent [Escherichia albertii TW07627]
gi|170123754|gb|EDS92685.1| DNA ligase, NAD-dependent [Escherichia albertii TW07627]
Length = 671
Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ L HH+ Y+ +D P D YDR+ L L+ + PEL D P
Sbjct: 2 ESIEQKLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAKHPELITPDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|78043193|ref|YP_359946.1| DNA ligase, NAD-dependent [Carboxydothermus hydrogenoformans
Z-2901]
gi|123743192|sp|Q3AD38|DNLJ_CARHZ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|77995308|gb|ABB14207.1| DNA ligase, NAD-dependent [Carboxydothermus hydrogenoformans
Z-2901]
Length = 664
Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 32/65 (49%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K +E L + +H YY LD P +D YDR+ L +L++Q+PE D P
Sbjct: 1 MDKEAVKKRIEELRALLHYHNYRYYVLDQPEISDAEYDRMLRELISLEQQYPEFITPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SQRVG 65
>gi|215487666|ref|YP_002330097.1| NAD-dependent DNA ligase LigA [Escherichia coli O127:H6 str.
E2348/69]
gi|312967700|ref|ZP_07781915.1| DNA ligase, NAD-dependent [Escherichia coli 2362-75]
gi|254781317|sp|B7UGB2|DNLJ_ECO27 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|215265738|emb|CAS10145.1| DNA ligase, NAD(+)-dependent [Escherichia coli O127:H6 str.
E2348/69]
gi|312287897|gb|EFR15802.1| DNA ligase, NAD-dependent [Escherichia coli 2362-75]
Length = 671
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ L HH+ Y+ +D P D YDR+ L L+ + PEL D P
Sbjct: 2 ESIEQQLIELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|226945096|ref|YP_002800169.1| NAD-dependent DNA ligase LigA [Azotobacter vinelandii DJ]
gi|254781546|sp|C1DN27|DNLJ_AZOVD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|226720023|gb|ACO79194.1| DNA ligase, NAD-dependent [Azotobacter vinelandii DJ]
Length = 784
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 54 LSKGE-AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDH 112
++ + A + L H YY LD P D YDR+ L AL+ + PEL +
Sbjct: 1 MTDAQTAAERIARLRSEIDEHNYRYYVLDAPSVPDAEYDRLFNELKALEAEHPELVTPES 60
Query: 113 PWNTVG 118
P VG
Sbjct: 61 PTQRVG 66
>gi|15642875|ref|NP_227916.1| DNA ligase [Thermotoga maritima MSB8]
gi|7674016|sp|Q9WXV5|DNLJ_THEMA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|4980590|gb|AAD35194.1|AE001696_8 DNA ligase [Thermotoga maritima MSB8]
Length = 688
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 34/63 (53%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
E + EVE L + +H YY L++P+ TD YDR+ RL L+ +PEL D P
Sbjct: 7 PKEVIEEVERLREEIEYHNYRYYVLNDPVITDEEYDRLMRRLIELERMYPELVTPDSPTQ 66
Query: 116 TVG 118
VG
Sbjct: 67 RVG 69
>gi|310823543|ref|YP_003955901.1| DNA ligase [Stigmatella aurantiaca DW4/3-1]
gi|309396615|gb|ADO74074.1| DNA ligase [Stigmatella aurantiaca DW4/3-1]
Length = 673
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 29/65 (44%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ A L + HH YY LD+P +D YDR+ L L+ QFP L D P
Sbjct: 1 MDLKTAETRARDLRRELAHHNHRYYVLDSPEVSDAEYDRLMRELQGLEAQFPALATPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|332982281|ref|YP_004463722.1| DNA ligase, NAD-dependent [Mahella australiensis 50-1 BON]
gi|332699959|gb|AEE96900.1| DNA ligase, NAD-dependent [Mahella australiensis 50-1 BON]
Length = 665
Score = 111 bits (277), Expect = 5e-23, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 32/62 (51%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ + V L +I HH YY LD+P +D YD + L+ L+ ++PE+ D P
Sbjct: 5 EDVIQRVNELRQIIEHHNYMYYVLDSPEISDAEYDALMRELEQLESKYPEIITPDSPTQR 64
Query: 117 VG 118
VG
Sbjct: 65 VG 66
>gi|254479199|ref|ZP_05092546.1| NAD-dependent DNA ligase adenylation domain subfamily
[Carboxydibrachium pacificum DSM 12653]
gi|214034862|gb|EEB75589.1| NAD-dependent DNA ligase adenylation domain subfamily
[Carboxydibrachium pacificum DSM 12653]
Length = 271
Score = 110 bits (276), Expect = 5e-23, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 32/65 (49%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + EA +E L + +H YY LD P +D YD + L L+E++PE D P
Sbjct: 15 MDREEARKRIEELREKINYHNYRYYVLDQPEISDYEYDMLMRELIELEEKYPEFKTPDSP 74
Query: 114 WNTVG 118
VG
Sbjct: 75 SQRVG 79
>gi|15603581|ref|NP_246655.1| NAD-dependent DNA ligase LigA [Pasteurella multocida subsp.
multocida str. Pm70]
gi|81636517|sp|Q9CKA9|DNLJ_PASMU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|12722128|gb|AAK03800.1| Lig [Pasteurella multocida subsp. multocida str. Pm70]
Length = 673
Score = 110 bits (276), Expect = 5e-23, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 34/62 (54%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+E+E L + +H+ Y+ LDNP D YDR+ RL L++Q+P+ F D P
Sbjct: 3 DSIKLEIEQLRQTLRYHEYQYHVLDNPQIPDAEYDRLFHRLKTLEQQYPQWFSPDSPTQR 62
Query: 117 VG 118
VG
Sbjct: 63 VG 64
>gi|320180401|gb|EFW55332.1| DNA ligase [Shigella boydii ATCC 9905]
Length = 671
Score = 110 bits (276), Expect = 5e-23, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ L HH+ Y+ +D P D YDR+ L L+ + PEL D P
Sbjct: 2 ESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELCELETKHPELITPDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|332092973|gb|EGI98039.1| DNA ligase, NAD-dependent [Shigella boydii 3594-74]
Length = 671
Score = 110 bits (276), Expect = 5e-23, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ L HH+ Y+ +D P D YDR+ L L+ + PEL D P
Sbjct: 2 ESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELCELETKHPELITPDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|333016518|gb|EGK35849.1| DNA ligase, NAD-dependent [Shigella flexneri K-304]
Length = 671
Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ L HH+ Y+ +D P D YDR+ L L+ + PEL D P
Sbjct: 2 ESIEQQLTELRTTLCHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|330808456|ref|YP_004352918.1| DNA ligase (NAD(+)) [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327376564|gb|AEA67914.1| DNA ligase (NAD(+)) [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 785
Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 27/60 (45%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L H Y+ LD P D YDR+ L AL+EQ PEL D P VG
Sbjct: 4 VETRIQQLRTELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEEQHPELVTSDSPTQRVG 63
>gi|82544871|ref|YP_408818.1| NAD-dependent DNA ligase LigA [Shigella boydii Sb227]
gi|123741957|sp|Q31Y68|DNLJ_SHIBS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|81246282|gb|ABB66990.1| DNA ligase [Shigella boydii Sb227]
Length = 671
Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ L HH+ Y+ +D P D YDR+ L L+ + PEL D P
Sbjct: 2 ESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELCELETKHPELITPDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|322437173|ref|YP_004219385.1| DNA ligase, NAD-dependent [Acidobacterium sp. MP5ACTX9]
gi|321164900|gb|ADW70605.1| DNA ligase, NAD-dependent [Acidobacterium sp. MP5ACTX9]
Length = 704
Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SKG +V+ L + HH+ YY +D P TDG YD + RL AL+ + PE+ D P
Sbjct: 1 MSKGSVEEQVKELREQLEHHEHLYYVMDTPELTDGQYDSLMNRLKALEAEHPEMVTSDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|260598800|ref|YP_003211371.1| NAD-dependent DNA ligase LigA [Cronobacter turicensis z3032]
gi|260217977|emb|CBA32625.1| DNA ligase [Cronobacter turicensis z3032]
Length = 672
Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 28/62 (45%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ L HH+ Y+ +D P D YDR+ L AL+E PEL D P
Sbjct: 2 ESIEEKLTQLRTTLRHHEFLYHVMDAPEVPDAEYDRLMRELRALEEAHPELVTPDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|290508381|ref|ZP_06547752.1| DNA ligase, NAD-dependent [Klebsiella sp. 1_1_55]
gi|289777775|gb|EFD85772.1| DNA ligase, NAD-dependent [Klebsiella sp. 1_1_55]
Length = 671
Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 27/60 (45%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L HH+ Y+ +D P D YDR+ L L+ Q PEL D P VG
Sbjct: 4 IEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELESQHPELITPDSPTQRVG 63
>gi|154245706|ref|YP_001416664.1| DNA ligase, NAD-dependent [Xanthobacter autotrophicus Py2]
gi|254782313|sp|A7IG64|DNLJ_XANP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|154159791|gb|ABS67007.1| DNA ligase, NAD-dependent [Xanthobacter autotrophicus Py2]
Length = 720
Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 37/72 (51%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
+A V LS EA E + L + H YYR D P+ +D YD + R +A++E+FP
Sbjct: 17 RAIPVDDLSPAEAASEHKALAQEITGHDAAYYREDAPVVSDAEYDALRHRYEAIEERFPG 76
Query: 107 LFDEDHPWNTVG 118
L ED VG
Sbjct: 77 LRGEDSLSEKVG 88
>gi|206579402|ref|YP_002237241.1| DNA ligase, NAD-dependent [Klebsiella pneumoniae 342]
gi|288934177|ref|YP_003438236.1| DNA ligase, NAD-dependent [Klebsiella variicola At-22]
gi|254781350|sp|B5XVT4|DNLJ_KLEP3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|206568460|gb|ACI10236.1| DNA ligase, NAD-dependent [Klebsiella pneumoniae 342]
gi|288888906|gb|ADC57224.1| DNA ligase, NAD-dependent [Klebsiella variicola At-22]
Length = 671
Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 27/60 (45%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L HH+ Y+ +D P D YDR+ L L+ Q PEL D P VG
Sbjct: 4 IEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELESQHPELITPDSPTQRVG 63
>gi|161502427|ref|YP_001569539.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. arizonae
serovar 62:z4,z23:-- str. RSK2980]
gi|190359281|sp|A9MIG0|DNLJ_SALAR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|160863774|gb|ABX20397.1| hypothetical protein SARI_00461 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 671
Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 28/60 (46%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L HH+ Y+ +D P D YDR+ L AL+ Q P+L D P VG
Sbjct: 4 IEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRALEAQRPDLITPDSPTQRVG 63
>gi|290476106|ref|YP_003469005.1| DNA ligase [Xenorhabdus bovienii SS-2004]
gi|289175438|emb|CBJ82241.1| DNA ligase [Xenorhabdus bovienii SS-2004]
Length = 672
Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 29/62 (46%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ ++ L HH+ Y+ +D P D YDR+ L L+EQ PEL D P
Sbjct: 2 ESIIEKINKLRATLRHHEYLYHVMDAPEIPDAEYDRLLRELKVLEEQHPELITADSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|24113756|ref|NP_708266.1| NAD-dependent DNA ligase LigA [Shigella flexneri 2a str. 301]
gi|30063805|ref|NP_837976.1| NAD-dependent DNA ligase LigA [Shigella flexneri 2a str. 2457T]
gi|110806352|ref|YP_689872.1| NAD-dependent DNA ligase LigA [Shigella flexneri 5 str. 8401]
gi|81723177|sp|Q83K81|DNLJ_SHIFL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|122366427|sp|Q0T298|DNLJ_SHIF8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|24052834|gb|AAN43973.1| DNA ligase [Shigella flexneri 2a str. 301]
gi|30042060|gb|AAP17786.1| DNA ligase [Shigella flexneri 2a str. 2457T]
gi|110615900|gb|ABF04567.1| DNA ligase [Shigella flexneri 5 str. 8401]
gi|281601828|gb|ADA74812.1| DNA ligase, NAD-dependent [Shigella flexneri 2002017]
gi|313650866|gb|EFS15266.1| DNA ligase, NAD-dependent [Shigella flexneri 2a str. 2457T]
gi|332755453|gb|EGJ85817.1| DNA ligase, NAD-dependent [Shigella flexneri K-671]
gi|332756263|gb|EGJ86614.1| DNA ligase, NAD-dependent [Shigella flexneri 2747-71]
gi|333002064|gb|EGK21630.1| DNA ligase, NAD-dependent [Shigella flexneri K-218]
Length = 671
Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ L HH+ Y+ +D P D YDR+ L L+ + PEL D P
Sbjct: 2 ESIEQQLTELRTTLCHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|237732406|ref|ZP_04562887.1| NAD-dependent DNA ligase LigA [Citrobacter sp. 30_2]
gi|226907945|gb|EEH93863.1| NAD-dependent DNA ligase LigA [Citrobacter sp. 30_2]
Length = 671
Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ L HH+ Y+ +D P D YDR+ L L+ Q PEL D P
Sbjct: 2 ESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMCELRELEAQHPELITPDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|333001543|gb|EGK21111.1| DNA ligase, NAD-dependent [Shigella flexneri VA-6]
gi|333002206|gb|EGK21770.1| DNA ligase, NAD-dependent [Shigella flexneri K-272]
gi|333016032|gb|EGK35364.1| DNA ligase, NAD-dependent [Shigella flexneri K-227]
Length = 671
Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ L HH+ Y+ +D P D YDR+ L L+ + PEL D P
Sbjct: 2 ESIEQQLTELRTTLCHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|187477571|ref|YP_785595.1| DNA ligase [Bordetella avium 197N]
gi|123752160|sp|Q2KUU5|DNLJ_BORA1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|115422157|emb|CAJ48681.1| DNA ligase [Bordetella avium 197N]
Length = 695
Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 26/63 (41%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
+ A + L H YY D P TD YD + L AL+ Q PEL D P
Sbjct: 5 EQAAREQAARLRAEIAQHNIRYYVYDEPSITDADYDALMRELMALEAQHPELVTPDSPTQ 64
Query: 116 TVG 118
VG
Sbjct: 65 RVG 67
>gi|156933031|ref|YP_001436947.1| NAD-dependent DNA ligase LigA [Cronobacter sakazakii ATCC BAA-894]
gi|166215403|sp|A7MKW4|DNLJ_ENTS8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|156531285|gb|ABU76111.1| hypothetical protein ESA_00834 [Cronobacter sakazakii ATCC BAA-894]
Length = 672
Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 28/62 (45%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ L HH+ Y+ +D P D YDR+ L AL+E PEL D P
Sbjct: 2 ESIEEKLTQLRTTLRHHEFLYHVMDAPEVPDAEYDRLMRELRALEEAHPELVTPDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|227822641|ref|YP_002826613.1| NAD-dependent DNA ligase LigA [Sinorhizobium fredii NGR234]
gi|254781400|sp|C3MEL9|DNLJ_RHISN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|227341642|gb|ACP25860.1| DNA ligase [Sinorhizobium fredii NGR234]
Length = 717
Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 38/74 (51%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
L++ K V L++ EA E+ +LV H Y+ D P +D YD + R D ++E F
Sbjct: 2 LNEKKPVEQLTETEAAEELAFLVTELARHDALYHGQDAPEISDADYDALKRRNDLIEELF 61
Query: 105 PELFDEDHPWNTVG 118
P L ED P +G
Sbjct: 62 PALIREDSPSRKIG 75
>gi|37525354|ref|NP_928698.1| NAD-dependent DNA ligase LigA [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|81416713|sp|Q7MBH2|DNLJ_PHOLL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|36784781|emb|CAE13691.1| DNA ligase (polydeoxyribonucleotide synthase [NAD+]) [Photorhabdus
luminescens subsp. laumondii TTO1]
Length = 672
Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 31/59 (52%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++E L HH+ Y+ +D P D YDR+ + L L+EQ+PEL D P +G
Sbjct: 5 AQQIEKLRTTLRHHEYLYHVMDAPEIPDAEYDRLMQELQDLEEQYPELITSDSPTQRIG 63
>gi|197105771|ref|YP_002131148.1| DNA ligase, NAD-dependent [Phenylobacterium zucineum HLK1]
gi|254781386|sp|B4RFE9|DNLJ_PHEZH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|196479191|gb|ACG78719.1| DNA ligase, NAD-dependent [Phenylobacterium zucineum HLK1]
Length = 692
Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 34/70 (48%)
Query: 49 KKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF 108
K V SL++ EA E+ L H YYR D P +D YD + R D L+ FP L
Sbjct: 2 KSVESLTEAEAAEELTRLADEIAAHDIRYYREDAPTISDAAYDALRRRNDELEAAFPHLI 61
Query: 109 DEDHPWNTVG 118
E+ P +G
Sbjct: 62 RENSPSLRIG 71
>gi|325293451|ref|YP_004279315.1| DNA ligase [Agrobacterium sp. H13-3]
gi|325061304|gb|ADY64995.1| DNA ligase [Agrobacterium sp. H13-3]
Length = 724
Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 34/73 (46%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
V +L++ EA E+ +L H Y+ D P +D YD + R DA++ FP
Sbjct: 4 DQIPVENLTELEASSELAFLAAELARHDALYHGKDAPEISDADYDALKRRNDAIEAAFPA 63
Query: 107 LFDEDHPWNTVGY 119
L D P VG+
Sbjct: 64 LVRADSPSKKVGF 76
>gi|268593162|ref|ZP_06127383.1| DNA ligase, NAD-dependent [Providencia rettgeri DSM 1131]
gi|291311208|gb|EFE51661.1| DNA ligase, NAD-dependent [Providencia rettgeri DSM 1131]
Length = 671
Score = 109 bits (274), Expect = 9e-23, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 31/59 (52%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E++ L K HH+ Y+ LD P D YD++ +RL ++ Q PEL D P VG
Sbjct: 4 KQEIDELKKQLRHHEYQYHVLDAPEIPDVEYDKLMQRLKEIEAQHPELVTSDSPTQRVG 62
>gi|322613832|gb|EFY10771.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|322617441|gb|EFY14340.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|322624929|gb|EFY21758.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|322629628|gb|EFY26404.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|322633942|gb|EFY30679.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|322635621|gb|EFY32332.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|322639981|gb|EFY36651.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|322644326|gb|EFY40867.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|322655311|gb|EFY51620.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|322658357|gb|EFY54623.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|322664357|gb|EFY60554.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|322668412|gb|EFY64568.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|322673252|gb|EFY69358.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|322676644|gb|EFY72712.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|322683394|gb|EFY79408.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|322685720|gb|EFY81713.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|323192602|gb|EFZ77831.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|323196835|gb|EFZ81978.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|323202141|gb|EFZ87199.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|323208024|gb|EFZ92969.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|323212850|gb|EFZ97659.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|323217119|gb|EGA01841.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|323219619|gb|EGA04102.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|323229192|gb|EGA13316.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|323235493|gb|EGA19577.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|323237321|gb|EGA21384.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|323245552|gb|EGA29550.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|323248968|gb|EGA32891.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|323253065|gb|EGA36897.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|323255865|gb|EGA39610.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|323261411|gb|EGA44996.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|323266454|gb|EGA49942.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|323269716|gb|EGA53166.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
Length = 671
Score = 109 bits (274), Expect = 9e-23, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 27/60 (45%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L HH+ Y+ +D P D YDR+ L L+ Q P+L D P VG
Sbjct: 4 IEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVG 63
>gi|311278661|ref|YP_003940892.1| DNA ligase, NAD-dependent [Enterobacter cloacae SCF1]
gi|308747856|gb|ADO47608.1| DNA ligase, NAD-dependent [Enterobacter cloacae SCF1]
Length = 671
Score = 109 bits (274), Expect = 9e-23, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 27/60 (45%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L HH+ Y+ +D P D YDR+ L L+ + PEL D P VG
Sbjct: 4 IEQQLTALRATLRHHEYLYHVMDAPELPDAEYDRLMRELRELEAKHPELITPDSPTQRVG 63
>gi|281412160|ref|YP_003346239.1| DNA ligase, NAD-dependent [Thermotoga naphthophila RKU-10]
gi|281373263|gb|ADA66825.1| DNA ligase, NAD-dependent [Thermotoga naphthophila RKU-10]
Length = 688
Score = 109 bits (274), Expect = 9e-23, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 34/63 (53%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
E + EVE L + +H YY L++P+ TD YD++ RL L+ +PEL D P
Sbjct: 7 PKEVIEEVERLREEIEYHNYRYYVLNDPVITDEEYDKLMRRLIELERMYPELVTPDSPTQ 66
Query: 116 TVG 118
VG
Sbjct: 67 RVG 69
>gi|207857840|ref|YP_002244491.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|254781409|sp|B5R3V4|DNLJ_SALEP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|206709643|emb|CAR33993.1| DNA ligase [Salmonella enterica subsp. enterica serovar Enteritidis
str. P125109]
Length = 671
Score = 109 bits (274), Expect = 9e-23, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 27/60 (45%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L HH+ Y+ +D P D YDR+ L L+ Q P+L D P VG
Sbjct: 4 IEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVG 63
>gi|205353534|ref|YP_002227335.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|254781410|sp|B5RCP9|DNLJ_SALG2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|205273315|emb|CAR38285.1| DNA ligase [Salmonella enterica subsp. enterica serovar Gallinarum
str. 287/91]
gi|326628629|gb|EGE34972.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9]
Length = 671
Score = 109 bits (274), Expect = 9e-23, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 27/60 (45%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L HH+ Y+ +D P D YDR+ L L+ Q P+L D P VG
Sbjct: 4 IEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVG 63
>gi|168261543|ref|ZP_02683516.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|205349337|gb|EDZ35968.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
Length = 671
Score = 109 bits (274), Expect = 9e-23, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 27/60 (45%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L HH+ Y+ +D P D YDR+ L L+ Q P+L D P VG
Sbjct: 4 IEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVG 63
>gi|194444893|ref|YP_002041687.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|254781412|sp|B4SZU5|DNLJ_SALNS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|194403556|gb|ACF63778.1| DNA ligase [Salmonella enterica subsp. enterica serovar Newport
str. SL254]
Length = 671
Score = 109 bits (274), Expect = 9e-23, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 27/60 (45%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L HH+ Y+ +D P D YDR+ L L+ Q P+L D P VG
Sbjct: 4 IEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVG 63
>gi|168243193|ref|ZP_02668125.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|194449589|ref|YP_002046491.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|254781411|sp|B4TCF6|DNLJ_SALHS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|194407893|gb|ACF68112.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|205337689|gb|EDZ24453.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
Length = 671
Score = 109 bits (274), Expect = 9e-23, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 27/60 (45%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L HH+ Y+ +D P D YDR+ L L+ Q P+L D P VG
Sbjct: 4 IEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVG 63
>gi|204929538|ref|ZP_03220612.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|204321257|gb|EDZ06457.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
Length = 671
Score = 109 bits (274), Expect = 9e-23, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 27/60 (45%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L HH+ Y+ +D P D YDR+ L L+ Q P+L D P VG
Sbjct: 4 IEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVG 63
>gi|198243638|ref|YP_002216496.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|254781408|sp|B5FQB9|DNLJ_SALDC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|197938154|gb|ACH75487.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|326624250|gb|EGE30595.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Dublin str. 3246]
Length = 671
Score = 109 bits (274), Expect = 9e-23, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 27/60 (45%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L HH+ Y+ +D P D YDR+ L L+ Q P+L D P VG
Sbjct: 4 IEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVG 63
>gi|167549563|ref|ZP_02343322.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|205325268|gb|EDZ13107.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
Length = 671
Score = 109 bits (274), Expect = 9e-23, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 27/60 (45%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L HH+ Y+ +D P D YDR+ L L+ Q P+L D P VG
Sbjct: 4 IEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVG 63
>gi|16765747|ref|NP_461362.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|167991721|ref|ZP_02572820.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|197262860|ref|ZP_03162934.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|81522316|sp|Q8ZN89|DNLJ_SALTY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|16420966|gb|AAL21321.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhimurium
str. LT2]
gi|197241115|gb|EDY23735.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|205329843|gb|EDZ16607.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|261247627|emb|CBG25454.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhimurium
str. D23580]
gi|267994529|gb|ACY89414.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|301158979|emb|CBW18492.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhimurium
str. SL1344]
gi|312913414|dbj|BAJ37388.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|321222873|gb|EFX47944.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhimurium
str. TN061786]
gi|323130756|gb|ADX18186.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Typhimurium str. 4/74]
gi|332989355|gb|AEF08338.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
Length = 671
Score = 109 bits (274), Expect = 9e-23, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 27/60 (45%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L HH+ Y+ +D P D YDR+ L L+ Q P+L D P VG
Sbjct: 4 IEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVG 63
>gi|15889366|ref|NP_355047.1| NAD-dependent DNA ligase LigA [Agrobacterium tumefaciens str. C58]
gi|166215388|sp|A9CIB3|DNLJ_AGRT5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|15157212|gb|AAK87832.1| DNA ligase [Agrobacterium tumefaciens str. C58]
Length = 724
Score = 109 bits (274), Expect = 9e-23, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 34/73 (46%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
V +L++ EA E+ +L H Y+ D P +D YD + R DA++ FP
Sbjct: 4 DQIPVENLTELEASSELAFLAAELARHDALYHGKDAPEISDADYDALKRRNDAIEAAFPA 63
Query: 107 LFDEDHPWNTVGY 119
L D P VG+
Sbjct: 64 LVRADSPSKKVGF 76
>gi|332852097|ref|ZP_08433924.1| DNA ligase [Acinetobacter baumannii 6013150]
gi|332867495|ref|ZP_08437648.1| DNA ligase [Acinetobacter baumannii 6013113]
gi|332872654|ref|ZP_08440622.1| DNA ligase [Acinetobacter baumannii 6014059]
gi|332729469|gb|EGJ60808.1| DNA ligase [Acinetobacter baumannii 6013150]
gi|332733912|gb|EGJ65057.1| DNA ligase [Acinetobacter baumannii 6013113]
gi|332739183|gb|EGJ70042.1| DNA ligase [Acinetobacter baumannii 6014059]
Length = 683
Score = 109 bits (274), Expect = 9e-23, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 35/65 (53%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ + ++ L+++ H YY +D P +D YD + +L AL+EQ+PEL D P
Sbjct: 6 MAITSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQADSP 65
Query: 114 WNTVG 118
VG
Sbjct: 66 TTKVG 70
>gi|315634861|ref|ZP_07890143.1| NAD-dependent DNA ligase LigA [Aggregatibacter segnis ATCC 33393]
gi|315476413|gb|EFU67163.1| NAD-dependent DNA ligase LigA [Aggregatibacter segnis ATCC 33393]
Length = 671
Score = 109 bits (274), Expect = 9e-23, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 33/60 (55%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L K +H+ Y+ LD+P D YDR+ +L AL++Q PEL D P VG
Sbjct: 5 IQQQIDDLRKTLRYHEYQYHVLDDPQIPDSEYDRLFHQLKALEQQHPELITADSPTQRVG 64
>gi|224583040|ref|YP_002636838.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|254781413|sp|C0PZB4|DNLJ_SALPC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|224467567|gb|ACN45397.1| DNA ligase [Salmonella enterica subsp. enterica serovar Paratyphi C
strain RKS4594]
Length = 671
Score = 109 bits (274), Expect = 9e-23, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 27/60 (45%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L HH+ Y+ +D P D YDR+ L L+ Q P+L D P VG
Sbjct: 4 IEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVG 63
>gi|169797009|ref|YP_001714802.1| DNA ligase [Acinetobacter baumannii AYE]
gi|169149936|emb|CAM87830.1| DNA ligase [Acinetobacter baumannii AYE]
Length = 691
Score = 109 bits (274), Expect = 9e-23, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 35/65 (53%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ + ++ L+++ H YY +D P +D YD + +L AL+EQ+PEL D P
Sbjct: 14 MAITSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQADSP 73
Query: 114 WNTVG 118
VG
Sbjct: 74 TTKVG 78
>gi|168466836|ref|ZP_02700690.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|195630762|gb|EDX49354.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
Length = 671
Score = 109 bits (274), Expect = 9e-23, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 27/60 (45%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L HH+ Y+ +D P D YDR+ L L+ Q P+L D P VG
Sbjct: 4 IEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVG 63
>gi|56412686|ref|YP_149761.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|197361620|ref|YP_002141256.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|81362021|sp|Q5PNE2|DNLJ_SALPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254781414|sp|B5BB72|DNLJ_SALPK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|56126943|gb|AAV76449.1| DNA ligase [Salmonella enterica subsp. enterica serovar Paratyphi A
str. ATCC 9150]
gi|197093096|emb|CAR58535.1| DNA ligase [Salmonella enterica subsp. enterica serovar Paratyphi A
str. AKU_12601]
Length = 671
Score = 109 bits (274), Expect = 9e-23, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 27/60 (45%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L HH+ Y+ +D P D YDR+ L L+ Q P+L D P VG
Sbjct: 4 IEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVG 63
>gi|269127766|ref|YP_003301136.1| DNA ligase, NAD-dependent [Thermomonospora curvata DSM 43183]
gi|268312724|gb|ACY99098.1| DNA ligase, NAD-dependent [Thermomonospora curvata DSM 43183]
Length = 722
Score = 109 bits (274), Expect = 9e-23, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 28/64 (43%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
+ EA L + YY LD P +D YDR+ L L+E+ PEL D P
Sbjct: 7 TPTEAARRHAELSREIDEANYRYYVLDRPTLSDAEYDRLMRELRELEERHPELVTPDSPT 66
Query: 115 NTVG 118
VG
Sbjct: 67 QRVG 70
>gi|161612830|ref|YP_001586795.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Paratyphi B str. SPB7]
gi|190359282|sp|A9N362|DNLJ_SALPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|161362194|gb|ABX65962.1| hypothetical protein SPAB_00529 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
Length = 671
Score = 109 bits (274), Expect = 9e-23, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 27/60 (45%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L HH+ Y+ +D P D YDR+ L L+ Q P+L D P VG
Sbjct: 4 IEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVG 63
>gi|260555699|ref|ZP_05827919.1| DNA ligase, NAD-dependent [Acinetobacter baumannii ATCC 19606]
gi|260410610|gb|EEX03908.1| DNA ligase, NAD-dependent [Acinetobacter baumannii ATCC 19606]
Length = 691
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 35/65 (53%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ + ++ L+++ H YY +D P +D YD + +L AL+EQ+PEL D P
Sbjct: 14 MAITSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQADSP 73
Query: 114 WNTVG 118
VG
Sbjct: 74 TMKVG 78
>gi|239501241|ref|ZP_04660551.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB900]
Length = 678
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 35/65 (53%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ + ++ L+++ H YY +D P +D YD + +L AL+EQ+PEL D P
Sbjct: 1 MAITSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQADSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TTKVG 65
>gi|213156587|ref|YP_002318248.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB0057]
gi|215484469|ref|YP_002326704.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB307-0294]
gi|301347734|ref|ZP_07228475.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB056]
gi|301512482|ref|ZP_07237719.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB058]
gi|301594386|ref|ZP_07239394.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB059]
gi|221222446|sp|A3M2U3|DNLJ_ACIBT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254778154|sp|B7GZ71|DNLJ_ACIB3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254778155|sp|B7I790|DNLJ_ACIB5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254781253|sp|B0V8E4|DNLJ_ACIBY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|193076578|gb|ABO11237.2| DNA ligase [Acinetobacter baumannii ATCC 17978]
gi|213055747|gb|ACJ40649.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB0057]
gi|213986610|gb|ACJ56909.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB307-0294]
Length = 678
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 35/65 (53%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ + ++ L+++ H YY +D P +D YD + +L AL+EQ+PEL D P
Sbjct: 1 MAITSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQADSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TTKVG 65
>gi|148269959|ref|YP_001244419.1| DNA ligase, NAD-dependent [Thermotoga petrophila RKU-1]
gi|170288644|ref|YP_001738882.1| DNA ligase, NAD-dependent [Thermotoga sp. RQ2]
gi|190359298|sp|A5IKX0|DNLJ_THEP1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254781442|sp|B1LA51|DNLJ_THESQ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|147735503|gb|ABQ46843.1| DNA ligase, NAD-dependent [Thermotoga petrophila RKU-1]
gi|170176147|gb|ACB09199.1| DNA ligase, NAD-dependent [Thermotoga sp. RQ2]
Length = 688
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 34/63 (53%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
E + EVE L + +H YY L++P+ TD YD++ RL L+ +PEL D P
Sbjct: 7 PKEVIEEVERLREEIEYHNYRYYVLNDPVITDEEYDKLMRRLIELERMYPELVTPDSPTQ 66
Query: 116 TVG 118
VG
Sbjct: 67 RVG 69
>gi|62180995|ref|YP_217412.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|75481868|sp|Q57LT1|DNLJ_SALCH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|62128628|gb|AAX66331.1| DNA ligase [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|322715476|gb|EFZ07047.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Choleraesuis str. A50]
Length = 671
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 27/60 (45%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L HH+ Y+ +D P D YDR+ L L+ Q P+L D P VG
Sbjct: 4 IEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVG 63
>gi|197247622|ref|YP_002147380.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|254781407|sp|B5F0F5|DNLJ_SALA4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|197211325|gb|ACH48722.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
Length = 671
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 27/60 (45%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L HH+ Y+ +D P D YDR+ L L+ Q P+L D P VG
Sbjct: 4 IEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVG 63
>gi|168238909|ref|ZP_02663967.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|194734182|ref|YP_002115493.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|254781415|sp|B4TQF8|DNLJ_SALSV RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|194709684|gb|ACF88905.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|197288317|gb|EDY27698.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
Length = 671
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 27/60 (45%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L HH+ Y+ +D P D YDR+ L L+ Q P+L D P VG
Sbjct: 4 IEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVG 63
>gi|168231967|ref|ZP_02657025.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|194471791|ref|ZP_03077775.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194458155|gb|EDX46994.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|205333574|gb|EDZ20338.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
Length = 671
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 27/60 (45%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L HH+ Y+ +D P D YDR+ L L+ Q P+L D P VG
Sbjct: 4 IEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVG 63
>gi|200388789|ref|ZP_03215401.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|199605887|gb|EDZ04432.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
Length = 671
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 27/60 (45%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L HH+ Y+ +D P D YDR+ L L+ Q P+L D P VG
Sbjct: 4 IEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVG 63
>gi|27262356|gb|AAN87459.1| NAD-dependent DNA ligase [Heliobacillus mobilis]
Length = 677
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 37/64 (57%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
++ EA + V+ L +I HH+ YY LD P TD YD + L A+++ +PEL + D P
Sbjct: 13 NRVEAEVRVKELREIIRHHEYRYYVLDAPEITDADYDALMRELQAIEDTYPELVEADSPT 72
Query: 115 NTVG 118
VG
Sbjct: 73 RRVG 76
>gi|315121970|ref|YP_004062459.1| DNA ligase, NAD-dependent [Candidatus Liberibacter solanacearum
CLso-ZC1]
gi|315122938|ref|YP_004063427.1| DNA ligase, NAD-dependent [Candidatus Liberibacter solanacearum
CLso-ZC1]
gi|313495372|gb|ADR51971.1| DNA ligase, NAD-dependent [Candidatus Liberibacter solanacearum
CLso-ZC1]
gi|313496340|gb|ADR52939.1| DNA ligase, NAD-dependent [Candidatus Liberibacter solanacearum
CLso-ZC1]
Length = 127
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 49/99 (49%), Positives = 60/99 (60%), Gaps = 2/99 (2%)
Query: 23 QWKKLLTLEAKFLPNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRL-D 81
Q K LL EAKFLP R L ++ K V+ LS EA+IE EYL KI LHH++WYYRL D
Sbjct: 29 QLKSLLKFEAKFLPTPRQLLKIINDFKPVSQLSFWEALIETEYLTKIVLHHRRWYYRLSD 88
Query: 82 NPLFTDGLYDRVSERLDALQEQFPELFDEDHP-WNTVGY 119
D YD++ R+ L E FPEL+ HP + VGY
Sbjct: 89 ETPLLDADYDKIEIRIIKLAEHFPELYSLAHPIISEVGY 127
>gi|152971289|ref|YP_001336398.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|166215815|sp|A6TC47|DNLJ_KLEP7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|150956138|gb|ABR78168.1| DNA ligase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
Length = 671
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 28/60 (46%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L HH+ Y+ +D P D YDR+ +L L+ Q PEL D P VG
Sbjct: 4 IEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRKLRELESQHPELITPDSPTQRVG 63
>gi|291544905|emb|CBL18014.1| DNA ligase, NAD-dependent [Ruminococcus sp. 18P13]
Length = 660
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 29/65 (44%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ +A + + L K H YY LD P D YD + L A++ ++P+L P
Sbjct: 1 MDFEQAKLRLAQLTKEIEQHNYAYYVLDAPTIEDCDYDALMRELKAIETEYPQLLSPHSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SQRVG 65
>gi|238912842|ref|ZP_04656679.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Tennessee str. CDC07-0191]
Length = 671
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 27/60 (45%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L HH+ Y+ +D P D YDR+ L L+ Q P+L D P VG
Sbjct: 4 IEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVG 63
>gi|168817829|ref|ZP_02829829.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|205345161|gb|EDZ31925.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|320086917|emb|CBY96687.1| DNA ligase [Salmonella enterica subsp. enterica serovar Weltevreden
str. 2007-60-3289-1]
Length = 671
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 27/60 (45%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L HH+ Y+ +D P D YDR+ L L+ Q P+L D P VG
Sbjct: 4 IEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVG 63
>gi|262042032|ref|ZP_06015211.1| DNA ligase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
13884]
gi|259040623|gb|EEW41715.1| DNA ligase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
13884]
Length = 671
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 28/60 (46%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L HH+ Y+ +D P D YDR+ +L L+ Q PEL D P VG
Sbjct: 4 IEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRKLRELESQHPELITPDSPTQRVG 63
>gi|147669216|ref|YP_001214034.1| DNA ligase, NAD-dependent [Dehalococcoides sp. BAV1]
gi|190359250|sp|A5FRL4|DNLJ_DEHSB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|146270164|gb|ABQ17156.1| DNA ligase, NAD-dependent [Dehalococcoides sp. BAV1]
Length = 680
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 30/58 (51%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
IEVE L + H + YY DNP +D YD + RL L+E PEL D P VG
Sbjct: 9 IEVENLRREINRHNQLYYVQDNPEISDAQYDTLIRRLKELEEAHPELVTPDSPTQRVG 66
>gi|238895883|ref|YP_002920619.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae NTUH-K2044]
gi|238548201|dbj|BAH64552.1| DNA ligase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
Length = 671
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 28/60 (46%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L HH+ Y+ +D P D YDR+ +L L+ Q PEL D P VG
Sbjct: 4 IEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRKLRELESQHPELITPDSPTQRVG 63
>gi|57234606|ref|YP_181338.1| DNA ligase, NAD-dependent [Dehalococcoides ethenogenes 195]
gi|123759715|sp|Q3Z8W1|DNLJ_DEHE1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|57225054|gb|AAW40111.1| DNA ligase, NAD-dependent [Dehalococcoides ethenogenes 195]
Length = 677
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 29/59 (49%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E+E L + H + YY DNP +D YD + RL L+E PEL D P VG
Sbjct: 5 RTEIENLRREINRHNQLYYVQDNPEISDSEYDALLRRLKELEEAHPELVTADSPTQRVG 63
>gi|284047985|ref|YP_003398324.1| DNA ligase, NAD-dependent [Acidaminococcus fermentans DSM 20731]
gi|283952206|gb|ADB47009.1| DNA ligase, NAD-dependent [Acidaminococcus fermentans DSM 20731]
Length = 675
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 35/68 (51%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
++ ++K A ++ L + + YY DNPL TD YD + L AL+ ++PEL
Sbjct: 1 MSEMTKEAAAARIDQLRAVMKKNSYLYYVQDNPLITDAEYDAMMRELKALEAEYPELVTP 60
Query: 111 DHPWNTVG 118
D P VG
Sbjct: 61 DSPSQHVG 68
>gi|330013648|ref|ZP_08307732.1| DNA ligase [Klebsiella sp. MS 92-3]
gi|328533421|gb|EGF60158.1| DNA ligase [Klebsiella sp. MS 92-3]
Length = 671
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 28/60 (46%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L HH+ Y+ +D P D YDR+ +L L+ Q PEL D P VG
Sbjct: 4 IEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRKLRELESQHPELITPDSPTQRVG 63
>gi|332162521|ref|YP_004299098.1| NAD-dependent DNA ligase LigA [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|318606605|emb|CBY28103.1| DNA ligase [Yersinia enterocolitica subsp. palearctica Y11]
gi|325666751|gb|ADZ43395.1| NAD-dependent DNA ligase LigA [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330860741|emb|CBX71032.1| DNA ligase [Yersinia enterocolitica W22703]
Length = 672
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 30/62 (48%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ ++ L HH+ Y+ LD P D YDR+ ++L L+ Q PEL D P
Sbjct: 2 ESIIQQINQLRTSLRHHEHLYHVLDAPEIPDAEYDRLMQQLRELEAQHPELITNDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|74316642|ref|YP_314382.1| NAD-dependent DNA ligase [Thiobacillus denitrificans ATCC 25259]
gi|123745545|sp|Q3SL40|DNLJ_THIDA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|74056137|gb|AAZ96577.1| NAD-dependent DNA ligase [Thiobacillus denitrificans ATCC 25259]
Length = 686
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 28/65 (43%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ + L + H YY LD P D YDR+ L+AL+ PEL D P
Sbjct: 1 MADRDVQARAAALRREIERHNYAYYVLDAPTIPDAEYDRLYHELEALEAAHPELVAADSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TRRVG 65
>gi|15606063|ref|NP_213440.1| DNA ligase (NAD dependent) [Aquifex aeolicus VF5]
gi|7673992|sp|O66880|DNLJ_AQUAE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|2983242|gb|AAC06838.1| DNA ligase (NAD dependent) [Aquifex aeolicus VF5]
Length = 720
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 31 EAKFLPNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLY 90
E + R L K K V LS EA E L ++ +H YY NP+ D Y
Sbjct: 7 EKELQEKTRELLR---KIKDVKVLSFEEAKKLAEDLREVIRYHDYKYYVEANPVIPDYDY 63
Query: 91 DRVSERLDALQEQFPELFDEDHPWNTV 117
DR+ L +++++PEL D P V
Sbjct: 64 DRLFRALKEIEKKYPELITPDSPTQRV 90
>gi|123441550|ref|YP_001005536.1| NAD-dependent DNA ligase LigA [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|166216254|sp|A1JLA4|DNLJ_YERE8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|122088511|emb|CAL11304.1| DNA ligase [Yersinia enterocolitica subsp. enterocolitica 8081]
Length = 672
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 30/62 (48%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ ++ L HH+ Y+ LD P D YDR+ ++L L+ Q PEL D P
Sbjct: 2 ESIIQQINQLRTSLRHHEHLYHVLDAPEIPDAEYDRLMQQLRELEAQHPELITNDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|300897228|ref|ZP_07115672.1| DNA ligase, NAD-dependent [Escherichia coli MS 198-1]
gi|300358986|gb|EFJ74856.1| DNA ligase, NAD-dependent [Escherichia coli MS 198-1]
Length = 671
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ L HH+ Y+ +D P D YDR+ L L+ + PEL D P
Sbjct: 2 ESIEQQLTELRTTLRHHEYLYHVMDAPEIPDVEYDRLMRELRELETKHPELITPDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|238759468|ref|ZP_04620632.1| DNA ligase [Yersinia aldovae ATCC 35236]
gi|238702365|gb|EEP94918.1| DNA ligase [Yersinia aldovae ATCC 35236]
Length = 670
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 30/62 (48%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ ++ L HH+ Y+ LD P D YDR+ ++L L+ Q PEL D P
Sbjct: 2 ESIIQQINQLRTSLRHHEHLYHVLDAPEIPDAEYDRLMQQLRELEAQHPELVTNDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|331663971|ref|ZP_08364881.1| DNA ligase, NAD-dependent [Escherichia coli TA143]
gi|331059770|gb|EGI31747.1| DNA ligase, NAD-dependent [Escherichia coli TA143]
Length = 671
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ L HH+ Y+ +D P D YDR+ L L+ + PEL D P
Sbjct: 2 ESIEQQLTELRTTLRHHEYLYHVMDAPEIPDVEYDRLMRELRELETKHPELITPDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|218705919|ref|YP_002413438.1| NAD-dependent DNA ligase LigA [Escherichia coli UMN026]
gi|293405854|ref|ZP_06649846.1| DNA ligase [Escherichia coli FVEC1412]
gi|298381604|ref|ZP_06991203.1| DNA ligase [Escherichia coli FVEC1302]
gi|254781326|sp|B7N602|DNLJ_ECOLU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|218433016|emb|CAR13911.1| DNA ligase, NAD(+)-dependent [Escherichia coli UMN026]
gi|284922366|emb|CBG35453.1| DNA ligase [Escherichia coli 042]
gi|291428062|gb|EFF01089.1| DNA ligase [Escherichia coli FVEC1412]
gi|298279046|gb|EFI20560.1| DNA ligase [Escherichia coli FVEC1302]
Length = 671
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ L HH+ Y+ +D P D YDR+ L L+ + PEL D P
Sbjct: 2 ESIEQQLTELRTTLRHHEYLYHVMDAPEIPDVEYDRLMRELRELETKHPELITPDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|116626792|ref|YP_828948.1| DNA ligase, NAD-dependent [Candidatus Solibacter usitatus
Ellin6076]
gi|122251346|sp|Q01NV7|DNLJ_SOLUE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|116229954|gb|ABJ88663.1| DNA ligase, NAD-dependent [Candidatus Solibacter usitatus
Ellin6076]
Length = 662
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 31/59 (52%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+E+E L + HH+ YY LD P TD YD + RL L+ + P+L D P VG
Sbjct: 5 AVEIEKLREQLHHHEHLYYVLDKPEITDAEYDALMHRLQELETKHPDLLTPDSPTQRVG 63
>gi|322652148|gb|EFY48510.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
Length = 571
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 27/60 (45%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L HH+ Y+ +D P D YDR+ L L+ Q P+L D P VG
Sbjct: 4 IEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVG 63
>gi|261884935|ref|ZP_06008974.1| NAD-dependent DNA ligase LigA [Campylobacter fetus subsp.
venerealis str. Azul-94]
Length = 195
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 36/68 (52%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V L++ EA E+E L + HH + Y+ D P +D YD + R +A++ FP L +
Sbjct: 6 VEKLTELEAAAELERLARAIAHHDELYHAKDRPEISDAAYDALKRRNEAIEAHFPALVRD 65
Query: 111 DHPWNTVG 118
D P VG
Sbjct: 66 DSPSRRVG 73
>gi|116748867|ref|YP_845554.1| DNA ligase, NAD-dependent [Syntrophobacter fumaroxidans MPOB]
gi|116697931|gb|ABK17119.1| DNA ligase, NAD-dependent [Syntrophobacter fumaroxidans MPOB]
Length = 694
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 30/64 (46%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
+ +A +E L + HH YY LD P +D YD + L L+E +P L D P
Sbjct: 22 DREKAHARIEALREEIRHHNYLYYVLDRPEISDEAYDGLFRELVRLEESYPALITPDSPT 81
Query: 115 NTVG 118
VG
Sbjct: 82 QRVG 85
>gi|166216279|sp|A0LI67|DNLJ_SYNFM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
Length = 675
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 30/64 (46%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
+ +A +E L + HH YY LD P +D YD + L L+E +P L D P
Sbjct: 3 DREKAHARIEALREEIRHHNYLYYVLDRPEISDEAYDGLFRELVRLEESYPALITPDSPT 62
Query: 115 NTVG 118
VG
Sbjct: 63 QRVG 66
>gi|49474446|ref|YP_032488.1| NAD-dependent DNA ligase LigA [Bartonella quintana str. Toulouse]
gi|81646941|sp|Q6FZ81|DNLJ_BARQU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|49239950|emb|CAF26355.1| DNA ligase [Bartonella quintana str. Toulouse]
Length = 719
Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 35/69 (50%)
Query: 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
++ +L+ EA E+E+L K H Y R D P +D YD + R ++ FPEL
Sbjct: 5 EIKNLTALEAESELEWLAKEIARHDVLYNRDDQPEISDAEYDALRRRNAEIEALFPELIR 64
Query: 110 EDHPWNTVG 118
D P + +G
Sbjct: 65 SDSPSHKIG 73
>gi|126462048|ref|YP_001043162.1| DNA ligase, NAD-dependent [Rhodobacter sphaeroides ATCC 17029]
gi|166216229|sp|A3PJ74|DNLJ_RHOS1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|126103712|gb|ABN76390.1| DNA ligase, NAD-dependent [Rhodobacter sphaeroides ATCC 17029]
Length = 704
Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 36/74 (48%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
+ + V L++ EA E+ L + Y+ D P +D YD + R A++EQF
Sbjct: 1 MQDERPVDQLTEAEAATELARLAEAIEAANTAYHTHDAPQISDADYDALKLRNRAIEEQF 60
Query: 105 PELFDEDHPWNTVG 118
PEL D P + VG
Sbjct: 61 PELRRSDSPSDRVG 74
>gi|49475845|ref|YP_033886.1| NAD-dependent DNA ligase LigA [Bartonella henselae str. Houston-1]
gi|81647763|sp|Q6G2R5|DNLJ_BARHE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|49238653|emb|CAF27899.1| DNA ligase [Bartonella henselae str. Houston-1]
Length = 716
Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 35/69 (50%)
Query: 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
++ +L+ EA E+E+L K H Y R D P +D YD + R ++ FPEL
Sbjct: 5 EIQNLTALEAASELEWLAKEITRHDVLYNRNDQPEISDAEYDALRRRNAEIEALFPELIR 64
Query: 110 EDHPWNTVG 118
D P + +G
Sbjct: 65 PDSPSHKIG 73
>gi|309792382|ref|ZP_07686850.1| DNA ligase, NAD-dependent [Oscillochloris trichoides DG6]
gi|308225603|gb|EFO79363.1| DNA ligase, NAD-dependent [Oscillochloris trichoides DG6]
Length = 674
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+++ E + +E L + H YY LD+P +D YD + L L+ PEL D P
Sbjct: 1 MAESELVQRIERLRALLREHNYRYYVLDDPNVSDAEYDALMRELRHLEATHPELCSPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|320354711|ref|YP_004196050.1| NAD-dependent DNA ligase [Desulfobulbus propionicus DSM 2032]
gi|320123213|gb|ADW18759.1| DNA ligase, NAD-dependent [Desulfobulbus propionicus DSM 2032]
Length = 670
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 36/65 (55%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ KG A +E L H YY LD+P+ +DG YD + L AL++++PEL D P
Sbjct: 1 MDKGRAADRLEELRGQLRFHAHRYYVLDDPIISDGEYDALFRELLALEQEYPELVTADSP 60
Query: 114 WNTVG 118
+ VG
Sbjct: 61 SHRVG 65
>gi|78223924|ref|YP_385671.1| NAD-dependent DNA ligase C4-type [Geobacter metallireducens GS-15]
gi|123756373|sp|Q39S28|DNLJ_GEOMG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|78195179|gb|ABB32946.1| NAD-dependent DNA ligase C4-type [Geobacter metallireducens GS-15]
Length = 671
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 28/65 (43%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + A + L H YY LD P TD YD + L L+E+ PEL D P
Sbjct: 1 MDRNAAERRIAELRAEIRRHDHLYYVLDRPELTDAEYDALYRELLKLEEEHPELVTPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SRRVG 65
>gi|70729275|ref|YP_259012.1| NAD-dependent DNA ligase LigA [Pseudomonas fluorescens Pf-5]
gi|123734866|sp|Q4KFH1|DNLJ_PSEF5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|68343574|gb|AAY91180.1| DNA ligase, NAD-dependent [Pseudomonas fluorescens Pf-5]
Length = 788
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 26/60 (43%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
A + L H Y+ LD P D YDR+ L AL+ + PEL D P VG
Sbjct: 4 AETRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFRELKALEAEHPELVTSDSPTQRVG 63
>gi|73748436|ref|YP_307675.1| DNA ligase, NAD-dependent [Dehalococcoides sp. CBDB1]
gi|123759761|sp|Q3ZX08|DNLJ_DEHSC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|73660152|emb|CAI82759.1| DNA ligase, NAD-dependent [Dehalococcoides sp. CBDB1]
Length = 677
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 30/58 (51%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
IEVE L + H + YY DNP +D YD + RL L+E PEL D P VG
Sbjct: 6 IEVENLRREINRHNQLYYVQDNPEISDAQYDTLIRRLKELEEAHPELVTPDSPTQKVG 63
>gi|260550982|ref|ZP_05825187.1| DNA ligase [Acinetobacter sp. RUH2624]
gi|260405930|gb|EEW99417.1| DNA ligase [Acinetobacter sp. RUH2624]
Length = 691
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 35/65 (53%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ + ++ L+++ H YY +D P +D YD + +L AL+EQ+PEL D P
Sbjct: 14 MAITSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQTDSP 73
Query: 114 WNTVG 118
VG
Sbjct: 74 TTKVG 78
>gi|184157078|ref|YP_001845417.1| NAD-dependent DNA ligase [Acinetobacter baumannii ACICU]
gi|254778156|sp|B2HUJ5|DNLJ_ACIBC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|183208672|gb|ACC56070.1| NAD-dependent DNA ligase [Acinetobacter baumannii ACICU]
Length = 673
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 33/59 (55%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ ++ L+++ H YY +D P +D YD + +L AL+EQ+PEL D P VG
Sbjct: 2 IEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQADSPTTKVG 60
>gi|197285679|ref|YP_002151551.1| NAD-dependent DNA ligase LigA [Proteus mirabilis HI4320]
gi|254781393|sp|B4EZR2|DNLJ_PROMH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|194683166|emb|CAR43788.1| DNA ligase [Proteus mirabilis HI4320]
Length = 675
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L HH+ Y+ +D P D YDR+ +L AL+ + PEL D P VG
Sbjct: 5 IQQQIDELRVTLRHHEYLYHVMDAPEIPDAEYDRLMNKLKALEAEHPELITPDSPTQRVG 64
>gi|113460523|ref|YP_718587.1| NAD-dependent DNA ligase LigA [Haemophilus somnus 129PT]
gi|122945214|sp|Q0I2H6|DNLJ_HAES1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|112822566|gb|ABI24655.1| DNA ligase (NAD+) [Haemophilus somnus 129PT]
Length = 673
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 35/60 (58%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++E L ++ HH+ Y+ LDNP D YDR+ +L AL++Q+PE E+ P VG
Sbjct: 8 IKQQIEELRQLLRHHEYQYHVLDNPQIPDSEYDRLFHQLKALEQQYPEYASENSPTQRVG 67
>gi|332755050|gb|EGJ85415.1| DNA ligase domain protein [Shigella flexneri 4343-70]
Length = 256
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ L HH+ Y+ +D P D YDR+ L L+ + PEL D P
Sbjct: 2 ESIEQQLTELRTTLCHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|227356188|ref|ZP_03840577.1| DNA ligase [Proteus mirabilis ATCC 29906]
gi|227163652|gb|EEI48568.1| DNA ligase [Proteus mirabilis ATCC 29906]
Length = 675
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L HH+ Y+ +D P D YDR+ +L AL+ + PEL D P VG
Sbjct: 5 IQQQIDELRVTLRHHEYLYHVMDAPEIPDAEYDRLMNKLKALEAEHPELITPDSPTQRVG 64
>gi|113868039|ref|YP_726528.1| NAD-dependent DNA ligase [Ralstonia eutropha H16]
gi|123133949|sp|Q0KA11|DNLJ_RALEH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|113526815|emb|CAJ93160.1| NAD-dependent DNA ligase [Ralstonia eutropha H16]
Length = 709
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 29/73 (39%)
Query: 46 DKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFP 105
D + L A V +L H YY LD P D YD + L AL+ + P
Sbjct: 11 DASAPAGPLPPEAAAKRVAWLRDELDRHNYQYYVLDAPTIPDAEYDALFSELQALELEHP 70
Query: 106 ELFDEDHPWNTVG 118
EL D P VG
Sbjct: 71 ELQTPDSPTQRVG 83
>gi|115379272|ref|ZP_01466385.1| DNA ligase [Stigmatella aurantiaca DW4/3-1]
gi|115363713|gb|EAU62835.1| DNA ligase [Stigmatella aurantiaca DW4/3-1]
Length = 443
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 28/60 (46%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
A L + HH YY LD+P +D YDR+ L L+ QFP L D P VG
Sbjct: 48 AETRARDLRRELAHHNHRYYVLDSPEVSDAEYDRLMRELQGLEAQFPALATPDSPTQRVG 107
>gi|118590881|ref|ZP_01548281.1| NAD-dependent DNA ligase LigA [Stappia aggregata IAM 12614]
gi|118436403|gb|EAV43044.1| NAD-dependent DNA ligase LigA [Stappia aggregata IAM 12614]
Length = 750
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 38/71 (53%)
Query: 48 AKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
+ +L++ EA +E++ L H + Y++ D P+ +D YD + R +++ +FP L
Sbjct: 41 QTDIDALTQEEAQVELKRLAAEIAEHDRRYHQEDAPVISDADYDALRRRNASIEARFPNL 100
Query: 108 FDEDHPWNTVG 118
+D P VG
Sbjct: 101 ILDDGPSAQVG 111
>gi|317491275|ref|ZP_07949711.1| DNA ligase [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316920822|gb|EFV42145.1| DNA ligase [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 678
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 26/52 (50%)
Query: 67 VKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ LD P D YDR+ L AL+EQ PEL D P VG
Sbjct: 17 RTALRHHEYQYHVLDAPEIPDAEYDRLMRELRALEEQHPELITPDSPTQRVG 68
>gi|170718864|ref|YP_001784038.1| NAD-dependent DNA ligase LigA [Haemophilus somnus 2336]
gi|254781341|sp|B0USD9|DNLJ_HAES2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|168826993|gb|ACA32364.1| DNA ligase, NAD-dependent [Haemophilus somnus 2336]
Length = 667
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 35/60 (58%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++E L ++ HH+ Y+ LDNP D YDR+ +L AL++Q+PE E+ P VG
Sbjct: 2 IKQQIEELRQLLRHHEYQYHVLDNPQIPDSEYDRLFHQLKALEQQYPEYASENSPTQRVG 61
>gi|322831833|ref|YP_004211860.1| DNA ligase, NAD-dependent [Rahnella sp. Y9602]
gi|321167034|gb|ADW72733.1| DNA ligase, NAD-dependent [Rahnella sp. Y9602]
Length = 673
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 26/62 (41%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ L HH+ Y+ LD P D YDR+ L L+ PEL D P
Sbjct: 2 ATIEEQISQLRTQLRHHEYQYHVLDAPEVPDAEYDRLMRELRELETAHPELVTADSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|270307958|ref|YP_003330016.1| DNA ligase, NAD-dependent [Dehalococcoides sp. VS]
gi|270153850|gb|ACZ61688.1| DNA ligase, NAD-dependent [Dehalococcoides sp. VS]
Length = 680
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 29/59 (49%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E+E L + H + YY DNP +D YD + RL L+E PEL + P VG
Sbjct: 8 QTEIENLRREINRHNQLYYVQDNPEISDSEYDALLRRLKELEEAHPELVTPNSPTQRVG 66
>gi|260887264|ref|ZP_05898527.1| DNA ligase, NAD-dependent [Selenomonas sputigena ATCC 35185]
gi|330838979|ref|YP_004413559.1| DNA ligase, NAD-dependent [Selenomonas sputigena ATCC 35185]
gi|260863326|gb|EEX77826.1| DNA ligase, NAD-dependent [Selenomonas sputigena ATCC 35185]
gi|329746743|gb|AEC00100.1| DNA ligase, NAD-dependent [Selenomonas sputigena ATCC 35185]
Length = 669
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 34/65 (52%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ E E+ L + HH YY DNP +D YD++ +L AL+ ++PEL E+ P
Sbjct: 1 MDIQEVKKELAQLRRTIRHHNVRYYNDDNPEISDYEYDQLMLQLKALEREYPELITENSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQKVG 65
>gi|90021526|ref|YP_527353.1| DNA ligase (NAD+) [Saccharophagus degradans 2-40]
gi|123090491|sp|Q21JI8|DNLJ_SACD2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|89951126|gb|ABD81141.1| DNA ligase, NAD-dependent [Saccharophagus degradans 2-40]
Length = 674
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 34/62 (54%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ ++E L +H K YY LD P D YD++ + L A+++QFPEL ED P
Sbjct: 5 DAVLDKLESLKNQINYHNKLYYVLDAPELPDAEYDKLFQELQAIEQQFPELVTEDSPTQR 64
Query: 117 VG 118
VG
Sbjct: 65 VG 66
>gi|238792031|ref|ZP_04635667.1| DNA ligase [Yersinia intermedia ATCC 29909]
gi|238728662|gb|EEQ20180.1| DNA ligase [Yersinia intermedia ATCC 29909]
Length = 670
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ ++ L HH+ Y+ LD P D YDR+ ++L +L+ Q PEL D P
Sbjct: 2 ESIIQQINQLRTSLRHHEHLYHVLDAPEIPDAEYDRLMQQLRSLEAQHPELITHDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|293395040|ref|ZP_06639327.1| DNA ligase [Serratia odorifera DSM 4582]
gi|291422447|gb|EFE95689.1| DNA ligase [Serratia odorifera DSM 4582]
Length = 673
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 27/58 (46%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L HH+ Y+ LD P D YDR+ L L+E PEL D P VG
Sbjct: 6 KKINQLRTSLRHHEYLYHVLDAPEIPDAEYDRLMRELRTLEEAHPELITADSPTQRVG 63
>gi|169634132|ref|YP_001707868.1| DNA ligase [Acinetobacter baumannii SDF]
gi|169152924|emb|CAP01965.1| DNA ligase [Acinetobacter baumannii]
Length = 691
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 34/65 (52%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ + ++ L+++ H YY +D P +D YD + +L AL+EQ+PE D P
Sbjct: 14 MAITSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPEFVQADSP 73
Query: 114 WNTVG 118
VG
Sbjct: 74 TTKVG 78
>gi|327394702|dbj|BAK12124.1| DNA ligase LigA [Pantoea ananatis AJ13355]
Length = 672
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 27/56 (48%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L HH+ Y+ +D P D YDR+ L L+EQ P+L D P VG
Sbjct: 8 ITELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEEQHPDLITPDSPTQRVG 63
>gi|291618312|ref|YP_003521054.1| LigA [Pantoea ananatis LMG 20103]
gi|291153342|gb|ADD77926.1| LigA [Pantoea ananatis LMG 20103]
Length = 672
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 27/56 (48%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L HH+ Y+ +D P D YDR+ L L+EQ P+L D P VG
Sbjct: 8 ITELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEEQHPDLITPDSPTQRVG 63
>gi|238756322|ref|ZP_04617636.1| DNA ligase [Yersinia ruckeri ATCC 29473]
gi|238705475|gb|EEP97878.1| DNA ligase [Yersinia ruckeri ATCC 29473]
Length = 674
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 28/62 (45%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ ++ L HH+ Y+ LD P D YDR+ L L+ Q PEL D P
Sbjct: 2 ESIIQQINQLRASLRHHEHQYHVLDAPEIPDAEYDRLMGELRELEAQHPELITADSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|294677201|ref|YP_003577816.1| DNA ligase [Rhodobacter capsulatus SB 1003]
gi|294476021|gb|ADE85409.1| DNA ligase (NAD(+)) [Rhodobacter capsulatus SB 1003]
Length = 707
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 35/72 (48%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
+ SL++ EA EV LV Y+ LD P +D YD + RL A++ +FP+
Sbjct: 6 PFSDLDSLTRAEAEAEVPELVARIEAANHAYHTLDAPKISDADYDALKRRLAAIEARFPD 65
Query: 107 LFDEDHPWNTVG 118
L D P VG
Sbjct: 66 LARADSPTMRVG 77
>gi|238799224|ref|ZP_04642672.1| DNA ligase [Yersinia mollaretii ATCC 43969]
gi|238716921|gb|EEQ08789.1| DNA ligase [Yersinia mollaretii ATCC 43969]
Length = 670
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 30/62 (48%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ ++ L HH+ Y+ LD P D YDR+ ++L L+ Q PEL D P
Sbjct: 2 ESIIQQINQLRTSLRHHEHQYHVLDAPEIPDAEYDRLMQQLRDLEAQHPELITSDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|288941063|ref|YP_003443303.1| DNA ligase, NAD-dependent [Allochromatium vinosum DSM 180]
gi|288896435|gb|ADC62271.1| DNA ligase, NAD-dependent [Allochromatium vinosum DSM 180]
Length = 696
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 28/65 (43%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ +E L +H YY LD+P D YDR+ L L+ + P L D P
Sbjct: 1 MTSSAITQRIEALRAEIRYHNHRYYVLDDPEIPDAEYDRLFAELQQLEAEHPALITPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|238790828|ref|ZP_04634584.1| DNA ligase [Yersinia frederiksenii ATCC 33641]
gi|238721075|gb|EEQ12759.1| DNA ligase [Yersinia frederiksenii ATCC 33641]
Length = 670
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 30/62 (48%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ ++ L HH+ Y+ LD P D YDR+ ++L L+ Q PEL D P
Sbjct: 2 ESIIQQINQLRTSLRHHEHQYHVLDAPEIPDAEYDRLMQQLRDLEAQHPELITNDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|332970057|gb|EGK09055.1| NAD-dependent DNA ligase LigA [Desmospora sp. 8437]
Length = 670
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 32/65 (49%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + EA +E L + H Y+ L+ P+ +D YD + L L+++ PEL D P
Sbjct: 1 MERKEAEQRIEALRREIHEHDHRYHVLNQPVISDQEYDAMMRELLGLEQEHPELVTPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SQRVG 65
>gi|254781232|sp|B0VU02|DNLJ_ACIBS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
Length = 678
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 34/65 (52%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ + ++ L+++ H YY +D P +D YD + +L AL+EQ+PE D P
Sbjct: 1 MAITSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPEFVQADSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TTKVG 65
>gi|238765534|ref|ZP_04626449.1| DNA ligase [Yersinia kristensenii ATCC 33638]
gi|238696249|gb|EEP89051.1| DNA ligase [Yersinia kristensenii ATCC 33638]
Length = 670
Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 30/62 (48%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ ++ L HH+ Y+ LD P D YDR+ ++L L+ Q PEL D P
Sbjct: 2 ESIIQQINQLRTSLRHHEHQYHVLDAPEIPDAEYDRLMQQLRDLEAQHPELITNDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|217979603|ref|YP_002363750.1| DNA ligase, NAD-dependent [Methylocella silvestris BL2]
gi|254781370|sp|B8ETN6|DNLJ_METSB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|217504979|gb|ACK52388.1| DNA ligase, NAD-dependent [Methylocella silvestris BL2]
Length = 700
Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 32/72 (44%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
AK + +++ +A E L H YYR D P +D YDR+ R L+ FPE
Sbjct: 2 SAKPIDAMTLAQARREHSRLGAEIAAHDARYYREDAPTVSDAEYDRLRRRYGELESAFPE 61
Query: 107 LFDEDHPWNTVG 118
L D VG
Sbjct: 62 LASPDSLTKKVG 73
>gi|117927902|ref|YP_872453.1| DNA ligase, NAD-dependent [Acidothermus cellulolyticus 11B]
gi|166215382|sp|A0LSQ7|DNLJ_ACIC1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|117648365|gb|ABK52467.1| DNA ligase, NAD-dependent [Acidothermus cellulolyticus 11B]
Length = 695
Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 28/63 (44%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S +A LVK H YY LD P +D YD + L+ ++ +PEL D P
Sbjct: 12 SAADAARRHAELVKEIEEHAYRYYVLDAPTISDAEYDALMRELEEIENAYPELRTPDSPT 71
Query: 115 NTV 117
V
Sbjct: 72 QKV 74
>gi|167631047|ref|YP_001681546.1| DNA ligase, nad-dependent [Heliobacterium modesticaldum Ice1]
gi|254781344|sp|B0TDL0|DNLJ_HELMI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|167593787|gb|ABZ85535.1| DNA ligase, nad-dependent [Heliobacterium modesticaldum Ice1]
Length = 675
Score = 108 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 28/63 (44%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
+A + L + H YY LD P +D YDR+ L L++ PEL D P
Sbjct: 10 PADAAQRIAELREQIRRHDYCYYVLDAPEISDAEYDRLMRELLDLEQSHPELVTADSPSQ 69
Query: 116 TVG 118
VG
Sbjct: 70 RVG 72
>gi|167038089|ref|YP_001665667.1| NAD-dependent DNA ligase [Thermoanaerobacter pseudethanolicus ATCC
33223]
gi|320116496|ref|YP_004186655.1| NAD-dependent DNA ligase [Thermoanaerobacter brockii subsp. finnii
Ako-1]
gi|254781439|sp|B0KBN6|DNLJ_THEP3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|166856923|gb|ABY95331.1| DNA ligase, NAD-dependent [Thermoanaerobacter pseudethanolicus ATCC
33223]
gi|319929587|gb|ADV80272.1| DNA ligase, NAD-dependent [Thermoanaerobacter brockii subsp. finnii
Ako-1]
Length = 662
Score = 108 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L + +H YY LD P +D YD + L L+E++PEL D P VG
Sbjct: 4 KERIKELREKINYHNYRYYVLDQPEISDYEYDMLMRELIELEEKYPELKTPDSPSQRVG 62
>gi|301063517|ref|ZP_07204049.1| DNA ligase (NAD(+)) [delta proteobacterium NaphS2]
gi|300442456|gb|EFK06689.1| DNA ligase (NAD(+)) [delta proteobacterium NaphS2]
Length = 671
Score = 108 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 33/62 (53%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ E++ L + +H YY LD+P D YDR+ +RL L+ + PEL D P
Sbjct: 2 EKSRQEIDELKQKIEYHNHRYYVLDDPEIPDADYDRLFQRLLELETKHPELRSPDSPTRK 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|167039197|ref|YP_001662182.1| NAD-dependent DNA ligase [Thermoanaerobacter sp. X514]
gi|256752857|ref|ZP_05493696.1| DNA ligase, NAD-dependent [Thermoanaerobacter ethanolicus CCSD1]
gi|300913208|ref|ZP_07130525.1| DNA ligase, NAD-dependent [Thermoanaerobacter sp. X561]
gi|307723778|ref|YP_003903529.1| NAD-dependent DNA ligase [Thermoanaerobacter sp. X513]
gi|254781440|sp|B0K3S1|DNLJ_THEPX RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|166853437|gb|ABY91846.1| DNA ligase, NAD-dependent [Thermoanaerobacter sp. X514]
gi|256748259|gb|EEU61324.1| DNA ligase, NAD-dependent [Thermoanaerobacter ethanolicus CCSD1]
gi|300889893|gb|EFK85038.1| DNA ligase, NAD-dependent [Thermoanaerobacter sp. X561]
gi|307580839|gb|ADN54238.1| DNA ligase, NAD-dependent [Thermoanaerobacter sp. X513]
Length = 662
Score = 108 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L + +H YY LD P +D YD + L L+E++PEL D P VG
Sbjct: 4 KERIKELREKINYHNYRYYVLDQPEISDYEYDMLMRELIELEEKYPELKTPDSPSQRVG 62
>gi|330722383|gb|EGH00233.1| DNA ligase [gamma proteobacterium IMCC2047]
Length = 258
Score = 108 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 30/65 (46%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ EVE L H YY LD P D YDR+ +L ++ Q PEL +D P
Sbjct: 1 MTSAPLRQEVEALRAQLNQHNYRYYVLDEPSIPDVEYDRLLRQLQTIEAQHPELISQDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|293609092|ref|ZP_06691395.1| DNA ligase [Acinetobacter sp. SH024]
gi|292829665|gb|EFF88027.1| DNA ligase [Acinetobacter sp. SH024]
Length = 679
Score = 108 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 35/65 (53%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ + ++ L+++ H YY +D P +D YD + +L AL+EQ+P+L D P
Sbjct: 1 MATTSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPDLVQSDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TTKVG 65
>gi|329297490|ref|ZP_08254826.1| NAD-dependent DNA ligase LigA [Plautia stali symbiont]
Length = 672
Score = 108 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 26/60 (43%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L HH+ Y+ +D P D YDR+ L L+ P+L D P VG
Sbjct: 4 VQEQITALRTTLRHHEYLYHVMDTPEIPDAEYDRLMRELRELESAHPDLITPDSPTQRVG 63
>gi|192361192|ref|YP_001982383.1| DNA ligase, NAD-dependent [Cellvibrio japonicus Ueda107]
gi|254781281|sp|B3PGQ8|DNLJ_CELJU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|190687357|gb|ACE85035.1| DNA ligase, NAD-dependent [Cellvibrio japonicus Ueda107]
Length = 680
Score = 108 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 29/62 (46%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ E+ L + +H YY LD P D YDR+ +RL L+ Q+P D P
Sbjct: 8 DDVSAEIAQLREQIRYHNYRYYALDEPQIPDAEYDRLMQRLRELEAQYPASVTPDSPTQR 67
Query: 117 VG 118
VG
Sbjct: 68 VG 69
>gi|325121133|gb|ADY80656.1| DNA ligase [Acinetobacter calcoaceticus PHEA-2]
Length = 679
Score = 108 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 35/65 (53%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ + ++ L+++ H YY +D P +D YD + +L AL+EQ+P+L D P
Sbjct: 1 MATTSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPDLVQSDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TTKVG 65
>gi|289522353|ref|ZP_06439207.1| DNA ligase, NAD-dependent [Anaerobaculum hydrogeniformans ATCC
BAA-1850]
gi|289504189|gb|EFD25353.1| DNA ligase, NAD-dependent [Anaerobaculum hydrogeniformans ATCC
BAA-1850]
Length = 674
Score = 108 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 32/64 (50%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
GEA E L K H +YY LD+P+ TD YD + L L+ +FPE+ D P
Sbjct: 4 DLGEAKKRAEELRKEIEKHNYYYYVLDSPVITDEEYDALYRGLVELERRFPEIITPDSPT 63
Query: 115 NTVG 118
VG
Sbjct: 64 QRVG 67
>gi|238752012|ref|ZP_04613496.1| DNA ligase [Yersinia rohdei ATCC 43380]
gi|238709712|gb|EEQ01946.1| DNA ligase [Yersinia rohdei ATCC 43380]
Length = 670
Score = 108 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 30/62 (48%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ ++ L HH+ YY LD P D YDR+ ++L L+ Q PEL D P
Sbjct: 2 ESIIQQINQLKTSLRHHEHQYYVLDAPEIPDAEYDRMMQQLRELEAQHPELITNDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|154248881|ref|YP_001409706.1| DNA ligase, NAD-dependent [Fervidobacterium nodosum Rt17-B1]
gi|190359256|sp|A7HJG6|DNLJ_FERNB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|154152817|gb|ABS60049.1| DNA ligase, NAD-dependent [Fervidobacterium nodosum Rt17-B1]
Length = 681
Score = 108 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 35/65 (53%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + EVE L K +H YY L P+ +D YD++ +RL L+E++PEL D P
Sbjct: 1 MVSEKIKQEVEKLRKEIEYHNYRYYVLAQPVISDEEYDKLMKRLMELEEKYPELKTPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|127513305|ref|YP_001094502.1| DNA ligase, NAD-dependent [Shewanella loihica PV-4]
gi|166216242|sp|A3QFJ5|DNLJ_SHELP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|126638600|gb|ABO24243.1| DNA ligase, NAD-dependent [Shewanella loihica PV-4]
Length = 669
Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 26/60 (43%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E++ L H YY D P D YDR+ RL L+ + PEL D P VG
Sbjct: 4 IQDEIKQLTDELNQHNYRYYVDDAPSIPDAEYDRLMRRLQELEAEHPELALADSPTQRVG 63
>gi|254502790|ref|ZP_05114941.1| DNA ligase, NAD-dependent [Labrenzia alexandrii DFL-11]
gi|222438861|gb|EEE45540.1| DNA ligase, NAD-dependent [Labrenzia alexandrii DFL-11]
Length = 725
Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 33/68 (48%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V L+ A E+E L H + Y++ D P +D YD + R A++ +FP+L
Sbjct: 18 VLDLTPEAAKAELERLASEIAEHDRRYHQEDAPTISDADYDALRRRNSAIEARFPDLILA 77
Query: 111 DHPWNTVG 118
D P VG
Sbjct: 78 DGPSAQVG 85
>gi|295688860|ref|YP_003592553.1| DNA ligase, NAD-dependent [Caulobacter segnis ATCC 21756]
gi|295430763|gb|ADG09935.1| DNA ligase, NAD-dependent [Caulobacter segnis ATCC 21756]
Length = 783
Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 35/69 (50%)
Query: 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
V L++ +A+ E+E L H Y++ DNP +D YD + R ++ +FP L
Sbjct: 5 PVADLTEAQAVEELERLADELTRHDLAYHQQDNPTISDADYDALKRRNLDIETRFPHLVR 64
Query: 110 EDHPWNTVG 118
++ P VG
Sbjct: 65 DNSPSMRVG 73
>gi|254239878|ref|ZP_04933200.1| DNA ligase [Pseudomonas aeruginosa 2192]
gi|126193256|gb|EAZ57319.1| DNA ligase [Pseudomonas aeruginosa 2192]
Length = 794
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 54 LSKGEAMIE-VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDH 112
++ +A E + L H YY LD P D YDR+ L AL+ ++P+L D
Sbjct: 1 MTDTQAAAERIAQLRTELDTHNYRYYVLDEPSIPDAEYDRLFRELQALEAEYPQLLTPDS 60
Query: 113 PWNTV 117
P V
Sbjct: 61 PTQRV 65
>gi|15596726|ref|NP_250220.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa PAO1]
gi|107100960|ref|ZP_01364878.1| hypothetical protein PaerPA_01001990 [Pseudomonas aeruginosa PACS2]
gi|218892513|ref|YP_002441382.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa LESB58]
gi|81541359|sp|Q9I3I4|DNLJ_PSEAE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254781394|sp|B7UVJ3|DNLJ_PSEA8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|9947487|gb|AAG04918.1|AE004581_5 DNA ligase [Pseudomonas aeruginosa PAO1]
gi|218772741|emb|CAW28526.1| DNA ligase [Pseudomonas aeruginosa LESB58]
Length = 794
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 54 LSKGEAMIE-VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDH 112
++ +A E + L H YY LD P D YDR+ L AL+ ++P+L D
Sbjct: 1 MTDTQAAAERIAQLRTELDTHNYRYYVLDEPSIPDAEYDRLFRELQALEAEYPQLLTPDS 60
Query: 113 PWNTV 117
P V
Sbjct: 61 PTQRV 65
>gi|254234624|ref|ZP_04927947.1| DNA ligase [Pseudomonas aeruginosa C3719]
gi|126166555|gb|EAZ52066.1| DNA ligase [Pseudomonas aeruginosa C3719]
Length = 794
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 54 LSKGEAMIE-VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDH 112
++ +A E + L H YY LD P D YDR+ L AL+ ++P+L D
Sbjct: 1 MTDTQAAAERIAQLRTELDTHNYRYYVLDEPSIPDAEYDRLFRELQALEAEYPQLLTPDS 60
Query: 113 PWNTV 117
P V
Sbjct: 61 PTQRV 65
>gi|238785571|ref|ZP_04629551.1| DNA ligase [Yersinia bercovieri ATCC 43970]
gi|238713506|gb|EEQ05538.1| DNA ligase [Yersinia bercovieri ATCC 43970]
Length = 670
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 30/62 (48%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ ++ L HH+ Y+ LD P D YDR+ ++L L+ Q PEL D P
Sbjct: 2 ESIIQQINQLRTSLRHHEHQYHVLDAPEIPDAEYDRLMQQLRDLESQHPELITSDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|326573825|gb|EGE23778.1| NAD-dependent DNA ligase [Moraxella catarrhalis O35E]
Length = 691
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 38/73 (52%)
Query: 46 DKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFP 105
D +K S + + + ++ L+K+ H YY +D P +DG YD + L L++Q P
Sbjct: 10 DTSKNNPSKANDQIIAQMRALIKLLKRHNHAYYVMDAPTISDGEYDGLRRTLMMLEQQHP 69
Query: 106 ELFDEDHPWNTVG 118
L D P NTVG
Sbjct: 70 NLIQPDSPINTVG 82
>gi|260433791|ref|ZP_05787762.1| DNA ligase, NAD-dependent [Silicibacter lacuscaerulensis ITI-1157]
gi|260417619|gb|EEX10878.1| DNA ligase, NAD-dependent [Silicibacter lacuscaerulensis ITI-1157]
Length = 708
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 32/74 (43%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
+ V L++ +A E+ L L + Y+ D P +D YD + R ++ +F
Sbjct: 1 MSNPIPVQELTEDQAKEELARLASALLRANELYHGQDAPEISDAEYDALKRRNLEIEARF 60
Query: 105 PELFDEDHPWNTVG 118
P L D P VG
Sbjct: 61 PHLKRPDSPTEQVG 74
>gi|323702801|ref|ZP_08114460.1| DNA ligase, NAD-dependent [Desulfotomaculum nigrificans DSM 574]
gi|323532189|gb|EGB22069.1| DNA ligase, NAD-dependent [Desulfotomaculum nigrificans DSM 574]
Length = 669
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 32/61 (52%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E VE L + +H YY LDNP TDG YD++ + L L+ +PEL D P V
Sbjct: 7 EIKARVEELRREINYHNHQYYVLDNPTITDGQYDQLVQELLRLENAYPELVSPDSPTQRV 66
Query: 118 G 118
G
Sbjct: 67 G 67
>gi|29140957|ref|NP_804299.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|213160907|ref|ZP_03346617.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Typhi str. E00-7866]
gi|213424270|ref|ZP_03357114.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Typhi str. E02-1180]
gi|213583650|ref|ZP_03365476.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Typhi str. E98-0664]
gi|213650852|ref|ZP_03380905.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Typhi str. J185]
gi|29136582|gb|AAO68148.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhi str.
Ty2]
Length = 671
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 27/60 (45%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L HH+ Y+ +D P D YDR+ L L+ Q P+L D P VG
Sbjct: 4 IEQQLTELRTTLRHHEYLYHVMDAPEILDAEYDRLMRELRELEAQRPDLITPDSPTQRVG 63
>gi|16761347|ref|NP_456964.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|81513487|sp|Q8Z4W4|DNLJ_SALTI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|25294013|pir||AI0809 DNA ligase (NAD) (EC 6.5.1.2) - Salmonella enterica subsp. enterica
serovar Typhi (strain CT18)
gi|16503646|emb|CAD07659.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhi]
Length = 671
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 27/60 (45%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L HH+ Y+ +D P D YDR+ L L+ Q P+L D P VG
Sbjct: 4 IEQQLTELRTTLRHHEYLYHVMDAPEILDAEYDRLMRELRELEAQRPDLITPDSPTQRVG 63
>gi|167034833|ref|YP_001670064.1| NAD-dependent DNA ligase LigA [Pseudomonas putida GB-1]
gi|190359275|sp|B0KPX3|DNLJ_PSEPG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|166861321|gb|ABY99728.1| DNA ligase, NAD-dependent [Pseudomonas putida GB-1]
Length = 776
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 25/60 (41%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
A + L H YY LD P D YDR+ L AL+ + P L D P VG
Sbjct: 3 AETRIHELRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPHLVTPDSPTQRVG 62
>gi|227498670|ref|ZP_03928814.1| DNA ligase [Acidaminococcus sp. D21]
gi|226904126|gb|EEH90044.1| DNA ligase [Acidaminococcus sp. D21]
Length = 674
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 35/65 (53%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++K EA+++ + L K + YY D P TD YD + +L A++ ++PEL D P
Sbjct: 1 MTKQEALLKAQALRKELERNSYLYYVEDMPTITDAEYDSLMRQLRAIEAEYPELVTPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQHVG 65
>gi|167647059|ref|YP_001684722.1| NAD-dependent DNA ligase [Caulobacter sp. K31]
gi|190359242|sp|B0T1N5|DNLJ_CAUSK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|167349489|gb|ABZ72224.1| DNA ligase, NAD-dependent [Caulobacter sp. K31]
Length = 792
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 34/72 (47%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
V L++ +A E+E L H Y++ D P +D YD + R ++++FP
Sbjct: 2 SQIAVADLTEAQAAEELERLADDLAAHDLRYHQQDAPTISDAEYDALKRRNLDIEDRFPH 61
Query: 107 LFDEDHPWNTVG 118
L ++ P VG
Sbjct: 62 LVRDNSPSMRVG 73
>gi|325274411|ref|ZP_08140498.1| NAD-dependent DNA ligase LigA [Pseudomonas sp. TJI-51]
gi|324100446|gb|EGB98205.1| NAD-dependent DNA ligase LigA [Pseudomonas sp. TJI-51]
Length = 776
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 25/60 (41%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
A + L H YY LD P D YDR+ L AL+ + P L D P VG
Sbjct: 3 AETRIHELRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPHLVTPDSPTQRVG 62
>gi|307266289|ref|ZP_07547829.1| DNA ligase, NAD-dependent [Thermoanaerobacter wiegelii Rt8.B1]
gi|306918667|gb|EFN48901.1| DNA ligase, NAD-dependent [Thermoanaerobacter wiegelii Rt8.B1]
Length = 662
Score = 107 bits (267), Expect = 5e-22, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 29/61 (47%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E ++ L + +H YY LD P +D YD + L L+E++PE D P V
Sbjct: 2 EPKERIKELREKINYHNYRYYVLDQPEISDYEYDMLMRELIELEEKYPEFKTPDSPSQRV 61
Query: 118 G 118
G
Sbjct: 62 G 62
>gi|170722763|ref|YP_001750451.1| NAD-dependent DNA ligase LigA [Pseudomonas putida W619]
gi|254781396|sp|B1JC06|DNLJ_PSEPW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|169760766|gb|ACA74082.1| DNA ligase, NAD-dependent [Pseudomonas putida W619]
Length = 776
Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 25/60 (41%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
A + L H YY LD P D YDR+ L AL+ + P L D P VG
Sbjct: 3 AESRIHALRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPHLVTPDSPTQRVG 62
>gi|308375959|ref|ZP_07668156.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu007]
gi|308344705|gb|EFP33556.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu007]
Length = 614
Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 35/71 (49%)
Query: 48 AKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
+ + E + + + L + HQ YY D P+ +D +D + RL+AL+EQ PEL
Sbjct: 2 SSPDADQTAPEVLRQWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALEEQHPEL 61
Query: 108 FDEDHPWNTVG 118
D P VG
Sbjct: 62 RTPDSPTQLVG 72
>gi|163794455|ref|ZP_02188426.1| NAD-dependent DNA ligase [alpha proteobacterium BAL199]
gi|159180179|gb|EDP64702.1| NAD-dependent DNA ligase [alpha proteobacterium BAL199]
Length = 696
Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 33/69 (47%)
Query: 49 KKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF 108
K V LS EA E+ L + Y+ D P+ TD YD + R A++E+FP+L
Sbjct: 10 KPVEELSDAEAKAELRRLSDAISEADRQYHVEDAPVLTDAEYDALRRRNQAIEERFPDLK 69
Query: 109 DEDHPWNTV 117
D P V
Sbjct: 70 LADSPSERV 78
>gi|215412865|ref|ZP_03421575.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis
94_M4241A]
gi|298526485|ref|ZP_07013894.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis
94_M4241A]
gi|298496279|gb|EFI31573.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis
94_M4241A]
Length = 691
Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 35/71 (49%)
Query: 48 AKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
+ + E + + + L + HQ YY D P+ +D +D + RL+AL+EQ PEL
Sbjct: 2 SSPDADQTAPEVLRQWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALEEQHPEL 61
Query: 108 FDEDHPWNTVG 118
D P VG
Sbjct: 62 RTPDSPTQLVG 72
>gi|15610151|ref|NP_217530.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis H37Rv]
gi|31794191|ref|NP_856684.1| NAD-dependent DNA ligase LigA [Mycobacterium bovis AF2122/97]
gi|121638896|ref|YP_979120.1| NAD-dependent DNA ligase LigA [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|148662865|ref|YP_001284388.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis H37Ra]
gi|148824204|ref|YP_001288958.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis F11]
gi|161350059|ref|NP_337609.2| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis CDC1551]
gi|167967816|ref|ZP_02550093.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis H37Ra]
gi|215431968|ref|ZP_03429887.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis EAS054]
gi|219559049|ref|ZP_03538125.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis T17]
gi|224991388|ref|YP_002646077.1| NAD-dependent DNA ligase [Mycobacterium bovis BCG str. Tokyo 172]
gi|254365649|ref|ZP_04981694.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis str.
Haarlem]
gi|260188040|ref|ZP_05765514.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis CPHL_A]
gi|260206343|ref|ZP_05773834.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis K85]
gi|289448688|ref|ZP_06438432.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis CPHL_A]
gi|289553196|ref|ZP_06442406.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis KZN 605]
gi|289571216|ref|ZP_06451443.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis T17]
gi|289575722|ref|ZP_06455949.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis K85]
gi|289755132|ref|ZP_06514510.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis EAS054]
gi|294993895|ref|ZP_06799586.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis 210]
gi|297635642|ref|ZP_06953422.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis KZN 4207]
gi|297732640|ref|ZP_06961758.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis KZN R506]
gi|306777310|ref|ZP_07415647.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu001]
gi|306785860|ref|ZP_07424182.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu003]
gi|306789901|ref|ZP_07428223.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu004]
gi|306794711|ref|ZP_07433013.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu005]
gi|306798954|ref|ZP_07437256.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu006]
gi|306969091|ref|ZP_07481752.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu009]
gi|306973427|ref|ZP_07486088.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu010]
gi|307081136|ref|ZP_07490306.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu011]
gi|307085740|ref|ZP_07494853.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu012]
gi|313659972|ref|ZP_07816852.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis KZN
V2475]
gi|54036987|sp|P63973|DNLJ_MYCTU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|54036988|sp|P63974|DNLJ_MYCBO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|166215822|sp|A1KN09|DNLJ_MYCBP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|166216214|sp|A5U726|DNLJ_MYCTA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254781375|sp|C1AGD0|DNLJ_MYCBT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|2791611|emb|CAA16099.1| PROBABLE DNA LIGASE [NAD DEPENDENT] LIGA (POLYDEOXYRIBONUCLEOTIDE
SYNTHASE [NAD+]) [Mycobacterium tuberculosis H37Rv]
gi|31619786|emb|CAD96726.1| PROBABLE DNA LIGASE [NAD DEPENDENT] LIGA (POLYDEOXYRIBONUCLEOTIDE
SYNTHASE [NAD+]) [Mycobacterium bovis AF2122/97]
gi|121494544|emb|CAL73025.1| Probable dna ligase [nad dependent] ligA [Mycobacterium bovis BCG
str. Pasteur 1173P2]
gi|134151162|gb|EBA43207.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis str.
Haarlem]
gi|148507017|gb|ABQ74826.1| DNA ligase (NAD dependent) LigA [Mycobacterium tuberculosis H37Ra]
gi|148722731|gb|ABR07356.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis F11]
gi|224774503|dbj|BAH27309.1| NAD-dependent DNA ligase [Mycobacterium bovis BCG str. Tokyo 172]
gi|289421646|gb|EFD18847.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis CPHL_A]
gi|289437828|gb|EFD20321.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis KZN 605]
gi|289540153|gb|EFD44731.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis K85]
gi|289544970|gb|EFD48618.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis T17]
gi|289695719|gb|EFD63148.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis EAS054]
gi|308214358|gb|EFO73757.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu001]
gi|308329532|gb|EFP18383.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu003]
gi|308333670|gb|EFP22521.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu004]
gi|308337029|gb|EFP25880.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu005]
gi|308340842|gb|EFP29693.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu006]
gi|308353381|gb|EFP42232.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu009]
gi|308357226|gb|EFP46077.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu010]
gi|308361179|gb|EFP50030.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu011]
gi|308364771|gb|EFP53622.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu012]
gi|323718395|gb|EGB27569.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis CDC1551A]
gi|326904628|gb|EGE51561.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis W-148]
gi|328457668|gb|AEB03091.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis KZN 4207]
Length = 691
Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 35/71 (49%)
Query: 48 AKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
+ + E + + + L + HQ YY D P+ +D +D + RL+AL+EQ PEL
Sbjct: 2 SSPDADQTAPEVLRQWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALEEQHPEL 61
Query: 108 FDEDHPWNTVG 118
D P VG
Sbjct: 62 RTPDSPTQLVG 72
>gi|289577826|ref|YP_003476453.1| DNA ligase, NAD-dependent [Thermoanaerobacter italicus Ab9]
gi|289527539|gb|ADD01891.1| DNA ligase, NAD-dependent [Thermoanaerobacter italicus Ab9]
Length = 662
Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 28/59 (47%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L + +H YY LD P +D YD + L L+E++PEL D P VG
Sbjct: 4 KERINELREKINYHNYRYYVLDQPEISDYEYDMLMRELIELEEKYPELKTPDSPSQRVG 62
>gi|126640855|ref|YP_001083839.1| DNA ligase [Acinetobacter baumannii ATCC 17978]
gi|322506977|gb|ADX02431.1| DNA ligase [Acinetobacter baumannii 1656-2]
gi|323516844|gb|ADX91225.1| DNA ligase, NAD-dependent [Acinetobacter baumannii TCDC-AB0715]
Length = 669
Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 31/56 (55%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L+++ H YY +D P +D YD + +L AL+EQ+PEL D P VG
Sbjct: 1 MRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQADSPTTKVG 56
>gi|90416525|ref|ZP_01224456.1| DNA ligase, NAD-dependent [marine gamma proteobacterium HTCC2207]
gi|90331724|gb|EAS46952.1| DNA ligase, NAD-dependent [marine gamma proteobacterium HTCC2207]
Length = 677
Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 28/62 (45%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ E E L H YY LD P D YDR RL +++Q PEL +D P
Sbjct: 6 EQVRAEYEQLKDELNQHNHRYYVLDEPTIPDSEYDRSMRRLQDIEQQHPELLSDDSPSQR 65
Query: 117 VG 118
VG
Sbjct: 66 VG 67
>gi|313106533|ref|ZP_07792762.1| DNA ligase [Pseudomonas aeruginosa 39016]
gi|310879264|gb|EFQ37858.1| DNA ligase [Pseudomonas aeruginosa 39016]
Length = 794
Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 54 LSKGEAMIE-VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDH 112
++ +A E + L H YY LD P D YDR+ L AL+ ++P+L D
Sbjct: 1 MTDTQAAAERIAQLRTELDTHNYRYYVLDEPSIPDAEYDRLFRELQALETEYPQLLTPDS 60
Query: 113 PWNTV 117
P V
Sbjct: 61 PTQRV 65
>gi|157363572|ref|YP_001470339.1| DNA ligase, NAD-dependent [Thermotoga lettingae TMO]
gi|190359296|sp|A8F541|DNLJ_THELT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|157314176|gb|ABV33275.1| DNA ligase, NAD-dependent [Thermotoga lettingae TMO]
Length = 678
Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
+ +E L + +H YY L +P+ +D YDR+ + L L++++PEL D P
Sbjct: 4 PEDIKKRIEKLREEIEYHNYRYYVLADPIISDEEYDRLMQELIELEKKYPELVTPDSPSQ 63
Query: 116 TVG 118
VG
Sbjct: 64 RVG 66
>gi|51597030|ref|YP_071221.1| NAD-dependent DNA ligase LigA [Yersinia pseudotuberculosis IP
32953]
gi|186896113|ref|YP_001873225.1| NAD-dependent DNA ligase LigA [Yersinia pseudotuberculosis PB1/+]
gi|81638946|sp|Q668M6|DNLJ_YERPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254781913|sp|B2K917|DNLJ_YERPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|51590312|emb|CAH21949.1| DNA ligase [Yersinia pseudotuberculosis IP 32953]
gi|186699139|gb|ACC89768.1| DNA ligase, NAD-dependent [Yersinia pseudotuberculosis PB1/+]
Length = 670
Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 30/62 (48%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ ++ L HH+ Y+ LD P D YDR+ ++L L+ Q PEL D P
Sbjct: 2 ESIIQQINQLRTSLRHHEHQYHVLDAPEIPDAEYDRMMQQLRDLEAQHPELVTNDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|296390104|ref|ZP_06879579.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa PAb1]
Length = 794
Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 54 LSKGEAMIE-VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDH 112
++ +A E + L H YY LD P D YDR+ L AL+ ++P+L D
Sbjct: 1 MTDTQAAAERIAQLRTELDTHNYRYYVLDEPSIPDAEYDRLFRELQALETEYPQLLTPDS 60
Query: 113 PWNTV 117
P V
Sbjct: 61 PTQRV 65
>gi|114767408|ref|ZP_01446210.1| DNA ligase, NAD-dependent [Pelagibaca bermudensis HTCC2601]
gi|114540493|gb|EAU43572.1| DNA ligase, NAD-dependent [Roseovarius sp. HTCC2601]
Length = 757
Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 36/69 (52%)
Query: 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
V +LS+ +A E+E L + Y+ D P +D YD + R A++E+FPEL
Sbjct: 14 DVEALSEDQARAELERLAGLLAQANLAYHTEDAPEISDADYDALKRRNVAIEERFPELKR 73
Query: 110 EDHPWNTVG 118
ED P VG
Sbjct: 74 EDSPSEQVG 82
>gi|116049473|ref|YP_791724.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa UCBPP-PA14]
gi|122258581|sp|Q02K12|DNLJ_PSEAB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|115584694|gb|ABJ10709.1| DNA ligase [Pseudomonas aeruginosa UCBPP-PA14]
Length = 794
Score = 106 bits (266), Expect = 7e-22, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 54 LSKGEAMIE-VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDH 112
++ +A E + L H YY LD P D YDR+ L AL+ ++P+L D
Sbjct: 1 MTDTQAAAERIAQLRTELDTHNYRYYVLDEPSIPDAEYDRLFRELQALETEYPQLLTPDS 60
Query: 113 PWNTV 117
P V
Sbjct: 61 PTQRV 65
>gi|215405001|ref|ZP_03417182.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis 02_1987]
gi|289746820|ref|ZP_06506198.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis 02_1987]
gi|289687348|gb|EFD54836.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis 02_1987]
Length = 691
Score = 106 bits (266), Expect = 7e-22, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 35/71 (49%)
Query: 48 AKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
+ + E + + + L + HQ YY D P+ +D +D + RL+AL+EQ PEL
Sbjct: 2 SSPDADQTAPEVLRQWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALEEQHPEL 61
Query: 108 FDEDHPWNTVG 118
D P VG
Sbjct: 62 RTPDSPTQLVG 72
>gi|153948204|ref|YP_001400300.1| NAD-dependent DNA ligase LigA [Yersinia pseudotuberculosis IP
31758]
gi|170023674|ref|YP_001720179.1| NAD-dependent DNA ligase LigA [Yersinia pseudotuberculosis YPIII]
gi|190359300|sp|A7FGC2|DNLJ_YERP3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254781915|sp|B1JFZ0|DNLJ_YERPY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|152959699|gb|ABS47160.1| DNA ligase, NAD-dependent [Yersinia pseudotuberculosis IP 31758]
gi|169750208|gb|ACA67726.1| DNA ligase, NAD-dependent [Yersinia pseudotuberculosis YPIII]
Length = 670
Score = 106 bits (266), Expect = 7e-22, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 30/62 (48%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ ++ L HH+ Y+ LD P D YDR+ ++L L+ Q PEL D P
Sbjct: 2 ESIIQQINQLRTSLRHHEHQYHVLDAPEIPDAEYDRMMQQLRDLEAQHPELVTNDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|22125389|ref|NP_668812.1| NAD-dependent DNA ligase LigA [Yersinia pestis KIM 10]
gi|45442391|ref|NP_993930.1| NAD-dependent DNA ligase LigA [Yersinia pestis biovar Microtus str.
91001]
gi|108808172|ref|YP_652088.1| NAD-dependent DNA ligase LigA [Yersinia pestis Antiqua]
gi|108811556|ref|YP_647323.1| NAD-dependent DNA ligase LigA [Yersinia pestis Nepal516]
gi|145599373|ref|YP_001163449.1| NAD-dependent DNA ligase LigA [Yersinia pestis Pestoides F]
gi|149365146|ref|ZP_01887181.1| DNA ligase [Yersinia pestis CA88-4125]
gi|162420672|ref|YP_001607138.1| NAD-dependent DNA ligase LigA [Yersinia pestis Angola]
gi|165926903|ref|ZP_02222735.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str.
F1991016]
gi|165940356|ref|ZP_02228875.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str.
IP275]
gi|166011271|ref|ZP_02232169.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166212520|ref|ZP_02238555.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str.
B42003004]
gi|167398917|ref|ZP_02304441.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167421338|ref|ZP_02313091.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167424444|ref|ZP_02316197.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|167470665|ref|ZP_02335369.1| DNA ligase, NAD-dependent [Yersinia pestis FV-1]
gi|218930038|ref|YP_002347913.1| NAD-dependent DNA ligase LigA [Yersinia pestis CO92]
gi|229838581|ref|ZP_04458740.1| DNA ligase, NAD(+)-dependent [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229895648|ref|ZP_04510819.1| DNA ligase, NAD(+)-dependent [Yersinia pestis Pestoides A]
gi|229899147|ref|ZP_04514290.1| DNA ligase, NAD(+)-dependent [Yersinia pestis biovar Orientalis
str. India 195]
gi|229901826|ref|ZP_04516947.1| DNA ligase, NAD(+)-dependent [Yersinia pestis Nepal516]
gi|270490015|ref|ZP_06207089.1| DNA ligase (NAD(+)) [Yersinia pestis KIM D27]
gi|122980211|sp|Q1CJV7|DNLJ_YERPN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|123372308|sp|Q1C5X9|DNLJ_YERPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|123776939|sp|Q7CJF3|DNLJ_YERPE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|166216255|sp|A4TMG4|DNLJ_YERPP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254781914|sp|A9QZH0|DNLJ_YERPG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|21958274|gb|AAM85063.1|AE013752_4 DNA ligase [Yersinia pestis KIM 10]
gi|45437255|gb|AAS62807.1| DNA ligase [Yersinia pestis biovar Microtus str. 91001]
gi|108775204|gb|ABG17723.1| DNA ligase [Yersinia pestis Nepal516]
gi|108780085|gb|ABG14143.1| DNA ligase [Yersinia pestis Antiqua]
gi|115348649|emb|CAL21593.1| DNA ligase [Yersinia pestis CO92]
gi|145211069|gb|ABP40476.1| DNA ligase [Yersinia pestis Pestoides F]
gi|149291559|gb|EDM41633.1| DNA ligase [Yersinia pestis CA88-4125]
gi|162353487|gb|ABX87435.1| DNA ligase, NAD-dependent [Yersinia pestis Angola]
gi|165911711|gb|EDR30369.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str.
IP275]
gi|165921254|gb|EDR38478.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str.
F1991016]
gi|165989949|gb|EDR42250.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166206451|gb|EDR50931.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str.
B42003004]
gi|166960827|gb|EDR56848.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167051421|gb|EDR62829.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167056326|gb|EDR66095.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|229680722|gb|EEO76817.1| DNA ligase, NAD(+)-dependent [Yersinia pestis Nepal516]
gi|229687549|gb|EEO79622.1| DNA ligase, NAD(+)-dependent [Yersinia pestis biovar Orientalis
str. India 195]
gi|229694947|gb|EEO84994.1| DNA ligase, NAD(+)-dependent [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229701454|gb|EEO89482.1| DNA ligase, NAD(+)-dependent [Yersinia pestis Pestoides A]
gi|270338519|gb|EFA49296.1| DNA ligase (NAD(+)) [Yersinia pestis KIM D27]
Length = 670
Score = 106 bits (266), Expect = 7e-22, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 30/62 (48%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ ++ L HH+ Y+ LD P D YDR+ ++L L+ Q PEL D P
Sbjct: 2 ESIIQQINQLRTSLRHHEHQYHVLDAPEIPDAEYDRMMQQLRDLEAQHPELVTNDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|307132386|ref|YP_003884402.1| DNA ligase, NAD(+)-dependent [Dickeya dadantii 3937]
gi|306529915|gb|ADM99845.1| DNA ligase, NAD(+)-dependent [Dickeya dadantii 3937]
Length = 683
Score = 106 bits (266), Expect = 7e-22, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
++K +S +++E L +H+ Y+ D P D YD++ L L++ PE
Sbjct: 5 ESKPADDIST--VSVQIEALRAQLRYHEYKYHVEDAPEIPDAEYDKLMNALKTLEQAHPE 62
Query: 107 LFDEDHPWNTVG 118
L D P VG
Sbjct: 63 LVTPDSPTQRVG 74
>gi|152984776|ref|YP_001349158.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa PA7]
gi|190359272|sp|A6V7X3|DNLJ_PSEA7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|150959934|gb|ABR81959.1| DNA ligase, NAD-dependent [Pseudomonas aeruginosa PA7]
Length = 794
Score = 106 bits (266), Expect = 7e-22, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 54 LSKGEAMIE-VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDH 112
++ +A E + L H YY LD P D YDR+ L AL+ + P+L D
Sbjct: 1 MTDTQAAAERIAQLRTELDTHNYRYYVLDEPSIPDAEYDRLFRELQALEAEHPQLLTPDS 60
Query: 113 PWNTV 117
P V
Sbjct: 61 PTQRV 65
>gi|320014458|gb|ADV98029.1| DNA ligase, NAD(+)-dependent [Yersinia pestis biovar Medievalis
str. Harbin 35]
Length = 670
Score = 106 bits (266), Expect = 8e-22, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 30/62 (48%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ ++ L HH+ Y+ LD P D YDR+ ++L L+ Q PEL D P
Sbjct: 2 ESIIQQINQLRTSLRHHEHQYHVLDAPEIPDAEYDRMMQQLRDLEAQHPELVTNDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|53803401|ref|YP_114852.1| DNA ligase, NAD-dependent [Methylococcus capsulatus str. Bath]
gi|81681278|sp|Q604U8|DNLJ_METCA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|53757162|gb|AAU91453.1| DNA ligase, NAD-dependent [Methylococcus capsulatus str. Bath]
Length = 673
Score = 106 bits (266), Expect = 8e-22, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 33/63 (52%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
E + + L + H YYRLD+PL TD YDR+ L A++ ++PEL D P
Sbjct: 4 PAEVVEKARKLREEIEFHNVRYYRLDDPLITDAEYDRLMAELLAIEARYPELVTPDSPTQ 63
Query: 116 TVG 118
VG
Sbjct: 64 RVG 66
>gi|330502846|ref|YP_004379715.1| NAD-dependent DNA ligase LigA [Pseudomonas mendocina NK-01]
gi|328917132|gb|AEB57963.1| NAD-dependent DNA ligase LigA [Pseudomonas mendocina NK-01]
Length = 786
Score = 106 bits (266), Expect = 8e-22, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 27/61 (44%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+A + L H YY LD P D YDR+ L AL+ + PEL + P V
Sbjct: 3 DAAQRISELRNELDAHNYRYYVLDEPSVPDAEYDRLFRELQALEAEHPELVTPESPTQRV 62
Query: 118 G 118
G
Sbjct: 63 G 63
>gi|326570074|gb|EGE20120.1| NAD-dependent DNA ligase [Moraxella catarrhalis BC7]
Length = 691
Score = 106 bits (266), Expect = 8e-22, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 38/73 (52%)
Query: 46 DKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFP 105
+ +K S + + + ++ L+K+ H YY +D P +DG YD + L L++Q P
Sbjct: 10 NTSKNNPSKANDQIIAQMRALIKLLKRHNHAYYVMDAPTISDGEYDGLRRTLMMLEQQHP 69
Query: 106 ELFDEDHPWNTVG 118
L D P NTVG
Sbjct: 70 NLIQPDSPINTVG 82
>gi|262369277|ref|ZP_06062605.1| DNA ligase [Acinetobacter johnsonii SH046]
gi|262315345|gb|EEY96384.1| DNA ligase [Acinetobacter johnsonii SH046]
Length = 679
Score = 106 bits (266), Expect = 8e-22, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 33/60 (55%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ ++ L++I H YY +D P D YD++ +L AL+EQ+PE D P N VG
Sbjct: 7 VVAQMRQLIQILAQHNHAYYVMDQPTIADSEYDQLFHQLKALEEQYPEYIQPDSPINKVG 66
>gi|297570387|ref|YP_003691731.1| DNA ligase, NAD-dependent [Desulfurivibrio alkaliphilus AHT2]
gi|296926302|gb|ADH87112.1| DNA ligase, NAD-dependent [Desulfurivibrio alkaliphilus AHT2]
Length = 680
Score = 106 bits (266), Expect = 8e-22, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 30/63 (47%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
K +A V L + +H YY LD+P D YD + L L+E++P L D P
Sbjct: 11 KEQARQRVAELREQIRYHNHRYYVLDDPEIPDAEYDALFRELQELEERYPGLAGADSPSR 70
Query: 116 TVG 118
VG
Sbjct: 71 QVG 73
>gi|212710592|ref|ZP_03318720.1| hypothetical protein PROVALCAL_01658 [Providencia alcalifaciens DSM
30120]
gi|212686673|gb|EEB46201.1| hypothetical protein PROVALCAL_01658 [Providencia alcalifaciens DSM
30120]
Length = 678
Score = 106 bits (266), Expect = 8e-22, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
+ K +L++ +++ L + HH+ Y+ +D P D YD++ + L AL+ +
Sbjct: 1 MTTKKNPDALTQ-----KIDALKQQLRHHEYLYHVMDAPEIPDVEYDKLMQELKALEAEH 55
Query: 105 PELFDEDHPWNTVG 118
PEL D P VG
Sbjct: 56 PELITTDSPTQRVG 69
>gi|182677699|ref|YP_001831845.1| DNA ligase, NAD-dependent [Beijerinckia indica subsp. indica ATCC
9039]
gi|254781257|sp|B2IGH4|DNLJ_BEII9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|182633582|gb|ACB94356.1| DNA ligase, NAD-dependent [Beijerinckia indica subsp. indica ATCC
9039]
Length = 699
Score = 106 bits (266), Expect = 8e-22, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 35/74 (47%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
+ K + SLS +A E L + H + YY+ D P +D YD + R +AL+ F
Sbjct: 1 MTVQKPIESLSPAQAKREHRRLGEQITEHDRLYYQEDAPRVSDAEYDALRRRYEALETAF 60
Query: 105 PELFDEDHPWNTVG 118
PEL + +G
Sbjct: 61 PELVSAESLTKKIG 74
>gi|163868703|ref|YP_001609915.1| NAD-dependent DNA ligase LigA [Bartonella tribocorum CIP 105476]
gi|190359235|sp|A9IW95|DNLJ_BART1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|161018362|emb|CAK01920.1| DNA ligase [Bartonella tribocorum CIP 105476]
Length = 719
Score = 106 bits (265), Expect = 9e-22, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 34/68 (50%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
+ +L+ EA E+E+L K H Y R D P +D YD + R ++ FPEL
Sbjct: 6 IKNLTVVEAERELEWLAKEIARHDVLYNRDDQPEISDAEYDALRRRNAEIEALFPELIRV 65
Query: 111 DHPWNTVG 118
D P + +G
Sbjct: 66 DSPSHKIG 73
>gi|308187689|ref|YP_003931820.1| DNA ligase [Pantoea vagans C9-1]
gi|308058199|gb|ADO10371.1| DNA ligase [Pantoea vagans C9-1]
Length = 672
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 27/56 (48%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L HH+ Y+ +D P D YDR+ L L+E+ P+L D P VG
Sbjct: 8 ITELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRQLEEEHPDLITPDSPTQRVG 63
>gi|312962450|ref|ZP_07776941.1| DNA ligase [Pseudomonas fluorescens WH6]
gi|311283377|gb|EFQ61967.1| DNA ligase [Pseudomonas fluorescens WH6]
Length = 789
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 26/60 (43%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
A + L H Y+ LD P D YDR+ L AL+ + PEL D P VG
Sbjct: 4 AHTRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAEHPELVTRDSPTQRVG 63
>gi|226327977|ref|ZP_03803495.1| hypothetical protein PROPEN_01868 [Proteus penneri ATCC 35198]
gi|225203681|gb|EEG86035.1| hypothetical protein PROPEN_01868 [Proteus penneri ATCC 35198]
Length = 505
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L HH+ Y+ +D P D YDR+ L AL+ ++PEL D P VG
Sbjct: 6 QQKIDKLRVTLRHHEYLYHVMDAPEIPDAEYDRLMNELKALEAEYPELITSDSPTQRVG 64
>gi|146307768|ref|YP_001188233.1| NAD-dependent DNA ligase LigA [Pseudomonas mendocina ymp]
gi|190359273|sp|A4XVY5|DNLJ_PSEMY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|145575969|gb|ABP85501.1| DNA ligase, NAD-dependent [Pseudomonas mendocina ymp]
Length = 786
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 27/61 (44%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+A + L H YY LD P D YDR+ L AL+ + PEL + P V
Sbjct: 3 DAAQRISELRNELDAHNYRYYVLDEPSVPDAEYDRLFRELQALEAEHPELVTPESPTQRV 62
Query: 118 G 118
G
Sbjct: 63 G 63
>gi|261822799|ref|YP_003260905.1| NAD-dependent DNA ligase LigA [Pectobacterium wasabiae WPP163]
gi|261606812|gb|ACX89298.1| DNA ligase, NAD-dependent [Pectobacterium wasabiae WPP163]
Length = 681
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 29/60 (48%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ V L ++ HH+ Y+ D P D YD++ + L AL+ PEL D P VG
Sbjct: 11 VALRVAELRRVLRHHEYKYHVEDAPEIPDSEYDKLMQELKALEADHPELVTSDSPTQRVG 70
>gi|332525978|ref|ZP_08402119.1| DNA ligase (NAD+) [Rubrivivax benzoatilyticus JA2]
gi|332109529|gb|EGJ10452.1| DNA ligase (NAD+) [Rubrivivax benzoatilyticus JA2]
Length = 686
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 30/64 (46%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+S A L +I HH YY LD P D YDR+ + L A++ + P+L D P
Sbjct: 1 MSPTSAAERAAELRRILSHHAHRYYVLDAPEIPDAEYDRLFQELQAIESEHPDLLTPDSP 60
Query: 114 WNTV 117
+
Sbjct: 61 TQRI 64
>gi|16125769|ref|NP_420333.1| DNA ligase, NAD-dependent [Caulobacter crescentus CB15]
gi|221234527|ref|YP_002516963.1| NAD-dependent DNA ligase [Caulobacter crescentus NA1000]
gi|81535469|sp|Q9A842|DNLJ_CAUCR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254781280|sp|B8H5Y7|DNLJ_CAUCN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|13422903|gb|AAK23501.1| DNA ligase, NAD-dependent [Caulobacter crescentus CB15]
gi|220963699|gb|ACL95055.1| NAD-dependent DNA ligase [Caulobacter crescentus NA1000]
Length = 783
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 36/72 (50%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
V L++ +A+ ++E L + H Y++ DNP +D YD + R ++ +FP
Sbjct: 2 SQIPVADLTEAQAVEDLERLADLLATHDIAYHQEDNPTVSDAEYDALKRRNLDIETRFPH 61
Query: 107 LFDEDHPWNTVG 118
L ++ P VG
Sbjct: 62 LVRDNSPSMRVG 73
>gi|320173862|gb|EFW49042.1| DNA ligase [Shigella dysenteriae CDC 74-1112]
Length = 671
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 26/62 (41%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ L HH+ Y+ +D P D YDR+ L L+ + EL D P
Sbjct: 2 ESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHLELITPDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|304398312|ref|ZP_07380186.1| DNA ligase, NAD-dependent [Pantoea sp. aB]
gi|304354178|gb|EFM18551.1| DNA ligase, NAD-dependent [Pantoea sp. aB]
Length = 672
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 27/56 (48%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L HH+ Y+ +D P D YDR+ L L+E+ P+L D P VG
Sbjct: 8 ITELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRQLEEEHPDLITPDSPTQRVG 63
>gi|119774653|ref|YP_927393.1| DNA ligase (NAD(+)) [Shewanella amazonensis SB2B]
gi|166216239|sp|A1S5R7|DNLJ_SHEAM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|119767153|gb|ABL99723.1| DNA ligase (NAD(+)) [Shewanella amazonensis SB2B]
Length = 681
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 30/64 (46%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
+ + E++ L H YY D P D YDR+ +L AL+ ++P+ + D P
Sbjct: 10 TIMQVKAEIQRLTAEINRHNIAYYVQDAPSIPDAEYDRLMNQLKALEAEYPQFAEPDSPT 69
Query: 115 NTVG 118
VG
Sbjct: 70 QRVG 73
>gi|121998657|ref|YP_001003444.1| DNA ligase, NAD-dependent [Halorhodospira halophila SL1]
gi|166215780|sp|A1WY80|DNLJ_HALHL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|121590062|gb|ABM62642.1| DNA ligase, NAD-dependent [Halorhodospira halophila SL1]
Length = 711
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 27/63 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
++ +A + L H YY LD P +D YD + L L+ +P+L D P
Sbjct: 7 TREQAQQRMAQLRGEISEHDYHYYVLDRPTISDAEYDALFRELQRLEAAYPDLVSSDSPT 66
Query: 115 NTV 117
V
Sbjct: 67 QRV 69
>gi|317153517|ref|YP_004121565.1| DNA ligase, NAD-dependent [Desulfovibrio aespoeensis Aspo-2]
gi|316943768|gb|ADU62819.1| DNA ligase, NAD-dependent [Desulfovibrio aespoeensis Aspo-2]
Length = 678
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 32/65 (49%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ E + +L + HH YY LD+P +D YD + L AL+ PEL D + P
Sbjct: 1 MASSEIIDRAAWLRERIEHHNHRYYVLDDPEISDAEYDALFRELAALEAAHPELDDANSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TRRVG 65
>gi|251793989|ref|YP_003008721.1| NAD-dependent DNA ligase LigA [Aggregatibacter aphrophilus NJ8700]
gi|247535388|gb|ACS98634.1| DNA ligase, NAD-dependent [Aggregatibacter aphrophilus NJ8700]
Length = 671
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L K +H+ Y+ LD P D YDR+ +L AL++Q P L D P VG
Sbjct: 5 IQQQIDDLRKTLRYHEYQYHVLDEPQIPDSEYDRLFHQLKALEQQHPALITADSPTQRVG 64
>gi|297544111|ref|YP_003676413.1| NAD-dependent DNA ligase [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
gi|296841886|gb|ADH60402.1| DNA ligase, NAD-dependent [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
Length = 662
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L + +H YY LD P +D YD + L L+E++PEL D P VG
Sbjct: 4 KERIKELREKINYHNYKYYVLDQPEISDYEYDMLMRELIELEEKYPELKTPDSPSQRVG 62
>gi|262280095|ref|ZP_06057880.1| DNA ligase [Acinetobacter calcoaceticus RUH2202]
gi|262260446|gb|EEY79179.1| DNA ligase [Acinetobacter calcoaceticus RUH2202]
Length = 692
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 34/65 (52%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ + ++ L+++ H YY +D P +D YD + +L AL+EQ+PE D P
Sbjct: 14 MATTSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPEQVQSDSP 73
Query: 114 WNTVG 118
VG
Sbjct: 74 TTKVG 78
>gi|26990965|ref|NP_746390.1| NAD-dependent DNA ligase LigA [Pseudomonas putida KT2440]
gi|81439923|sp|Q88F25|DNLJ_PSEPK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|24985989|gb|AAN69854.1|AE016624_5 DNA ligase, NAD-dependent [Pseudomonas putida KT2440]
Length = 776
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 25/60 (41%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
A + L H YY LD P D YDR+ L AL+ + P L D P VG
Sbjct: 3 AETRILELRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPHLVTPDSPTQRVG 62
>gi|284006788|emb|CBA72055.1| DNA ligase [Arsenophonus nasoniae]
Length = 670
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 27/56 (48%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L + HH+ Y+ LD P D YDR+ + L L+ + PE D P VG
Sbjct: 8 LARLKQQLRHHEYLYHVLDTPEIPDAEYDRLMQELKKLEAEHPEWITADSPTQRVG 63
>gi|220935192|ref|YP_002514091.1| DNA ligase (NAD(+)) [Thioalkalivibrio sp. HL-EbGR7]
gi|254781444|sp|B8GTL0|DNLJ_THISH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|219996502|gb|ACL73104.1| DNA ligase (NAD(+)) [Thioalkalivibrio sp. HL-EbGR7]
Length = 675
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 27/63 (42%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
+ V L +H YY LD+P D YD + L L+ ++PEL D P
Sbjct: 5 PEKVRKRVASLRDELDYHNHRYYVLDDPEIPDAAYDALMRELQDLEAKYPELVTPDSPTQ 64
Query: 116 TVG 118
VG
Sbjct: 65 RVG 67
>gi|262375659|ref|ZP_06068891.1| DNA ligase, NAD-dependent [Acinetobacter lwoffii SH145]
gi|262309262|gb|EEY90393.1| DNA ligase, NAD-dependent [Acinetobacter lwoffii SH145]
Length = 679
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 34/62 (54%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ ++ L+++ H YY +D P D YD++ +L AL++Q+P+L D P +
Sbjct: 5 ATVIAQMRQLIQLLAKHNHAYYVMDQPSIEDSEYDQLFHQLKALEQQYPDLIQSDSPTDK 64
Query: 117 VG 118
VG
Sbjct: 65 VG 66
>gi|227114832|ref|ZP_03828488.1| NAD-dependent DNA ligase LigA [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 684
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 30/60 (50%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
A + V L ++ HH+ Y+ D P D YD++ + L AL+ PEL D P VG
Sbjct: 14 AALRVAELRRVLRHHEYKYHVEDAPEIPDIEYDKLMQELKALEADHPELVTSDSPTQRVG 73
>gi|297616809|ref|YP_003701968.1| DNA ligase, NAD-dependent [Syntrophothermus lipocalidus DSM 12680]
gi|297144646|gb|ADI01403.1| DNA ligase, NAD-dependent [Syntrophothermus lipocalidus DSM 12680]
Length = 668
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 28/59 (47%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E L + H YY LD PL +D YDR+ L L++ +P+L D P VG
Sbjct: 5 RERAEKLREEIRKHDYHYYVLDQPLISDAEYDRLFRELVELEQAYPDLVTPDSPTQRVG 63
>gi|242238286|ref|YP_002986467.1| NAD-dependent DNA ligase LigA [Dickeya dadantii Ech703]
gi|242130343|gb|ACS84645.1| DNA ligase, NAD-dependent [Dickeya dadantii Ech703]
Length = 684
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 32/74 (43%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
+ + K + A ++++ L +H+ Y+ D P D YD++ L L++
Sbjct: 1 MSEKKPMPMNDTSAAAVQIDALRAQLRYHEYKYHVEDAPEIPDAEYDKLMNALKLLEQAH 60
Query: 105 PELFDEDHPWNTVG 118
PE D P VG
Sbjct: 61 PEWVTSDSPTQRVG 74
>gi|258514074|ref|YP_003190296.1| DNA ligase, NAD-dependent [Desulfotomaculum acetoxidans DSM 771]
gi|257777779|gb|ACV61673.1| DNA ligase, NAD-dependent [Desulfotomaculum acetoxidans DSM 771]
Length = 677
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 33/65 (50%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ EA V L + H YY +DNP+ D YDR+ L AL++QFP+L E P
Sbjct: 1 MELKEAGKRVLELRREIEEHNYNYYVMDNPVIGDAEYDRLMLELTALEQQFPDLLSEHSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|313497885|gb|ADR59251.1| LigA [Pseudomonas putida BIRD-1]
Length = 776
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 25/60 (41%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
A + L H YY LD P D YDR+ L AL+ + P L D P VG
Sbjct: 3 AETRILELRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPHLVTPDSPTQRVG 62
>gi|326574755|gb|EGE24691.1| NAD-dependent DNA ligase [Moraxella catarrhalis 101P30B1]
Length = 691
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 37/73 (50%)
Query: 46 DKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFP 105
D +K S + + + ++ L+K+ H YY +D P +D YD + L L++Q P
Sbjct: 10 DTSKNNPSKANDQIIAQMRALIKLLKRHNHAYYVMDAPTISDDEYDGLRRTLMMLEQQHP 69
Query: 106 ELFDEDHPWNTVG 118
L D P NTVG
Sbjct: 70 NLIQPDSPINTVG 82
>gi|326572929|gb|EGE22914.1| NAD-dependent DNA ligase [Moraxella catarrhalis CO72]
Length = 691
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 37/73 (50%)
Query: 46 DKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFP 105
D +K S + + + ++ L+K+ H YY +D P +D YD + L L++Q P
Sbjct: 10 DTSKNNPSKANDQIIAQMRALIKLLKRHNHAYYVMDAPTISDDEYDGLRRTLMMLEQQHP 69
Query: 106 ELFDEDHPWNTVG 118
L D P NTVG
Sbjct: 70 NLIQPDSPINTVG 82
>gi|326569993|gb|EGE20040.1| NAD-dependent DNA ligase [Moraxella catarrhalis BC1]
Length = 691
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 37/73 (50%)
Query: 46 DKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFP 105
D +K S + + + ++ L+K+ H YY +D P +D YD + L L++Q P
Sbjct: 10 DTSKNNPSKANDQIIAQMRALIKLLKRHNHAYYVMDAPTISDDEYDGLRRTLMMLEQQHP 69
Query: 106 ELFDEDHPWNTVG 118
L D P NTVG
Sbjct: 70 NLIQPDSPINTVG 82
>gi|326564268|gb|EGE14498.1| NAD-dependent DNA ligase [Moraxella catarrhalis 103P14B1]
Length = 691
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 37/73 (50%)
Query: 46 DKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFP 105
D +K S + + + ++ L+K+ H YY +D P +D YD + L L++Q P
Sbjct: 10 DTSKNNPSKANDQIIAQMRALIKLLKRHNHAYYVMDAPTISDDEYDGLRRTLMMLEQQHP 69
Query: 106 ELFDEDHPWNTVG 118
L D P NTVG
Sbjct: 70 NLIQPDSPINTVG 82
>gi|296113927|ref|YP_003627865.1| NAD-dependent DNA ligase [Moraxella catarrhalis RH4]
gi|295921621|gb|ADG61972.1| NAD-dependent DNA ligase [Moraxella catarrhalis RH4]
Length = 691
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 37/73 (50%)
Query: 46 DKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFP 105
D +K S + + + ++ L+K+ H YY +D P +D YD + L L++Q P
Sbjct: 10 DTSKNNPSKANDQIIAQMRALIKLLKRHNHAYYVMDAPTISDDEYDGLRRTLMMLEQQHP 69
Query: 106 ELFDEDHPWNTVG 118
L D P NTVG
Sbjct: 70 NLIQPDSPINTVG 82
>gi|326390897|ref|ZP_08212448.1| DNA ligase, NAD-dependent [Thermoanaerobacter ethanolicus JW 200]
gi|325993045|gb|EGD51486.1| DNA ligase, NAD-dependent [Thermoanaerobacter ethanolicus JW 200]
Length = 662
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 28/59 (47%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
V+ L + +H YY LD P +D YD + L L+E++PE D P VG
Sbjct: 4 KERVKELREKINYHNYRYYVLDQPEISDYEYDMLMRELIELEEKYPEFKTPDSPSQRVG 62
>gi|148546832|ref|YP_001266934.1| NAD-dependent DNA ligase LigA [Pseudomonas putida F1]
gi|190359274|sp|A5W0U0|DNLJ_PSEP1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|148510890|gb|ABQ77750.1| DNA ligase, NAD-dependent [Pseudomonas putida F1]
Length = 776
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 25/60 (41%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
A + L H YY LD P D YDR+ L AL+ + P L D P VG
Sbjct: 3 AETRILELRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPHLVTPDSPTQRVG 62
>gi|323228068|gb|EGA12205.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
Length = 276
Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 27/60 (45%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L HH+ Y+ +D P D YDR+ L L+ Q P+L D P VG
Sbjct: 4 IEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVG 63
>gi|289432483|ref|YP_003462356.1| DNA ligase, NAD-dependent [Dehalococcoides sp. GT]
gi|288946203|gb|ADC73900.1| DNA ligase, NAD-dependent [Dehalococcoides sp. GT]
Length = 680
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 30/58 (51%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
IEVE L + H + YY DNP +D YD + RL L+E PEL D P VG
Sbjct: 9 IEVENLRREINRHNQLYYVQDNPEISDAQYDTLISRLKELEEAHPELVTPDSPTQKVG 66
>gi|298293088|ref|YP_003695027.1| DNA ligase, NAD-dependent [Starkeya novella DSM 506]
gi|296929599|gb|ADH90408.1| DNA ligase, NAD-dependent [Starkeya novella DSM 506]
Length = 725
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 32/69 (46%)
Query: 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
V L+ EA E L H + YY+ D P +D YD + R +A++ QFPEL
Sbjct: 9 DVEKLTADEAAKEHARLGDEIAGHDRRYYQDDAPSVSDADYDALRRRYEAIEAQFPELKG 68
Query: 110 EDHPWNTVG 118
D VG
Sbjct: 69 IDSLSEKVG 77
>gi|294635487|ref|ZP_06713972.1| DNA ligase, NAD-dependent [Edwardsiella tarda ATCC 23685]
gi|291091145|gb|EFE23706.1| DNA ligase, NAD-dependent [Edwardsiella tarda ATCC 23685]
Length = 675
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 31/60 (51%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++E L HH+ YY LD P TD YDR+ +L AL+ +P+L D P VG
Sbjct: 5 IEQQLEQLRAALRHHEYQYYVLDEPQVTDAEYDRLMMQLKALESDYPQLVTADSPSQRVG 64
>gi|268323600|emb|CBH37188.1| DNA ligase [uncultured archaeon]
Length = 667
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L + +H YY LD P +D YDR+ L+ L+ ++PEL D P +G
Sbjct: 14 IAQLREKIHYHNYRYYVLDEPEISDAEYDRLFVELEELERKYPELITPDSPTQRIG 69
>gi|218754780|ref|ZP_03533576.1| NAD-dependent DNA ligase LigA [Mycobacterium tuberculosis GM 1503]
gi|289763195|ref|ZP_06522573.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis GM
1503]
gi|289710701|gb|EFD74717.1| DNA ligase [NAD dependent] ligA [Mycobacterium tuberculosis GM
1503]
Length = 690
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 35/71 (49%)
Query: 48 AKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
+ + E + + + L + HQ YY D P+ +D +D + RL+AL+EQ PEL
Sbjct: 2 SSPDADQTAPEVLRQWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALEEQHPEL 61
Query: 108 FDEDHPWNTVG 118
D P VG
Sbjct: 62 RTPDSPTQLVG 72
>gi|317401960|gb|EFV82562.1| DNA ligase [Achromobacter xylosoxidans C54]
Length = 699
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 24/60 (40%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
A L H YY D+P +D YDR+ L L+ PEL + P VG
Sbjct: 9 AAETAARLRAEIEQHNVRYYVYDDPSISDAEYDRLMRELQDLEAAHPELVTPESPTQRVG 68
>gi|227328979|ref|ZP_03833003.1| NAD-dependent DNA ligase LigA [Pectobacterium carotovorum subsp.
carotovorum WPP14]
Length = 684
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
A + V L ++ HH+ Y+ D P D YD++ + L +L+ PEL D P VG
Sbjct: 14 AALRVAELRRVLRHHEYKYHVEDAPEIPDVEYDKLMQELKSLEAAHPELVTSDSPTQRVG 73
>gi|240850882|ref|YP_002972282.1| DNA ligase [Bartonella grahamii as4aup]
gi|240268005|gb|ACS51593.1| DNA ligase [Bartonella grahamii as4aup]
Length = 719
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 33/67 (49%)
Query: 52 TSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
+L+ EA E+E+L K H Y R D P +D YD + R ++ FPEL D
Sbjct: 7 KNLTAVEAESELEWLAKEIARHDVLYNRDDQPEISDAEYDALRRRNAEIEALFPELIRVD 66
Query: 112 HPWNTVG 118
P + +G
Sbjct: 67 SPSHKIG 73
>gi|291296053|ref|YP_003507451.1| DNA ligase NAD-dependent [Meiothermus ruber DSM 1279]
gi|290471012|gb|ADD28431.1| DNA ligase, NAD-dependent [Meiothermus ruber DSM 1279]
Length = 666
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 31/59 (52%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L ++ +H YY LD P +D YDR+ + L AL+E PEL D P TVG
Sbjct: 5 KQRIMELRELIRYHNYRYYVLDKPEISDAEYDRLLQELRALEEAHPELIIPDSPTQTVG 63
>gi|308050127|ref|YP_003913693.1| DNA ligase, NAD-dependent [Ferrimonas balearica DSM 9799]
gi|307632317|gb|ADN76619.1| DNA ligase, NAD-dependent [Ferrimonas balearica DSM 9799]
Length = 685
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 30/62 (48%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+A +E L ++ + YY LDNP D YDR+ L AL+ + P L D P
Sbjct: 11 SQAKDRIEQLSQLLNDYNHQYYVLDNPSVPDAEYDRLMRELQALEAEHPALRQPDSPTQR 70
Query: 117 VG 118
VG
Sbjct: 71 VG 72
>gi|77458028|ref|YP_347533.1| NAD-dependent DNA ligase LigA [Pseudomonas fluorescens Pf0-1]
gi|123731132|sp|Q3KFB2|DNLJ_PSEPF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|77382031|gb|ABA73544.1| DNA ligase [Pseudomonas fluorescens Pf0-1]
Length = 785
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 25/60 (41%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
A + L H Y+ LD P D YDR+ L AL+ PEL D P VG
Sbjct: 4 AKDRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAANPELITSDSPTQRVG 63
>gi|104780921|ref|YP_607419.1| NAD-dependent DNA ligase LigA [Pseudomonas entomophila L48]
gi|122985912|sp|Q1ICK0|DNLJ_PSEE4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|95109908|emb|CAK14613.1| NAD-dependent DNA ligase [Pseudomonas entomophila L48]
Length = 784
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 26/60 (43%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
A + L H YY LD P D YDR+ L AL+ + P+L D P VG
Sbjct: 3 AESRIHALRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPQLVTADSPTQRVG 62
>gi|50084060|ref|YP_045570.1| DNA ligase [Acinetobacter sp. ADP1]
gi|81393600|sp|Q6FDW0|DNLJ_ACIAD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|49530036|emb|CAG67748.1| DNA ligase [Acinetobacter sp. ADP1]
Length = 676
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + + ++ L+++ H YY +D P TD YD++ +L AL+ ++PEL D P
Sbjct: 2 MQPADIVAQMRQLIQLIAKHNHAYYVMDQPSITDNEYDQLFHQLKALEAEYPELTQADTP 61
Query: 114 WNTVG 118
N VG
Sbjct: 62 TNRVG 66
>gi|259502571|ref|ZP_05745473.1| DNA ligase [Lactobacillus antri DSM 16041]
gi|259169461|gb|EEW53956.1| DNA ligase [Lactobacillus antri DSM 16041]
Length = 678
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 37/74 (50%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
+DK V L+ A E+ L + + YY DNP D +YDR +RL L+++F
Sbjct: 1 MDKQTPVDQLTLAAAKQEIAPLRQQLTKWGREYYEQDNPSVEDYVYDRAYQRLVELEQRF 60
Query: 105 PELFDEDHPWNTVG 118
PEL D P VG
Sbjct: 61 PELKTSDSPTQHVG 74
>gi|229591993|ref|YP_002874112.1| NAD-dependent DNA ligase LigA [Pseudomonas fluorescens SBW25]
gi|254781395|sp|C3JXX6|DNLJ_PSEFS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|229363859|emb|CAY51325.1| DNA ligase [Pseudomonas fluorescens SBW25]
Length = 785
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 26/60 (43%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
A + L H Y+ LD P D YDR+ L AL+ + P+L D P VG
Sbjct: 4 AHTRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAEHPDLVTRDSPTQRVG 63
>gi|270262950|ref|ZP_06191221.1| DNA ligase, NAD-dependent [Serratia odorifera 4Rx13]
gi|270043634|gb|EFA16727.1| DNA ligase, NAD-dependent [Serratia odorifera 4Rx13]
Length = 673
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ ++ L HH+ Y+ LD P D YDR+ L L+ PEL D P
Sbjct: 2 ESIIQQINQLRTSLRHHEYQYHVLDAPEVPDAEYDRLMNELRELENAHPELITADSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|83647417|ref|YP_435852.1| DNA ligase, NAD-dependent [Hahella chejuensis KCTC 2396]
gi|123767368|sp|Q2SD47|DNLJ_HAHCH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|83635460|gb|ABC31427.1| DNA ligase, NAD-dependent [Hahella chejuensis KCTC 2396]
Length = 683
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 28/63 (44%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
E+ L + H YY LD+P D YDR+ RL ++ +FP+ D P
Sbjct: 5 PAAIQEELNTLRETINDHNYRYYTLDDPSIPDAEYDRLMRRLREIEAEFPQTITPDSPTQ 64
Query: 116 TVG 118
VG
Sbjct: 65 RVG 67
>gi|225181787|ref|ZP_03735225.1| DNA ligase, NAD-dependent [Dethiobacter alkaliphilus AHT 1]
gi|225167561|gb|EEG76374.1| DNA ligase, NAD-dependent [Dethiobacter alkaliphilus AHT 1]
Length = 667
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + +A+ VE L + H Y+ LD P +D +D + ++L+A++ QFP+L D P
Sbjct: 1 MDRQQALETVEKLRQEIDDHNYRYHVLDEPQISDAEFDDLMQKLEAMEAQFPDLVTPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|82913524|ref|XP_728678.1| NAD-dependent DNA ligase [Plasmodium yoelii yoelii str. 17XNL]
gi|23485151|gb|EAA20243.1| DNA ligase, NAD-dependent, putative [Plasmodium yoelii yoelii]
Length = 354
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 33/63 (52%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
E + + L + H YYRLD+PL TD YDR+ L A++ ++PEL D P
Sbjct: 184 PAEVVEKARKLREEIEFHNVRYYRLDDPLITDAEYDRLMAELLAIEARYPELVTPDSPTQ 243
Query: 116 TVG 118
VG
Sbjct: 244 RVG 246
>gi|296126514|ref|YP_003633766.1| DNA ligase, NAD-dependent [Brachyspira murdochii DSM 12563]
gi|296018330|gb|ADG71567.1| DNA ligase, NAD-dependent [Brachyspira murdochii DSM 12563]
Length = 663
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 38/65 (58%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++K EA +++ L + +H K YY DNP D YD++ L+ L+ +FPEL +D P
Sbjct: 1 MNKEEAKQKIKQLTETINYHNKLYYTDDNPEIEDYEYDKLFRELENLEREFPELKKDDSP 60
Query: 114 WNTVG 118
N VG
Sbjct: 61 TNKVG 65
>gi|326559356|gb|EGE09783.1| NAD-dependent DNA ligase [Moraxella catarrhalis 7169]
Length = 691
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 37/73 (50%)
Query: 46 DKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFP 105
+ +K S + + + ++ L+K+ H YY +D P +D YD + L L++Q P
Sbjct: 10 NTSKNNPSKANDQIIAQMRALIKLLKRHNHAYYVMDAPTISDDEYDGLRRTLMMLEQQHP 69
Query: 106 ELFDEDHPWNTVG 118
L D P NTVG
Sbjct: 70 NLIQPDSPINTVG 82
>gi|94497003|ref|ZP_01303577.1| DNA ligase, NAD-dependent [Sphingomonas sp. SKA58]
gi|94423679|gb|EAT08706.1| DNA ligase, NAD-dependent [Sphingomonas sp. SKA58]
Length = 703
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 30/70 (42%)
Query: 49 KKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF 108
L++ EA + L K H + Y+ D P +D YD + +AL+ FP L
Sbjct: 2 TDPAMLTEAEAANRLMRLAKEVAKHNRLYHDQDAPEISDADYDALIRENNALEAAFPHLI 61
Query: 109 DEDHPWNTVG 118
D P VG
Sbjct: 62 RADSPNAQVG 71
>gi|33597876|ref|NP_885519.1| DNA ligase [Bordetella parapertussis 12822]
gi|81425567|sp|Q7W0T4|DNLJ_BORPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|33574305|emb|CAE38638.1| DNA ligase [Bordetella parapertussis]
Length = 696
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
+ +A + L H YY D+P D YD + L AL+ + PEL D P
Sbjct: 7 TPQQA---IARLRAEIEQHNIRYYVHDDPSVPDAEYDALMRDLQALEAEHPELVTPDSPT 63
Query: 115 NTVG 118
VG
Sbjct: 64 QRVG 67
>gi|300717845|ref|YP_003742648.1| DNA ligase [Erwinia billingiae Eb661]
gi|299063681|emb|CAX60801.1| DNA ligase [Erwinia billingiae Eb661]
Length = 672
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 28/62 (45%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ L HH+ Y+ +D+P D YDR+ L L++ PEL D P
Sbjct: 2 ESVQDKITALQTTLRHHEYQYHVMDDPEVPDAEYDRLMRELRELEQAHPELVTADSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|157371681|ref|YP_001479670.1| NAD-dependent DNA ligase LigA [Serratia proteamaculans 568]
gi|190359284|sp|A8GHF2|DNLJ_SERP5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|157323445|gb|ABV42542.1| DNA ligase, NAD-dependent [Serratia proteamaculans 568]
Length = 673
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 28/62 (45%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ ++ L HH+ Y+ LD P D YDR+ L AL+ PEL D P
Sbjct: 2 ESIIQQINQLRTSLRHHEYQYHVLDAPEVPDAEYDRLMGELRALESAHPELITADSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|254480787|ref|ZP_05094034.1| DNA ligase, NAD-dependent [marine gamma proteobacterium HTCC2148]
gi|214039370|gb|EEB80030.1| DNA ligase, NAD-dependent [marine gamma proteobacterium HTCC2148]
Length = 677
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 29/65 (44%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ EV L YY LD+P D YDR +L +EQFPEL ED P
Sbjct: 1 MTDSATQAEVLQLRTQLREWNYRYYVLDDPSVPDAEYDRYLRQLQGFEEQFPELVTEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|33602779|ref|NP_890339.1| DNA ligase [Bordetella bronchiseptica RB50]
gi|81429836|sp|Q7WCJ7|DNLJ_BORBR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|33577221|emb|CAE35778.1| DNA ligase [Bordetella bronchiseptica RB50]
Length = 696
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
+ +A + L H YY D+P D YD + L AL+ + PEL D P
Sbjct: 7 TPQQA---IARLRAEIEQHNIRYYVHDDPSVPDAEYDALMRDLQALEAEHPELVTPDSPT 63
Query: 115 NTVG 118
VG
Sbjct: 64 QRVG 67
>gi|307297347|ref|ZP_07577153.1| DNA ligase, NAD-dependent [Thermotogales bacterium mesG1.Ag.4.2]
gi|306916607|gb|EFN46989.1| DNA ligase, NAD-dependent [Thermotogales bacterium mesG1.Ag.4.2]
Length = 665
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 33/65 (50%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ EA ++ L K +H YY LD+P D YD + L L+EQ+PEL D P
Sbjct: 2 ITFEEARKRIDELRKEIDYHAYRYYVLDDPEIPDSEYDNLLRTLIDLEEQYPELKTPDSP 61
Query: 114 WNTVG 118
VG
Sbjct: 62 SIRVG 66
>gi|294085891|ref|YP_003552651.1| DNA ligase (NAD+) [Candidatus Puniceispirillum marinum IMCC1322]
gi|292665466|gb|ADE40567.1| DNA ligase (NAD+) [Candidatus Puniceispirillum marinum IMCC1322]
Length = 696
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 35/70 (50%)
Query: 49 KKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF 108
+ +S +A E+ YL + +H + Y+ D P +D YD + R +AL+ FPEL
Sbjct: 6 PDPSKMSADDAAQELAYLAERIAYHDRKYHGEDAPDISDADYDMLVARNNALEASFPELI 65
Query: 109 DEDHPWNTVG 118
D P VG
Sbjct: 66 RPDSPSQRVG 75
>gi|317049042|ref|YP_004116690.1| DNA ligase, NAD-dependent [Pantoea sp. At-9b]
gi|316950659|gb|ADU70134.1| DNA ligase, NAD-dependent [Pantoea sp. At-9b]
Length = 672
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 27/60 (45%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L HH+ Y+ +D P D YDR+ +L L+ PEL D P VG
Sbjct: 4 VQEQITALRTTLRHHEYLYHVMDTPEVPDAEYDRLMAQLRELESAHPELVTPDSPTQRVG 63
>gi|84516174|ref|ZP_01003534.1| DNA ligase [Loktanella vestfoldensis SKA53]
gi|84509870|gb|EAQ06327.1| DNA ligase [Loktanella vestfoldensis SKA53]
Length = 722
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V L++ EAM+E+ L + Y+R D P +D YD + +R A++ +F EL
Sbjct: 24 VADLTRAEAMVELARLAQTLAQANTAYHRNDTPEISDAAYDALKQRNAAIEARFRELKRA 83
Query: 111 DHPWNTVG 118
D P + VG
Sbjct: 84 DSPSDQVG 91
>gi|33594429|ref|NP_882073.1| DNA ligase [Bordetella pertussis Tohama I]
gi|81424006|sp|Q7VRX7|DNLJ_BORPE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|33564504|emb|CAE43819.1| DNA ligase [Bordetella pertussis Tohama I]
gi|332383840|gb|AEE68687.1| DNA ligase [Bordetella pertussis CS]
Length = 696
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
+ +A + L H YY D+P D YD + L AL+ + PEL D P
Sbjct: 7 TPQQA---IARLRAEIEQHNIRYYVHDDPSVPDAEYDALMRDLQALEAEHPELVTPDSPT 63
Query: 115 NTVG 118
VG
Sbjct: 64 QRVG 67
>gi|56479083|ref|YP_160672.1| NAD-dependent DNA ligase [Aromatoleum aromaticum EbN1]
gi|81356392|sp|Q5NYU3|DNLJ_AZOSE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|56315126|emb|CAI09771.1| NAD-dependent DNA ligase [Aromatoleum aromaticum EbN1]
Length = 681
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 27/61 (44%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E L + H YY LD P D YDR+ LDAL+ + PEL D P V
Sbjct: 6 EDFERAAQLRRELEAHDHAYYVLDAPTVPDAEYDRLFRELDALERRHPELLVPDSPTRRV 65
Query: 118 G 118
G
Sbjct: 66 G 66
>gi|225620892|ref|YP_002722150.1| NAD-dependent DNA ligase LigA [Brachyspira hyodysenteriae WA1]
gi|254781267|sp|C0QVE5|DNLJ_BRAHW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|225215712|gb|ACN84446.1| NAD-dependent DNA ligase LigA [Brachyspira hyodysenteriae WA1]
Length = 663
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 36/65 (55%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ EA +E L + +H K YY DNP D YD++ L+ L+ +FPEL +D P
Sbjct: 1 MNIEEAKQRIEQLTETINYHNKLYYTDDNPEIEDYEYDKLFRELENLEREFPELKKDDSP 60
Query: 114 WNTVG 118
N VG
Sbjct: 61 TNKVG 65
>gi|253689765|ref|YP_003018955.1| DNA ligase, NAD-dependent [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251756343|gb|ACT14419.1| DNA ligase, NAD-dependent [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 681
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 29/60 (48%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ V L ++ HH+ Y+ D P D YD++ + L AL+ PEL D P VG
Sbjct: 11 VALRVAELRRVLRHHEYKYHVEDAPEIPDVEYDKLMQELKALEADHPELVTSDSPTQRVG 70
>gi|262373317|ref|ZP_06066596.1| DNA ligase, NAD-dependent [Acinetobacter junii SH205]
gi|262313342|gb|EEY94427.1| DNA ligase, NAD-dependent [Acinetobacter junii SH205]
Length = 677
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 35/65 (53%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + + ++ L+++ H YY +D P TD YD + +L AL++Q+PE D P
Sbjct: 1 MEQNSVIEQMRQLIQLIAKHNHAYYVMDQPTITDSEYDHLFHQLKALEQQYPEFMQADTP 60
Query: 114 WNTVG 118
N VG
Sbjct: 61 TNKVG 65
>gi|226953496|ref|ZP_03823960.1| DNA ligase [Acinetobacter sp. ATCC 27244]
gi|226835781|gb|EEH68164.1| DNA ligase [Acinetobacter sp. ATCC 27244]
Length = 675
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 34/65 (52%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + ++ L+++ H YY +D P +D YD + +L AL++Q+PE D P
Sbjct: 1 MEHNSVIEQMRQLIQLIAKHNHAYYVMDQPSISDSEYDHLFHQLKALEQQYPECIQADTP 60
Query: 114 WNTVG 118
N VG
Sbjct: 61 TNKVG 65
>gi|50122504|ref|YP_051671.1| NAD-dependent DNA ligase LigA [Pectobacterium atrosepticum
SCRI1043]
gi|81644069|sp|Q6D165|DNLJ_ERWCT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|49613030|emb|CAG76481.1| DNA ligase [Pectobacterium atrosepticum SCRI1043]
Length = 681
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 29/60 (48%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ V L ++ HH+ Y+ D P D YD++ + L AL+ PEL D P VG
Sbjct: 4 VALRVAELRRVLRHHEYKYHVEDAPEIPDIEYDKLMQELKALEADHPELVTSDSPTQRVG 63
>gi|114319842|ref|YP_741525.1| DNA ligase, NAD-dependent [Alkalilimnicola ehrlichii MLHE-1]
gi|122312282|sp|Q0AAV2|DNLJ_ALHEH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|114226236|gb|ABI56035.1| DNA ligase, NAD-dependent [Alkalilimnicola ehrlichii MLHE-1]
Length = 673
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 26/58 (44%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+E L + H YY LD P+ D YD + L AL+ + PEL D P V
Sbjct: 9 QARIEALRREIREHDHRYYVLDAPVIADAEYDALMAELQALEAEHPELITPDSPSQRV 66
>gi|302037359|ref|YP_003797681.1| DNA ligase (NAD(+)) [Candidatus Nitrospira defluvii]
gi|300605423|emb|CBK41756.1| DNA ligase (NAD(+)) [Candidatus Nitrospira defluvii]
Length = 675
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 27/65 (41%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ A + L + HH YY D P +D YDR+ L L+ P+L D P
Sbjct: 6 MPHQTAEQRIADLRRQIRHHDHLYYTKDRPEISDAEYDRLFRELVDLETAHPDLVTGDSP 65
Query: 114 WNTVG 118
VG
Sbjct: 66 TQRVG 70
>gi|294649516|ref|ZP_06726937.1| NAD-dependent DNA ligase LigA [Acinetobacter haemolyticus ATCC
19194]
gi|292824577|gb|EFF83359.1| NAD-dependent DNA ligase LigA [Acinetobacter haemolyticus ATCC
19194]
Length = 675
Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 34/65 (52%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + ++ L+++ H YY +D P +D YD + +L AL++Q+PE D P
Sbjct: 1 MEHNSVIEQMRQLIQLIAKHNHAYYVMDQPSISDSEYDHLFHQLKALEQQYPECIQADTP 60
Query: 114 WNTVG 118
N VG
Sbjct: 61 TNKVG 65
>gi|326562480|gb|EGE12798.1| NAD-dependent DNA ligase [Moraxella catarrhalis 46P47B1]
gi|326567201|gb|EGE17321.1| NAD-dependent DNA ligase [Moraxella catarrhalis 12P80B1]
gi|326568292|gb|EGE18374.1| NAD-dependent DNA ligase [Moraxella catarrhalis BC8]
Length = 691
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 38/73 (52%)
Query: 46 DKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFP 105
+ +K S + + + ++ L+K+ H YY +D P +DG YD + L L++Q P
Sbjct: 10 NTSKNNPSKANDQIIAQMCALIKLLKRHNHAYYVMDAPTISDGEYDGLRRTLMMLEQQHP 69
Query: 106 ELFDEDHPWNTVG 118
L D P NTVG
Sbjct: 70 NLIQPDSPINTVG 82
>gi|294011619|ref|YP_003545079.1| NAD-dependent DNA ligase [Sphingobium japonicum UT26S]
gi|292674949|dbj|BAI96467.1| NAD-dependent DNA ligase [Sphingobium japonicum UT26S]
Length = 711
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 33/70 (47%)
Query: 49 KKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF 108
+TS+++ EA + L + H + Y+ D P TD YD + +AL+ FP L
Sbjct: 2 TDLTSMTEAEAANHLMRLAREIARHNRLYHDQDQPEITDAAYDALIRENNALEAAFPHLV 61
Query: 109 DEDHPWNTVG 118
D P VG
Sbjct: 62 RSDSPNAQVG 71
>gi|111225216|ref|YP_716010.1| DNA ligase [Frankia alni ACN14a]
gi|122953782|sp|Q0RDH8|DNLJ_FRAAA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|111152748|emb|CAJ64491.1| DNA ligase [Frankia alni ACN14a]
Length = 771
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 26/58 (44%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
L + H YY LD+P +D YDR+ L AL+E PEL D P V
Sbjct: 60 RARAAELARELDEHAYRYYVLDSPTVSDAEYDRLMRELTALEEHHPELRTPDSPTQKV 117
>gi|163856016|ref|YP_001630314.1| DNA ligase [Bordetella petrii DSM 12804]
gi|254781264|sp|A9II69|DNLJ_BORPD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|163259744|emb|CAP42045.1| DNA ligase [Bordetella petrii]
Length = 697
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 26/62 (41%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
G+A V L H YY D+P +D YD + L L+ PEL + P
Sbjct: 6 GQAAQRVAALRNEIEQHNVRYYVHDDPSVSDAEYDALMRELIQLETDHPELVTPESPTQR 65
Query: 117 VG 118
VG
Sbjct: 66 VG 67
>gi|317132010|ref|YP_004091324.1| DNA ligase, NAD-dependent [Ethanoligenens harbinense YUAN-3]
gi|315469989|gb|ADU26593.1| DNA ligase, NAD-dependent [Ethanoligenens harbinense YUAN-3]
Length = 661
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 27/61 (44%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+A + L K H YY LD P D YDR+ L+ L+ PE+ D P V
Sbjct: 2 DAAARAKELRKALSRHNYLYYVLDAPEIEDFEYDRMLRELEELEAAHPEIVTPDSPTQRV 61
Query: 118 G 118
G
Sbjct: 62 G 62
>gi|271501855|ref|YP_003334881.1| DNA ligase [Dickeya dadantii Ech586]
gi|270345410|gb|ACZ78175.1| DNA ligase, NAD-dependent [Dickeya dadantii Ech586]
Length = 683
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 26/62 (41%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+VE L +H+ Y+ D P D YD + L L++ PEL D P
Sbjct: 13 AAVAAQVEALRAQLRYHEYKYHVEDAPEIPDAEYDTLMNTLKVLEQAHPELVTPDSPTQR 72
Query: 117 VG 118
VG
Sbjct: 73 VG 74
>gi|253999028|ref|YP_003051091.1| DNA ligase, NAD-dependent [Methylovorus sp. SIP3-4]
gi|253985707|gb|ACT50564.1| DNA ligase, NAD-dependent [Methylovorus sp. SIP3-4]
Length = 699
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 31/67 (46%)
Query: 52 TSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
+++ +++ L + + YY LD+P D YDR+ L AL+ PEL D
Sbjct: 17 ATVTFATPEVQIRQLREQINLYNYQYYVLDDPSVPDSEYDRLFRELQALEHAHPELLTPD 76
Query: 112 HPWNTVG 118
P VG
Sbjct: 77 SPTQRVG 83
>gi|258592875|emb|CBE69184.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [NC10
bacterium 'Dutch sediment']
Length = 684
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 31/59 (52%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+V+ L ++ H+ YY LD P TD +D + +RL L+ Q PEL D P VG
Sbjct: 8 RAQVDDLRQLIRRHEYLYYVLDRPEITDAEFDTLYQRLQTLETQHPELITPDSPTQRVG 66
>gi|288958932|ref|YP_003449273.1| DNA ligase (NAD+) [Azospirillum sp. B510]
gi|288911240|dbj|BAI72729.1| DNA ligase (NAD+) [Azospirillum sp. B510]
Length = 788
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 37/72 (51%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
++ V +L+ +A ++ L HH + Y++ D P TD YD + R A++ +FPE
Sbjct: 12 RSIAVDALTPEQAAADLAALAAEIAHHDRLYHQQDQPEITDADYDALVRRNLAIEARFPE 71
Query: 107 LFDEDHPWNTVG 118
L D P VG
Sbjct: 72 LRRADSPSLRVG 83
>gi|183981708|ref|YP_001849999.1| NAD-dependent DNA ligase LigA [Mycobacterium marinum M]
gi|254781377|sp|B2HIF0|DNLJ_MYCMM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|183175034|gb|ACC40144.1| DNA ligase [NAD dependent] LigA [Mycobacterium marinum M]
Length = 687
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 34/61 (55%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E + + + L + HQ YY D P+ TD +D + RL+AL+EQ+PEL D P V
Sbjct: 4 EVLRQWQELAEQVREHQFRYYVRDAPVITDAEFDELLRRLEALEEQYPELRTPDSPTQLV 63
Query: 118 G 118
G
Sbjct: 64 G 64
>gi|220931078|ref|YP_002507986.1| DNA ligase, NAD-dependent [Halothermothrix orenii H 168]
gi|254781343|sp|B8D122|DNLJ_HALOH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|219992388|gb|ACL68991.1| DNA ligase, NAD-dependent [Halothermothrix orenii H 168]
Length = 670
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 32/62 (51%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ E+ L + +H+ YY LD+P +D +D + +RL L+E+ P L D P
Sbjct: 3 SKVEQEIRDLREKIRYHEYRYYVLDDPEISDAEFDELIQRLIDLEEKHPGLVTPDSPTQR 62
Query: 117 VG 118
VG
Sbjct: 63 VG 64
>gi|330963250|gb|EGH63510.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. actinidiae
str. M302091]
Length = 787
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 25/60 (41%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
A + L H Y+ LD P D YDR+ L AL+ + P L D P VG
Sbjct: 4 AETRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAENPHLVTPDSPTQRVG 63
>gi|330879146|gb|EGH13295.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
Length = 787
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 25/60 (41%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
A + L H Y+ LD P D YDR+ L AL+ + P L D P VG
Sbjct: 4 AETRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAENPHLVTPDSPTQRVG 63
>gi|28870811|ref|NP_793430.1| NAD-dependent DNA ligase [Pseudomonas syringae pv. tomato str.
DC3000]
gi|81730313|sp|Q87YY6|DNLJ_PSESM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|28854060|gb|AAO57125.1| DNA ligase, NAD-dependent [Pseudomonas syringae pv. tomato str.
DC3000]
Length = 787
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 25/60 (41%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
A + L H Y+ LD P D YDR+ L AL+ + P L D P VG
Sbjct: 4 AETRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAENPHLVTPDSPTQRVG 63
>gi|327480472|gb|AEA83782.1| NAD-dependent DNA ligase LigA [Pseudomonas stutzeri DSM 4166]
Length = 791
Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 27/64 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S A + L H YY LD P D YDR+ L AL+ + PEL + P
Sbjct: 3 SAQTAAERIAELRSEIDAHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPELVTPESPT 62
Query: 115 NTVG 118
VG
Sbjct: 63 QRVG 66
>gi|166216289|sp|A4VKN0|DNLJ_PSEU5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
Length = 788
Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 27/64 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S A + L H YY LD P D YDR+ L AL+ + PEL + P
Sbjct: 3 SAQTAAERIAELRSEIDAHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPELVTPESPT 62
Query: 115 NTVG 118
VG
Sbjct: 63 QRVG 66
>gi|331015921|gb|EGH95977.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. lachrymans
str. M302278PT]
Length = 787
Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 25/60 (41%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
A + L H Y+ LD P D YDR+ L AL+ + P L D P VG
Sbjct: 4 AETRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAENPHLVTPDSPTQRVG 63
>gi|213968905|ref|ZP_03397045.1| DNA ligase, NAD-dependent [Pseudomonas syringae pv. tomato T1]
gi|301385372|ref|ZP_07233790.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. tomato
Max13]
gi|302063632|ref|ZP_07255173.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. tomato K40]
gi|302133897|ref|ZP_07259887.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|213926204|gb|EEB59759.1| DNA ligase, NAD-dependent [Pseudomonas syringae pv. tomato T1]
Length = 787
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 25/60 (41%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
A + L H Y+ LD P D YDR+ L AL+ + P L D P VG
Sbjct: 4 AETRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAENPHLVTPDSPTQRVG 63
>gi|212638096|ref|YP_002314616.1| NAD-dependent DNA ligase LigA [Anoxybacillus flavithermus WK1]
gi|254781544|sp|B7GFV1|DNLJ_ANOFW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|212559576|gb|ACJ32631.1| NAD-dependent DNA ligase [Anoxybacillus flavithermus WK1]
Length = 672
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 34/68 (50%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
+ ++++ + ++ L + H YY LD P +D YD + +L L+EQ+P+
Sbjct: 1 MKNVAQHDVEKQIAELREQIEKHNYAYYVLDQPSISDAEYDELMRKLMELEEQYPQYKTP 60
Query: 111 DHPWNTVG 118
D P VG
Sbjct: 61 DSPSQRVG 68
>gi|320540519|ref|ZP_08040169.1| DNA ligase, NAD(+)-dependent [Serratia symbiotica str. Tucson]
gi|320029450|gb|EFW11479.1| DNA ligase, NAD(+)-dependent [Serratia symbiotica str. Tucson]
Length = 685
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 26/58 (44%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L HH+ Y+ LD P D YDR+ L L+ PEL D P VG
Sbjct: 6 EQINQLRASLRHHEYQYHVLDAPEVPDAEYDRLMCELRELESAHPELITADSPTQRVG 63
>gi|94971682|ref|YP_593730.1| DNA ligase, NAD-dependent [Candidatus Koribacter versatilis
Ellin345]
gi|122986011|sp|Q1IHJ4|DNLJ_ACIBL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|94553732|gb|ABF43656.1| DNA ligase, NAD-dependent [Candidatus Koribacter versatilis
Ellin345]
Length = 673
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
+K A + E L + +H+ YY LD+P +D YD + L AL+ + PEL D P
Sbjct: 4 TKDPAK-QAEDLREKLRYHEHRYYVLDDPEISDADYDVMMNELKALEAKHPELLTPDSPT 62
Query: 115 NTVG 118
VG
Sbjct: 63 QRVG 66
>gi|121602535|ref|YP_989218.1| NAD-dependent DNA ligase LigA [Bartonella bacilliformis KC583]
gi|166215397|sp|A1UTB5|DNLJ_BARBK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|120614712|gb|ABM45313.1| DNA ligase, NAD-dependent [Bartonella bacilliformis KC583]
Length = 717
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 32/70 (45%)
Query: 49 KKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF 108
K +L+ EA E+E+L K H Y D P +D YD + R ++ FPEL
Sbjct: 3 KDAKNLTALEAERELEWLAKEIARHDVLYNNHDQPEISDARYDALRRRNIEIETLFPELV 62
Query: 109 DEDHPWNTVG 118
D P VG
Sbjct: 63 RADSPSYKVG 72
>gi|299771367|ref|YP_003733393.1| DNA ligase, NAD-dependent [Acinetobacter sp. DR1]
gi|298701455|gb|ADI92020.1| DNA ligase, NAD-dependent [Acinetobacter sp. DR1]
Length = 679
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 34/65 (52%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ + ++ L+++ H YY +D P +D YD + +L AL+EQ+P+ D P
Sbjct: 1 MATTSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPDQVQSDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TTKVG 65
>gi|108759370|ref|YP_633776.1| NAD-dependent DNA ligase [Myxococcus xanthus DK 1622]
gi|123074067|sp|Q1D0P7|DNLJ_MYXXD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|108463250|gb|ABF88435.1| DNA ligase, NAD-dependent [Myxococcus xanthus DK 1622]
Length = 672
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 28/64 (43%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
+A L + HH YY LD+P +D YD++ L L+ + P L D P
Sbjct: 3 DFQKAAARARELHRELAHHNYRYYVLDSPEVSDAQYDKLMRELQDLEAKHPSLQTPDSPT 62
Query: 115 NTVG 118
VG
Sbjct: 63 QRVG 66
>gi|146282220|ref|YP_001172373.1| NAD-dependent DNA ligase LigA [Pseudomonas stutzeri A1501]
gi|145570425|gb|ABP79531.1| DNA ligase, NAD-dependent [Pseudomonas stutzeri A1501]
Length = 802
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 27/64 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S A + L H YY LD P D YDR+ L AL+ + PEL + P
Sbjct: 17 SAQTAAERIAELRSEIDAHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPELVTPESPT 76
Query: 115 NTVG 118
VG
Sbjct: 77 QRVG 80
>gi|292491548|ref|YP_003526987.1| DNA ligase, NAD-dependent [Nitrosococcus halophilus Nc4]
gi|291580143|gb|ADE14600.1| DNA ligase, NAD-dependent [Nitrosococcus halophilus Nc4]
Length = 675
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 32/62 (51%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+A VE L K+ + YY LD+P+ D YDR+ L L+ Q+PEL D P
Sbjct: 5 AQARERVETLRKLINDYNYNYYVLDSPVVPDSEYDRLMRELQNLEAQYPELVVPDSPTQR 64
Query: 117 VG 118
VG
Sbjct: 65 VG 66
>gi|162148970|ref|YP_001603431.1| DNA ligase [Gluconacetobacter diazotrophicus PAl 5]
gi|190359260|sp|A9H0L6|DNLJ_GLUDA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|161787547|emb|CAP57143.1| putative DNA ligase [Gluconacetobacter diazotrophicus PAl 5]
Length = 695
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
+ L++ +AM+E+E L + + YY D P TD YD + +R A++ +FP+L
Sbjct: 2 DPSELTEPQAMVELERLAQQIRALDRAYYEDDAPTVTDAEYDALRQRNLAIEARFPDLRR 61
Query: 110 EDHPWNTV 117
D P V
Sbjct: 62 ADSPSLHV 69
>gi|307293327|ref|ZP_07573173.1| DNA ligase, NAD-dependent [Sphingobium chlorophenolicum L-1]
gi|306881393|gb|EFN12609.1| DNA ligase, NAD-dependent [Sphingobium chlorophenolicum L-1]
Length = 711
Score = 104 bits (259), Expect = 6e-21, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 31/70 (44%)
Query: 49 KKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF 108
T +++ EA + L + H + Y+ D P TD YD + +AL+ FP L
Sbjct: 2 TDPTPMTEAEAANRLMRLAREIARHNRLYHDQDQPEITDAAYDALIRENNALEAAFPHLI 61
Query: 109 DEDHPWNTVG 118
D P VG
Sbjct: 62 RSDSPNAQVG 71
>gi|260426307|ref|ZP_05780286.1| DNA ligase, NAD-dependent [Citreicella sp. SE45]
gi|260420799|gb|EEX14050.1| DNA ligase, NAD-dependent [Citreicella sp. SE45]
Length = 754
Score = 104 bits (259), Expect = 6e-21, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 38/69 (55%)
Query: 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
+V +L++ +A E+ L ++ + Y+ D P +D YD + R A++E+FPEL
Sbjct: 10 EVEALTETQARDELARLAEVLAQANRAYHTEDAPEISDADYDALKLRNIAIEERFPELKR 69
Query: 110 EDHPWNTVG 118
ED P VG
Sbjct: 70 EDSPSEQVG 78
>gi|83942325|ref|ZP_00954786.1| DNA ligase, NAD-dependent [Sulfitobacter sp. EE-36]
gi|83846418|gb|EAP84294.1| DNA ligase, NAD-dependent [Sulfitobacter sp. EE-36]
Length = 706
Score = 104 bits (259), Expect = 6e-21, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 35/74 (47%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
+ + LS+ EA E+ L + Y+ D P +D YDR+ R A++E+F
Sbjct: 1 MTDKTALQELSEEEAKAELARLADLLGRANTAYHTQDAPDLSDAEYDRLKRRNQAIEERF 60
Query: 105 PELFDEDHPWNTVG 118
P L D P + VG
Sbjct: 61 PGLKRADSPSDKVG 74
>gi|294631529|ref|ZP_06710089.1| DNA ligase, NAD-dependent [Streptomyces sp. e14]
gi|292834862|gb|EFF93211.1| DNA ligase, NAD-dependent [Streptomyces sp. e14]
Length = 732
Score = 104 bits (259), Expect = 6e-21, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 32/62 (51%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
EA E L + H+ YY D P+ +D +DR+ L+AL+E++PEL D P
Sbjct: 2 PAEAREEHARLAEQVEEHRFRYYVKDAPVISDADFDRLLRSLEALEERYPELRTPDSPTQ 61
Query: 116 TV 117
V
Sbjct: 62 KV 63
>gi|262379150|ref|ZP_06072306.1| DNA ligase, NAD-dependent [Acinetobacter radioresistens SH164]
gi|262298607|gb|EEY86520.1| DNA ligase, NAD-dependent [Acinetobacter radioresistens SH164]
Length = 682
Score = 104 bits (259), Expect = 6e-21, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S + ++ L+++ H YY +D P +D YD + +L AL+EQ+P+L D P
Sbjct: 7 STAGIVTQMRQLIQLIAQHNHAYYVMDQPSISDNEYDSLFHQLKALEEQYPDLVQNDTPT 66
Query: 115 NTVG 118
VG
Sbjct: 67 RRVG 70
>gi|157961514|ref|YP_001501548.1| DNA ligase, NAD-dependent [Shewanella pealeana ATCC 700345]
gi|190359287|sp|A8H376|DNLJ_SHEPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|157846514|gb|ABV87013.1| DNA ligase, NAD-dependent [Shewanella pealeana ATCC 700345]
Length = 668
Score = 104 bits (259), Expect = 6e-21, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 26/60 (43%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E+ L H YY D+P D YDR+ RL AL+ + PE D P VG
Sbjct: 4 IQNEIAQLTAELNQHNYRYYVDDSPSIPDAEYDRLLNRLKALETEHPEFCRPDSPTQRVG 63
>gi|239825842|ref|YP_002948466.1| NAD-dependent DNA ligase LigA [Geobacillus sp. WCH70]
gi|239806135|gb|ACS23200.1| DNA ligase, NAD-dependent [Geobacillus sp. WCH70]
Length = 670
Score = 103 bits (258), Expect = 6e-21, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 36/65 (55%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + AM +E L ++ + YY LD P D YDR+ + L AL+EQ+P+L +D P
Sbjct: 1 MDRQAAMKRIEELRELLNKYNYEYYVLDRPSVPDAEYDRLMQELIALEEQYPDLKTKDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SQRVG 65
>gi|149915267|ref|ZP_01903795.1| DNA ligase, NAD-dependent [Roseobacter sp. AzwK-3b]
gi|149810988|gb|EDM70827.1| DNA ligase, NAD-dependent [Roseobacter sp. AzwK-3b]
Length = 720
Score = 103 bits (258), Expect = 6e-21, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 36/71 (50%)
Query: 49 KKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF 108
+ V LS +A E+ L + Y+ D P+ +D YD + +R A++ +FP+L
Sbjct: 16 RPVDKLSADQAAQELARLADLVAQADAAYHGQDAPIMSDAAYDALVQRNAAIEARFPDLM 75
Query: 109 DEDHPWNTVGY 119
ED P VG+
Sbjct: 76 REDSPSRRVGF 86
>gi|255318624|ref|ZP_05359855.1| DNA ligase, NAD-dependent [Acinetobacter radioresistens SK82]
gi|255304306|gb|EET83492.1| DNA ligase, NAD-dependent [Acinetobacter radioresistens SK82]
Length = 678
Score = 103 bits (258), Expect = 6e-21, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S + ++ L+++ H YY +D P +D YD + +L AL+EQ+P+L D P
Sbjct: 3 STAGIVTQMRQLIQLIAQHNHAYYVMDQPSISDNEYDSLFHQLKALEEQYPDLVQNDTPT 62
Query: 115 NTVG 118
VG
Sbjct: 63 RRVG 66
>gi|325982988|ref|YP_004295390.1| DNA ligase, NAD-dependent [Nitrosomonas sp. AL212]
gi|325532507|gb|ADZ27228.1| DNA ligase, NAD-dependent [Nitrosomonas sp. AL212]
Length = 677
Score = 103 bits (258), Expect = 6e-21, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ ++ L H YY LD P D YDR+ L +++ +P+L D P
Sbjct: 6 EKIRHRIQDLRAEIELHNYRYYVLDTPTIPDAEYDRLLRELQHIEQDYPQLITADSPTQR 65
Query: 117 VG 118
VG
Sbjct: 66 VG 67
>gi|209545276|ref|YP_002277505.1| NAD-dependent DNA ligase [Gluconacetobacter diazotrophicus PAl 5]
gi|209532953|gb|ACI52890.1| DNA ligase, NAD-dependent [Gluconacetobacter diazotrophicus PAl 5]
Length = 708
Score = 103 bits (258), Expect = 6e-21, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
+ L++ +AM+E+E L + + YY D P TD YD + +R A++ +FP+L
Sbjct: 15 DPSELTEPQAMVELERLAQQIRALDRAYYEDDAPTVTDAEYDALRQRNLAIEARFPDLRR 74
Query: 110 EDHPWNTV 117
D P V
Sbjct: 75 ADSPSLHV 82
>gi|89900985|ref|YP_523456.1| DNA ligase [Rhodoferax ferrireducens T118]
gi|123397178|sp|Q21WC8|DNLJ_RHOFD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|89345722|gb|ABD69925.1| DNA ligase, NAD-dependent [Rhodoferax ferrireducens T118]
Length = 690
Score = 103 bits (258), Expect = 6e-21, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 26/56 (46%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
V L + H YY D P D YDR+ + L A++ Q PEL D P VG
Sbjct: 19 VAQLRRALHEHAHHYYVEDAPTIPDAEYDRMFQELQAIEAQHPELITPDSPTQRVG 74
>gi|260912664|ref|ZP_05919150.1| DNA ligase [Pasteurella dagmatis ATCC 43325]
gi|260633042|gb|EEX51207.1| DNA ligase [Pasteurella dagmatis ATCC 43325]
Length = 673
Score = 103 bits (258), Expect = 7e-21, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 31/57 (54%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E+E L K ++ Y+ LDNP D YDR+ +L L+ ++P+ ED P VG
Sbjct: 8 EMEQLRKTLRRYEYQYHVLDNPTVPDAEYDRLFHQLKKLEREYPQFITEDSPTQRVG 64
>gi|158521726|ref|YP_001529596.1| DNA ligase, NAD-dependent [Desulfococcus oleovorans Hxd3]
gi|254781314|sp|A9A0L9|DNLJ_DESOH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|158510552|gb|ABW67519.1| DNA ligase, NAD-dependent [Desulfococcus oleovorans Hxd3]
Length = 682
Score = 103 bits (258), Expect = 7e-21, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 29/66 (43%)
Query: 53 SLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDH 112
+L K EA V +L H YY D P +D YDR+ L L+ P+L D
Sbjct: 4 TLDKSEAKERVTFLRNELHRHNHLYYIKDAPEISDAEYDRLFRELAELEALHPDLADPAS 63
Query: 113 PWNTVG 118
P VG
Sbjct: 64 PTARVG 69
>gi|225873424|ref|YP_002754883.1| DNA ligase, NAD-dependent [Acidobacterium capsulatum ATCC 51196]
gi|254781243|sp|C1F7S7|DNLJ_ACIC5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|225792636|gb|ACO32726.1| DNA ligase, NAD-dependent [Acidobacterium capsulatum ATCC 51196]
Length = 677
Score = 103 bits (258), Expect = 7e-21, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+S A ++E L + HH+ YY D P D +D + +L L+ + PEL D P
Sbjct: 1 MSHASAAQQIESLRESIRHHEYLYYVQDQPEIDDLAFDELMRKLQRLEAEHPELITPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|320160951|ref|YP_004174175.1| DNA ligase [Anaerolinea thermophila UNI-1]
gi|319994804|dbj|BAJ63575.1| DNA ligase [Anaerolinea thermophila UNI-1]
Length = 674
Score = 103 bits (258), Expect = 7e-21, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 32/65 (49%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+S+ E E L K +H YY LD+P+ +D YDR+ RL ++ PE D P
Sbjct: 1 MSQDPLYQEYENLKKQIHYHDYRYYVLDDPVISDAEYDRLILRLKQIEFAHPEWITPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SQRVG 65
>gi|83953544|ref|ZP_00962265.1| DNA ligase, NAD-dependent [Sulfitobacter sp. NAS-14.1]
gi|83841489|gb|EAP80658.1| DNA ligase, NAD-dependent [Sulfitobacter sp. NAS-14.1]
Length = 706
Score = 103 bits (258), Expect = 7e-21, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 35/74 (47%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
+ + LS+ EA E+ L + Y+ D P +D YDR+ R A++E+F
Sbjct: 1 MTDKTALQELSEEEAKAELARLADLLGRANAAYHTQDAPDLSDAEYDRLKRRNQAIEERF 60
Query: 105 PELFDEDHPWNTVG 118
P L D P + VG
Sbjct: 61 PRLKRADSPSDKVG 74
>gi|313679715|ref|YP_004057454.1| DNA ligase, nad-dependent [Oceanithermus profundus DSM 14977]
gi|313152430|gb|ADR36281.1| DNA ligase, NAD-dependent [Oceanithermus profundus DSM 14977]
Length = 670
Score = 103 bits (258), Expect = 7e-21, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 29/65 (44%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+++ EA V L H YY LD P +D YD + L L+ FPEL P
Sbjct: 1 MTREEAARRVAELTWAIRRHNHLYYVLDRPEISDAEYDALVRELAELEAAFPELRSPASP 60
Query: 114 WNTVG 118
N VG
Sbjct: 61 TNQVG 65
>gi|319408814|emb|CBI82471.1| DNA ligase [Bartonella schoenbuchensis R1]
Length = 718
Score = 103 bits (258), Expect = 7e-21, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 32/72 (44%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
V +L+ EA E+E+L K H Y D P +D YD + R ++ FPE
Sbjct: 2 DKNAVKNLTALEAASELEWLAKEIARHDVLYNNNDQPEISDAQYDALRRRNTEIEALFPE 61
Query: 107 LFDEDHPWNTVG 118
L D P +G
Sbjct: 62 LIRTDSPSYKIG 73
>gi|269138493|ref|YP_003295193.1| NAD-dependent DNA ligase [Edwardsiella tarda EIB202]
gi|267984153|gb|ACY83982.1| NAD-dependent DNA ligase [Edwardsiella tarda EIB202]
gi|304558517|gb|ADM41181.1| DNA ligase [Edwardsiella tarda FL6-60]
Length = 675
Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 29/60 (48%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++E L HH+ YY LD P TD YDR+ +L L+ + P L D P VG
Sbjct: 5 IEQQLEQLRDALRHHEYQYYVLDEPQVTDAEYDRLMAQLKQLEAEHPALVTADSPSQRVG 64
>gi|300870442|ref|YP_003785313.1| NAD-dependent DNA ligase [Brachyspira pilosicoli 95/1000]
gi|300688141|gb|ADK30812.1| NAD-dependent DNA ligase [Brachyspira pilosicoli 95/1000]
Length = 663
Score = 103 bits (257), Expect = 8e-21, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 36/65 (55%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ EA ++E L +H K YY DNP D YD++ L+ L+ +FPEL +D P
Sbjct: 1 MNLEEARKKIEQLTATINYHNKLYYTDDNPEIEDYEYDKLFRELENLEREFPELKKDDSP 60
Query: 114 WNTVG 118
N VG
Sbjct: 61 TNKVG 65
>gi|301155433|emb|CBW14899.1| DNA ligase, NAD(+)-dependent [Haemophilus parainfluenzae T3T1]
Length = 667
Score = 103 bits (257), Expect = 9e-21, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L + ++ Y+ LDNP D YDR+ +L AL+ PEL D P VG
Sbjct: 4 QQQIDTLRQDLRRYEYEYHVLDNPTIPDAEYDRLFHQLKALEAAHPELITADSPTQRVG 62
>gi|283832193|ref|ZP_06351934.1| DNA ligase, NAD-dependent [Citrobacter youngae ATCC 29220]
gi|291071830|gb|EFE09939.1| DNA ligase, NAD-dependent [Citrobacter youngae ATCC 29220]
Length = 671
Score = 103 bits (257), Expect = 9e-21, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 26/62 (41%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ L HH+ Y+ +D P D YD + +L L+ PEL D P
Sbjct: 2 ESIEQQLTELRTTLRHHEYLYHVMDAPEIPDVEYDLLMHKLQWLEALHPELITPDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|269836970|ref|YP_003319198.1| DNA ligase, NAD-dependent [Sphaerobacter thermophilus DSM 20745]
gi|269786233|gb|ACZ38376.1| DNA ligase, NAD-dependent [Sphaerobacter thermophilus DSM 20745]
Length = 680
Score = 103 bits (257), Expect = 9e-21, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 27/65 (41%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + + L K+ + YY LD P +D YD + L L+ PEL D P
Sbjct: 1 MDDVDVQERIAELRKLIERYNYEYYVLDQPSVSDAEYDALMNELRELEAAHPELITPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|262402686|ref|ZP_06079247.1| DNA ligase [Vibrio sp. RC586]
gi|262351468|gb|EEZ00601.1| DNA ligase [Vibrio sp. RC586]
Length = 669
Score = 103 bits (257), Expect = 9e-21, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 24/60 (40%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L + H YY D P D YDR+ L ++ Q PEL D P VG
Sbjct: 4 VEQRLTELRQTLHEHGVRYYVEDAPTIPDAEYDRLMRELLEIEAQHPELITPDSPSLRVG 63
>gi|288919113|ref|ZP_06413452.1| DNA ligase, NAD-dependent [Frankia sp. EUN1f]
gi|288349457|gb|EFC83695.1| DNA ligase, NAD-dependent [Frankia sp. EUN1f]
Length = 715
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 26/72 (36%)
Query: 46 DKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFP 105
D L + H YY LD P D YD + LD +++Q+P
Sbjct: 25 DAGVPEAEAPDAAVRARAAELARDLEEHAHRYYVLDAPTIADAEYDALLRELDQIEQQYP 84
Query: 106 ELFDEDHPWNTV 117
EL D P V
Sbjct: 85 ELRTADSPTQKV 96
>gi|54308062|ref|YP_129082.1| NAD-dependent DNA ligase LigA [Photobacterium profundum SS9]
gi|81615410|sp|Q6LTU5|DNLJ_PHOPR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|46912488|emb|CAG19280.1| putative NAD-dependent DNA ligase [Photobacterium profundum SS9]
Length = 676
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 32/61 (52%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+ +++ L + +H YY DNP D YDR+ ++L AL+ + PEL D P V
Sbjct: 9 DIQQQLDTLREQLAYHGHRYYVEDNPEIPDAEYDRMMQQLLALEAEHPELMSVDSPSQRV 68
Query: 118 G 118
G
Sbjct: 69 G 69
>gi|325576592|ref|ZP_08147310.1| NAD-dependent DNA ligase LigA [Haemophilus parainfluenzae ATCC
33392]
gi|325161155|gb|EGC73270.1| NAD-dependent DNA ligase LigA [Haemophilus parainfluenzae ATCC
33392]
Length = 675
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 48 AKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
+K + ++ + +++ L ++ Y+ LDNP D YDR+ +L AL+ PEL
Sbjct: 2 SKPLENIMSLQ--QQIDTLRHDLRRYEYEYHVLDNPTIPDAEYDRLFHQLKALEAAHPEL 59
Query: 108 FDEDHPWNTVG 118
D P VG
Sbjct: 60 ITADSPTQRVG 70
>gi|313201136|ref|YP_004039794.1| DNA ligase, nad-dependent [Methylovorus sp. MP688]
gi|312440452|gb|ADQ84558.1| DNA ligase, NAD-dependent [Methylovorus sp. MP688]
Length = 689
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 31/67 (46%)
Query: 52 TSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
+++ +++ L + + YY LD+P D YD++ L AL+ PEL D
Sbjct: 7 ATVTSATPEVQIRQLREQINLYNYQYYVLDDPSVPDSEYDKLFRELQALEHAHPELLTPD 66
Query: 112 HPWNTVG 118
P VG
Sbjct: 67 SPTQRVG 73
>gi|183599716|ref|ZP_02961209.1| hypothetical protein PROSTU_03219 [Providencia stuartii ATCC 25827]
gi|188021975|gb|EDU60015.1| hypothetical protein PROSTU_03219 [Providencia stuartii ATCC 25827]
Length = 671
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L + HH+ Y+ LD P D YD++ E L A++ + PE D P VG
Sbjct: 4 KQHLDTLKQQLRHHEYQYHVLDAPEIPDAEYDKLMEELKAIEAEHPEWITSDSPTQRVG 62
>gi|294102358|ref|YP_003554216.1| DNA ligase, NAD-dependent [Aminobacterium colombiense DSM 12261]
gi|293617338|gb|ADE57492.1| DNA ligase, NAD-dependent [Aminobacterium colombiense DSM 12261]
Length = 684
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 33/65 (50%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + EA+ +E L + H YY LD P D YD + L +L+E FPE D D P
Sbjct: 1 MDRREALQRIEALREEINRHAHLYYVLDTPEIADHEYDALFRELASLEEAFPEFDDPDSP 60
Query: 114 WNTVG 118
+ VG
Sbjct: 61 THRVG 65
>gi|90410985|ref|ZP_01218999.1| DNA ligase [Photobacterium profundum 3TCK]
gi|90328198|gb|EAS44509.1| DNA ligase [Photobacterium profundum 3TCK]
Length = 697
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 36/76 (47%)
Query: 43 SWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQE 102
S L K V S + +++ L + +H YY DNP D YDR+ ++L AL+
Sbjct: 15 SILTKTVLVGSEMSTDIQQQLDTLREQLAYHGHRYYVEDNPEIPDAEYDRMMQQLLALEA 74
Query: 103 QFPELFDEDHPWNTVG 118
PEL D P VG
Sbjct: 75 DHPELMSVDSPSQRVG 90
>gi|329889238|ref|ZP_08267581.1| DNA ligase, NAD-dependent [Brevundimonas diminuta ATCC 11568]
gi|328844539|gb|EGF94103.1| DNA ligase, NAD-dependent [Brevundimonas diminuta ATCC 11568]
Length = 774
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 31/73 (42%)
Query: 46 DKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFP 105
D V +L++ +A E++ L H YY P +D YD + R AL+ FP
Sbjct: 3 DLFTPVETLTEAQAREELDRLSAELARHDALYYADAAPEISDADYDELKRRALALEAAFP 62
Query: 106 ELFDEDHPWNTVG 118
L P VG
Sbjct: 63 ALSGPISPSQRVG 75
>gi|11967289|gb|AAG42042.1| NAD-dependent DNA ligase [Aquifex pyrophilus]
Length = 719
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 31 EAKFLPNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLY 90
E + + R L L++ K + LS EA E L ++ H YY +P+ +D Y
Sbjct: 7 ERELIEKTREL---LERIKSLKDLSLEEAKRLAEELKEVIRFHDYKYYVQASPVISDYDY 63
Query: 91 DRVSERLDALQEQFPELFDEDHPWNTV 117
DR+ L ++ +FP+ D P V
Sbjct: 64 DRLFRALKEIERKFPQFITPDSPTQRV 90
>gi|300724062|ref|YP_003713378.1| DNA ligase [Xenorhabdus nematophila ATCC 19061]
gi|297630595|emb|CBJ91260.1| DNA ligase [Xenorhabdus nematophila ATCC 19061]
Length = 658
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 25/49 (51%)
Query: 70 ALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ +D P D YDR+ L AL+EQ PE D P +G
Sbjct: 1 MRHHEYLYHVMDAPEIPDAEYDRLMRELKALEEQHPEWVTADSPTQRIG 49
>gi|89094416|ref|ZP_01167356.1| DNA ligase [Oceanospirillum sp. MED92]
gi|89081308|gb|EAR60540.1| DNA ligase [Oceanospirillum sp. MED92]
Length = 674
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 27/56 (48%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L HH YY LD+P D YDR+ L L+ PEL ED P VG
Sbjct: 7 LQQLRDQLNHHNYQYYVLDDPEVPDAEYDRLFRELKKLESDNPELITEDSPTQRVG 62
>gi|304415222|ref|ZP_07395930.1| DNA ligase (NAD(+)-dependent) [Candidatus Regiella insecticola
LSR1]
gi|304282928|gb|EFL91383.1| DNA ligase (NAD(+)-dependent) [Candidatus Regiella insecticola
LSR1]
Length = 674
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 30/60 (50%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ ++ I HH+ Y+ LDNP D YDR+ L L+ Q+PEL D P VG
Sbjct: 4 IIQQINQRRAILQHHEYQYHVLDNPEIPDAEYDRLMNELRELETQYPELICADSPTQRVG 63
>gi|255658313|ref|ZP_05403722.1| DNA ligase, NAD-dependent [Mitsuokella multacida DSM 20544]
gi|260849632|gb|EEX69639.1| DNA ligase, NAD-dependent [Mitsuokella multacida DSM 20544]
Length = 675
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S + E+ L K +H YY DNP +D YD++ RL A++ ++PEL ++ P
Sbjct: 9 SIQQVKKELTELRKTIRYHNNRYYNEDNPEISDYEYDQLMLRLKAIEAKYPELITKNSPT 68
Query: 115 NTVG 118
VG
Sbjct: 69 QVVG 72
>gi|323495433|ref|ZP_08100510.1| NAD-dependent DNA ligase LigA [Vibrio brasiliensis LMG 20546]
gi|323310356|gb|EGA63543.1| NAD-dependent DNA ligase LigA [Vibrio brasiliensis LMG 20546]
Length = 669
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 28/62 (45%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ ++ L + +H YY D+P D YDR+ L ++ Q PEL D P
Sbjct: 3 QQIQEKLNQLRESLHYHGVKYYVEDSPEIPDAEYDRLMRELMEIEAQHPELVSLDSPSQR 62
Query: 117 VG 118
VG
Sbjct: 63 VG 64
>gi|184155951|ref|YP_001844291.1| NAD-dependent DNA ligase [Lactobacillus fermentum IFO 3956]
gi|254781353|sp|B2GDS9|DNLJ_LACF3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|183227295|dbj|BAG27811.1| NAD-dependent DNA ligase [Lactobacillus fermentum IFO 3956]
Length = 679
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 39/74 (52%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
+ K + V+ L+K +A E+ L + YY DNP D +YDR +RL ++++F
Sbjct: 1 MSKQEAVSELTKQQAQAELTPLREQLKKWGAEYYEQDNPSVEDYVYDRAYQRLVEIEQRF 60
Query: 105 PELFDEDHPWNTVG 118
P+L D P VG
Sbjct: 61 PDLVVPDSPTQRVG 74
>gi|121611375|ref|YP_999182.1| DNA ligase [Verminephrobacter eiseniae EF01-2]
gi|166216275|sp|A1WRA7|DNLJ_VEREI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|121556015|gb|ABM60164.1| DNA ligase, NAD-dependent [Verminephrobacter eiseniae EF01-2]
Length = 693
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 29/73 (39%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
LD + +A + L + +H Y+ LD P D YDR + L AL+
Sbjct: 5 LDHCPDPAQMDPAQADARIRALREQLVHWAHQYHVLDAPSVPDAEYDRAFQALQALEAAH 64
Query: 105 PELFDEDHPWNTV 117
P L D P V
Sbjct: 65 PALITPDSPTRRV 77
>gi|254785950|ref|YP_003073379.1| DNA ligase, NAD-dependent [Teredinibacter turnerae T7901]
gi|237685872|gb|ACR13136.1| DNA ligase, NAD-dependent [Teredinibacter turnerae T7901]
Length = 676
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 31/67 (46%)
Query: 52 TSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
+ + M L ++ HH + YY LD P D YDR+ L L+ +FP+L D
Sbjct: 4 SQVPSEAVMRRCNELHQLLNHHNRQYYLLDEPEIPDAEYDRLFHELKTLEAEFPQLETAD 63
Query: 112 HPWNTVG 118
P VG
Sbjct: 64 SPTQRVG 70
>gi|308377195|ref|ZP_07441467.2| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu008]
gi|13882885|gb|AAK47423.1| DNA ligase [Mycobacterium tuberculosis CDC1551]
gi|308348655|gb|EFP37506.1| NAD-dependent DNA ligase ligA [Mycobacterium tuberculosis SUMu008]
Length = 679
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 31/57 (54%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ + L + HQ YY D P+ +D +D + RL+AL+EQ PEL D P VG
Sbjct: 4 QWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALEEQHPELRTPDSPTQLVG 60
>gi|299139723|ref|ZP_07032896.1| DNA ligase, NAD-dependent [Acidobacterium sp. MP5ACTX8]
gi|298598347|gb|EFI54512.1| DNA ligase, NAD-dependent [Acidobacterium sp. MP5ACTX8]
Length = 723
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 49 KKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF 108
+LS + ++E L + HH+ YY LD P TD YD L L+ + PEL
Sbjct: 4 TPSNALSPDQ---QIEALREDLRHHEHLYYVLDAPELTDAQYDARMNELRRLETEHPELV 60
Query: 109 DEDHPWNTVG 118
D P VG
Sbjct: 61 TPDSPTQRVG 70
>gi|194466912|ref|ZP_03072899.1| DNA ligase, NAD-dependent [Lactobacillus reuteri 100-23]
gi|194453948|gb|EDX42845.1| DNA ligase, NAD-dependent [Lactobacillus reuteri 100-23]
Length = 680
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 37/73 (50%)
Query: 46 DKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFP 105
+K V L+ EA E++ L K YY DNP D +YDR +RL L+EQFP
Sbjct: 3 EKQTPVKELTLQEAQDEIKPLRAKLTKWGKEYYEQDNPTVEDHVYDRAYQRLVQLEEQFP 62
Query: 106 ELFDEDHPWNTVG 118
+L D P VG
Sbjct: 63 QLVSADSPTQRVG 75
>gi|299783520|gb|ADJ41518.1| DNA ligase, NAD-dependent [Lactobacillus fermentum CECT 5716]
Length = 679
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 39/74 (52%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
+ K + V+ L+K +A E+ L + YY DNP D +YDR +RL ++++F
Sbjct: 1 MSKQEAVSELTKQQAQAELTPLREQLKKWGAEYYEQDNPSVEDYVYDRAYQRLVEIEQRF 60
Query: 105 PELFDEDHPWNTVG 118
P+L D P VG
Sbjct: 61 PDLVVPDSPTQRVG 74
>gi|260662792|ref|ZP_05863686.1| DNA ligase, NAD-dependent [Lactobacillus fermentum 28-3-CHN]
gi|260552873|gb|EEX25872.1| DNA ligase, NAD-dependent [Lactobacillus fermentum 28-3-CHN]
Length = 679
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 39/74 (52%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
+ K + V+ L+K +A E+ L + YY DNP D +YDR +RL ++++F
Sbjct: 1 MSKQEAVSELTKQQAQAELTPLREQLKKWGAEYYEQDNPSVEDYVYDRAYQRLVEIEQRF 60
Query: 105 PELFDEDHPWNTVG 118
P+L D P VG
Sbjct: 61 PDLVVPDSPTQRVG 74
>gi|227515527|ref|ZP_03945576.1| DNA ligase (NAD(+)) [Lactobacillus fermentum ATCC 14931]
gi|227086140|gb|EEI21452.1| DNA ligase (NAD(+)) [Lactobacillus fermentum ATCC 14931]
Length = 679
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 39/74 (52%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
+ K + V+ L+K +A E+ L + YY DNP D +YDR +RL ++++F
Sbjct: 1 MSKQEAVSELTKQQAQAELTPLREQLKKWGAEYYEQDNPSVEDYVYDRAYQRLVEIEQRF 60
Query: 105 PELFDEDHPWNTVG 118
P+L D P VG
Sbjct: 61 PDLVVPDSPTQRVG 74
>gi|163782033|ref|ZP_02177032.1| D-tyrosyl-tRNA deacylase [Hydrogenivirga sp. 128-5-R1-1]
gi|159882565|gb|EDP76070.1| D-tyrosyl-tRNA deacylase [Hydrogenivirga sp. 128-5-R1-1]
Length = 715
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 31 EAKFLPNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLY 90
E + + R L S L++ +K K EA V+ L ++ +H YY +P+ +D Y
Sbjct: 7 ERELIELTRKLLSELERIRKAG---KEEAQEYVQELREVINYHDYKYYVQASPVISDYEY 63
Query: 91 DRVSERLDALQEQFPELFDEDHPWNTV 117
D++ L L++++PEL D P V
Sbjct: 64 DQLFRALRDLEKKYPELITPDSPTQRV 90
>gi|238919178|ref|YP_002932692.1| NAD-dependent DNA ligase LigA [Edwardsiella ictaluri 93-146]
gi|238868746|gb|ACR68457.1| DNA ligase, NAD-dependent, putative [Edwardsiella ictaluri 93-146]
Length = 672
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 29/60 (48%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++E L HH+ YY LD+P TD YDR+ +L L+ P L D P VG
Sbjct: 2 IEQQLEQLRDALRHHEYQYYVLDDPQITDAEYDRLMMQLKQLEAVHPALVTVDSPSQRVG 61
>gi|254510866|ref|ZP_05122933.1| DNA ligase, NAD-dependent [Rhodobacteraceae bacterium KLH11]
gi|221534577|gb|EEE37565.1| DNA ligase, NAD-dependent [Rhodobacteraceae bacterium KLH11]
Length = 750
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 35/74 (47%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
+ K V L++ +A E+ L L + Y+ D P +DG YD + R ++ +F
Sbjct: 1 MSKTTAVADLTEEDAQQELARLAAELLRANQLYHAEDAPELSDGDYDALKRRNAEIEARF 60
Query: 105 PELFDEDHPWNTVG 118
P+L D P VG
Sbjct: 61 PDLKRTDSPSEQVG 74
>gi|312870519|ref|ZP_07730638.1| DNA ligase (NAD+) [Lactobacillus oris PB013-T2-3]
gi|311093981|gb|EFQ52306.1| DNA ligase (NAD+) [Lactobacillus oris PB013-T2-3]
Length = 679
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 38/74 (51%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
+DK V L+ A E+ L + + + YY DNP D +YDR +RL L+++F
Sbjct: 1 MDKPTPVDQLTLAAAKQEIAPLREQLIKWGQEYYEQDNPSVEDYVYDRAYQRLVELEQRF 60
Query: 105 PELFDEDHPWNTVG 118
PEL D P VG
Sbjct: 61 PELKTSDSPTQHVG 74
>gi|158312936|ref|YP_001505444.1| DNA ligase, NAD-dependent [Frankia sp. EAN1pec]
gi|254781334|sp|A8L538|DNLJ_FRASN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|158108341|gb|ABW10538.1| DNA ligase, NAD-dependent [Frankia sp. EAN1pec]
Length = 703
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 25/56 (44%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
L + H YY LD P D YD + L+A++E+ PEL D P V
Sbjct: 29 RAAELARELEEHAYRYYVLDKPTVADAEYDALMRELEAIEERHPELRTPDSPTQKV 84
>gi|239815926|ref|YP_002944836.1| DNA ligase, NAD-dependent [Variovorax paradoxus S110]
gi|239802503|gb|ACS19570.1| DNA ligase, NAD-dependent [Variovorax paradoxus S110]
Length = 694
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 28/53 (52%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L + H YY LD P D YDR+ +RL AL+ ++PEL D P VG
Sbjct: 14 LSEQLHKHAHLYYVLDAPELPDAEYDRLFQRLQALEAEYPELRTPDSPTQRVG 66
>gi|119898292|ref|YP_933505.1| DNA ligase (NAD+) [Azoarcus sp. BH72]
gi|166215393|sp|A1K713|DNLJ_AZOSB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|119670705|emb|CAL94618.1| DNA ligase (NAD+) [Azoarcus sp. BH72]
Length = 693
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 21/50 (42%)
Query: 69 IALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY LD P D YDR+ L ++ PEL D P VG
Sbjct: 17 EIARHNHAYYVLDTPTIPDAEYDRLFRELQDIEAAHPELLTPDSPTQRVG 66
>gi|332290231|ref|YP_004421083.1| NAD-dependent DNA ligase LigA [Gallibacterium anatis UMN179]
gi|330433127|gb|AEC18186.1| NAD-dependent DNA ligase LigA [Gallibacterium anatis UMN179]
Length = 671
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 31/56 (55%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+E L +H+ Y+ LDNP+ D YDR+ +L L+ + PEL +D P VG
Sbjct: 8 IEQLRNDLRYHEYQYHVLDNPVIPDAEYDRMMNQLKRLEAEHPELITDDSPTQRVG 63
>gi|260769097|ref|ZP_05878031.1| DNA ligase [Vibrio furnissii CIP 102972]
gi|260617127|gb|EEX42312.1| DNA ligase [Vibrio furnissii CIP 102972]
Length = 669
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 25/60 (41%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L +H YY D+P D YDR+ L L+ Q PEL D P VG
Sbjct: 4 VEQRLTELKDTLHYHAIRYYVEDDPTIPDAEYDRLMRELLDLEAQHPELVTPDSPSQRVG 63
>gi|269216606|ref|ZP_06160460.1| DNA ligase, NAD-dependent [Slackia exigua ATCC 700122]
gi|269130135|gb|EEZ61217.1| DNA ligase, NAD-dependent [Slackia exigua ATCC 700122]
Length = 709
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 27/66 (40%)
Query: 53 SLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDH 112
+L V L K HH YY D P +D +D + L L++ PEL D
Sbjct: 13 ALDADGTRARVRALRKEIEHHTYLYYAKDAPEISDAAFDSLMRELRELEQAHPELIDPTS 72
Query: 113 PWNTVG 118
P VG
Sbjct: 73 PTQRVG 78
>gi|71907364|ref|YP_284951.1| NAD-dependent DNA ligase [Dechloromonas aromatica RCB]
gi|123746888|sp|Q47FA0|DNLJ_DECAR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|71846985|gb|AAZ46481.1| NAD-dependent DNA ligase [Dechloromonas aromatica RCB]
Length = 683
Score = 101 bits (253), Expect = 2e-20, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 27/63 (42%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
+ + H YY LD P D YD++ L L++Q+PEL D P +
Sbjct: 4 PEDVAKRAAWYRSELERHSYAYYVLDAPTIPDTEYDKLFRELQELEQQYPELLTADSPTH 63
Query: 116 TVG 118
VG
Sbjct: 64 RVG 66
>gi|16077730|ref|NP_388544.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. subtilis
str. 168]
gi|221308499|ref|ZP_03590346.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. subtilis
str. 168]
gi|221312822|ref|ZP_03594627.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. subtilis
str. NCIB 3610]
gi|221317746|ref|ZP_03599040.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. subtilis
str. JH642]
gi|221322025|ref|ZP_03603319.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. subtilis
str. SMY]
gi|7673987|sp|O31498|DNLJ_BACSU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|2632976|emb|CAB12482.1| DNA ligase [Bacillus subtilis subsp. subtilis str. 168]
Length = 668
Score = 101 bits (253), Expect = 2e-20, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K A E L + + YY LD P D YDR+ + L A++E+ P+L D P
Sbjct: 1 MDKETAKQRAEELRRTINKYSYEYYTLDEPSVPDAEYDRLMQELIAIEEEHPDLRTPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|315180839|gb|ADT87753.1| DNA ligase [Vibrio furnissii NCTC 11218]
Length = 669
Score = 101 bits (253), Expect = 2e-20, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 25/60 (41%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L +H YY D+P D YDR+ L L+ + PEL D P VG
Sbjct: 4 VEQRLTELKDTLHYHAIRYYVEDDPTIPDAEYDRLMRELLDLEARHPELVTPDSPSQRVG 63
>gi|118617527|ref|YP_905859.1| NAD-dependent DNA ligase LigA [Mycobacterium ulcerans Agy99]
gi|166216215|sp|A0PPW9|DNLJ_MYCUA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|118569637|gb|ABL04388.1| DNA ligase [NAD dependent] LigA [Mycobacterium ulcerans Agy99]
Length = 683
Score = 101 bits (253), Expect = 2e-20, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 32/57 (56%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ + L + HQ YY D P+ TD +D + RL+AL+EQ+PEL D P VG
Sbjct: 4 QWQELAEQVREHQFRYYVRDAPVITDAEFDELLRRLEALEEQYPELRTPDSPTQLVG 60
>gi|261854791|ref|YP_003262074.1| DNA ligase, NAD-dependent [Halothiobacillus neapolitanus c2]
gi|261835260|gb|ACX95027.1| DNA ligase, NAD-dependent [Halothiobacillus neapolitanus c2]
Length = 685
Score = 101 bits (253), Expect = 2e-20, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 24/59 (40%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L H YY LD+P +D +DR+ L ++ PE D P VG
Sbjct: 18 RARLLALRDEIERHNFRYYVLDDPEISDAAFDRLMRELQQIESAHPEWITPDSPTQRVG 76
>gi|321314391|ref|YP_004206678.1| NAD-dependent DNA ligase LigA [Bacillus subtilis BSn5]
gi|320020665|gb|ADV95651.1| NAD-dependent DNA ligase LigA [Bacillus subtilis BSn5]
Length = 668
Score = 101 bits (253), Expect = 2e-20, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K A E L + + YY LD P D YDR+ + L A++E+ P+L D P
Sbjct: 1 MDKETAKQRAEELRRTINKYSYEYYTLDEPSVPDAEYDRLMQELIAIEEEHPDLRTPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|77360026|ref|YP_339601.1| NAD-dependent DNA ligase [Pseudoalteromonas haloplanktis TAC125]
gi|123730523|sp|Q3IKB8|DNLJ_PSEHT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|76874937|emb|CAI86158.1| NAD-dependent DNA ligase [Pseudoalteromonas haloplanktis TAC125]
Length = 673
Score = 101 bits (253), Expect = 2e-20, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 29/58 (50%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ +L H YY LD P D YDR+ ++L AL+ Q PEL D P VG
Sbjct: 7 EQINHLRSTLEQHSYNYYVLDTPSIPDAEYDRLLQQLSALETQHPELITADSPTQKVG 64
>gi|296046583|gb|ADG86433.1| NAD-dependent DNA ligase [Francisella novicida]
Length = 673
Score = 101 bits (253), Expect = 2e-20, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 29/58 (50%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ +L H YY LD P D YDR+ ++L AL+ Q PEL D P VG
Sbjct: 7 EQINHLRSTLEQHSYNYYVLDTPSIPDAEYDRLLQQLSALETQHPELITADSPTQKVG 64
>gi|330466191|ref|YP_004403934.1| DNA ligase [Verrucosispora maris AB-18-032]
gi|328809162|gb|AEB43334.1| DNA ligase, NAD-dependent [Verrucosispora maris AB-18-032]
Length = 717
Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 29/61 (47%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+A L + HQ YY LD P +D +DR L AL+E+FP L D P V
Sbjct: 31 QARERHATLSQELTEHQYRYYVLDAPTVSDAEFDRQLRELTALEEEFPALRTPDSPTQRV 90
Query: 118 G 118
G
Sbjct: 91 G 91
>gi|320102706|ref|YP_004178297.1| NAD-dependent DNA ligase [Isosphaera pallida ATCC 43644]
gi|319749988|gb|ADV61748.1| DNA ligase, NAD-dependent [Isosphaera pallida ATCC 43644]
Length = 896
Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 32/64 (50%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
+ +E L + HH + YY P+ +D YDR+ + L+AL+ + P+L D P
Sbjct: 10 TDDPIRDRIERLRREIEHHNRLYYVEAAPVISDAEYDRLVKDLEALEAERPDLVTPDSPT 69
Query: 115 NTVG 118
VG
Sbjct: 70 QRVG 73
>gi|313891779|ref|ZP_07825384.1| DNA ligase (NAD+) [Dialister microaerophilus UPII 345-E]
gi|313119773|gb|EFR42960.1| DNA ligase (NAD+) [Dialister microaerophilus UPII 345-E]
Length = 666
Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 32/65 (49%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ E + +V+ L + +H YY LD P +D +D++ L + ++PEL D P
Sbjct: 1 MITNEIISKVKKLREELRYHSYLYYVLDKPEISDFEFDKMYRELVDFESKYPELITPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|225851368|ref|YP_002731602.1| DNA ligase, NAD-dependent [Persephonella marina EX-H1]
gi|254781385|sp|C0QSF6|DNLJ_PERMH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|225645574|gb|ACO03760.1| DNA ligase, NAD-dependent [Persephonella marina EX-H1]
Length = 714
Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 31 EAKFLPNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLY 90
E + + + L K KK +K +A +E L + +H YY L NP+ +D Y
Sbjct: 7 ERELIQRTKELL----KIKKEHIKTKEDAEAIIEDLRDVIRYHDWRYYVLANPVISDYEY 62
Query: 91 DRVSERLDALQEQFPELFDEDHPWNTV 117
D++ L ++ +FPEL D P V
Sbjct: 63 DQLFHLLKDIESRFPELITPDSPTQRV 89
>gi|71042246|pdb|1ZAU|A Chain A, Adenylation Domain Of Nad+ Dependent Dna Ligase From
M.Tuberculosis
Length = 328
Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 35/71 (49%)
Query: 48 AKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
+ + E + + + L + HQ YY D P+ +D +D + RL+AL+EQ PEL
Sbjct: 2 SSPDADQTAPEVLRQWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALEEQHPEL 61
Query: 108 FDEDHPWNTVG 118
D P VG
Sbjct: 62 RTPDSPTQLVG 72
>gi|291483102|dbj|BAI84177.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. natto
BEST195]
Length = 668
Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K A E L + + YY LD P D YDR+ + L A++E+ P+L D P
Sbjct: 1 MDKETAKQRAEELRRTINKYSYEYYTLDEPSVPDAEYDRLMQELIAIEEEHPDLRTPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|258510685|ref|YP_003184119.1| DNA ligase, NAD-dependent [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
gi|257477411|gb|ACV57730.1| DNA ligase, NAD-dependent [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
Length = 684
Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 34/67 (50%)
Query: 52 TSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
++LS EA + L + +H + YY DNP +D +D + L L+ ++PEL D
Sbjct: 8 SALSLEEARARAKVLREQIEYHNRKYYLEDNPEISDAEWDALMRDLIELERKYPELVDPA 67
Query: 112 HPWNTVG 118
P VG
Sbjct: 68 SPTQRVG 74
>gi|218289368|ref|ZP_03493602.1| DNA ligase, NAD-dependent [Alicyclobacillus acidocaldarius LAA1]
gi|218240474|gb|EED07655.1| DNA ligase, NAD-dependent [Alicyclobacillus acidocaldarius LAA1]
Length = 684
Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 34/67 (50%)
Query: 52 TSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
++LS EA + L + +H + YY DNP +D +D + L L+ ++PEL D
Sbjct: 8 SALSLEEARARAKVLREQIEYHNRKYYLEDNPEISDAEWDALMRDLIELERKYPELVDPA 67
Query: 112 HPWNTVG 118
P VG
Sbjct: 68 SPTQRVG 74
>gi|94310370|ref|YP_583580.1| DNA ligase, NAD-dependent [Cupriavidus metallidurans CH34]
gi|123383876|sp|Q1LNG5|DNLJ_RALME RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|93354222|gb|ABF08311.1| DNA ligase, NAD(+)-dependent [Cupriavidus metallidurans CH34]
Length = 721
Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 26/59 (44%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++L + + YY LD P D YD + L AL+ + PEL D P VG
Sbjct: 21 AERAQWLREELERYSYQYYVLDAPTIPDADYDALFIELQALEAEHPELLTPDSPTQRVG 79
>gi|56696562|ref|YP_166919.1| DNA ligase, NAD-dependent [Ruegeria pomeroyi DSS-3]
gi|81349987|sp|Q5LST6|DNLJ_SILPO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|56678299|gb|AAV94965.1| DNA ligase, NAD-dependent [Ruegeria pomeroyi DSS-3]
Length = 739
Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+++ EA E+ L + Y+ LD P +D YD + +R ++ +FP L D P
Sbjct: 1 MTEAEAAQELARLAGLLAQANLAYHTLDAPEISDADYDALKQRNAEIEARFPHLKRPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SEQVG 65
>gi|148544657|ref|YP_001272027.1| DNA ligase, NAD-dependent [Lactobacillus reuteri DSM 20016]
gi|184154010|ref|YP_001842351.1| NAD-dependent DNA ligase [Lactobacillus reuteri JCM 1112]
gi|227363780|ref|ZP_03847887.1| DNA ligase, NAD-dependent [Lactobacillus reuteri MM2-3]
gi|325682991|ref|ZP_08162507.1| NAD-dependent DNA ligase LigA [Lactobacillus reuteri MM4-1A]
gi|209572830|sp|A5VLG6|DNLJ_LACRD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254781354|sp|B2G8T9|DNLJ_LACRJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|148531691|gb|ABQ83690.1| DNA ligase, NAD-dependent [Lactobacillus reuteri DSM 20016]
gi|183225354|dbj|BAG25871.1| NAD-dependent DNA ligase [Lactobacillus reuteri JCM 1112]
gi|227071137|gb|EEI09453.1| DNA ligase, NAD-dependent [Lactobacillus reuteri MM2-3]
gi|324977341|gb|EGC14292.1| NAD-dependent DNA ligase LigA [Lactobacillus reuteri MM4-1A]
Length = 680
Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 37/73 (50%)
Query: 46 DKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFP 105
+K V L+ EA E++ L K YY DNP D +YDR +RL L+EQFP
Sbjct: 3 EKQTPVKELTLQEAQDEIKPLRAKLTKWGKEYYEQDNPTVEDHVYDRAYQRLVQLEEQFP 62
Query: 106 ELFDEDHPWNTVG 118
+L D P VG
Sbjct: 63 QLVSADSPTQRVG 75
>gi|7673996|sp|O87703|DNLJ_BACST RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|3688229|emb|CAA09732.1| DNA ligase [Geobacillus stearothermophilus]
Length = 670
Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 33/65 (50%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + +A L ++ + YY LD P D YDR+ + L A++EQ+PEL D P
Sbjct: 1 MDRQQAERRAAELRELLNRYGYEYYVLDRPSVPDAEYDRLMQELIAIEEQYPELKTSDSP 60
Query: 114 WNTVG 118
+G
Sbjct: 61 TQRIG 65
>gi|163845839|ref|YP_001633883.1| DNA ligase [Chloroflexus aurantiacus J-10-fl]
gi|222523550|ref|YP_002568020.1| DNA ligase, NAD-dependent [Chloroflexus sp. Y-400-fl]
gi|190359243|sp|A9WCA1|DNLJ_CHLAA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254781286|sp|B9LHI6|DNLJ_CHLSY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|163667128|gb|ABY33494.1| DNA ligase, NAD-dependent [Chloroflexus aurantiacus J-10-fl]
gi|222447429|gb|ACM51695.1| DNA ligase, NAD-dependent [Chloroflexus sp. Y-400-fl]
Length = 709
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 28/64 (43%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+S + L + + YY LD+P+ +D YD + L AL+ PEL D P
Sbjct: 1 MSHTTVADRINELRSLIRRYDYHYYVLDDPIVSDAEYDALMTELRALEAAHPELITPDSP 60
Query: 114 WNTV 117
V
Sbjct: 61 TQRV 64
>gi|295107089|emb|CBL04632.1| DNA ligase, NAD-dependent [Gordonibacter pamelaeae 7-10-1-b]
Length = 731
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Query: 36 PNKRALESWLDKAKKV-TSLSKGEA----MIEVEYLVKIALHHQKWYYRLDNPLFTDGLY 90
K A+E+ D+ + + + EA +E L + HH YY D P +DG +
Sbjct: 16 EVKTAVENMADEQQNLLDERALAEATSDPAARIEALRREIEHHTYLYYAQDAPEISDGAF 75
Query: 91 DRVSERLDALQEQFPELFDEDHPWNTVG 118
D + L L+ PEL D P VG
Sbjct: 76 DSLMRELRELEAAHPELVDPSSPTQRVG 103
>gi|300311482|ref|YP_003775574.1| NAD-dependent DNA ligase [Herbaspirillum seropedicae SmR1]
gi|300074267|gb|ADJ63666.1| NAD-dependent DNA ligase (contains BRCT domain type II) protein
[Herbaspirillum seropedicae SmR1]
Length = 688
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 24/53 (45%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L H YY LD P D YDR+ + L AL+ PEL D P VG
Sbjct: 25 LRADLNRHNYSYYVLDQPSIPDAEYDRLFQELQALETAHPELLTPDSPTQRVG 77
>gi|171059186|ref|YP_001791535.1| DNA ligase, NAD-dependent [Leptothrix cholodnii SP-6]
gi|254781357|sp|B1Y6D4|DNLJ_LEPCP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|170776631|gb|ACB34770.1| DNA ligase, NAD-dependent [Leptothrix cholodnii SP-6]
Length = 768
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 26/59 (44%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
A +L HH YY LD P D YDR+ + L A++ +P L D P V
Sbjct: 34 AAARAAWLRSTLQHHAHLYYVLDAPELPDAEYDRLFQELQAIEAMYPALRTADSPTQRV 92
>gi|306819948|ref|ZP_07453599.1| NAD-dependent DNA ligase LigA [Eubacterium yurii subsp. margaretiae
ATCC 43715]
gi|304551984|gb|EFM39924.1| NAD-dependent DNA ligase LigA [Eubacterium yurii subsp. margaretiae
ATCC 43715]
Length = 675
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 37/64 (57%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S EA +++E L + K YY DNP+ +D YD + +L +L+E++PEL D P
Sbjct: 3 SIDEARVKIEELKAEIEKNNKLYYEDDNPVISDYDYDMMMRQLISLEEKYPELKTPDSPS 62
Query: 115 NTVG 118
N VG
Sbjct: 63 NRVG 66
>gi|312112463|ref|YP_003990779.1| DNA ligase, NAD-dependent [Geobacillus sp. Y4.1MC1]
gi|311217564|gb|ADP76168.1| DNA ligase, NAD-dependent [Geobacillus sp. Y4.1MC1]
Length = 670
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 36/65 (55%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + A+ +E L ++ + YY LD P D YDR+ + L AL+EQ+P+L +D P
Sbjct: 1 MERQAAIKRIEELRELLNQYNYEYYVLDRPSVPDSEYDRLMQELIALEEQYPDLKTKDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SQRVG 65
>gi|304317508|ref|YP_003852653.1| DNA ligase, NAD-dependent [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302779010|gb|ADL69569.1| DNA ligase, NAD-dependent [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 659
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 26/60 (43%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L HH YY LD P +D YD + L L+E+ PE D P VG
Sbjct: 3 IEERIKELKDKLNHHNYMYYVLDRPEISDYEYDMMMRELIKLEEEHPEFKTPDSPTQRVG 62
>gi|193212122|ref|YP_001998075.1| DNA ligase, NAD-dependent [Chlorobaculum parvum NCIB 8327]
gi|254781284|sp|B3QLI5|DNLJ_CHLP8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|193085599|gb|ACF10875.1| DNA ligase, NAD-dependent [Chlorobaculum parvum NCIB 8327]
Length = 674
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 33/65 (50%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K +A E+ L H + YY P +D +D++ ERL AL+ +FPEL D P
Sbjct: 1 MDKAKAQQEIGKLRAEIERHNRLYYLEAKPEISDFEFDKLLERLIALETEFPELVTPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SQRVG 65
>gi|82701780|ref|YP_411346.1| DNA ligase, NAD-dependent [Nitrosospira multiformis ATCC 25196]
gi|123754406|sp|Q2YBB7|DNLJ_NITMU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|82409845|gb|ABB73954.1| DNA ligase, NAD-dependent [Nitrosospira multiformis ATCC 25196]
Length = 707
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
E + L H YY LD P D +D++ L+ L+++ PEL D P
Sbjct: 6 SEISRHMRELRDAIELHNIRYYELDTPTIPDADFDKLFRELEELEQRHPELITPDSPTQR 65
Query: 117 VG 118
VG
Sbjct: 66 VG 67
>gi|121604718|ref|YP_982047.1| DNA ligase [Polaromonas naphthalenivorans CJ2]
gi|166216226|sp|A1VN98|DNLJ_POLNA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|120593687|gb|ABM37126.1| DNA ligase, NAD-dependent [Polaromonas naphthalenivorans CJ2]
Length = 707
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 27/65 (41%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + + L H YY LD P D YDR+ + L AL+ PEL D P
Sbjct: 15 MPPASVIERIAALRAELDLHAHRYYVLDEPSIPDAEYDRLFKELQALEAAHPELLTPDSP 74
Query: 114 WNTVG 118
VG
Sbjct: 75 TQRVG 79
>gi|295401729|ref|ZP_06811695.1| DNA ligase, NAD-dependent [Geobacillus thermoglucosidasius
C56-YS93]
gi|294976216|gb|EFG51828.1| DNA ligase, NAD-dependent [Geobacillus thermoglucosidasius
C56-YS93]
Length = 670
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 36/65 (55%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + A+ +E L ++ + YY LD P D YDR+ + L AL+EQ+P+L +D P
Sbjct: 1 MERQAAIKRIEELRELLNQYNYEYYVLDRPSVPDSEYDRLMQELIALEEQYPDLKTKDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SQRVG 65
>gi|85859410|ref|YP_461612.1| NAD-dependent DNA ligase [Syntrophus aciditrophicus SB]
gi|123738818|sp|Q2LTN8|DNLJ_SYNAS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|85722501|gb|ABC77444.1| NAD-dependent DNA ligase [Syntrophus aciditrophicus SB]
Length = 672
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 35/65 (53%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ A +E L +H + YY+LD+P +D YD + + L AL++QFP+ ED P
Sbjct: 2 MDAESARKNIEDLKARIEYHNRRYYQLDDPEISDAEYDSLLQELIALEKQFPQWLTEDSP 61
Query: 114 WNTVG 118
+G
Sbjct: 62 SRRIG 66
>gi|11095423|gb|AAG29863.1|AF313764_6 DNA ligase [Zymomonas mobilis subsp. mobilis ZM4]
gi|49284|emb|CAA77966.1| DNA ligase [Zymomonas mobilis subsp. mobilis CP4]
gi|382210|prf||1819268B DNA ligase
Length = 731
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 37/67 (55%)
Query: 52 TSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
+LS+ +A+IE+E L K+ H+ Y+ DNP D YD + R +++ FP+L D
Sbjct: 24 KNLSREQAVIELERLAKLISHYDHLYHDKDNPAVPDSEYDALVLRNRRIEQFFPDLIRPD 83
Query: 112 HPWNTVG 118
P VG
Sbjct: 84 SPSKKVG 90
>gi|91788454|ref|YP_549406.1| DNA ligase [Polaromonas sp. JS666]
gi|123164833|sp|Q12AD4|DNLJ_POLSJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|91697679|gb|ABE44508.1| DNA ligase, NAD-dependent [Polaromonas sp. JS666]
Length = 706
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 28/71 (39%)
Query: 48 AKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
A+ S + L H YY LD P D YDR+ + L L+ +PEL
Sbjct: 8 AQPEPSRQPASPAERMAALRAELHAHAHRYYVLDEPTIPDSEYDRLFKELQDLEAAYPEL 67
Query: 108 FDEDHPWNTVG 118
D P VG
Sbjct: 68 LTPDSPTQRVG 78
>gi|332704021|ref|ZP_08424109.1| DNA ligase [Desulfovibrio africanus str. Walvis Bay]
gi|332554170|gb|EGJ51214.1| DNA ligase [Desulfovibrio africanus str. Walvis Bay]
Length = 771
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 29/63 (46%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
+ VE L K H YY LD P+ +D YDR+ L L+E PEL D P
Sbjct: 5 PEDIRQRVERLRKELHFHNYRYYVLDAPVISDAEYDRMMRELQDLEEHNPELRDTSSPTQ 64
Query: 116 TVG 118
VG
Sbjct: 65 RVG 67
>gi|319793880|ref|YP_004155520.1| DNA ligase, NAD-dependent [Variovorax paradoxus EPS]
gi|315596343|gb|ADU37409.1| DNA ligase, NAD-dependent [Variovorax paradoxus EPS]
Length = 694
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 28/53 (52%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L + H YY LD P D YD++ +RL AL+ +FPEL D P VG
Sbjct: 14 LSEQLHKHAHLYYVLDAPELPDAEYDKLFQRLQALETEFPELRTPDSPTQRVG 66
>gi|320105506|ref|YP_004181096.1| NAD-dependent DNA ligase [Terriglobus saanensis SP1PR4]
gi|319924027|gb|ADV81102.1| DNA ligase, NAD-dependent [Terriglobus saanensis SP1PR4]
Length = 694
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+S + E L HH+ YY LD P +D YD + L AL+ + PEL + P
Sbjct: 1 MSPEQRASE---LRAEIEHHEHAYYVLDKPEISDAQYDALVNLLKALETEHPELVTPESP 57
Query: 114 WNTVG 118
VG
Sbjct: 58 TQRVG 62
>gi|304312656|ref|YP_003812254.1| DNA ligase, NAD-dependent [gamma proteobacterium HdN1]
gi|301798389|emb|CBL46613.1| DNA ligase, NAD-dependent [gamma proteobacterium HdN1]
Length = 677
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 31/64 (48%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S E + L H YY LD+P D YDR+ +RL AL++ P+L +D P
Sbjct: 4 SSASDREEAQALRAQLQEHNYRYYVLDDPSVPDSEYDRLFQRLLALEQAHPDLITQDSPT 63
Query: 115 NTVG 118
VG
Sbjct: 64 QRVG 67
>gi|257095174|ref|YP_003168815.1| NAD-dependent DNA ligase [Candidatus Accumulibacter phosphatis
clade IIA str. UW-1]
gi|257047698|gb|ACV36886.1| DNA ligase, NAD-dependent [Candidatus Accumulibacter phosphatis
clade IIA str. UW-1]
Length = 675
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 25/58 (43%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L + YY LD P D YDR+ L AL+ + PEL D P VG
Sbjct: 5 ERLHSLRAEIERYDHEYYVLDAPSIADADYDRLFRELQALEAEHPELVSRDSPTQRVG 62
>gi|120403104|ref|YP_952933.1| NAD-dependent DNA ligase LigA [Mycobacterium vanbaalenii PYR-1]
gi|166216216|sp|A1T6X7|DNLJ_MYCVP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|119955922|gb|ABM12927.1| DNA ligase, NAD-dependent [Mycobacterium vanbaalenii PYR-1]
Length = 707
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 31/67 (46%)
Query: 52 TSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
++ + + L HQ YY D P+ TD +D + RL+AL+E PEL D
Sbjct: 18 DDATEAGLRRQWQELADEVRDHQFRYYVRDAPIITDAEFDAMLRRLEALEEAHPELRTPD 77
Query: 112 HPWNTVG 118
P VG
Sbjct: 78 SPTQLVG 84
>gi|39995996|ref|NP_951947.1| DNA ligase, NAD-dependent [Geobacter sulfurreducens PCA]
gi|81702997|sp|Q74ER9|DNLJ_GEOSL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|39982761|gb|AAR34220.1| DNA ligase, NAD-dependent [Geobacter sulfurreducens PCA]
gi|298505011|gb|ADI83734.1| DNA ligase, NAD-dependent [Geobacter sulfurreducens KN400]
Length = 670
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 28/65 (43%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K A V L H + YY D P TD YD + L L+ +FP+L D P
Sbjct: 1 MDKQTAADRVAALRTELERHNRLYYAEDRPEITDAEYDLLFRELVDLETRFPDLAAPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|134094553|ref|YP_001099628.1| DNA ligase [Herminiimonas arsenicoxydans]
gi|166215813|sp|A4G4R4|DNLJ_HERAR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|133738456|emb|CAL61501.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Herminiimonas
arsenicoxydans]
Length = 696
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 35 LPNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVS 94
L +K + +S + K++ S A +L H YY LDNP+ D YD++
Sbjct: 5 LFSKASKQSAATQPKEIPDASDPSARA--AWLRSELNRHNYAYYVLDNPIVPDAEYDQLF 62
Query: 95 ERLDALQEQFPELFDEDHPWNTVG 118
L AL+ PEL D P VG
Sbjct: 63 RELQALEASHPELLVFDSPTQRVG 86
>gi|56551260|ref|YP_162099.1| DNA ligase, NAD-dependent [Zymomonas mobilis subsp. mobilis ZM4]
gi|59802648|sp|P28719|DNLJ_ZYMMO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|56542834|gb|AAV88988.1| DNA ligase, NAD-dependent [Zymomonas mobilis subsp. mobilis ZM4]
Length = 731
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 36/67 (53%)
Query: 52 TSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
LS+ +A+IE+E L K+ H+ Y+ DNP D YD + R +++ FP+L D
Sbjct: 24 KDLSREQAVIELERLAKLISHYDHLYHDKDNPAVPDSEYDALVLRNRRIEQFFPDLIRPD 83
Query: 112 HPWNTVG 118
P VG
Sbjct: 84 SPSKKVG 90
>gi|88810628|ref|ZP_01125885.1| DNA ligase, NAD-dependent [Nitrococcus mobilis Nb-231]
gi|88792258|gb|EAR23368.1| DNA ligase, NAD-dependent [Nitrococcus mobilis Nb-231]
Length = 672
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 26/63 (41%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
+ V L H Y+ LD+P +D YD + L AL+ P+L D P
Sbjct: 6 RAAVERRVAALRDQIEQHNYRYFVLDDPQVSDADYDVLMRELQALEADHPDLVSPDSPTQ 65
Query: 116 TVG 118
VG
Sbjct: 66 RVG 68
>gi|302542307|ref|ZP_07294649.1| DNA ligase, NAD-dependent [Streptomyces hygroscopicus ATCC 53653]
gi|302459925|gb|EFL23018.1| DNA ligase, NAD-dependent [Streptomyces himastatinicus ATCC 53653]
Length = 740
Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 31/60 (51%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
EA E L + H+ YY D P+ +D +DR+ RL+AL+E PEL D P V
Sbjct: 12 EARDEHAKLAEQVEEHRFRYYVKDAPIVSDAEFDRLLRRLEALEEDHPELRTPDSPTQKV 71
>gi|30249713|ref|NP_841783.1| NAD-dependent DNA ligase [Nitrosomonas europaea ATCC 19718]
gi|75540341|sp|Q82TW6|DNLJ_NITEU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|30180750|emb|CAD85664.1| NAD-dependent DNA ligase [Nitrosomonas europaea ATCC 19718]
Length = 681
Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 28/65 (43%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+S+ ++ L H YY D P+ D YD + L L++Q+P L D P
Sbjct: 2 ISENTIEERLQALRAAIALHDFHYYVQDAPVIPDAEYDALFRTLQQLEQQYPHLVTPDSP 61
Query: 114 WNTVG 118
VG
Sbjct: 62 TQRVG 66
>gi|148557620|ref|YP_001265202.1| DNA ligase, NAD-dependent [Sphingomonas wittichii RW1]
gi|190359290|sp|A5VFJ8|DNLJ_SPHWW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|148502810|gb|ABQ71064.1| DNA ligase, NAD-dependent [Sphingomonas wittichii RW1]
Length = 708
Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 28/64 (43%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
++ +A + +L H Y+ D P +D YD + AL+ ++P L D P
Sbjct: 3 TESQAAERLAFLAAEIARHNALYHGEDAPEISDADYDALMRENAALEAEYPHLVRADSPS 62
Query: 115 NTVG 118
VG
Sbjct: 63 KLVG 66
>gi|108798849|ref|YP_639046.1| NAD-dependent DNA ligase LigA [Mycobacterium sp. MCS]
gi|119867964|ref|YP_937916.1| NAD-dependent DNA ligase LigA [Mycobacterium sp. KMS]
gi|126434449|ref|YP_001070140.1| NAD-dependent DNA ligase LigA [Mycobacterium sp. JLS]
gi|123369452|sp|Q1BAU4|DNLJ_MYCSS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|166216212|sp|A3PXM2|DNLJ_MYCSJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|166216213|sp|A1UE68|DNLJ_MYCSK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|108769268|gb|ABG07990.1| DNA ligase, NAD-dependent [Mycobacterium sp. MCS]
gi|119694053|gb|ABL91126.1| DNA ligase, NAD-dependent [Mycobacterium sp. KMS]
gi|126234249|gb|ABN97649.1| DNA ligase, NAD-dependent [Mycobacterium sp. JLS]
Length = 701
Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 47 KAKKVTSLSKGEAMIEVEY--LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
A ++ EA + + L HQ YY D P+ +D +D++ ++L+AL+ +
Sbjct: 8 DAGPQEQATEAEAELRHRWQALADEVRDHQFRYYVRDAPVISDADFDKLFQQLEALEAEH 67
Query: 105 PELFDEDHPWNTVG 118
PEL D P VG
Sbjct: 68 PELRAPDSPTQLVG 81
>gi|39936579|ref|NP_948855.1| DNA ligase [Rhodopseudomonas palustris CGA009]
gi|39650435|emb|CAE28958.1| DNA ligase [Rhodopseudomonas palustris CGA009]
Length = 692
Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 30/55 (54%)
Query: 64 EYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L H K YY+ D P +D YD + RL+A++++FPEL + P TVG
Sbjct: 1 MRLRLEIEGHDKAYYQDDAPKISDADYDALRRRLEAIEQKFPELVNASSPTQTVG 55
>gi|302878427|ref|YP_003846991.1| DNA ligase, NAD-dependent [Gallionella capsiferriformans ES-2]
gi|302581216|gb|ADL55227.1| DNA ligase, NAD-dependent [Gallionella capsiferriformans ES-2]
Length = 674
Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 24/65 (36%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ ++ L H YY LD P D YD + L L+ Q PE D P
Sbjct: 1 MVSAVVQQRIKALRSEIEAHNYQYYVLDAPTVPDAGYDTLFRELQRLEAQHPEFLTSDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|194289797|ref|YP_002005704.1| DNA ligase [Cupriavidus taiwanensis LMG 19424]
gi|254781303|sp|B3R2C2|DNLJ_CUPTR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|193223632|emb|CAQ69639.1| DNA ligase [Cupriavidus taiwanensis LMG 19424]
Length = 709
Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 26/58 (44%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
V +L + H YY LD P D YD + L AL+ + PEL D P VG
Sbjct: 26 SRVAWLREELDRHNYQYYVLDAPTVPDAEYDALFSELMALELEHPELQTPDSPTQRVG 83
>gi|332284990|ref|YP_004416901.1| DNA ligase [Pusillimonas sp. T7-7]
gi|330428943|gb|AEC20277.1| DNA ligase [Pusillimonas sp. T7-7]
Length = 698
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 26/60 (43%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
A E L H YY D P+ +D YD++ L L++ PEL + P VG
Sbjct: 11 AAQRAETLRAEINEHNHRYYVQDAPVVSDAAYDKLMTELIELEQTHPELITPESPTQRVG 70
>gi|317121135|ref|YP_004101138.1| DNA ligase, NAD-dependent [Thermaerobacter marianensis DSM 12885]
gi|315591115|gb|ADU50411.1| DNA ligase, NAD-dependent [Thermaerobacter marianensis DSM 12885]
Length = 764
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 23/50 (46%)
Query: 69 IALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH YY LD P D YD + L L+ +FPE+ D P VG
Sbjct: 34 QIRHHDYLYYVLDRPEIDDAAYDALMRELRELEARFPEIVTPDSPTQRVG 83
>gi|229496499|ref|ZP_04390213.1| DNA ligase, NAD-dependent [Porphyromonas endodontalis ATCC 35406]
gi|229316396|gb|EEN82315.1| DNA ligase, NAD-dependent [Porphyromonas endodontalis ATCC 35406]
Length = 671
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 27/60 (45%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+E L H YY L PL +D +DR+ ++L L+ Q PEL P VG
Sbjct: 4 VEERIEQLRSEIEQHNYRYYVLSTPLISDVEFDRLMQQLIDLEAQHPELITPTSPTQRVG 63
>gi|322418721|ref|YP_004197944.1| NAD-dependent DNA ligase [Geobacter sp. M18]
gi|320125108|gb|ADW12668.1| DNA ligase, NAD-dependent [Geobacter sp. M18]
Length = 668
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 30/65 (46%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ A + +L K H + YY D P TD YD + L L+++FPEL D P
Sbjct: 1 MEAQAAAERIAWLSKEIERHNRLYYEQDMPEITDAEYDALFRELQELEKKFPELALPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TGRVG 65
>gi|295697355|ref|YP_003590593.1| DNA ligase, NAD-dependent [Bacillus tusciae DSM 2912]
gi|295412957|gb|ADG07449.1| DNA ligase, NAD-dependent [Bacillus tusciae DSM 2912]
Length = 677
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 30/63 (47%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
+G+A +E L + + YY LD+PL D YDR L L+ + PEL D P
Sbjct: 3 DQGDAARRIEELRALIRRYDYHYYVLDDPLVDDAEYDRCMRELVELEARHPELVTPDSPT 62
Query: 115 NTV 117
V
Sbjct: 63 QRV 65
>gi|221632243|ref|YP_002521464.1| DNA ligase, NAD-dependent [Thermomicrobium roseum DSM 5159]
gi|254781441|sp|B9KXM2|DNLJ_THERP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|221155911|gb|ACM05038.1| DNA ligase, NAD-dependent [Thermomicrobium roseum DSM 5159]
Length = 695
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 29/63 (46%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
E VE L ++ + YY L+ P +D YD + L +EQ+PEL D P
Sbjct: 13 PPEVRARVEELRRLIQRYNYEYYVLNAPTVSDAEYDALMLELRRWEEQYPELVTPDSPTQ 72
Query: 116 TVG 118
VG
Sbjct: 73 RVG 75
>gi|254488738|ref|ZP_05101943.1| DNA ligase, NAD-dependent [Roseobacter sp. GAI101]
gi|214045607|gb|EEB86245.1| DNA ligase, NAD-dependent [Roseobacter sp. GAI101]
Length = 706
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 31/68 (45%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V LSK +A E+ L + + YY D P +D YD + R ++ +FP L
Sbjct: 7 VQDLSKDQAAEELRRLSGLLAQANRQYYAEDAPQISDAEYDCLKRRNTEIETRFPSLKRA 66
Query: 111 DHPWNTVG 118
D P +G
Sbjct: 67 DSPTEQIG 74
>gi|154685157|ref|YP_001420318.1| NAD-dependent DNA ligase LigA [Bacillus amyloliquefaciens FZB42]
gi|166215394|sp|A7Z261|DNLJ_BACA2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|154351008|gb|ABS73087.1| LigA [Bacillus amyloliquefaciens FZB42]
Length = 669
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K A E L + + YY LD P D YDR+ + L A++E+ PEL D P
Sbjct: 2 MDKETAKHRAEELRRTIDQYSYEYYTLDEPSVPDSEYDRLMQELIAIEEEHPELRTPDSP 61
Query: 114 WNTVG 118
VG
Sbjct: 62 TQRVG 66
>gi|52313150|emb|CAH55605.1| DNA ligase (NAD dependent) [Bacillus amyloliquefaciens FZB42]
Length = 668
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K A E L + + YY LD P D YDR+ + L A++E+ PEL D P
Sbjct: 1 MDKETAKHRAEELRRTIDQYSYEYYTLDEPSVPDSEYDRLMQELIAIEEEHPELRTPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|15827911|ref|NP_302174.1| NAD-dependent DNA ligase LigA [Mycobacterium leprae TN]
gi|221230388|ref|YP_002503804.1| NAD-dependent DNA ligase LigA [Mycobacterium leprae Br4923]
gi|7674013|sp|O33102|DNLJ_MYCLE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254781376|sp|B8ZS27|DNLJ_MYCLB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|2414536|emb|CAB16425.1| DNA ligase [Mycobacterium leprae]
gi|13093464|emb|CAC30658.1| DNA ligase [Mycobacterium leprae]
gi|219933495|emb|CAR71800.1| DNA ligase [Mycobacterium leprae Br4923]
Length = 694
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 32/71 (45%)
Query: 48 AKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
+ E + + L + HQ YY D P+ +D +D + +RL L+EQ PEL
Sbjct: 2 SSPEADPIGPEVLQQWRKLTEEVREHQFRYYVRDAPIISDAEFDALLDRLTVLEEQHPEL 61
Query: 108 FDEDHPWNTVG 118
D P VG
Sbjct: 62 CTPDSPTQLVG 72
>gi|293603951|ref|ZP_06686365.1| NAD-dependent DNA ligase LigA [Achromobacter piechaudii ATCC 43553]
gi|292817644|gb|EFF76711.1| NAD-dependent DNA ligase LigA [Achromobacter piechaudii ATCC 43553]
Length = 700
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 26/55 (47%)
Query: 64 EYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+L H YY D P +D YD + +L+AL+ + PEL + P VG
Sbjct: 15 AHLRAELEQHNVRYYVYDEPSISDAEYDGLMRQLEALEAEHPELITPESPTQRVG 69
>gi|296330120|ref|ZP_06872602.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. spizizenii
ATCC 6633]
gi|305673365|ref|YP_003865037.1| NAD-dependent DNA ligase [Bacillus subtilis subsp. spizizenii str.
W23]
gi|296152709|gb|EFG93576.1| NAD-dependent DNA ligase LigA [Bacillus subtilis subsp. spizizenii
ATCC 6633]
gi|305411609|gb|ADM36728.1| NAD-dependent DNA ligase [Bacillus subtilis subsp. spizizenii str.
W23]
Length = 668
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K A + L + + YY LD P D YDR+ + L A++E+ P+L D P
Sbjct: 1 MDKETAKQRADELRRTINKYSYEYYTLDEPSVPDAEYDRLMQELIAIEEEHPDLRTPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|227543584|ref|ZP_03973633.1| DNA ligase, NAD-dependent [Lactobacillus reuteri CF48-3A]
gi|300909387|ref|ZP_07126848.1| NAD-dependent DNA ligase LigA [Lactobacillus reuteri SD2112]
gi|227186424|gb|EEI66495.1| DNA ligase, NAD-dependent [Lactobacillus reuteri CF48-3A]
gi|300893252|gb|EFK86611.1| NAD-dependent DNA ligase LigA [Lactobacillus reuteri SD2112]
Length = 680
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 36/72 (50%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
K V L+ EA E++ L K YY DNP D +YDR +RL L+EQFP+
Sbjct: 4 KQTPVKELTLQEAQDEIKPLRAKLTEWGKEYYEQDNPTVEDHVYDRAYQRLVQLEEQFPQ 63
Query: 107 LFDEDHPWNTVG 118
L D P VG
Sbjct: 64 LLSADSPTQRVG 75
>gi|328885211|emb|CCA58450.1| DNA ligase [Streptomyces venezuelae ATCC 10712]
Length = 726
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 33/62 (53%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
EA + L + H+ YY D P+ +DG +D++ L+AL+E++PEL D P
Sbjct: 9 PAEAREKHAELAEQIEEHRFRYYVKDQPVISDGEFDKLLRALEALEEEYPELRTPDSPTQ 68
Query: 116 TV 117
V
Sbjct: 69 KV 70
>gi|297528690|ref|YP_003669965.1| DNA ligase, NAD-dependent [Geobacillus sp. C56-T3]
gi|297251942|gb|ADI25388.1| DNA ligase, NAD-dependent [Geobacillus sp. C56-T3]
Length = 670
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 33/65 (50%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + +A L ++ + YY LD P D YDR+ + L A++EQ+PEL D P
Sbjct: 1 MDRQQAERRAAELRELLHRYGYEYYVLDRPSVPDAEYDRLMQELIAIEEQYPELKTSDSP 60
Query: 114 WNTVG 118
+G
Sbjct: 61 TQRIG 65
>gi|238063192|ref|ZP_04607901.1| DNA ligase, NAD-dependent [Micromonospora sp. ATCC 39149]
gi|237885003|gb|EEP73831.1| DNA ligase, NAD-dependent [Micromonospora sp. ATCC 39149]
Length = 702
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 29/61 (47%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
EA L + HQ YY LD P +D +DR L+AL+ +FP L D P +
Sbjct: 16 EARERHATLSQELTEHQYRYYVLDAPTVSDAEFDRQLRELEALEAEFPALRTPDSPTQRI 75
Query: 118 G 118
G
Sbjct: 76 G 76
>gi|330960233|gb|EGH60493.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. maculicola
str. ES4326]
Length = 787
Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 24/60 (40%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L H Y+ LD P D YDR+ L AL+ + P L D P VG
Sbjct: 4 VETRILELRAELDQHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLVTPDSPTQRVG 63
>gi|126736446|ref|ZP_01752187.1| DNA ligase, NAD-dependent [Roseobacter sp. CCS2]
gi|126713984|gb|EBA10854.1| DNA ligase, NAD-dependent [Roseobacter sp. CCS2]
Length = 715
Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 35/69 (50%)
Query: 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
V SLS +A E+ +L Y+R D P +D YD + R A++ QFP+L
Sbjct: 16 PVASLSPEQATKELSWLATQLNAANTAYHRDDAPDISDATYDALKRRNAAIEAQFPDLKR 75
Query: 110 EDHPWNTVG 118
+D P TVG
Sbjct: 76 QDSPSETVG 84
>gi|323499974|ref|ZP_08104932.1| NAD-dependent DNA ligase LigA [Vibrio sinaloensis DSM 21326]
gi|323314991|gb|EGA68044.1| NAD-dependent DNA ligase LigA [Vibrio sinaloensis DSM 21326]
Length = 669
Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 28/62 (45%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
E ++ L + +H YY D+P D YDR+ L L+ Q P+L D P
Sbjct: 3 KEIQEKLNQLRETLHYHGVKYYVEDSPEIPDAEYDRLMRELMELESQHPDLMSLDSPSQR 62
Query: 117 VG 118
VG
Sbjct: 63 VG 64
>gi|124267002|ref|YP_001021006.1| DNA ligase (NAD+) [Methylibium petroleiphilum PM1]
gi|166215820|sp|A2SGT2|DNLJ_METPP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|124259777|gb|ABM94771.1| DNA ligase (NAD+) [Methylibium petroleiphilum PM1]
Length = 677
Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 24/61 (39%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ L + +H YY LD P D YDR+ L AL+ P L D P
Sbjct: 6 EDPAARAAQLREQLEYHAHRYYVLDAPEIPDAEYDRLFTELQALEAAHPGLRTPDSPTQR 65
Query: 117 V 117
V
Sbjct: 66 V 66
>gi|169630426|ref|YP_001704075.1| NAD-dependent DNA ligase LigA [Mycobacterium abscessus ATCC 19977]
gi|254781373|sp|B1MDV2|DNLJ_MYCA9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|169242393|emb|CAM63421.1| DNA ligase (polydeoxyribonucleotide synthase NAD+) [Mycobacterium
abscessus]
Length = 681
Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 32/62 (51%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ + L + HQ YY D P+ +DG +D + RL AL+EQ+PEL D P
Sbjct: 3 SDIQRQWGELAEEVRGHQFRYYVKDAPVISDGQFDELLRRLTALEEQYPELRTPDSPTQL 62
Query: 117 VG 118
VG
Sbjct: 63 VG 64
>gi|138893932|ref|YP_001124385.1| NAD-dependent DNA ligase LigA [Geobacillus thermodenitrificans
NG80-2]
gi|166215760|sp|A4IJY6|DNLJ_GEOTN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|134265445|gb|ABO65640.1| DNA ligase [Geobacillus thermodenitrificans NG80-2]
Length = 670
Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 33/65 (50%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + +A L ++ + YY LD P D YDR+ + L A+++Q+PEL D P
Sbjct: 1 MDRQQAKRRAAELRELLNRYGYEYYVLDRPSVPDAEYDRLMQELIAIEKQYPELKTSDSP 60
Query: 114 WNTVG 118
+G
Sbjct: 61 TQRIG 65
>gi|114330949|ref|YP_747171.1| DNA ligase, NAD-dependent [Nitrosomonas eutropha C91]
gi|114307963|gb|ABI59206.1| DNA ligase, NAD-dependent [Nitrosomonas eutropha C91]
Length = 715
Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 28/64 (43%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S+ ++ L H YY D P+ D YD++ L L++Q+P L D P
Sbjct: 35 SEKIIEERLKALRSTIALHDFHYYVQDAPIIPDADYDKLFRTLQQLEQQYPHLITPDSPT 94
Query: 115 NTVG 118
VG
Sbjct: 95 QRVG 98
>gi|94499335|ref|ZP_01305873.1| DNA ligase, NAD-dependent [Oceanobacter sp. RED65]
gi|94428967|gb|EAT13939.1| DNA ligase, NAD-dependent [Oceanobacter sp. RED65]
Length = 694
Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 46 DKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFP 105
D KV + + V L YY LD+P D YDR+ L L+ + P
Sbjct: 13 DNVPKVDDAT----LTRVAELRDELNRANHAYYVLDDPSIPDAEYDRLFHELKGLESKHP 68
Query: 106 ELFDEDHPWNTVG 118
EL +D P VG
Sbjct: 69 ELLTKDSPTQRVG 81
>gi|189499438|ref|YP_001958908.1| DNA ligase, NAD-dependent [Chlorobium phaeobacteroides BS1]
gi|254781285|sp|B3EM49|DNLJ_CHLPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|189494879|gb|ACE03427.1| DNA ligase, NAD-dependent [Chlorobium phaeobacteroides BS1]
Length = 684
Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 34/65 (52%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K +A+ E+ L + H YY L P +D YD + E+L AL+ +FPEL D P
Sbjct: 1 MDKKQAVAEIIRLREEIDRHNYRYYVLARPEISDFQYDAMLEKLVALEGEFPELKTSDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SQRVG 65
>gi|300114089|ref|YP_003760664.1| DNA ligase, NAD-dependent [Nitrosococcus watsonii C-113]
gi|299540026|gb|ADJ28343.1| DNA ligase, NAD-dependent [Nitrosococcus watsonii C-113]
Length = 675
Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 32/63 (50%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
A ++ L ++ ++ YY +DNPL D YDR+ L L+E +PEL D P
Sbjct: 4 PAPAKDRIQALKELINNYDYAYYVMDNPLIPDSEYDRLIRELRVLEENYPELITLDSPTQ 63
Query: 116 TVG 118
VG
Sbjct: 64 RVG 66
>gi|66045063|ref|YP_234904.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. syringae
B728a]
gi|75502608|sp|Q4ZVF6|DNLJ_PSEU2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|63255770|gb|AAY36866.1| NAD-dependent DNA ligase [Pseudomonas syringae pv. syringae B728a]
Length = 787
Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 24/60 (40%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L H Y+ LD P D YDR+ L AL+ + P L D P VG
Sbjct: 4 VETRILELRAELDQHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLVTPDSPTQRVG 63
>gi|258404928|ref|YP_003197670.1| DNA ligase, NAD-dependent [Desulfohalobium retbaense DSM 5692]
gi|257797155|gb|ACV68092.1| DNA ligase, NAD-dependent [Desulfohalobium retbaense DSM 5692]
Length = 678
Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 32/65 (49%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+++ V L + HH YY LD P +D YD + + L AL+ ++PEL D P
Sbjct: 1 MAEQSVQSRVASLRETIRHHDYLYYVLDAPQISDNEYDALFKELQALEHRYPELDDPASP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TKRVG 65
>gi|291557760|emb|CBL34877.1| DNA ligase, NAD-dependent [Eubacterium siraeum V10Sc8a]
Length = 660
Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K + E E L + H YY LD+P D YDR+ R+ ++ + PE+ E P
Sbjct: 1 MDKEQIKSEYEQLCREVEQHNFNYYVLDDPTIEDDEYDRLMRRIKEIEAENPEIVSESSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQHVG 65
>gi|261418603|ref|YP_003252285.1| NAD-dependent DNA ligase LigA [Geobacillus sp. Y412MC61]
gi|319765418|ref|YP_004130919.1| DNA ligase, NAD-dependent [Geobacillus sp. Y412MC52]
gi|261375060|gb|ACX77803.1| DNA ligase, NAD-dependent [Geobacillus sp. Y412MC61]
gi|317110284|gb|ADU92776.1| DNA ligase, NAD-dependent [Geobacillus sp. Y412MC52]
Length = 670
Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 33/65 (50%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + +A L ++ + YY LD P D YDR+ + L A++EQ+PEL D P
Sbjct: 1 MDRQQAERRAAELRELLHRYGYEYYVLDRPSVPDAEYDRLMQELMAIEEQYPELKTSDSP 60
Query: 114 WNTVG 118
+G
Sbjct: 61 TQRIG 65
>gi|197117724|ref|YP_002138151.1| NAD-dependent DNA ligase [Geobacter bemidjiensis Bem]
gi|254781337|sp|B5EIJ0|DNLJ_GEOBB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|197087084|gb|ACH38355.1| DNA ligase, NAD-dependent [Geobacter bemidjiensis Bem]
Length = 668
Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 29/65 (44%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K A +++L H + YY D P TD YD + L L+ +P+L D P
Sbjct: 1 MDKTAAAQRIKWLSSEIERHNRLYYEQDMPEITDAEYDALFRELKELEASYPDLALPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TGRVG 65
>gi|227530245|ref|ZP_03960294.1| DNA ligase (NAD(+)) [Lactobacillus vaginalis ATCC 49540]
gi|227349834|gb|EEJ40125.1| DNA ligase (NAD(+)) [Lactobacillus vaginalis ATCC 49540]
Length = 680
Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 38/73 (52%)
Query: 46 DKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFP 105
+++ V L+ +A E+ L K K YY D+P D +YDR +RL ++++FP
Sbjct: 3 NQSIPVAQLTLDQAKEEIGPLRKQIAQWGKEYYEQDSPTVEDYVYDRQYQRLVQIEQRFP 62
Query: 106 ELFDEDHPWNTVG 118
EL D P VG
Sbjct: 63 ELQTPDSPTQQVG 75
>gi|166216290|sp|Q0AHH6|DNLJ_NITEC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
Length = 683
Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 28/64 (43%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S+ ++ L H YY D P+ D YD++ L L++Q+P L D P
Sbjct: 3 SEKIIEERLKALRSTIALHDFHYYVQDAPIIPDADYDKLFRTLQQLEQQYPHLITPDSPT 62
Query: 115 NTVG 118
VG
Sbjct: 63 QRVG 66
>gi|29829290|ref|NP_823924.1| NAD-dependent DNA ligase LigA [Streptomyces avermitilis MA-4680]
gi|81719851|sp|Q82JK7|DNLJ_STRAW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|29606397|dbj|BAC70459.1| putative DNA ligase [Streptomyces avermitilis MA-4680]
Length = 730
Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 31/62 (50%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
EA + L + H+ YY D P+ +D +D + L+AL+E++PEL D P
Sbjct: 13 PAEAREKHAQLAEQIEEHRFRYYVKDAPVVSDAEFDTLLRSLEALEEEYPELRTPDSPTQ 72
Query: 116 TV 117
V
Sbjct: 73 KV 74
>gi|56418811|ref|YP_146129.1| NAD-dependent DNA ligase LigA [Geobacillus kaustophilus HTA426]
gi|81348272|sp|Q5L3B9|DNLJ_GEOKA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|56378653|dbj|BAD74561.1| DNA ligase (polydeoxyribonucleotide synthase[NAD+]) [Geobacillus
kaustophilus HTA426]
Length = 670
Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 33/65 (50%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + +A L ++ + YY LD P D YDR+ + L A++EQ+PEL D P
Sbjct: 1 MDRQQAERRAAELRELLHRYGYEYYVLDRPSVPDAEYDRLMQELMAIEEQYPELKTSDSP 60
Query: 114 WNTVG 118
+G
Sbjct: 61 TQRIG 65
>gi|146293460|ref|YP_001183884.1| DNA ligase, NAD-dependent [Shewanella putrefaciens CN-32]
gi|166216243|sp|A4Y802|DNLJ_SHEPC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|145565150|gb|ABP76085.1| DNA ligase, NAD-dependent [Shewanella putrefaciens CN-32]
Length = 685
Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 30/67 (44%)
Query: 52 TSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
+S A ++ L + H YY D P TD YDR+ + L L+ QFP+ D
Sbjct: 12 ADMSPENAQQVMQALSQSLNEHNIRYYVDDAPTITDSEYDRLMQCLIKLEAQFPQFIVAD 71
Query: 112 HPWNTVG 118
P VG
Sbjct: 72 SPTQRVG 78
>gi|283779823|ref|YP_003370578.1| DNA ligase, NAD-dependent [Pirellula staleyi DSM 6068]
gi|283438276|gb|ADB16718.1| DNA ligase, NAD-dependent [Pirellula staleyi DSM 6068]
Length = 676
Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 28/61 (45%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E + ++ L + H YY P +D YDR+ + L ++ FPEL D P V
Sbjct: 7 EILERLQALREAIRRHDYLYYVRAQPEISDLEYDRLMQDLTTIEASFPELVTPDSPTQRV 66
Query: 118 G 118
G
Sbjct: 67 G 67
>gi|323697702|ref|ZP_08109614.1| DNA ligase, NAD-dependent [Desulfovibrio sp. ND132]
gi|323457634|gb|EGB13499.1| DNA ligase, NAD-dependent [Desulfovibrio desulfuricans ND132]
Length = 684
Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 30/65 (46%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ V L + HH YY LD+P +D +D + L AL+ + PEL D + P
Sbjct: 1 MVPESVAERVAELRQKIDHHNYRYYVLDDPEISDQEFDVLFRELAALEAEHPELDDPNSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TRRVG 65
>gi|261253653|ref|ZP_05946226.1| DNA ligase [Vibrio orientalis CIP 102891]
gi|260937044|gb|EEX93033.1| DNA ligase [Vibrio orientalis CIP 102891]
Length = 669
Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 28/61 (45%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E ++ L + +H YY DNP D YDR+ L L+ Q PEL D P V
Sbjct: 4 EIQEKLNQLRETLHYHGVKYYVEDNPEIPDAEYDRLMRDLMELESQHPELMSIDSPSQRV 63
Query: 118 G 118
G
Sbjct: 64 G 64
>gi|237799321|ref|ZP_04587782.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. oryzae str.
1_6]
gi|331022177|gb|EGI02234.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. oryzae str.
1_6]
Length = 703
Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 24/60 (40%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L H Y+ LD P D YDR+ L AL+ + P L D P VG
Sbjct: 4 VETRILELRAELDQHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLVTPDSPTQRVG 63
>gi|196250518|ref|ZP_03149209.1| DNA ligase, NAD-dependent [Geobacillus sp. G11MC16]
gi|196210008|gb|EDY04776.1| DNA ligase, NAD-dependent [Geobacillus sp. G11MC16]
Length = 670
Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 33/65 (50%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + +A L ++ + YY LD P D YDR+ + L A+++Q+PEL D P
Sbjct: 1 MDRQQAKRRATELRELLNRYGYEYYVLDRPSVPDAEYDRLMQELIAIEKQYPELKTSDSP 60
Query: 114 WNTVG 118
+G
Sbjct: 61 TQRIG 65
>gi|302554316|ref|ZP_07306658.1| DNA ligase, NAD-dependent [Streptomyces viridochromogenes DSM
40736]
gi|302471934|gb|EFL35027.1| DNA ligase, NAD-dependent [Streptomyces viridochromogenes DSM
40736]
Length = 731
Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 34/66 (51%)
Query: 52 TSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
T+ EA + L + H+ YY D P+ +D +D++ L+AL++++PEL D
Sbjct: 9 TTTVPAEAREKHARLAEQIEEHRFRYYVKDAPVVSDAEFDQLLRSLEALEDEYPELRTPD 68
Query: 112 HPWNTV 117
P V
Sbjct: 69 SPTQKV 74
>gi|51893963|ref|YP_076654.1| NAD-dependent DNA ligase [Symbiobacterium thermophilum IAM 14863]
gi|81388077|sp|Q67KI8|DNLJ_SYMTH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|51857652|dbj|BAD41810.1| NAD-dependent DNA ligase [Symbiobacterium thermophilum IAM 14863]
Length = 673
Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 32/65 (49%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + A + L++ HH+ YY + P +D +D + + L L+E FP+L D P
Sbjct: 1 MDRSWAERRIPELIETIRHHEYLYYVKNEPEISDAAFDELMQELKQLEEAFPDLRRPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|331013366|gb|EGH93422.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. tabaci ATCC
11528]
Length = 787
Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 24/60 (40%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L H Y+ LD P D YDR+ L AL+ + P L D P VG
Sbjct: 4 VETRILELRAELDEHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLVTPDSPTQRVG 63
>gi|330981936|gb|EGH80039.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. aptata str.
DSM 50252]
Length = 787
Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 24/60 (40%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L H Y+ LD P D YDR+ L AL+ + P L D P VG
Sbjct: 4 VETRILELRAELDQHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLVTPDSPTQRVG 63
>gi|120598462|ref|YP_963036.1| DNA ligase, NAD-dependent [Shewanella sp. W3-18-1]
gi|166216244|sp|A1RII7|DNLJ_SHESW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|120558555|gb|ABM24482.1| DNA ligase, NAD-dependent [Shewanella sp. W3-18-1]
Length = 685
Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 30/67 (44%)
Query: 52 TSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
+S A ++ L + H YY D P TD YDR+ + L L+ QFP+ D
Sbjct: 12 ADMSPENAQQVMQALSQSLNEHNIRYYVDDAPTITDSEYDRLMQCLIKLEAQFPQFIVAD 71
Query: 112 HPWNTVG 118
P VG
Sbjct: 72 SPTQRVG 78
>gi|328473436|gb|EGF44284.1| NAD-dependent DNA ligase LigA [Vibrio parahaemolyticus 10329]
Length = 670
Score = 99 bits (248), Expect = 9e-20, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 27/57 (47%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+E L + +H YY DNP D YDR+ L ++ Q P+L D P VG
Sbjct: 8 RLEELKESLHYHAVRYYVEDNPEIPDAEYDRLMRELLEIEAQHPDLVTVDSPSQRVG 64
>gi|220915846|ref|YP_002491150.1| DNA ligase, NAD-dependent [Anaeromyxobacter dehalogenans 2CP-1]
gi|254781252|sp|B8JD56|DNLJ_ANAD2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|219953700|gb|ACL64084.1| DNA ligase, NAD-dependent [Anaeromyxobacter dehalogenans 2CP-1]
Length = 687
Score = 99 bits (248), Expect = 9e-20, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 27/64 (42%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K +A L YY LD PL D YDR+ L AL+ + PEL D P
Sbjct: 1 MKKADASARARELRDRIRAADHAYYVLDQPLLADAEYDRLMHELQALEAEHPELVTADSP 60
Query: 114 WNTV 117
V
Sbjct: 61 TQRV 64
>gi|261345310|ref|ZP_05972954.1| DNA ligase, NAD-dependent [Providencia rustigianii DSM 4541]
gi|282566645|gb|EFB72180.1| DNA ligase, NAD-dependent [Providencia rustigianii DSM 4541]
Length = 678
Score = 99 bits (248), Expect = 9e-20, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L + HH+ Y+ LD P D YD++ + L L+ + PEL D P VG
Sbjct: 11 KQKIDSLKQQLRHHEYLYHVLDAPEIPDVEYDKLMQELKGLEAENPELITTDSPTQRVG 69
>gi|153838362|ref|ZP_01991029.1| DNA ligase, NAD-dependent [Vibrio parahaemolyticus AQ3810]
gi|149748221|gb|EDM59080.1| DNA ligase, NAD-dependent [Vibrio parahaemolyticus AQ3810]
Length = 670
Score = 99 bits (248), Expect = 9e-20, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 27/57 (47%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+E L + +H YY DNP D YDR+ L ++ Q P+L D P VG
Sbjct: 8 RLEELKESLHYHAVRYYVEDNPEIPDAEYDRLMRELLEIEAQHPDLVTVDSPSQRVG 64
>gi|258645494|ref|ZP_05732963.1| DNA ligase, NAD-dependent [Dialister invisus DSM 15470]
gi|260402847|gb|EEW96394.1| DNA ligase, NAD-dependent [Dialister invisus DSM 15470]
Length = 669
Score = 99 bits (248), Expect = 9e-20, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 33/65 (50%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ E + + E L K +H YY LD P TD +DR+ L L++++PE+ D P
Sbjct: 1 MVTAEIIKKAEELRKKLRYHSYLYYVLDKPEITDFEFDRLYRSLVDLEKEYPEIVTPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|28897574|ref|NP_797179.1| NAD-dependent DNA ligase LigA [Vibrio parahaemolyticus RIMD
2210633]
gi|260878266|ref|ZP_05890621.1| DNA ligase (NAD+) [Vibrio parahaemolyticus AN-5034]
gi|260895418|ref|ZP_05903914.1| DNA ligase (NAD+) [Vibrio parahaemolyticus Peru-466]
gi|260903353|ref|ZP_05911748.1| DNA ligase (NAD+) [Vibrio parahaemolyticus AQ4037]
gi|81728289|sp|Q87RJ4|DNLJ_VIBPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|28805786|dbj|BAC59063.1| DNA ligase [Vibrio parahaemolyticus RIMD 2210633]
gi|308088617|gb|EFO38312.1| DNA ligase (NAD+) [Vibrio parahaemolyticus Peru-466]
gi|308090169|gb|EFO39864.1| DNA ligase (NAD+) [Vibrio parahaemolyticus AN-5034]
gi|308107994|gb|EFO45534.1| DNA ligase (NAD+) [Vibrio parahaemolyticus AQ4037]
Length = 670
Score = 99 bits (248), Expect = 9e-20, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 27/57 (47%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+E L + +H YY DNP D YDR+ L ++ Q P+L D P VG
Sbjct: 8 RLEELKESLHYHAVRYYVEDNPEIPDAEYDRLMRELLEIEAQHPDLVTVDSPSQRVG 64
>gi|330973309|gb|EGH73375.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. aceris str.
M302273PT]
Length = 670
Score = 99 bits (248), Expect = 9e-20, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 24/60 (40%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L H Y+ LD P D YDR+ L AL+ + P L D P VG
Sbjct: 4 VETRILELRAELDQHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLVTPDSPTQRVG 63
>gi|292488952|ref|YP_003531839.1| DNA ligase [Erwinia amylovora CFBP1430]
gi|292900089|ref|YP_003539458.1| DNA ligase [Erwinia amylovora ATCC 49946]
gi|291199937|emb|CBJ47061.1| DNA ligase [Erwinia amylovora ATCC 49946]
gi|291554386|emb|CBA21816.1| DNA ligase [Erwinia amylovora CFBP1430]
Length = 670
Score = 99 bits (248), Expect = 9e-20, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ +L + H++ Y+ LD P D YDR+ L L+ Q+PEL D P VG
Sbjct: 7 KITHLRTLLRHYEHQYHVLDAPTVPDAEYDRLMGELRELETQYPELLTSDSPTQRVG 63
>gi|309389839|gb|ADO77719.1| DNA ligase, NAD-dependent [Halanaerobium praevalens DSM 2228]
Length = 670
Score = 99 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 53 SLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDH 112
+L+K +A ++ L + H+ Y+ LD+P +D +D++ + L L+ +FP+L ED
Sbjct: 3 NLNKEKASKKITALKEKIRKHEYKYFVLDDPSISDAEFDQLMQELIKLESEFPDLITEDS 62
Query: 113 PWNTVG 118
P VG
Sbjct: 63 PTQRVG 68
>gi|312173113|emb|CBX81368.1| DNA ligase [Erwinia amylovora ATCC BAA-2158]
Length = 670
Score = 99 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ +L + H++ Y+ LD P D YDR+ L L+ Q+PEL D P VG
Sbjct: 7 KITHLRTLLRHYEHQYHVLDAPTVPDAEYDRLMGELRELETQYPELLTSDSPTQRVG 63
>gi|260774893|ref|ZP_05883794.1| DNA ligase [Vibrio coralliilyticus ATCC BAA-450]
gi|260609148|gb|EEX35306.1| DNA ligase [Vibrio coralliilyticus ATCC BAA-450]
Length = 669
Score = 99 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
E + L + +H YY DNP D YDR+ L L+ + P+L D P
Sbjct: 3 QEIQERLNQLRETLHYHGVKYYVEDNPEVPDAEYDRLMRELLELEAEHPDLVSIDSPSQR 62
Query: 117 VG 118
VG
Sbjct: 63 VG 64
>gi|158421773|ref|YP_001523065.1| NAD-dependent DNA ligase [Azorhizobium caulinodans ORS 571]
gi|190359227|sp|A8IGY0|DNLJ_AZOC5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|158328662|dbj|BAF86147.1| NAD-dependent DNA ligase [Azorhizobium caulinodans ORS 571]
Length = 739
Score = 99 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 37/72 (51%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
+ K V+ LS EA E L + H YY+ D P+ +D YDR+ R + ++ +FP
Sbjct: 11 RDKAVSDLSATEASDEHAALSQEIASHDARYYQEDAPVISDADYDRLRRRYEDIEARFPA 70
Query: 107 LFDEDHPWNTVG 118
L ++D VG
Sbjct: 71 LKNDDSLSRKVG 82
>gi|159044058|ref|YP_001532852.1| DNA ligase [Dinoroseobacter shibae DFL 12]
gi|190359252|sp|A8LK52|DNLJ_DINSH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|157911818|gb|ABV93251.1| DNA ligase [Dinoroseobacter shibae DFL 12]
Length = 741
Score = 99 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 37/73 (50%)
Query: 46 DKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFP 105
D V +LS+ A E+ L ++ Y+R D P +D YD + +R A++ +FP
Sbjct: 37 DTYVAVEALSEAAARKELARLSELLARANAEYHRDDAPSLSDADYDALKQRNAAIEARFP 96
Query: 106 ELFDEDHPWNTVG 118
+L D P + VG
Sbjct: 97 DLKRGDSPSDQVG 109
>gi|330986172|gb|EGH84275.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. lachrymans
str. M301315]
Length = 787
Score = 99 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 24/60 (40%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L H Y+ LD P D YDR+ L AL+ + P L D P VG
Sbjct: 4 VETRILELRAELDEHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLVTPDSPTQRVG 63
>gi|257454409|ref|ZP_05619671.1| DNA ligase, NAD-dependent [Enhydrobacter aerosaccus SK60]
gi|257448175|gb|EEV23156.1| DNA ligase, NAD-dependent [Enhydrobacter aerosaccus SK60]
Length = 675
Score = 99 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 33/65 (50%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ ++ L+ H YY LDNPL D YD++ + L AL+ +P+L D P
Sbjct: 3 MNTAAITAQMRKLIAQLKQHNHAYYVLDNPLLEDSEYDQLRQELVALETAYPQLVQSDSP 62
Query: 114 WNTVG 118
N VG
Sbjct: 63 TNQVG 67
>gi|323705997|ref|ZP_08117567.1| DNA ligase, NAD-dependent [Thermoanaerobacterium xylanolyticum
LX-11]
gi|323534611|gb|EGB24392.1| DNA ligase, NAD-dependent [Thermoanaerobacterium xylanolyticum
LX-11]
Length = 659
Score = 99 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 27/60 (45%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L HH YY LD P +D YD + L L+E++P+ D P VG
Sbjct: 3 IEDRIKELRDKLNHHSYMYYVLDKPEISDYEYDMMMRELIELEEKYPQFKTPDSPTQRVG 62
>gi|261211985|ref|ZP_05926271.1| DNA ligase [Vibrio sp. RC341]
gi|260838593|gb|EEX65244.1| DNA ligase [Vibrio sp. RC341]
Length = 670
Score = 99 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 23/60 (38%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L + H YY D P D YDR+ L ++ Q PE D P VG
Sbjct: 4 VEQRLTELRQTLHEHGIRYYVEDAPTIPDAEYDRLMRELLDIEAQHPEWITPDSPSLRVG 63
>gi|116334213|ref|YP_795740.1| NAD-dependent DNA ligase [Lactobacillus brevis ATCC 367]
gi|122269104|sp|Q03Q13|DNLJ_LACBA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|116099560|gb|ABJ64709.1| NAD-dependent DNA ligase [Lactobacillus brevis ATCC 367]
Length = 676
Score = 99 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 34/70 (48%)
Query: 49 KKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF 108
K + +L+ +A E L L K YY D P D +YDRV RL AL+ FPE+
Sbjct: 4 KPIKTLTVEQAAEEAADLRPQLLEWGKQYYEADAPSVEDDVYDRVYARLVALETAFPEIV 63
Query: 109 DEDHPWNTVG 118
D P VG
Sbjct: 64 TPDSPTQRVG 73
>gi|330939980|gb|EGH43181.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. pisi str.
1704B]
Length = 731
Score = 99 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 24/60 (40%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L H Y+ LD P D YDR+ L AL+ + P L D P VG
Sbjct: 4 VETRILELRAELDQHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLVTPDSPTQRVG 63
>gi|320323491|gb|EFW79576.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. glycinea
str. B076]
Length = 787
Score = 99 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 24/60 (40%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L H Y+ LD P D YDR+ L AL+ + P L D P VG
Sbjct: 4 VETRILELRAELDEHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLVTPDSPTQRVG 63
>gi|269794376|ref|YP_003313831.1| DNA ligase, NAD-dependent [Sanguibacter keddieii DSM 10542]
gi|269096561|gb|ACZ20997.1| DNA ligase, NAD-dependent [Sanguibacter keddieii DSM 10542]
Length = 871
Score = 99 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 25/60 (41%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
A L + HQ YY D P +D YD + L ++E P+L D P VG
Sbjct: 44 ARTRWAELAETIEAHQFAYYVRDAPTVSDAEYDTLLRELGDIEEAHPQLRTPDSPTQRVG 103
>gi|71737941|ref|YP_274013.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|123775130|sp|Q48KR2|DNLJ_PSE14 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|71558494|gb|AAZ37705.1| DNA ligase, NAD-dependent [Pseudomonas syringae pv. phaseolicola
1448A]
gi|320329466|gb|EFW85458.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. glycinea
str. race 4]
Length = 787
Score = 99 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 24/60 (40%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L H Y+ LD P D YDR+ L AL+ + P L D P VG
Sbjct: 4 VETRILELRAELDEHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLVTPDSPTQRVG 63
>gi|330889906|gb|EGH22567.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. mori str.
301020]
Length = 787
Score = 99 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 24/60 (40%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L H Y+ LD P D YDR+ L AL+ + P L D P VG
Sbjct: 4 VETRILELRAELDEHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLVTPDSPTQRVG 63
>gi|307152955|ref|YP_003888339.1| NAD-dependent DNA ligase [Cyanothece sp. PCC 7822]
gi|306983183|gb|ADN15064.1| DNA ligase, NAD-dependent [Cyanothece sp. PCC 7822]
Length = 682
Score = 99 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 30/61 (49%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E VE L YY LDNP+ D +YD++ L+ L+ Q+PEL D P V
Sbjct: 7 EIQQRVEQLRSELQKASYAYYVLDNPIMEDAVYDQLYRELENLETQYPELITPDSPTQRV 66
Query: 118 G 118
G
Sbjct: 67 G 67
>gi|219850499|ref|YP_002464932.1| DNA ligase, NAD-dependent [Chloroflexus aggregans DSM 9485]
gi|254781282|sp|B8GAC1|DNLJ_CHLAD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|219544758|gb|ACL26496.1| DNA ligase, NAD-dependent [Chloroflexus aggregans DSM 9485]
Length = 681
Score = 99 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 29/64 (45%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ + + L + + YY LD+P+ +D YD + L AL+ PEL D P
Sbjct: 1 MNHIDVTQRINELRTLIRRYDYHYYVLDDPIVSDAEYDALMNELRALEAAHPELITPDSP 60
Query: 114 WNTV 117
V
Sbjct: 61 TQRV 64
>gi|116253034|ref|YP_768872.1| NAD-dependent DNA ligase LigA [Rhizobium leguminosarum bv. viciae
3841]
gi|123261370|sp|Q1ME47|DNLJ_RHIL3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|115257682|emb|CAK08780.1| putative DNA ligase [Rhizobium leguminosarum bv. viciae 3841]
Length = 718
Score = 99 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 36/68 (52%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V +L+ EA E+ L K HH Y+ D P +D YD + R DAL+ +FPEL E
Sbjct: 8 VDTLTIEEAAAELARLAKEIAHHDALYHGKDQPEISDADYDALKRRNDALEVRFPELIRE 67
Query: 111 DHPWNTVG 118
D P VG
Sbjct: 68 DSPSRHVG 75
>gi|253701546|ref|YP_003022735.1| DNA ligase, NAD-dependent [Geobacter sp. M21]
gi|251776396|gb|ACT18977.1| DNA ligase, NAD-dependent [Geobacter sp. M21]
Length = 668
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 28/65 (43%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K A +++L H + YY D P TD YD + L L+ P+L D P
Sbjct: 1 MDKTAAAQRIKWLSSEIERHNRLYYEQDMPEITDAEYDALFRELKELEASHPDLALPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TGRVG 65
>gi|188997338|ref|YP_001931589.1| DNA ligase, NAD-dependent [Sulfurihydrogenibium sp. YO3AOP1]
gi|254781435|sp|B2V5U1|DNLJ_SULSY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|188932405|gb|ACD67035.1| DNA ligase, NAD-dependent [Sulfurihydrogenibium sp. YO3AOP1]
Length = 704
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 34/68 (50%)
Query: 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
L+K EA VE L ++ H YY L P+ +D YD++ + L ++ ++PEL
Sbjct: 21 DAKKLTKEEAKKIVEDLREVIRFHDWRYYVLAQPVISDYEYDKLFKLLKDIEGKYPELIT 80
Query: 110 EDHPWNTV 117
D P V
Sbjct: 81 PDSPTQRV 88
>gi|91204173|emb|CAJ71826.1| strongly similar to DNA ligase [Candidatus Kuenenia
stuttgartiensis]
Length = 674
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 27/59 (45%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
++E L I +H YY +NP +D YD++ L L+ PEL D P V
Sbjct: 5 VKEKIEQLRCIIRYHDYKYYVENNPEISDYEYDQLLRELQNLESAHPELITPDSPTQRV 63
>gi|82523684|emb|CAI78466.1| NAD-dependent DNA ligase [uncultured candidate division WS3
bacterium]
Length = 667
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 27/59 (45%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
A V L ++ HH + YY P DG YD + L AL+ + PEL D P V
Sbjct: 7 ARARVAELRELIRHHDRKYYVDAAPEIADGEYDALMSELAALEREHPELVTADSPTRRV 65
>gi|167750769|ref|ZP_02422896.1| hypothetical protein EUBSIR_01747 [Eubacterium siraeum DSM 15702]
gi|167656204|gb|EDS00334.1| hypothetical protein EUBSIR_01747 [Eubacterium siraeum DSM 15702]
Length = 660
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 32/65 (49%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K + E E L K A H YY LD+P D YDR+ R+ ++ + PE+ E P
Sbjct: 1 MDKEQIKSEYEQLCKQAEQHNFNYYVLDDPTIEDDEYDRLMRRIKEIEAENPEIVSESSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQHVG 65
>gi|291613759|ref|YP_003523916.1| DNA ligase, NAD-dependent [Sideroxydans lithotrophicus ES-1]
gi|291583871|gb|ADE11529.1| DNA ligase, NAD-dependent [Sideroxydans lithotrophicus ES-1]
Length = 701
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 27/65 (41%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + L K + WYY D P D YD++ L AL+ Q PEL D P
Sbjct: 1 MINQDVTRRAALLRKQIAEYDYWYYVKDMPRIPDAEYDKLFRELQALEAQHPELLASDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|320157090|ref|YP_004189469.1| DNA ligase [Vibrio vulnificus MO6-24/O]
gi|319932402|gb|ADV87266.1| DNA ligase [Vibrio vulnificus MO6-24/O]
Length = 669
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 57 GEAMIE-VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
E+ + +E L + +H YY DNP D YDR+ L A++ + PE D P
Sbjct: 2 SESKQQYLEELKQQLHYHAVRYYVEDNPEIPDAEYDRMMRELMAIEAEHPEWISVDSPSQ 61
Query: 116 TVG 118
VG
Sbjct: 62 RVG 64
>gi|241760920|ref|ZP_04759009.1| DNA ligase, NAD-dependent [Zymomonas mobilis subsp. mobilis ATCC
10988]
gi|241374539|gb|EER64000.1| DNA ligase, NAD-dependent [Zymomonas mobilis subsp. mobilis ATCC
10988]
Length = 731
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 52 TSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
LS+ +A+IE+E L + H+ Y+ DNP D YD + R +++ FP+L D
Sbjct: 24 KDLSREQAVIELERLANLISHYDHLYHDKDNPAVPDSEYDALVLRNRRIEQFFPDLIRPD 83
Query: 112 HPWNTVG 118
P VG
Sbjct: 84 SPSKKVG 90
>gi|312882689|ref|ZP_07742426.1| NAD-dependent DNA ligase LigA [Vibrio caribbenthicus ATCC BAA-2122]
gi|309369650|gb|EFP97165.1| NAD-dependent DNA ligase LigA [Vibrio caribbenthicus ATCC BAA-2122]
Length = 670
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 29/62 (46%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
E ++ +L ++ H YY DNP D YDR+ L L+ Q PEL D P
Sbjct: 3 KEIETKLNHLRQLLHSHGIKYYVEDNPQIPDSEYDRLMRELLELESQHPELVSLDSPTQR 62
Query: 117 VG 118
VG
Sbjct: 63 VG 64
>gi|291530728|emb|CBK96313.1| DNA ligase, NAD-dependent [Eubacterium siraeum 70/3]
Length = 660
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 32/65 (49%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K + E E L K A H YY LD+P D YDR+ R+ ++ + PE+ E P
Sbjct: 1 MDKEQIKSEYEQLCKQAEQHNFNYYVLDDPTIEDDEYDRLMRRIKEIEAENPEIVSESSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQHVG 65
>gi|27363688|ref|NP_759216.1| NAD-dependent DNA ligase LigA [Vibrio vulnificus CMCP6]
gi|81449211|sp|Q8DFK5|DNLJ_VIBVU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|27359804|gb|AAO08743.1| DNA ligase, NAD-dependent [Vibrio vulnificus CMCP6]
Length = 669
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 57 GEAMIE-VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
E+ + +E L + +H YY DNP D YDR+ L A++ + PE D P
Sbjct: 2 SESKQQYLEELKQQLHYHAVRYYVEDNPEIPDAEYDRMMRELMAIEAEHPEWISVDSPSQ 61
Query: 116 TVG 118
VG
Sbjct: 62 RVG 64
>gi|37679166|ref|NP_933775.1| NAD-dependent DNA ligase LigA [Vibrio vulnificus YJ016]
gi|81758078|sp|Q7MMT5|DNLJ_VIBVY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|37197908|dbj|BAC93746.1| NAD-dependent DNA ligase [Vibrio vulnificus YJ016]
Length = 669
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 57 GEAMIE-VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
E+ + +E L + +H YY DNP D YDR+ L A++ + PE D P
Sbjct: 2 SESKQQYLEELKQQLHYHAVRYYVEDNPEIPDAEYDRMMRELMAIEAEHPEWISVDSPSQ 61
Query: 116 TVG 118
VG
Sbjct: 62 RVG 64
>gi|260753112|ref|YP_003226005.1| DNA ligase, NAD-dependent [Zymomonas mobilis subsp. mobilis NCIMB
11163]
gi|258552475|gb|ACV75421.1| DNA ligase, NAD-dependent [Zymomonas mobilis subsp. mobilis NCIMB
11163]
Length = 731
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 52 TSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
LS+ +A+IE+E L + H+ Y+ DNP D YD + R +++ FP+L D
Sbjct: 24 KDLSREQAVIELERLANLISHYDHLYHDKDNPAVPDSEYDALVLRNRRIEQFFPDLIRPD 83
Query: 112 HPWNTVG 118
P VG
Sbjct: 84 SPSKKVG 90
>gi|119476275|ref|ZP_01616626.1| DNA ligase [marine gamma proteobacterium HTCC2143]
gi|119450139|gb|EAW31374.1| DNA ligase [marine gamma proteobacterium HTCC2143]
Length = 781
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 27/59 (45%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++E L H Y+ LD P D YDR+ +L L+ +FP+ D P VG
Sbjct: 8 KQQIEELRSTVNLHNYRYHALDEPTVPDAEYDRLIRQLQVLEAKFPQFITNDSPTQRVG 66
>gi|303247047|ref|ZP_07333322.1| DNA ligase, NAD-dependent [Desulfovibrio fructosovorans JJ]
gi|302491473|gb|EFL51358.1| DNA ligase, NAD-dependent [Desulfovibrio fructosovorans JJ]
Length = 693
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 28/63 (44%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
+ +A + L H YY LD+P+ D YD + L L+ PEL D + P
Sbjct: 4 EKDAAARLRELRAQIHEHDYRYYVLDDPVIEDAAYDALYRELRKLETAHPELDDPNSPTK 63
Query: 116 TVG 118
VG
Sbjct: 64 RVG 66
>gi|237747723|ref|ZP_04578203.1| DNA ligase [Oxalobacter formigenes OXCC13]
gi|229379085|gb|EEO29176.1| DNA ligase [Oxalobacter formigenes OXCC13]
Length = 685
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 26/59 (44%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L + YY LD P+ D YDR+ +L L++ PEL D P VG
Sbjct: 16 AEQAARLRSEIERYNIAYYVLDAPIVPDSEYDRLFRQLQELEKAHPELVVPDSPTQRVG 74
>gi|224369899|ref|YP_002604063.1| LigA1 [Desulfobacterium autotrophicum HRM2]
gi|254781310|sp|C0QJ86|DNLJ_DESAH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|223692616|gb|ACN15899.1| LigA1 [Desulfobacterium autotrophicum HRM2]
Length = 685
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 33/64 (51%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S E L + H Y+ D+P+ +DG YDR+ +RL A++ QFPEL D P
Sbjct: 7 SFDRIKKEARLLREQLHVHNINYHVKDDPVISDGEYDRMMQRLIAIETQFPELSTPDSPT 66
Query: 115 NTVG 118
+G
Sbjct: 67 RRIG 70
>gi|323140467|ref|ZP_08075395.1| DNA ligase (NAD+) [Phascolarctobacterium sp. YIT 12067]
gi|322415035|gb|EFY05826.1| DNA ligase (NAD+) [Phascolarctobacterium sp. YIT 12067]
Length = 679
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
+ + E + L + H++ YY LD P TD YDR+ RL L+ ++P+ D P
Sbjct: 11 RAADLAEADKLRREIRHNEYLYYVLDAPEITDAEYDRMMVRLRELEARYPDSIPADSPTQ 70
Query: 116 TVG 118
VG
Sbjct: 71 RVG 73
>gi|153001196|ref|YP_001366877.1| DNA ligase, NAD-dependent [Shewanella baltica OS185]
gi|166216241|sp|A6WPS5|DNLJ_SHEB8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|151365814|gb|ABS08814.1| DNA ligase, NAD-dependent [Shewanella baltica OS185]
Length = 685
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 30/67 (44%)
Query: 52 TSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
++ A ++ L + H YY D P TD YDR+ +RL L+ +P L D
Sbjct: 12 EDVTPENASQVMQALSQSLNEHNIRYYVDDAPSITDSEYDRLMQRLLKLEALYPHLIVAD 71
Query: 112 HPWNTVG 118
P VG
Sbjct: 72 SPTQRVG 78
>gi|86742328|ref|YP_482728.1| DNA ligase, NAD-dependent [Frankia sp. CcI3]
gi|123750794|sp|Q2J6U3|DNLJ_FRASC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|86569190|gb|ABD12999.1| DNA ligase, NAD-dependent [Frankia sp. CcI3]
Length = 706
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 27/52 (51%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
L + H YY LD+P +D YDR+ L AL+E+ P+L D P V
Sbjct: 29 LARELDEHAYRYYVLDSPTISDAEYDRLMAELAALEERHPDLRTPDSPTQKV 80
>gi|149374973|ref|ZP_01892746.1| DNA ligase, NAD-dependent [Marinobacter algicola DG893]
gi|149360862|gb|EDM49313.1| DNA ligase, NAD-dependent [Marinobacter algicola DG893]
Length = 676
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 54 LSKG--EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
++K + + L I H YY LD+P D YDR+ L L+ Q+P++ D
Sbjct: 1 MTKASPDVISRAGELRDIITEHNYQYYVLDDPRVPDAEYDRLFRELQDLETQYPDIVTPD 60
Query: 112 HPWNTVG 118
P VG
Sbjct: 61 TPTRRVG 67
>gi|319426762|gb|ADV54836.1| DNA ligase, NAD-dependent [Shewanella putrefaciens 200]
Length = 685
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 30/67 (44%)
Query: 52 TSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
+S A ++ L + H YY D P TD YDR+ + L L+ QFP+ D
Sbjct: 12 ADMSPENAQQVMQALSQSLNEHNIRYYVDDAPSITDSEYDRLMQCLIKLEAQFPQFIVAD 71
Query: 112 HPWNTVG 118
P VG
Sbjct: 72 SPTQRVG 78
>gi|289626390|ref|ZP_06459344.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. aesculi
str. NCPPB3681]
gi|330866315|gb|EGH01024.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. aesculi
str. 0893_23]
Length = 787
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 24/60 (40%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L H YY LD P D YDR+ L AL+ + P L D P VG
Sbjct: 4 VETRILELRAELDEHNYRYYVLDEPSIPDVEYDRLFHELKALEVENPHLVTPDSPTQRVG 63
>gi|304411949|ref|ZP_07393560.1| DNA ligase, NAD-dependent [Shewanella baltica OS183]
gi|307303283|ref|ZP_07583038.1| DNA ligase, NAD-dependent [Shewanella baltica BA175]
gi|304349809|gb|EFM14216.1| DNA ligase, NAD-dependent [Shewanella baltica OS183]
gi|306913643|gb|EFN44065.1| DNA ligase, NAD-dependent [Shewanella baltica BA175]
Length = 685
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 30/67 (44%)
Query: 52 TSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
++ A ++ L + H YY D P TD YDR+ +RL L+ +P L D
Sbjct: 12 EDVTPENASQVMQALSQSLNEHNIRYYVDDAPSITDSEYDRLMQRLLKLEALYPHLIVAD 71
Query: 112 HPWNTVG 118
P VG
Sbjct: 72 SPTQRVG 78
>gi|160875869|ref|YP_001555185.1| DNA ligase, NAD-dependent [Shewanella baltica OS195]
gi|190359285|sp|A9L5Z1|DNLJ_SHEB9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|160861391|gb|ABX49925.1| DNA ligase, NAD-dependent [Shewanella baltica OS195]
gi|315268060|gb|ADT94913.1| DNA ligase, NAD-dependent [Shewanella baltica OS678]
Length = 685
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 30/67 (44%)
Query: 52 TSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
++ A ++ L + H YY D P TD YDR+ +RL L+ +P L D
Sbjct: 12 EDVTPENASQVMQALSQSLNEHNIRYYVDDAPSITDSEYDRLMQRLLKLEALYPHLIVAD 71
Query: 112 HPWNTVG 118
P VG
Sbjct: 72 SPTQRVG 78
>gi|217972882|ref|YP_002357633.1| DNA ligase, NAD-dependent [Shewanella baltica OS223]
gi|254781416|sp|B8EEK5|DNLJ_SHEB2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|217498017|gb|ACK46210.1| DNA ligase, NAD-dependent [Shewanella baltica OS223]
Length = 685
Score = 99.2 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 30/67 (44%)
Query: 52 TSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
++ A ++ L + H YY D P TD YDR+ +RL L+ +P L D
Sbjct: 12 EDVTPENASQVMQALSQSLNEHNIRYYVDDAPSITDSEYDRLMQRLLKLEALYPHLIVAD 71
Query: 112 HPWNTVG 118
P VG
Sbjct: 72 SPTQRVG 78
>gi|308172548|ref|YP_003919253.1| DNA ligase [Bacillus amyloliquefaciens DSM 7]
gi|307605412|emb|CBI41783.1| DNA ligase [Bacillus amyloliquefaciens DSM 7]
gi|328910657|gb|AEB62253.1| DNA ligase [Bacillus amyloliquefaciens LL3]
Length = 669
Score = 99.2 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K A + L + + YY LD P D YDR+ + L A++E+ PEL D P
Sbjct: 2 MDKETAKHRADELRRTIDQYSYEYYTLDEPSVPDSEYDRLMQELIAIEEEHPELRTPDSP 61
Query: 114 WNTVG 118
VG
Sbjct: 62 TQRVG 66
>gi|46580019|ref|YP_010827.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris str.
Hildenborough]
gi|81404693|sp|Q72BM7|DNLJ_DESVH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|46449435|gb|AAS96086.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris str.
Hildenborough]
Length = 799
Score = 99.2 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 27/63 (42%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
EA L H + YY LD P +D YD + L L+ ++P L DE P
Sbjct: 36 PEEARQRAAQLRADLERHNRLYYELDTPEISDAEYDALYRELVGLETRWPALRDEASPTQ 95
Query: 116 TVG 118
VG
Sbjct: 96 RVG 98
>gi|332532506|ref|ZP_08408384.1| DNA ligase [Pseudoalteromonas haloplanktis ANT/505]
gi|332038149|gb|EGI74596.1| DNA ligase [Pseudoalteromonas haloplanktis ANT/505]
Length = 672
Score = 99.2 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 26/58 (44%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ +L H YY LD P D YDR+ L AL+ Q PE D P VG
Sbjct: 7 EQINHLRTTLEQHNYNYYVLDTPSIPDSEYDRLLRELSALEMQHPEFLTADSPTQKVG 64
>gi|328552313|gb|AEB22805.1| NAD-dependent DNA ligase LigA [Bacillus amyloliquefaciens TA208]
Length = 668
Score = 99.2 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K A + L + + YY LD P D YDR+ + L A++E+ PEL D P
Sbjct: 1 MDKETAKHRADELRRTIDQYSYEYYTLDEPSVPDSEYDRLMQELIAIEEEHPELRTPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|310768269|gb|ADP13219.1| NAD-dependent DNA ligase LigA [Erwinia sp. Ejp617]
Length = 670
Score = 99.2 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 29/62 (46%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ +L + H++ Y+ LD P D YDR+ L L+ Q PEL D P
Sbjct: 2 ESVQDKITHLRTLLRHYEYQYHVLDAPAVPDAEYDRLMGELRELEAQHPELLTSDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|193213809|ref|YP_001995008.1| NAD-dependentDNA ligase [Chloroherpeton thalassium ATCC 35110]
gi|254781288|sp|B3QSH0|DNLJ_CHLT3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|193087286|gb|ACF12561.1| DNA ligase, NAD-dependent [Chloroherpeton thalassium ATCC 35110]
Length = 684
Score = 99.2 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++K EA ++ L + H YY L P +D +D + L L+ ++P+L D P
Sbjct: 1 MNKSEAEAKIRALRREINEHNYNYYNLAKPKISDYDFDALLRTLAELEAKYPDLVTPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SQRVG 65
>gi|209527955|ref|ZP_03276440.1| DNA ligase, NAD-dependent [Arthrospira maxima CS-328]
gi|209491614|gb|EDZ91984.1| DNA ligase, NAD-dependent [Arthrospira maxima CS-328]
Length = 680
Score = 99.2 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 29/61 (47%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E ++E L YY LD P DG+YDR+ L L+ Q+PEL D P V
Sbjct: 12 EISQKLEQLRLTVQRASYAYYVLDAPTMEDGVYDRLYRELQELETQYPELISPDSPTQRV 71
Query: 118 G 118
G
Sbjct: 72 G 72
>gi|313114130|ref|ZP_07799682.1| DNA ligase, NAD-dependent [Faecalibacterium cf. prausnitzii
KLE1255]
gi|310623539|gb|EFQ06942.1| DNA ligase, NAD-dependent [Faecalibacterium cf. prausnitzii
KLE1255]
Length = 666
Score = 99.2 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 30/68 (44%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
+ L +A VE L + + + YY D P D YD ++ L L+ QFP+L
Sbjct: 1 MELLELEQAKKRVEELRAVIEKNNRLYYDQDAPELEDFEYDALTRELKELEAQFPQLVTA 60
Query: 111 DHPWNTVG 118
P VG
Sbjct: 61 SSPTQKVG 68
>gi|226305867|ref|YP_002765827.1| NAD(+)-dependent DNA ligase [Rhodococcus erythropolis PR4]
gi|254781402|sp|C0ZXK3|DNLJ_RHOE4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|226184984|dbj|BAH33088.1| NAD(+)-dependent DNA ligase [Rhodococcus erythropolis PR4]
Length = 700
Score = 99.2 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 37/74 (50%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
+ + + EA + L + HQ YY D P+ +DG +D + +L+AL+EQ+
Sbjct: 1 MTETADAMQPAPNEAREQWTELAEEVRQHQFRYYVRDAPVISDGAFDTLLGQLNALEEQY 60
Query: 105 PELFDEDHPWNTVG 118
P+L D P VG
Sbjct: 61 PDLRTPDSPTQLVG 74
>gi|330897709|gb|EGH29128.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. japonica
str. M301072PT]
Length = 657
Score = 99.2 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 24/60 (40%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L H Y+ LD P D YDR+ L AL+ + P L D P VG
Sbjct: 4 VETRILELRAQLDEHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLVTPDSPTQRVG 63
>gi|302185110|ref|ZP_07261783.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. syringae
642]
Length = 787
Score = 99.2 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 24/60 (40%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L H Y+ LD P D YDR+ L AL+ + P L D P VG
Sbjct: 4 VETRILELRAQLDEHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLVTPDSPTQRVG 63
>gi|294504743|ref|YP_003568805.1| DNA ligase [Yersinia pestis Z176003]
gi|262362805|gb|ACY59526.1| DNA ligase [Yersinia pestis D106004]
gi|262366729|gb|ACY63286.1| DNA ligase [Yersinia pestis D182038]
gi|294355202|gb|ADE65543.1| DNA ligase [Yersinia pestis Z176003]
Length = 656
Score = 99.2 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 26/49 (53%)
Query: 70 ALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH+ Y+ LD P D YDR+ ++L L+ Q PEL D P VG
Sbjct: 1 MRHHEHQYHVLDAPEIPDAEYDRMMQQLRDLEAQHPELVTNDSPTQRVG 49
>gi|311233982|gb|ADP86836.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris RCH1]
Length = 818
Score = 99.2 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 27/63 (42%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
EA L H + YY LD P +D YD + L L+ ++P L DE P
Sbjct: 55 PEEARQRAAQLRADLERHNRLYYELDTPEISDAEYDALYRELVGLETRWPALRDEASPTQ 114
Query: 116 TVG 118
VG
Sbjct: 115 RVG 117
>gi|297202535|ref|ZP_06919932.1| DNA ligase, NAD-dependent [Streptomyces sviceus ATCC 29083]
gi|197709937|gb|EDY53971.1| DNA ligase, NAD-dependent [Streptomyces sviceus ATCC 29083]
Length = 730
Score = 99.2 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 35/69 (50%)
Query: 49 KKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF 108
K+ + EA + L + H+ YY D P+ +D +D++ L+AL++++PEL
Sbjct: 5 KQAETTVPSEAREKHAQLAEQIEEHRFRYYVNDAPVVSDADFDKLLRSLEALEDEYPELR 64
Query: 109 DEDHPWNTV 117
D P V
Sbjct: 65 TPDSPTQKV 73
>gi|329121050|ref|ZP_08249681.1| NAD-dependent DNA ligase LigA [Dialister micraerophilus DSM 19965]
gi|327471212|gb|EGF16666.1| NAD-dependent DNA ligase LigA [Dialister micraerophilus DSM 19965]
Length = 666
Score = 99.2 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 33/65 (50%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ E + +V+ L + +H YY LD P +D +D++ L + ++PEL +D P
Sbjct: 1 MITNEIISKVKKLREELRYHSYLYYVLDKPEISDFEFDKMYRELVDFESKYPELITQDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|240168924|ref|ZP_04747583.1| NAD-dependent DNA ligase LigA [Mycobacterium kansasii ATCC 12478]
Length = 683
Score = 99.2 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 31/57 (54%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ + L + HQ YY D P+ TD +D + RL+ L+EQ+PEL D P VG
Sbjct: 4 QWQDLAEQVREHQFRYYVRDAPIITDAEFDELLRRLEVLEEQYPELRTPDSPTQLVG 60
>gi|332529208|ref|ZP_08405172.1| DNA ligase [Hylemonella gracilis ATCC 19624]
gi|332041431|gb|EGI77793.1| DNA ligase [Hylemonella gracilis ATCC 19624]
Length = 738
Score = 99.2 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 23/49 (46%)
Query: 69 IALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
HH YY LD P D YDR+ + L A++ PEL D P V
Sbjct: 31 QLHHHAHRYYVLDAPEIPDAEYDRLFQELQAIEAAHPELRTPDSPTQRV 79
>gi|254489942|ref|ZP_05103137.1| DNA ligase, NAD-dependent [Methylophaga thiooxidans DMS010]
gi|224465027|gb|EEF81281.1| DNA ligase, NAD-dependent [Methylophaga thiooxydans DMS010]
Length = 673
Score = 99.2 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 27/61 (44%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E L ++ H+ YY DNP D YDR+ L L++ PEL D P V
Sbjct: 6 EVQQRAATLRELINHYNYLYYVTDNPEVPDAEYDRLFSELQQLEQTHPELLTADSPTQRV 65
Query: 118 G 118
G
Sbjct: 66 G 66
>gi|323136604|ref|ZP_08071685.1| DNA ligase, NAD-dependent [Methylocystis sp. ATCC 49242]
gi|322397921|gb|EFY00442.1| DNA ligase, NAD-dependent [Methylocystis sp. ATCC 49242]
Length = 705
Score = 99.2 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 32/68 (47%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V LS EA E L + + + YYR D PL D YD R +AL++ FPEL
Sbjct: 12 VDELSPAEARAEHARLGEDIARYDEAYYREDAPLVPDAEYDAARRRYEALEKAFPELVTP 71
Query: 111 DHPWNTVG 118
+ VG
Sbjct: 72 ESLTRKVG 79
>gi|330879787|gb|EGH13936.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. glycinea
str. race 4]
Length = 347
Score = 99.2 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 24/60 (40%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L H Y+ LD P D YDR+ L AL+ + P L D P VG
Sbjct: 4 VETRILELRAELDEHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLVTPDSPTQRVG 63
>gi|21673293|ref|NP_661358.1| DNA ligase, NAD-dependent [Chlorobium tepidum TLS]
gi|81791793|sp|Q8KF74|DNLJ_CHLTE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|21646383|gb|AAM71700.1| DNA ligase, NAD-dependent [Chlorobium tepidum TLS]
Length = 674
Score = 99.2 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 33/65 (50%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K +A E+ L H + YY P +D +D++ +RL L+++FPEL D P
Sbjct: 1 MDKAKAQQEIGKLRAEIERHNRLYYLEAKPEISDFEFDKLLKRLIMLEKEFPELVTPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SQRVG 65
>gi|294140434|ref|YP_003556412.1| DNA ligase, NAD-dependent [Shewanella violacea DSS12]
gi|293326903|dbj|BAJ01634.1| DNA ligase, NAD-dependent [Shewanella violacea DSS12]
Length = 683
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 30/73 (41%)
Query: 46 DKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFP 105
DK + S + E+ L I H YY D P D YDR+ ++L L+ P
Sbjct: 4 DKIQDHASFNIQAVAQEIAELTDILNGHNYCYYVDDAPSIPDAEYDRLLKQLKVLETAHP 63
Query: 106 ELFDEDHPWNTVG 118
E D P VG
Sbjct: 64 EYCFPDSPTQRVG 76
>gi|317489959|ref|ZP_07948451.1| DNA ligase [Eggerthella sp. 1_3_56FAA]
gi|316910957|gb|EFV32574.1| DNA ligase [Eggerthella sp. 1_3_56FAA]
Length = 708
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 25/59 (42%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L + HH YY D P +D +D + L L+ PEL D P VG
Sbjct: 22 AARIDALRREIEHHSYLYYANDAPEISDAAFDSLMRELRELEAAHPELIDPSSPTQRVG 80
>gi|257054924|ref|YP_003132756.1| NAD-dependent DNA ligase LigA [Saccharomonospora viridis DSM 43017]
gi|256584796|gb|ACU95929.1| DNA ligase, NAD-dependent [Saccharomonospora viridis DSM 43017]
Length = 731
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 8/103 (7%)
Query: 24 WKKLLTLEAKFLPNKRALESWLDKAKKVTSLSK--------GEAMIEVEYLVKIALHHQK 75
+LL + ++ L L S + + + E LV+ HQ
Sbjct: 3 LTRLLIVSSEDLTASEELASVAESDPEAARTTPVEGIQDVPAEVRERHSALVEEIRGHQF 62
Query: 76 WYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P +D +D++ L+ L+ + P L D P TVG
Sbjct: 63 RYYVLDAPTISDAEFDQLMRDLERLEAEHPALVSPDSPTQTVG 105
>gi|225377122|ref|ZP_03754343.1| hypothetical protein ROSEINA2194_02767 [Roseburia inulinivorans DSM
16841]
gi|225211027|gb|EEG93381.1| hypothetical protein ROSEINA2194_02767 [Roseburia inulinivorans DSM
16841]
Length = 668
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K A + L K +H YY D+P +D YD + + L L+++ PEL D P
Sbjct: 1 MKKMSAEERIAELKKTLEYHIDRYYNQDSPEISDYEYDMMMQELKNLEKEHPELVTPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|257791950|ref|YP_003182556.1| DNA ligase, NAD-dependent [Eggerthella lenta DSM 2243]
gi|325829905|ref|ZP_08163363.1| DNA ligase (NAD+) [Eggerthella sp. HGA1]
gi|257475847|gb|ACV56167.1| DNA ligase, NAD-dependent [Eggerthella lenta DSM 2243]
gi|325488072|gb|EGC90509.1| DNA ligase (NAD+) [Eggerthella sp. HGA1]
Length = 708
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 25/59 (42%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L + HH YY D P +D +D + L L+ PEL D P VG
Sbjct: 22 AARIDALRREIEHHSYLYYANDAPEISDAAFDSLMRELRELEAAHPELIDPSSPTQRVG 80
>gi|261366975|ref|ZP_05979858.1| DNA ligase, NAD-dependent [Subdoligranulum variabile DSM 15176]
gi|282571093|gb|EFB76628.1| DNA ligase, NAD-dependent [Subdoligranulum variabile DSM 15176]
Length = 661
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + +A E L + + + YY D P D YD ++ L A++ +FP+L + P
Sbjct: 1 MEREQAQKRAEELRAVIEKNNRLYYDQDAPELEDFEYDALTRELKAIETEFPDLVTPESP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQHVG 65
>gi|71064896|ref|YP_263623.1| NAD dependent DNA ligase [Psychrobacter arcticus 273-4]
gi|123734475|sp|Q4FUW9|DNLJ_PSYA2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|71037881|gb|AAZ18189.1| probable NAD dependent DNA ligase [Psychrobacter arcticus 273-4]
Length = 691
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
+D AK +T+ + ++ + H YY LDNP+ D YD++ L L+E++
Sbjct: 13 IDTAKPITN--DDAIVTQMRTFIDTLKQHNYAYYVLDNPILEDSEYDQLRRSLLELEEEY 70
Query: 105 PELFDEDHPWNTVG 118
P+L D P N VG
Sbjct: 71 PDLVQPDSPINQVG 84
>gi|320334549|ref|YP_004171260.1| DNA ligase [Deinococcus maricopensis DSM 21211]
gi|319755838|gb|ADV67595.1| DNA ligase [Deinococcus maricopensis DSM 21211]
Length = 671
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 24/59 (40%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L++ HH + YY D P +D YD + L A + PE + P VG
Sbjct: 3 EARYRELIQTIQHHNRLYYEQDTPEISDAEYDALMRELRAAEAAHPEWITPESPTQKVG 61
>gi|197121145|ref|YP_002133096.1| DNA ligase, NAD-dependent [Anaeromyxobacter sp. K]
gi|254781542|sp|B4UDH6|DNLJ_ANASK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|196170994|gb|ACG71967.1| DNA ligase, NAD-dependent [Anaeromyxobacter sp. K]
Length = 687
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 26/64 (40%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K +A L YY LD PL D YDR+ L AL+ PEL D P
Sbjct: 1 MKKADAPARARELRDRIRAADHAYYVLDQPLLADAEYDRLMHELQALEADHPELVTADSP 60
Query: 114 WNTV 117
V
Sbjct: 61 TQRV 64
>gi|94263030|ref|ZP_01286849.1| DNA ligase (NAD+) [delta proteobacterium MLMS-1]
gi|93456573|gb|EAT06681.1| DNA ligase (NAD+) [delta proteobacterium MLMS-1]
Length = 678
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 68 KIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ +H YY LD+P +DG YDR+ L+ L+ ++PEL D P VG
Sbjct: 22 ELIAYHNHRYYVLDDPELSDGEYDRLFRELEELESRWPELVTADSPSRRVG 72
>gi|256847801|ref|ZP_05553246.1| DNA ligase, NAD-dependent [Lactobacillus coleohominis 101-4-CHN]
gi|256715490|gb|EEU30466.1| DNA ligase, NAD-dependent [Lactobacillus coleohominis 101-4-CHN]
Length = 674
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 52 TSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
++ EA E+ L + + K YY DNP D +YDR +RL L+ +FPEL D
Sbjct: 4 EQITLAEAKKEIGPLRQQLIQWGKEYYEQDNPSVEDYVYDRQYQRLVELEARFPELVTPD 63
Query: 112 HPWNTVG 118
P VG
Sbjct: 64 SPTQRVG 70
>gi|315127017|ref|YP_004069020.1| NAD-dependent DNA ligase [Pseudoalteromonas sp. SM9913]
gi|315015531|gb|ADT68869.1| NAD-dependent DNA ligase [Pseudoalteromonas sp. SM9913]
Length = 673
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 25/58 (43%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ +L H YY LD P D YDR+ L L+ Q PE D P VG
Sbjct: 7 EQINHLRTTLEQHNYSYYVLDTPSIPDAEYDRLLRTLSELETQHPEFLTADSPTQKVG 64
>gi|215918993|ref|NP_819574.2| NAD-dependent DNA ligase [Coxiella burnetii RSA 493]
gi|218512010|sp|Q83DZ6|DNLJ_COXBU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|206583878|gb|AAO90088.2| NAD-dependent DNA ligase [Coxiella burnetii RSA 493]
Length = 673
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 27/63 (42%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
+ +E L + H YY L P D +YD + L+ L++++PE P
Sbjct: 7 PAKIQKRIERLRQEINDHNYRYYVLSQPTIPDSVYDELFHELEKLEKKYPETITPSSPTQ 66
Query: 116 TVG 118
VG
Sbjct: 67 RVG 69
>gi|161598439|ref|YP_120478.2| NAD-dependent DNA ligase LigA [Nocardia farcinica IFM 10152]
Length = 710
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 30/61 (49%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E + + L + HQ YY D P+ +DG +D + L L+++ P+L D P V
Sbjct: 25 EDRVRWQRLAEEVREHQFRYYVRDAPIISDGEFDALLRELQELEDRHPDLRTPDSPTQLV 84
Query: 118 G 118
G
Sbjct: 85 G 85
>gi|269960659|ref|ZP_06175031.1| DNA ligase [Vibrio harveyi 1DA3]
gi|269834736|gb|EEZ88823.1| DNA ligase [Vibrio harveyi 1DA3]
Length = 670
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 28/62 (45%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ +E L + +H YY DNP D YDR+ L ++ + PEL D P
Sbjct: 3 ESVLQRLEELKESLHYHAVRYYVEDNPEIPDAEYDRMMRELLDIEAEHPELVTVDSPSQR 62
Query: 117 VG 118
VG
Sbjct: 63 VG 64
>gi|296135970|ref|YP_003643212.1| DNA ligase, NAD-dependent [Thiomonas intermedia K12]
gi|295796092|gb|ADG30882.1| DNA ligase, NAD-dependent [Thiomonas intermedia K12]
Length = 688
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 22/62 (35%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ L YY LD PL D YD + L ++ PEL D P
Sbjct: 8 AQPAERAAQLRAEIARLDHAYYVLDAPLAPDADYDALFRELQQIEADHPELRTPDSPTQR 67
Query: 117 VG 118
VG
Sbjct: 68 VG 69
>gi|229493359|ref|ZP_04387148.1| DNA ligase, NAD-dependent [Rhodococcus erythropolis SK121]
gi|229319675|gb|EEN85507.1| DNA ligase, NAD-dependent [Rhodococcus erythropolis SK121]
Length = 700
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 37/74 (50%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
+ + + EA + L + HQ YY D P+ +DG +D + +L+AL+EQ+
Sbjct: 1 MTETADAMQPAPNEAREQWTELAEEVRQHQFRYYVRDAPVISDGAFDTLLGQLNALEEQY 60
Query: 105 PELFDEDHPWNTVG 118
P+L D P VG
Sbjct: 61 PDLRTPDSPTQLVG 74
>gi|160945211|ref|ZP_02092437.1| hypothetical protein FAEPRAM212_02730 [Faecalibacterium prausnitzii
M21/2]
gi|158442942|gb|EDP19947.1| hypothetical protein FAEPRAM212_02730 [Faecalibacterium prausnitzii
M21/2]
Length = 671
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 30/68 (44%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
+ L +A V+ L I + + YY D P D YD ++ L L+ QFP+L
Sbjct: 1 MEYLELEQAKKRVKELRAIIEKNNRLYYDQDAPELEDFEYDALTRELKELEAQFPQLVTA 60
Query: 111 DHPWNTVG 118
P VG
Sbjct: 61 ASPTQKVG 68
>gi|220920535|ref|YP_002495836.1| DNA ligase, NAD-dependent [Methylobacterium nodulans ORS 2060]
gi|254781366|sp|B8ICE5|DNLJ_METNO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|219945141|gb|ACL55533.1| DNA ligase, NAD-dependent [Methylobacterium nodulans ORS 2060]
Length = 829
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 37/73 (50%)
Query: 46 DKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFP 105
+A+ V ++ +A E L H + Y+ D P+ +D YD + RL+A++E+FP
Sbjct: 6 SRARPVEEMTAAQAREAHESLSAEIAEHDRRYHGEDAPIISDAEYDALRRRLEAIEERFP 65
Query: 106 ELFDEDHPWNTVG 118
EL +VG
Sbjct: 66 ELAGTGAASVSVG 78
>gi|312877316|ref|ZP_07737282.1| DNA ligase, NAD-dependent [Caldicellulosiruptor lactoaceticus 6A]
gi|311795879|gb|EFR12242.1| DNA ligase, NAD-dependent [Caldicellulosiruptor lactoaceticus 6A]
Length = 673
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 28/60 (46%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV + +H YY DNP +D YD + L L++Q+PE D P VG
Sbjct: 5 IKKRIRELVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYVFPDSPTQRVG 64
>gi|312793814|ref|YP_004026737.1| DNA ligase, nad-dependent [Caldicellulosiruptor kristjanssonii
177R1B]
gi|312180954|gb|ADQ41124.1| DNA ligase, NAD-dependent [Caldicellulosiruptor kristjanssonii
177R1B]
Length = 673
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 28/60 (46%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV + +H YY DNP +D YD + L L++Q+PE D P VG
Sbjct: 5 IKKRIRELVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYVFPDSPTQRVG 64
>gi|260684853|ref|YP_003216138.1| DNA ligase [Clostridium difficile CD196]
gi|260688511|ref|YP_003219645.1| DNA ligase [Clostridium difficile R20291]
gi|260211016|emb|CBA66332.1| DNA ligase [Clostridium difficile CD196]
gi|260214528|emb|CBE07046.1| DNA ligase [Clostridium difficile R20291]
Length = 677
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K E+ L++ +H + YY D+P +D YD++ + L +L+E+ PEL D P
Sbjct: 1 MQKVSVKDEINKLIETINYHNERYYNQDSPEISDYEYDKLMKELISLEEEHPELKRIDSP 60
Query: 114 WNTVG 118
N VG
Sbjct: 61 TNRVG 65
>gi|126729669|ref|ZP_01745482.1| DNA ligase, NAD-dependent [Sagittula stellata E-37]
gi|126709788|gb|EBA08841.1| DNA ligase, NAD-dependent [Sagittula stellata E-37]
Length = 714
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 37/80 (46%)
Query: 39 RALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLD 98
RA E +V +++ +A E+ L I + Y+ D P TD YDR+ R
Sbjct: 4 RASEELGMNDTEVGQMTEDQAREELRALSDILGQANRAYHAEDAPELTDAEYDRLKRRNA 63
Query: 99 ALQEQFPELFDEDHPWNTVG 118
++ +FP+L D P VG
Sbjct: 64 EIEARFPQLKLADSPSEQVG 83
>gi|302871618|ref|YP_003840254.1| DNA ligase, NAD-dependent [Caldicellulosiruptor obsidiansis OB47]
gi|302574477|gb|ADL42268.1| DNA ligase, NAD-dependent [Caldicellulosiruptor obsidiansis OB47]
Length = 673
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 28/60 (46%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV + +H YY DNP +D YD + L L++Q+PE D P VG
Sbjct: 5 IKKRIRELVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYVLPDSPTQRVG 64
>gi|107028796|ref|YP_625891.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia AU 1054]
gi|105897960|gb|ABF80918.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia AU 1054]
Length = 746
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 7/74 (9%)
Query: 52 TSLSKGEAM-------IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S+++ +A +L YY LD P D YDR+ L L+
Sbjct: 54 ASMARTQAEPPASQPDARAAWLRDQLERANYAYYVLDQPDLPDAEYDRLFRELQQLETDH 113
Query: 105 PELFDEDHPWNTVG 118
PEL D P VG
Sbjct: 114 PELVTPDSPTQRVG 127
>gi|312127350|ref|YP_003992224.1| DNA ligase, nad-dependent [Caldicellulosiruptor hydrothermalis 108]
gi|311777369|gb|ADQ06855.1| DNA ligase, NAD-dependent [Caldicellulosiruptor hydrothermalis 108]
Length = 673
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 28/60 (46%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV + +H YY DNP +D YD + L L++Q+PE D P VG
Sbjct: 5 IKKRIRELVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYVFPDSPTQRVG 64
>gi|223041748|ref|ZP_03611941.1| DNA ligase [Actinobacillus minor 202]
gi|223017432|gb|EEF15850.1| DNA ligase [Actinobacillus minor 202]
Length = 680
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 29/58 (50%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E+E L ++ Y+ LDNPL D YDR+ L L+ Q PEL D P VG
Sbjct: 14 SEIETLRNKLREYEYHYHVLDNPLVPDAEYDRLMNELKNLEWQHPELITPDSPTQRVG 71
>gi|296451892|ref|ZP_06893609.1| NAD-dependent DNA ligase LigA [Clostridium difficile NAP08]
gi|296879713|ref|ZP_06903688.1| NAD-dependent DNA ligase LigA [Clostridium difficile NAP07]
gi|296259274|gb|EFH06152.1| NAD-dependent DNA ligase LigA [Clostridium difficile NAP08]
gi|296429302|gb|EFH15174.1| NAD-dependent DNA ligase LigA [Clostridium difficile NAP07]
Length = 677
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K E+ L++ +H + YY D+P +D YD++ + L +L+E+ PEL D P
Sbjct: 1 MQKVSIKDEINKLIETINYHNERYYNQDSPEISDYEYDKLMKELISLEEEHPELKRIDSP 60
Query: 114 WNTVG 118
N VG
Sbjct: 61 TNRVG 65
>gi|126700928|ref|YP_001089825.1| DNA ligase [Clostridium difficile 630]
gi|123362868|sp|Q180F3|DNLJ_CLOD6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
Length = 677
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K E+ L++ +H + YY D+P +D YD++ + L +L+E+ PEL D P
Sbjct: 1 MQKVSVKDEINKLIETINYHNERYYNQDSPEISDYEYDKLMKELISLEEEHPELKRIDSP 60
Query: 114 WNTVG 118
N VG
Sbjct: 61 TNRVG 65
>gi|327399096|ref|YP_004339965.1| DNA ligase [Hippea maritima DSM 10411]
gi|327181725|gb|AEA33906.1| DNA ligase [Hippea maritima DSM 10411]
Length = 667
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 37/65 (56%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ EA +E L K +H YY LD+P+ +D YD + + L L+E +P+ +DE+ P
Sbjct: 1 MNDREAKERIEQLRKKLHYHNYRYYVLDDPIISDSEYDMMLKELKELEESYPQFYDENSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TVRVG 65
>gi|315502322|ref|YP_004081209.1| DNA ligase, nad-dependent [Micromonospora sp. L5]
gi|315408941|gb|ADU07058.1| DNA ligase, NAD-dependent [Micromonospora sp. L5]
Length = 717
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 28/60 (46%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
A L + HQ YY LD P TD +D+ L+AL+ ++P L D P VG
Sbjct: 32 ARERHATLSQELTEHQYRYYVLDAPTVTDAEFDKQLRELEALEAEYPALRTPDSPTQRVG 91
>gi|212212963|ref|YP_002303899.1| NAD-dependent DNA ligase [Coxiella burnetii CbuG_Q212]
gi|254781302|sp|B6J1C6|DNLJ_COXB2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|212011373|gb|ACJ18754.1| NAD-dependent DNA ligase [Coxiella burnetii CbuG_Q212]
Length = 677
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 26/63 (41%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
+ +E L + H YY L P D +YD + L L++++PE P
Sbjct: 7 PAKIQKRIERLRQEINDHNYRYYVLSQPTIPDSVYDELFHELQKLEKKYPETITPSSPTQ 66
Query: 116 TVG 118
VG
Sbjct: 67 RVG 69
>gi|312135376|ref|YP_004002714.1| DNA ligase, nad-dependent [Caldicellulosiruptor owensensis OL]
gi|311775427|gb|ADQ04914.1| DNA ligase, NAD-dependent [Caldicellulosiruptor owensensis OL]
Length = 673
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 28/60 (46%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV + +H YY DNP +D YD + L L++Q+PE D P VG
Sbjct: 5 IKKRIRELVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYVLPDSPTQRVG 64
>gi|146296740|ref|YP_001180511.1| DNA ligase, NAD-dependent [Caldicellulosiruptor saccharolyticus DSM
8903]
gi|166215569|sp|A4XK85|DNLJ_CALS8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|145410316|gb|ABP67320.1| DNA ligase, NAD-dependent [Caldicellulosiruptor saccharolyticus DSM
8903]
Length = 673
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 28/60 (46%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV + +H YY DNP +D YD + L L++Q+PE D P VG
Sbjct: 5 IKKRIRELVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYIFPDSPTQRVG 64
>gi|289649545|ref|ZP_06480888.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. aesculi
str. 2250]
Length = 787
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 24/60 (40%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L H Y+ LD P D YDR+ L AL+ + P L D P VG
Sbjct: 4 VETRILELRAELDEHNYRYHVLDEPSIPDVEYDRLFHELKALEVENPHLVTPDSPTQRVG 63
>gi|240948595|ref|ZP_04752968.1| NAD-dependent DNA ligase LigA [Actinobacillus minor NM305]
gi|240297103|gb|EER47674.1| NAD-dependent DNA ligase LigA [Actinobacillus minor NM305]
Length = 679
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 31/60 (51%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ E+E L ++ Y+ LDNPL D YDR+ L L+ Q PEL D P VG
Sbjct: 12 SLSEIETLRNKLREYEYHYHVLDNPLVPDAEYDRLMNELKNLEWQHPELITPDSPTQRVG 71
>gi|302865766|ref|YP_003834403.1| DNA ligase, NAD-dependent [Micromonospora aurantiaca ATCC 27029]
gi|302568625|gb|ADL44827.1| DNA ligase, NAD-dependent [Micromonospora aurantiaca ATCC 27029]
Length = 717
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 28/60 (46%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
A L + HQ YY LD P TD +D+ L+AL+ ++P L D P VG
Sbjct: 32 ARERHATLSQELTEHQYRYYVLDAPTVTDAEFDKQLRELEALEAEYPALRTPDSPTQRVG 91
>gi|312622179|ref|YP_004023792.1| DNA ligase, nad-dependent [Caldicellulosiruptor kronotskyensis
2002]
gi|312202646|gb|ADQ45973.1| DNA ligase, NAD-dependent [Caldicellulosiruptor kronotskyensis
2002]
Length = 673
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 28/60 (46%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV + +H YY DNP +D YD + L L++Q+PE D P VG
Sbjct: 5 IKKRIRELVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYVFPDSPTQRVG 64
>gi|209364099|ref|YP_001424866.2| NAD-dependent DNA ligase [Coxiella burnetii Dugway 5J108-111]
gi|207082032|gb|ABS76887.2| NAD-dependent DNA ligase [Coxiella burnetii Dugway 5J108-111]
Length = 673
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 26/63 (41%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
+ +E L + H YY L P D +YD + L L++++PE P
Sbjct: 7 PAKIQKRIERLRQEINDHNYRYYVLSQPTIPDSVYDELFHELQKLEKKYPETITPSSPTQ 66
Query: 116 TVG 118
VG
Sbjct: 67 RVG 69
>gi|110679832|ref|YP_682839.1| DNA ligase, NAD-dependent [Roseobacter denitrificans OCh 114]
gi|123172419|sp|Q166E0|DNLJ_ROSDO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|109455948|gb|ABG32153.1| DNA ligase, NAD-dependent [Roseobacter denitrificans OCh 114]
Length = 705
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 33/72 (45%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
+ SL++ A E+ L + Y+ D P+ +D +D R A++E+FP
Sbjct: 2 DFAPLDSLTEKAAKKELSKLADLLDQANTAYHANDAPIISDADFDAYKRRNLAIEERFPH 61
Query: 107 LFDEDHPWNTVG 118
L D P + VG
Sbjct: 62 LKRADSPTDRVG 73
>gi|86148411|ref|ZP_01066703.1| DNA ligase [Vibrio sp. MED222]
gi|85833825|gb|EAQ51991.1| DNA ligase [Vibrio sp. MED222]
Length = 670
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 32/63 (50%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
K + +E L + +H YY D+P D YDR+ ++L L+E+ PEL D P
Sbjct: 2 KESIQVTLEQLRETLHYHAVRYYVEDSPEIPDVEYDRLMQQLLKLEEENPELVTVDSPSQ 61
Query: 116 TVG 118
VG
Sbjct: 62 RVG 64
>gi|84393803|ref|ZP_00992550.1| DNA ligase [Vibrio splendidus 12B01]
gi|84375600|gb|EAP92500.1| DNA ligase [Vibrio splendidus 12B01]
Length = 670
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
K + +E L + +H YY D+P D YDR+ ++L ++E+ PEL D P
Sbjct: 2 KESIQVTLEQLRETLHYHAVRYYVEDSPEIPDVEYDRLMQQLLKIEEENPELVTVDSPSQ 61
Query: 116 TVG 118
VG
Sbjct: 62 RVG 64
>gi|126726435|ref|ZP_01742276.1| DNA ligase [Rhodobacterales bacterium HTCC2150]
gi|126704298|gb|EBA03390.1| DNA ligase [Rhodobacterales bacterium HTCC2150]
Length = 705
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 32/70 (45%)
Query: 49 KKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF 108
K ++ EA E++ L K+ Y+ D P +D YDR+ ++ FP+L
Sbjct: 3 KNPLDMTMAEARSELKRLAKVIAAANSSYHTADAPEISDAEYDRLRRLNSEIEAAFPDLK 62
Query: 109 DEDHPWNTVG 118
D P + VG
Sbjct: 63 RADSPSDNVG 72
>gi|6573451|pdb|1B04|A Chain A, Structure Of The Adenylation Domain Of An Nad+ Dependent
Ligase
gi|6573452|pdb|1B04|B Chain B, Structure Of The Adenylation Domain Of An Nad+ Dependent
Ligase
Length = 318
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 33/65 (50%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + +A L ++ + YY LD P D YDR+ + L A++EQ+PEL D P
Sbjct: 1 MDRQQAERRAAELRELLNRYGYEYYVLDRPSVPDAEYDRLMQELIAIEEQYPELKTSDSP 60
Query: 114 WNTVG 118
+G
Sbjct: 61 TQRIG 65
>gi|5733399|gb|AAD49562.1|AF126866_1 NAD-dependent DNA ligase [Pseudoalteromonas haloplanktis]
Length = 672
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 27/58 (46%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+V +L I H YY LD P D YDR+ L AL+ + PE D P VG
Sbjct: 7 EQVNHLRIILEQHNYNYYVLDTPSIPDSEYDRLLRELSALETEHPEFLTADSPTQKVG 64
>gi|52079149|ref|YP_077940.1| NAD-dependent DNA ligase LigA [Bacillus licheniformis ATCC 14580]
gi|52784516|ref|YP_090345.1| NAD-dependent DNA ligase LigA [Bacillus licheniformis ATCC 14580]
gi|319647076|ref|ZP_08001302.1| DNA ligase [Bacillus sp. BT1B_CT2]
gi|81386291|sp|Q65MR2|DNLJ_BACLD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|52002360|gb|AAU22302.1| DNA ligase [Bacillus licheniformis ATCC 14580]
gi|52347018|gb|AAU39652.1| LigA [Bacillus licheniformis ATCC 14580]
gi|317390900|gb|EFV71701.1| DNA ligase [Bacillus sp. BT1B_CT2]
Length = 667
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 33/65 (50%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K A VE L + + Y+ LD+P D YD++ + L AL+E+ P+L D P
Sbjct: 1 MEKEAAKRRVEQLHALINKYNYEYHTLDDPSVPDSEYDKLMKELIALEEEHPDLKTPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SQRVG 65
>gi|152981161|ref|YP_001353755.1| DNA ligase (polydeoxyribonucleotide synthase) [Janthinobacterium
sp. Marseille]
gi|166215814|sp|A6SZQ8|DNLJ_JANMA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|151281238|gb|ABR89648.1| DNA ligase (Polydeoxyribonucleotide synthase) [Janthinobacterium
sp. Marseille]
Length = 692
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 25/59 (42%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+L H Y+ LDNP D YD++ L AL+ PEL D P VG
Sbjct: 27 AARAAWLRDELNRHNYSYHVLDNPSIPDAEYDKLFRELQALETSHPELLVFDSPTQRVG 85
>gi|219870289|ref|YP_002474664.1| NAD-dependent DNA ligase LigA [Haemophilus parasuis SH0165]
gi|254781340|sp|B8F314|DNLJ_HAEPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|219690493|gb|ACL31716.1| NAD-dependent DNA ligase LigA [Haemophilus parasuis SH0165]
Length = 675
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 31/60 (51%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++E+L + ++ Y+ LDNPL D YDR+ L L+ Q PEL D P VG
Sbjct: 5 IETQLEHLREKLREYEYHYHVLDNPLVPDAEYDRLMNELKNLEWQHPELITSDSPTQRVG 64
>gi|167624496|ref|YP_001674790.1| DNA ligase, NAD-dependent [Shewanella halifaxensis HAW-EB4]
gi|190359286|sp|B0TKB2|DNLJ_SHEHH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|167354518|gb|ABZ77131.1| DNA ligase, NAD-dependent [Shewanella halifaxensis HAW-EB4]
Length = 667
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 26/60 (43%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E+ L H YY D+P D YDR+ RL AL+ + P+ D P VG
Sbjct: 4 IQTEIAQLTAELNQHNYRYYVDDSPSIPDSEYDRLLNRLKALETEHPQFCLADSPTQRVG 63
>gi|163802586|ref|ZP_02196478.1| NAD-dependent DNA ligase LigA [Vibrio sp. AND4]
gi|159173669|gb|EDP58488.1| NAD-dependent DNA ligase LigA [Vibrio sp. AND4]
Length = 670
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ ++E L + +H YY DNP D YDR+ L ++ + P+L D P
Sbjct: 3 ESVLQQLEELKESLHYHAVRYYVEDNPEIPDAEYDRMMRELLDIEAEHPDLVTVDSPSQR 62
Query: 117 VG 118
VG
Sbjct: 63 VG 64
>gi|294340191|emb|CAZ88563.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Thiomonas sp.
3As]
Length = 686
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 22/62 (35%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ L YY LD PL D YD + L ++ PEL D P
Sbjct: 8 AQPAERATQLRAEIARLDHAYYVLDAPLAPDADYDALFRELQQIEADHPELRTPDSPTQR 67
Query: 117 VG 118
VG
Sbjct: 68 VG 69
>gi|260219439|emb|CBA26284.1| DNA ligase [Curvibacter putative symbiont of Hydra magnipapillata]
Length = 696
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 30/77 (38%)
Query: 42 ESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQ 101
+ LD ++ ++ L + YY LD PL D YDR+ L L+
Sbjct: 1 MATLDLFSPEPAVPDSLPHKRLQALREELHRLGHAYYVLDAPLVPDVEYDRLFRELQDLE 60
Query: 102 EQFPELFDEDHPWNTVG 118
Q PE D P VG
Sbjct: 61 AQHPEWVTPDSPTQRVG 77
>gi|190359248|sp|A9KCS0|DNLJ_COXBN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
Length = 670
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 26/63 (41%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
+ +E L + H YY L P D +YD + L L++++PE P
Sbjct: 4 PAKIQKRIERLRQEINDHNYRYYVLSQPTIPDSVYDELFHELQKLEKKYPETITPSSPTQ 63
Query: 116 TVG 118
VG
Sbjct: 64 RVG 66
>gi|189347498|ref|YP_001944027.1| DNA ligase, NAD-dependent [Chlorobium limicola DSM 245]
gi|254781283|sp|B3EFT6|DNLJ_CHLL2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|189341645|gb|ACD91048.1| DNA ligase, NAD-dependent [Chlorobium limicola DSM 245]
Length = 673
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + A E+ L K H YY P+ +D +DR+ E+L AL+ P+L D P
Sbjct: 1 MDRAMAADEIARLRKEIERHNYLYYVEAEPVISDYEFDRLLEQLIALERLHPDLVTPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SLRVG 65
>gi|148982028|ref|ZP_01816589.1| NAD-dependent DNA ligase LigA [Vibrionales bacterium SWAT-3]
gi|145960667|gb|EDK26012.1| NAD-dependent DNA ligase LigA [Vibrionales bacterium SWAT-3]
Length = 670
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
K + +E L + +H YY D+P D YDR+ ++L ++E+ PEL D P
Sbjct: 2 KESIQVTLEQLRETLHYHAVRYYVEDSPEIPDVEYDRLMQQLLKIEEENPELVTVDSPSQ 61
Query: 116 TVG 118
VG
Sbjct: 62 RVG 64
>gi|167581473|ref|ZP_02374347.1| DNA ligase, NAD-dependent [Burkholderia thailandensis TXDOH]
Length = 691
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 26/64 (40%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S G+ +L YY LD P D YDR+ L ++ + P+L D P
Sbjct: 9 SAGQPAKRAAWLRAELERANYAYYVLDQPDLPDAEYDRLFAELQQIEAEHPDLVTPDSPT 68
Query: 115 NTVG 118
VG
Sbjct: 69 QRVG 72
>gi|194307280|gb|ACF42137.1| DNA ligase [Mycobacterium lepromatosis]
Length = 686
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 30/61 (49%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E + + L + HQ YY D P+ +D +D + RL L+EQ PEL D P +
Sbjct: 4 ELLRQWRKLAEEVREHQFRYYVRDAPIISDAEFDALLGRLTVLEEQHPELRTPDSPTQLI 63
Query: 118 G 118
G
Sbjct: 64 G 64
>gi|165923886|ref|ZP_02219718.1| DNA ligase, NAD-dependent [Coxiella burnetii RSA 334]
gi|165916671|gb|EDR35275.1| DNA ligase, NAD-dependent [Coxiella burnetii RSA 334]
Length = 670
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 26/63 (41%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
+ +E L + H YY L P D +YD + L L++++PE P
Sbjct: 4 PAKIQKRIERLRQEINDHNYRYYVLSQPTIPDSVYDELFHELQKLEKKYPETITPSSPTQ 63
Query: 116 TVG 118
VG
Sbjct: 64 RVG 66
>gi|83720010|ref|YP_442546.1| DNA ligase, NAD-dependent [Burkholderia thailandensis E264]
gi|257138755|ref|ZP_05587017.1| DNA ligase, NAD-dependent [Burkholderia thailandensis E264]
gi|123753789|sp|Q2SX03|DNLJ_BURTA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|83653835|gb|ABC37898.1| DNA ligase, NAD-dependent [Burkholderia thailandensis E264]
Length = 691
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 26/64 (40%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S G+ +L YY LD P D YDR+ L ++ + P+L D P
Sbjct: 9 SAGQPAKRAAWLRAELERANYAYYVLDQPDLPDAEYDRLFAELQQIEAEHPDLVTPDSPT 68
Query: 115 NTVG 118
VG
Sbjct: 69 QRVG 72
>gi|256380031|ref|YP_003103691.1| DNA ligase, NAD-dependent [Actinosynnema mirum DSM 43827]
gi|255924334|gb|ACU39845.1| DNA ligase, NAD-dependent [Actinosynnema mirum DSM 43827]
Length = 816
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 28/63 (44%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
+A L + HQ YY LD P +DG +D + L +L++ P L D P
Sbjct: 43 PADARDRHRALAEEVRGHQFRYYVLDAPTISDGEFDALLRELQSLEDAHPGLATPDSPTQ 102
Query: 116 TVG 118
VG
Sbjct: 103 QVG 105
>gi|167619582|ref|ZP_02388213.1| DNA ligase, NAD-dependent [Burkholderia thailandensis Bt4]
Length = 691
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 26/64 (40%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S G+ +L YY LD P D YDR+ L ++ + P+L D P
Sbjct: 9 SAGQPAKRAAWLRAELERANYAYYVLDQPDLPDAEYDRLFAELQQIEAEHPDLVTPDSPT 68
Query: 115 NTVG 118
VG
Sbjct: 69 QRVG 72
>gi|121587330|ref|ZP_01677101.1| DNA ligase [Vibrio cholerae 2740-80]
gi|121730035|ref|ZP_01682446.1| DNA ligase [Vibrio cholerae V52]
gi|147675693|ref|YP_001216443.1| NAD-dependent DNA ligase LigA [Vibrio cholerae O395]
gi|153818602|ref|ZP_01971269.1| DNA ligase [Vibrio cholerae NCTC 8457]
gi|227081145|ref|YP_002809696.1| DNA ligase [Vibrio cholerae M66-2]
gi|229505430|ref|ZP_04394940.1| DNA ligase [Vibrio cholerae BX 330286]
gi|262167192|ref|ZP_06034905.1| DNA ligase [Vibrio cholerae RC27]
gi|298498912|ref|ZP_07008719.1| DNA ligase, NAD-dependent [Vibrio cholerae MAK 757]
gi|190359299|sp|A5F2W3|DNLJ_VIBC3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254781449|sp|C3LTL9|DNLJ_VIBCM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|121548413|gb|EAX58473.1| DNA ligase [Vibrio cholerae 2740-80]
gi|121628224|gb|EAX60744.1| DNA ligase [Vibrio cholerae V52]
gi|126510828|gb|EAZ73422.1| DNA ligase [Vibrio cholerae NCTC 8457]
gi|146317576|gb|ABQ22115.1| DNA ligase [Vibrio cholerae O395]
gi|227009033|gb|ACP05245.1| DNA ligase [Vibrio cholerae M66-2]
gi|227012788|gb|ACP08998.1| DNA ligase [Vibrio cholerae O395]
gi|229357653|gb|EEO22570.1| DNA ligase [Vibrio cholerae BX 330286]
gi|262024413|gb|EEY43101.1| DNA ligase [Vibrio cholerae RC27]
gi|297543245|gb|EFH79295.1| DNA ligase, NAD-dependent [Vibrio cholerae MAK 757]
Length = 669
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 24/62 (38%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ + L K H YY D P D YDR+ L L+ PEL D P
Sbjct: 2 SDVAQRLTELRKTLHEHGVRYYVEDAPTIPDAEYDRLMRELLELEAAHPELMSSDSPSLR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|311104688|ref|YP_003977541.1| DNA ligase, NAD-dependent [Achromobacter xylosoxidans A8]
gi|310759377|gb|ADP14826.1| DNA ligase, NAD-dependent [Achromobacter xylosoxidans A8]
Length = 702
Score = 98.0 bits (243), Expect = 3e-19, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 22/50 (44%)
Query: 69 IALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY D P +D YD + L AL+ + PEL + P VG
Sbjct: 20 EIEQHNVRYYVYDEPSISDAEYDGLMRELQALEAEHPELVTPESPTQRVG 69
>gi|225018630|ref|ZP_03707822.1| hypothetical protein CLOSTMETH_02580 [Clostridium methylpentosum
DSM 5476]
gi|224948624|gb|EEG29833.1| hypothetical protein CLOSTMETH_02580 [Clostridium methylpentosum
DSM 5476]
Length = 659
Score = 98.0 bits (243), Expect = 3e-19, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 35/65 (53%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K +A + V L K +H YY LD+P +D YD + L+ L+ +FPEL ++ P
Sbjct: 1 MDKKDAQLRVAELTKQLHYHSHRYYVLDDPEISDFDYDAMLRELETLEAEFPELRSDNSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TVRVG 65
>gi|167855687|ref|ZP_02478444.1| NAD-dependent DNA ligase LigA [Haemophilus parasuis 29755]
gi|167853205|gb|EDS24462.1| NAD-dependent DNA ligase LigA [Haemophilus parasuis 29755]
Length = 675
Score = 98.0 bits (243), Expect = 3e-19, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 31/60 (51%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++E+L + ++ Y+ LDNPL D YDR+ L L+ Q PEL D P VG
Sbjct: 5 IETQLEHLREKLREYEYHYHVLDNPLVPDAEYDRLMNELKNLEWQHPELITSDSPTQRVG 64
>gi|195953269|ref|YP_002121559.1| DNA ligase, NAD-dependent [Hydrogenobaculum sp. Y04AAS1]
gi|254781349|sp|B4U8X0|DNLJ_HYDS0 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|195932881|gb|ACG57581.1| DNA ligase, NAD-dependent [Hydrogenobaculum sp. Y04AAS1]
Length = 700
Score = 98.0 bits (243), Expect = 3e-19, Method: Composition-based stats.
Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 34 FLPNKRALESWLDKAKK--VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYD 91
F+ + + + + LSK EA+ + L ++ +H YY L+ P+ +D YD
Sbjct: 6 FIDKTKEILKTYNLSPDKHPPKLSKEEAIKIINTLRELINYHDYRYYVLNQPVISDAEYD 65
Query: 92 RVSERLDALQEQFPELFDEDHPWNTV 117
+ + L ++++ +P+L D V
Sbjct: 66 AIYKFLKSIEDNYPDLITPDSLTQRV 91
>gi|120554094|ref|YP_958445.1| DNA ligase, NAD-dependent [Marinobacter aquaeolei VT8]
gi|166215819|sp|A1TZT9|DNLJ_MARAV RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|120323943|gb|ABM18258.1| DNA ligase, NAD-dependent [Marinobacter aquaeolei VT8]
Length = 678
Score = 98.0 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 27/63 (42%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
V+ L H +YY D+P D YDR+ L L+ + PEL ED P
Sbjct: 5 PETIRKRVDSLRATLEDHNYYYYVQDDPRIPDAEYDRLFRELQKLEAEHPELATEDSPTR 64
Query: 116 TVG 118
VG
Sbjct: 65 RVG 67
>gi|222529603|ref|YP_002573485.1| DNA ligase, NAD-dependent [Caldicellulosiruptor bescii DSM 6725]
gi|254781543|sp|B9MK54|DNLJ_ANATD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|222456450|gb|ACM60712.1| DNA ligase, NAD-dependent [Caldicellulosiruptor bescii DSM 6725]
Length = 673
Score = 98.0 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 28/60 (46%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV + +H YY DNP +D YD + L L++Q+PE D P VG
Sbjct: 5 IRKRIRELVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYVFPDSPTQRVG 64
>gi|259907817|ref|YP_002648173.1| NAD-dependent DNA ligase LigA [Erwinia pyrifoliae Ep1/96]
gi|224963439|emb|CAX54927.1| DNA ligase [Erwinia pyrifoliae Ep1/96]
gi|283477688|emb|CAY73604.1| DNA ligase [Erwinia pyrifoliae DSM 12163]
Length = 678
Score = 98.0 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 29/62 (46%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ +L + H++ Y+ LD P D YDR+ L L+ Q PEL D P
Sbjct: 2 ESVQDKITHLRTLLRHYEYQYHVLDAPAVPDAEYDRLMGELRDLEAQHPELLTSDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|262276434|ref|ZP_06054243.1| DNA ligase [Grimontia hollisae CIP 101886]
gi|262220242|gb|EEY71558.1| DNA ligase [Grimontia hollisae CIP 101886]
Length = 670
Score = 98.0 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 29/61 (47%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+ +++ L +H YY D P D YDR+ + L A++ + PEL D P V
Sbjct: 4 DIQQKLQSLKTQLNYHGHLYYVEDKPELPDAEYDRMMQELLAIEAKHPELVTADSPSQRV 63
Query: 118 G 118
G
Sbjct: 64 G 64
>gi|330995784|ref|ZP_08319681.1| DNA ligase [Paraprevotella xylaniphila YIT 11841]
gi|329574514|gb|EGG56079.1| DNA ligase [Paraprevotella xylaniphila YIT 11841]
Length = 669
Score = 98.0 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 27/61 (44%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E ++E L H YY L+ P +D +DR+ L L+ PE D D P V
Sbjct: 4 EVKEQIERLRSELHRHNYNYYVLNAPEISDQEFDRMMRELQDLEAAHPEFDDPDSPTRRV 63
Query: 118 G 118
G
Sbjct: 64 G 64
>gi|326330727|ref|ZP_08197031.1| DNA ligase, NAD-dependent [Nocardioidaceae bacterium Broad-1]
gi|325951568|gb|EGD43604.1| DNA ligase, NAD-dependent [Nocardioidaceae bacterium Broad-1]
Length = 702
Score = 98.0 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 36/69 (52%)
Query: 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
+T+ + E E + L + + YY LD+P +D +D+ R++ L+EQFPEL
Sbjct: 4 DLTAEAGPEQKSEHQELAEQIEDARYRYYVLDDPTLSDADFDQKWRRINELEEQFPELRT 63
Query: 110 EDHPWNTVG 118
D P VG
Sbjct: 64 PDSPTQKVG 72
>gi|160899029|ref|YP_001564611.1| NAD-dependent DNA ligase [Delftia acidovorans SPH-1]
gi|254781308|sp|A9BZW4|DNLJ_DELAS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|160364613|gb|ABX36226.1| DNA ligase, NAD-dependent [Delftia acidovorans SPH-1]
Length = 703
Score = 98.0 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 35/77 (45%)
Query: 41 LESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDAL 100
L S A + + + + +V+ L YY LD P DG YDRV ++L AL
Sbjct: 7 LFSGAAPAAPESGAAPDKVLAKVQALRAQLNQWAHEYYVLDTPTVPDGEYDRVFQQLQAL 66
Query: 101 QEQFPELFDEDHPWNTV 117
+ +PEL D P V
Sbjct: 67 EGAYPELVTPDSPTQRV 83
>gi|157374877|ref|YP_001473477.1| DNA ligase (NAD(+)) [Shewanella sediminis HAW-EB3]
gi|190359288|sp|A8FU26|DNLJ_SHESH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|157317251|gb|ABV36349.1| DNA ligase (NAD(+)) [Shewanella sediminis HAW-EB3]
Length = 670
Score = 98.0 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 27/60 (45%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E++ L + H YY D P D YDR+ RL L+ + PEL D P VG
Sbjct: 4 IQEEIKQLTSVLNEHNYRYYVDDAPSVPDAEYDRLINRLKQLEAENPELCLPDSPTQRVG 63
>gi|91775756|ref|YP_545512.1| DNA ligase, NAD-dependent [Methylobacillus flagellatus KT]
gi|123254532|sp|Q1H1G6|DNLJ_METFK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|91709743|gb|ABE49671.1| DNA ligase, NAD-dependent [Methylobacillus flagellatus KT]
Length = 693
Score = 98.0 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 27/59 (45%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+VE L + YY L+ P D YDRV L AL++ PEL D P VG
Sbjct: 18 AEKVEALRATIRRYDYEYYVLNAPSVPDSEYDRVFRELKALEDAHPELVTPDSPTQRVG 76
>gi|212218835|ref|YP_002305622.1| NAD-dependent DNA ligase [Coxiella burnetii CbuK_Q154]
gi|254781301|sp|B6J878|DNLJ_COXB1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|212013097|gb|ACJ20477.1| NAD-dependent DNA ligase [Coxiella burnetii CbuK_Q154]
Length = 673
Score = 98.0 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 26/63 (41%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
+ +E L + H YY L P D +YD + L L++++PE P
Sbjct: 7 PAKIQKRIERLREEINDHNYRYYVLSQPTIPDSVYDELFHELQKLEKKYPETITPSSPTQ 66
Query: 116 TVG 118
VG
Sbjct: 67 RVG 69
>gi|114047080|ref|YP_737630.1| DNA ligase, NAD-dependent [Shewanella sp. MR-7]
gi|113888522|gb|ABI42573.1| DNA ligase, NAD-dependent [Shewanella sp. MR-7]
Length = 690
Score = 98.0 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 32/66 (48%)
Query: 53 SLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDH 112
+++ A ++ L + H YY D P TD YDR+ +RL L+ ++P+ D
Sbjct: 19 AVTPQNAQPLMQALCQSLNEHNIRYYVDDAPSITDSEYDRLMQRLKQLEAEYPQFVAADS 78
Query: 113 PWNTVG 118
P VG
Sbjct: 79 PTQRVG 84
>gi|309782142|ref|ZP_07676872.1| DNA ligase, NAD-dependent [Ralstonia sp. 5_7_47FAA]
gi|308919208|gb|EFP64875.1| DNA ligase, NAD-dependent [Ralstonia sp. 5_7_47FAA]
Length = 813
Score = 98.0 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
+ K + S + EA +L + YY LD P D YDR+ L+AL+ +
Sbjct: 1 MSKIAEPASGTTPEARA--AWLRAELNRYAHEYYVLDQPSVPDAEYDRLYRELEALEAEH 58
Query: 105 PELFDEDHPWNTVG 118
PEL D P VG
Sbjct: 59 PELKTPDSPTLRVG 72
>gi|166216288|sp|Q0HWD2|DNLJ_SHESR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
Length = 688
Score = 98.0 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 32/66 (48%)
Query: 53 SLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDH 112
+++ A ++ L + H YY D P TD YDR+ +RL L+ ++P+ D
Sbjct: 17 AVTPQNAQPLMQALCQSLNEHNIRYYVDDAPSITDSEYDRLMQRLKQLEAEYPQFVAADS 76
Query: 113 PWNTVG 118
P VG
Sbjct: 77 PTQRVG 82
>gi|82523924|emb|CAI78646.1| NAD-dependent DNA ligase [uncultured delta proteobacterium]
Length = 670
Score = 98.0 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 29/65 (44%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ A + L +I +H K YY+ D P +D YD + L L+ QFP+ P
Sbjct: 2 MDNNSAHKRIIELRQIIEYHNKRYYQQDAPEISDAEYDLLMRELHNLEAQFPDDELASSP 61
Query: 114 WNTVG 118
VG
Sbjct: 62 TQRVG 66
>gi|225849186|ref|YP_002729350.1| DNA ligase, NAD-dependent [Sulfurihydrogenibium azorense Az-Fu1]
gi|254781434|sp|C1DW63|DNLJ_SULAA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|225644062|gb|ACN99112.1| DNA ligase, NAD-dependent [Sulfurihydrogenibium azorense Az-Fu1]
Length = 701
Score = 98.0 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 31 EAKFLPNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLY 90
+ K + R + + S+ + +A +E L ++ H YY L P+ +D Y
Sbjct: 7 QRKLIEKTREFLNL-----DIKSIDRKKAESIIEDLREVIRFHDWRYYVLAQPVISDYEY 61
Query: 91 DRVSERLDALQEQFPELFDEDHPWNTV 117
D++ + L ++ ++P+L D P V
Sbjct: 62 DKLFKLLKDIESKYPDLITPDSPTQRV 88
>gi|330445331|ref|ZP_08308983.1| DNA ligase, NAD-dependent [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328489522|dbj|GAA03480.1| DNA ligase, NAD-dependent [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 671
Score = 98.0 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 28/59 (47%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E+ L + +H YY DNP D YDR+ ++L ++ + PE D P VG
Sbjct: 6 QQELFTLREQLDYHGHRYYVEDNPEIPDAEYDRMMQQLLKIEAEHPEWVTVDSPSQRVG 64
>gi|206560458|ref|YP_002231222.1| DNA ligase [Burkholderia cenocepacia J2315]
gi|254781275|sp|B4ECN6|DNLJ_BURCJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|198036499|emb|CAR52396.1| DNA ligase [Burkholderia cenocepacia J2315]
Length = 691
Score = 98.0 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 22/58 (37%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+L YY LD P D YDR+ L L+ PEL D P VG
Sbjct: 15 ARAAWLRDQLERANYAYYVLDQPDLPDAEYDRLFRELQQLETDHPELVTPDSPTQRVG 72
>gi|21231024|ref|NP_636941.1| NAD-dependent DNA ligase LigA [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66768971|ref|YP_243733.1| NAD-dependent DNA ligase LigA [Xanthomonas campestris pv.
campestris str. 8004]
gi|188992085|ref|YP_001904095.1| NAD-dependent DNA ligase LigA [Xanthomonas campestris pv.
campestris str. B100]
gi|81305065|sp|Q4UTB0|DNLJ_XANC8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|81794799|sp|Q8PAB5|DNLJ_XANCP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254782312|sp|B0RUY2|DNLJ_XANCB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|21112648|gb|AAM40865.1| DNA ligase [Xanthomonas campestris pv. campestris str. ATCC 33913]
gi|66574303|gb|AAY49713.1| DNA ligase [Xanthomonas campestris pv. campestris str. 8004]
gi|167733845|emb|CAP52051.1| DNA ligase (NAD(+)) [Xanthomonas campestris pv. campestris]
Length = 833
Score = 98.0 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 27/60 (45%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
++ L + Y+ LD P D YDR+ L+AL+ PEL D P VGY
Sbjct: 8 AQRIDALRQRIEDANYRYHVLDEPQIADVEYDRLLRELEALEAAHPELATADSPTQRVGY 67
>gi|189425977|ref|YP_001953154.1| DNA ligase, NAD-dependent [Geobacter lovleyi SZ]
gi|254781338|sp|B3E8F8|DNLJ_GEOLS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|189422236|gb|ACD96634.1| DNA ligase, NAD-dependent [Geobacter lovleyi SZ]
Length = 683
Score = 98.0 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 29/60 (48%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
A + L ++ HH + YY LD+P +D YD + L ++ P+L D P VG
Sbjct: 16 AQLRAAELRRLLEHHNRCYYELDSPEISDAEYDALFRELQVIEAARPDLLTPDSPTLRVG 75
>gi|307257368|ref|ZP_07539138.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
gi|306864218|gb|EFM96131.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
Length = 682
Score = 98.0 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++E L + ++ +Y+ LDNPL D YDR+ L L+ Q PE D P VG
Sbjct: 16 AQLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITADSPTQRVG 73
>gi|153207803|ref|ZP_01946403.1| DNA ligase, NAD-dependent [Coxiella burnetii 'MSU Goat Q177']
gi|120576355|gb|EAX32979.1| DNA ligase, NAD-dependent [Coxiella burnetii 'MSU Goat Q177']
Length = 670
Score = 98.0 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 26/63 (41%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
+ +E L + H YY L P D +YD + L L++++PE P
Sbjct: 4 PAKIQKRIERLREEINDHNYRYYVLSQPTIPDSVYDELFHELQKLEKKYPETITPSSPTQ 63
Query: 116 TVG 118
VG
Sbjct: 64 RVG 66
>gi|310657889|ref|YP_003935610.1| DNA ligase [Clostridium sticklandii DSM 519]
gi|308824667|emb|CBH20705.1| DNA ligase, NAD(+)-dependent [Clostridium sticklandii]
Length = 683
Score = 98.0 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 36/67 (53%)
Query: 52 TSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
S+++ + ++ L + HH YY D+P +D +D + + L AL+E++PE ED
Sbjct: 3 ESINEKDIYNKINELRERIEHHSILYYVQDSPEISDADFDMLMKELIALEEKYPEYITED 62
Query: 112 HPWNTVG 118
P +G
Sbjct: 63 SPTQRIG 69
>gi|119472555|ref|ZP_01614603.1| NAD-dependent DNA ligase [Alteromonadales bacterium TW-7]
gi|119444879|gb|EAW26179.1| NAD-dependent DNA ligase [Alteromonadales bacterium TW-7]
Length = 672
Score = 98.0 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 27/58 (46%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ +L + H YY LD P D YDR+ L AL+ Q PE D P VG
Sbjct: 7 EQINHLRTLLEQHNYNYYVLDTPSIPDAEYDRLLRELSALETQNPEFLSADSPTQKVG 64
>gi|170733380|ref|YP_001765327.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia MC0-3]
gi|254781274|sp|B1JUF5|DNLJ_BURCC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|169816622|gb|ACA91205.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia MC0-3]
Length = 691
Score = 97.6 bits (242), Expect = 4e-19, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 22/58 (37%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+L YY LD P D YDR+ L L+ PEL D P VG
Sbjct: 15 ARAAWLRDQLERANHAYYVLDQPDLPDAEYDRLFRELQQLETDHPELVTPDSPTQRVG 72
>gi|159036755|ref|YP_001536008.1| DNA ligase, NAD-dependent [Salinispora arenicola CNS-205]
gi|190359280|sp|A8M5E3|DNLJ_SALAI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|157915590|gb|ABV97017.1| DNA ligase, NAD-dependent [Salinispora arenicola CNS-205]
Length = 710
Score = 97.6 bits (242), Expect = 4e-19, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 25/60 (41%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
A L HQ YY LD P +D +D L AL+ +FP L D P VG
Sbjct: 25 ARERHATLSLELTEHQYRYYVLDAPTISDAEFDERLRELAALEAEFPALRTPDSPTQRVG 84
>gi|116690045|ref|YP_835668.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia HI2424]
gi|166215562|sp|A0K8E8|DNLJ_BURCH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|166215593|sp|Q1BHI7|DNLJ_BURCA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|116648134|gb|ABK08775.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia HI2424]
Length = 691
Score = 97.6 bits (242), Expect = 4e-19, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 22/58 (37%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+L YY LD P D YDR+ L L+ PEL D P VG
Sbjct: 15 ARAAWLRDQLERANYAYYVLDQPDLPDAEYDRLFRELQQLETDHPELVTPDSPTQRVG 72
>gi|78066803|ref|YP_369572.1| DNA ligase (NAD+) [Burkholderia sp. 383]
gi|123742568|sp|Q39F38|DNLJ_BURS3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|77967548|gb|ABB08928.1| DNA ligase (NAD+) [Burkholderia sp. 383]
Length = 691
Score = 97.6 bits (242), Expect = 4e-19, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 22/58 (37%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+L YY LD P D YDR+ L L+ PEL D P VG
Sbjct: 15 ARAAWLRDQLERANYAYYVLDQPDLPDAEYDRLFRELQQLETDHPELVTPDSPTQRVG 72
>gi|254247879|ref|ZP_04941200.1| NAD-dependent DNA ligase [Burkholderia cenocepacia PC184]
gi|124872655|gb|EAY64371.1| NAD-dependent DNA ligase [Burkholderia cenocepacia PC184]
Length = 691
Score = 97.6 bits (242), Expect = 4e-19, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 22/58 (37%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+L YY LD P D YDR+ L L+ PEL D P VG
Sbjct: 15 ARAAWLRDQLERANYAYYVLDQPDLPDAEYDRLFRELQQLETDHPELVTPDSPTQRVG 72
>gi|190150622|ref|YP_001969147.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 7 str. AP76]
gi|307263969|ref|ZP_07545570.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 13 str. N273]
gi|254781246|sp|B3H275|DNLJ_ACTP7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|189915753|gb|ACE62005.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 7 str. AP76]
gi|306870658|gb|EFN02401.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 13 str. N273]
Length = 682
Score = 97.6 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++E L + ++ +Y+ LDNPL D YDR+ L L+ Q PE D P VG
Sbjct: 16 AQLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITADSPTQRVG 73
>gi|330817444|ref|YP_004361149.1| DNA ligase [Burkholderia gladioli BSR3]
gi|327369837|gb|AEA61193.1| DNA ligase [Burkholderia gladioli BSR3]
Length = 691
Score = 97.6 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 24/62 (38%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ +L YY LD P D YDR+ L ++ + P+L D P
Sbjct: 11 SQPSERAAWLRNELERANHAYYVLDQPDLPDAEYDRLFRELQQIEAEHPDLITPDSPTQR 70
Query: 117 VG 118
VG
Sbjct: 71 VG 72
>gi|307246220|ref|ZP_07528301.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
gi|307255203|ref|ZP_07537019.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 9 str.
CVJ13261]
gi|307259638|ref|ZP_07541362.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
gi|306852829|gb|EFM85053.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
gi|306861831|gb|EFM93809.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 9 str.
CVJ13261]
gi|306866283|gb|EFM98147.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
Length = 682
Score = 97.6 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++E L + ++ +Y+ LDNPL D YDR+ L L+ Q PE D P VG
Sbjct: 16 AQLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITADSPTQRVG 73
>gi|145633173|ref|ZP_01788905.1| DNA ligase [Haemophilus influenzae 3655]
gi|144986399|gb|EDJ92978.1| DNA ligase [Haemophilus influenzae 3655]
Length = 670
Score = 97.6 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L K ++ Y+ LDNP D YDR+ +L AL+ + PE D P VG
Sbjct: 4 IQTQLDNLRKTLRQYEYEYHVLDNPTVPDSEYDRLFHQLKALELEHPEFLTSDSPTQRVG 63
>gi|126668324|ref|ZP_01739283.1| DNA ligase, NAD-dependent [Marinobacter sp. ELB17]
gi|126627241|gb|EAZ97879.1| DNA ligase, NAD-dependent [Marinobacter sp. ELB17]
Length = 703
Score = 97.6 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 26/60 (43%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
V L H YY LD+P D YDR+ L AL+ ++PEL P VG
Sbjct: 8 VRDRVHQLRTTITDHNHHYYVLDDPQVPDAEYDRLFRGLQALEAEYPELATATSPTQRVG 67
>gi|307248328|ref|ZP_07530352.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
gi|306855149|gb|EFM87328.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
Length = 682
Score = 97.6 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++E L + ++ +Y+ LDNPL D YDR+ L L+ Q PE D P VG
Sbjct: 16 AQLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITADSPTQRVG 73
>gi|118465270|ref|YP_883031.1| NAD-dependent DNA ligase LigA [Mycobacterium avium 104]
gi|166215821|sp|A0QJE3|DNLJ_MYCA1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|118166557|gb|ABK67454.1| DNA ligase, NAD-dependent [Mycobacterium avium 104]
Length = 693
Score = 97.6 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 30/63 (47%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
E + + L + HQ YY D P+ +D +D + L AL+E+ PEL D P
Sbjct: 10 PPEVRRQWQELAETVREHQFRYYIKDAPIISDAEFDALFNELLALEERHPELRVADSPTQ 69
Query: 116 TVG 118
VG
Sbjct: 70 LVG 72
>gi|319655032|ref|ZP_08009103.1| DNA ligase [Bacillus sp. 2_A_57_CT2]
gi|317393299|gb|EFV74066.1| DNA ligase [Bacillus sp. 2_A_57_CT2]
Length = 668
Score = 97.6 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 30/65 (46%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ A V+ L + + Y+ LD P D YDR+ L L+ QFPEL ED P
Sbjct: 1 MDLQLAEKRVKDLHNLLNQYNYEYHVLDQPSVPDAEYDRLMRDLIELEGQFPELKTEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|165976722|ref|YP_001652315.1| NAD-dependent DNA ligase LigA [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|190359223|sp|B0BQN6|DNLJ_ACTPJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|165876823|gb|ABY69871.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
Length = 682
Score = 97.6 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++E L + ++ +Y+ LDNPL D YDR+ L L+ Q PE D P VG
Sbjct: 16 AQLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITADSPTQRVG 73
>gi|254508455|ref|ZP_05120575.1| DNA ligase, NAD-dependent [Vibrio parahaemolyticus 16]
gi|219548665|gb|EED25670.1| DNA ligase, NAD-dependent [Vibrio parahaemolyticus 16]
Length = 669
Score = 97.6 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 26/62 (41%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ ++ L + +H YY D P D YDR+ L L+ Q P L D P
Sbjct: 3 QQIQEKLNQLRESLHYHGIKYYVEDAPEIPDAEYDRLMRELIELEAQNPNLISVDSPSQR 62
Query: 117 VG 118
VG
Sbjct: 63 VG 64
>gi|116494557|ref|YP_806291.1| NAD-dependent DNA ligase [Lactobacillus casei ATCC 334]
gi|122264017|sp|Q03AC3|DNLJ_LACC3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|116104707|gb|ABJ69849.1| NAD-dependent DNA ligase [Lactobacillus casei ATCC 334]
Length = 674
Score = 97.6 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 33/71 (46%)
Query: 48 AKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
AK + EA EVE L K + YY D P TD +YD L AL+E +P+L
Sbjct: 3 AKPAAQFTLEEAQAEVEKLRKQLNQWRLEYYTKDAPTVTDNVYDDHYRDLQALEEAYPKL 62
Query: 108 FDEDHPWNTVG 118
D P VG
Sbjct: 63 VTPDSPTQEVG 73
>gi|307261779|ref|ZP_07543445.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
gi|306868597|gb|EFN00408.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
Length = 676
Score = 97.6 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++E L + ++ +Y+ LDNPL D YDR+ L L+ Q PE D P VG
Sbjct: 10 AQLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITADSPTQRVG 67
>gi|307250556|ref|ZP_07532498.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 4 str. M62]
gi|306857372|gb|EFM89486.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 4 str. M62]
Length = 682
Score = 97.6 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++E L + ++ +Y+ LDNPL D YDR+ L L+ Q PE D P VG
Sbjct: 16 AQLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITADSPTQRVG 73
>gi|223936891|ref|ZP_03628800.1| DNA ligase, NAD-dependent [bacterium Ellin514]
gi|223894460|gb|EEF60912.1| DNA ligase, NAD-dependent [bacterium Ellin514]
Length = 680
Score = 97.6 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 29/64 (45%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ EA LV+ H YY P +D YDR+ L L+++FP+L D P
Sbjct: 1 MTHNEAKTRHTQLVEEIRGHDNAYYVEAKPTISDQAYDRLYHELLDLEKKFPDLITSDSP 60
Query: 114 WNTV 117
V
Sbjct: 61 SQRV 64
>gi|167770441|ref|ZP_02442494.1| hypothetical protein ANACOL_01786 [Anaerotruncus colihominis DSM
17241]
gi|167667036|gb|EDS11166.1| hypothetical protein ANACOL_01786 [Anaerotruncus colihominis DSM
17241]
Length = 664
Score = 97.6 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 29/64 (45%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
A V+ L + H YY LD P +D YDR+ L L+E FPEL + P
Sbjct: 6 DLESAKRRVQELRTVIEKHNHSYYVLDRPTVSDYEYDRLLHELIDLEEAFPELASDHSPT 65
Query: 115 NTVG 118
VG
Sbjct: 66 RRVG 69
>gi|332880187|ref|ZP_08447868.1| DNA ligase [Capnocytophaga sp. oral taxon 329 str. F0087]
gi|332681836|gb|EGJ54752.1| DNA ligase [Capnocytophaga sp. oral taxon 329 str. F0087]
Length = 670
Score = 97.6 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 27/61 (44%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E ++E L H YY L+ P +D +DR+ L L+ PE D D P V
Sbjct: 4 EVKEQIERLRNELHRHNYNYYVLNAPEISDQEFDRMMRELQDLEAAHPEFDDPDSPTRRV 63
Query: 118 G 118
G
Sbjct: 64 G 64
>gi|301066103|ref|YP_003788126.1| NAD-dependent DNA ligase [Lactobacillus casei str. Zhang]
gi|300438510|gb|ADK18276.1| NAD-dependent DNA ligase [Lactobacillus casei str. Zhang]
Length = 674
Score = 97.6 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 33/71 (46%)
Query: 48 AKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
AK + EA EVE L K + YY D P TD +YD L AL+E +P+L
Sbjct: 3 AKPAAQFTLEEAQAEVEKLRKQLNQWRLEYYTKDAPTVTDNVYDDHYRDLQALEEAYPKL 62
Query: 108 FDEDHPWNTVG 118
D P VG
Sbjct: 63 VTPDSPTQEVG 73
>gi|262165212|ref|ZP_06032949.1| DNA ligase [Vibrio mimicus VM223]
gi|262024928|gb|EEY43596.1| DNA ligase [Vibrio mimicus VM223]
Length = 682
Score = 97.6 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 24/67 (35%)
Query: 52 TSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
+ + L + H YY D P D YDR+ L L+ PEL D
Sbjct: 9 ERFTMSNVEQRLIELRQTLHEHGVRYYVEDAPTIPDAEYDRLMRELLDLEAANPELITPD 68
Query: 112 HPWNTVG 118
P VG
Sbjct: 69 SPSLRVG 75
>gi|229523238|ref|ZP_04412645.1| DNA ligase [Vibrio cholerae TM 11079-80]
gi|229339601|gb|EEO04616.1| DNA ligase [Vibrio cholerae TM 11079-80]
Length = 669
Score = 97.6 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 24/62 (38%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ + L K H YY D P D YDR+ L L+ PEL D P
Sbjct: 2 SDVAQRLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELMSSDSPSLR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|229525582|ref|ZP_04414987.1| DNA ligase [Vibrio cholerae bv. albensis VL426]
gi|229339163|gb|EEO04180.1| DNA ligase [Vibrio cholerae bv. albensis VL426]
Length = 669
Score = 97.6 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 25/60 (41%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L +I H YY D P D YDR+ L L+ PEL D P VG
Sbjct: 4 VEQKLTELRQILHEHGVRYYVEDAPTIPDAEYDRLMRELLELEAAHPELMSSDSPSLRVG 63
>gi|145593768|ref|YP_001158065.1| DNA ligase, NAD-dependent [Salinispora tropica CNB-440]
gi|190359283|sp|A4X487|DNLJ_SALTO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|145303105|gb|ABP53687.1| DNA ligase, NAD-dependent [Salinispora tropica CNB-440]
Length = 711
Score = 97.6 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 26/60 (43%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
A L + HQ YY LD P +D +D L AL+ +FP L D P VG
Sbjct: 26 ARERHATLSRELTEHQYRYYVLDAPTISDAAFDEQLRELAALEAEFPALRTPDSPTQRVG 85
>gi|191637997|ref|YP_001987163.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Lactobacillus
casei BL23]
gi|254781352|sp|B3WD54|DNLJ_LACCB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|190712299|emb|CAQ66305.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Lactobacillus
casei BL23]
gi|327382073|gb|AEA53549.1| DNA ligase [Lactobacillus casei LC2W]
gi|327385217|gb|AEA56691.1| DNA ligase [Lactobacillus casei BD-II]
Length = 674
Score = 97.6 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 33/71 (46%)
Query: 48 AKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
AK + EA EVE L K + YY D P TD +YD L AL+E +P+L
Sbjct: 3 AKPAAQFTLEEAQAEVEKLRKQLNQWRLEYYTKDAPTVTDNVYDDHYRDLQALEEAYPKL 62
Query: 108 FDEDHPWNTVG 118
D P VG
Sbjct: 63 VTPDSPTQEVG 73
>gi|118470314|ref|YP_886705.1| NAD-dependent DNA ligase LigA [Mycobacterium smegmatis str. MC2
155]
gi|166216211|sp|A0QUW7|DNLJ_MYCS2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|118171601|gb|ABK72497.1| DNA ligase, NAD-dependent [Mycobacterium smegmatis str. MC2 155]
Length = 701
Score = 97.6 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 28/62 (45%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ + L HQ YY D P+ +D +D++ L AL++ PEL D P
Sbjct: 19 ADERRRWQELADEVREHQFRYYVKDAPIISDAEFDKLLRELQALEDAHPELRTPDSPTQL 78
Query: 117 VG 118
VG
Sbjct: 79 VG 80
>gi|326317205|ref|YP_004234877.1| DNA ligase, NAD-dependent [Acidovorax avenae subsp. avenae ATCC
19860]
gi|323374041|gb|ADX46310.1| DNA ligase, NAD-dependent [Acidovorax avenae subsp. avenae ATCC
19860]
Length = 732
Score = 97.6 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 25/72 (34%)
Query: 46 DKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFP 105
D E V L YY LD P D YDRV + L AL+ P
Sbjct: 6 DLFSAPAQDDPEELGRRVAALRAQLHQWAHQYYVLDAPTVPDAEYDRVFQALQALEAAHP 65
Query: 106 ELFDEDHPWNTV 117
EL D P V
Sbjct: 66 ELVTPDSPTQRV 77
>gi|239631844|ref|ZP_04674875.1| NAD-dependent DNA ligase [Lactobacillus paracasei subsp. paracasei
8700:2]
gi|239526309|gb|EEQ65310.1| NAD-dependent DNA ligase [Lactobacillus paracasei subsp. paracasei
8700:2]
Length = 674
Score = 97.6 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 33/71 (46%)
Query: 48 AKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
AK + EA EVE L K + YY D P TD +YD L AL+E +P+L
Sbjct: 3 AKPAAQFTLEEAQAEVEKLRKQLNQWRLEYYTKDAPTVTDNVYDDHYRDLQALEEAYPKL 62
Query: 108 FDEDHPWNTVG 118
D P VG
Sbjct: 63 VTPDSPTQEVG 73
>gi|189219712|ref|YP_001940353.1| NAD-dependent DNA ligase [Methylacidiphilum infernorum V4]
gi|254781365|sp|B3DWU2|DNLJ_METI4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|189186570|gb|ACD83755.1| NAD-dependent DNA ligase [Methylacidiphilum infernorum V4]
Length = 689
Score = 97.6 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 34/72 (47%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
KA + SL E + LVK+ + YY +PL +D YD + L+ L++ PE
Sbjct: 18 KAPSLDSLGYEEIKKRHDELVKLIRKYDYAYYVEAHPLVSDQEYDNLYHELETLEKLHPE 77
Query: 107 LFDEDHPWNTVG 118
L D P +G
Sbjct: 78 LITPDSPTQRIG 89
>gi|153826197|ref|ZP_01978864.1| DNA ligase [Vibrio cholerae MZO-2]
gi|149740057|gb|EDM54226.1| DNA ligase [Vibrio cholerae MZO-2]
Length = 669
Score = 97.6 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 24/62 (38%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ + L K H YY D P D YDR+ L L+ PEL D P
Sbjct: 2 SDVAQRLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELMSSDSPSLR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|303250616|ref|ZP_07336813.1| NAD-dependent DNA ligase LigA [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|307252937|ref|ZP_07534825.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
gi|302650604|gb|EFL80763.1| NAD-dependent DNA ligase LigA [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306859575|gb|EFM91600.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
Length = 682
Score = 97.6 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++E L + ++ +Y+ LDNPL D YDR+ L L+ Q PE D P VG
Sbjct: 16 AQLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITADSPTQRVG 73
>gi|229529935|ref|ZP_04419325.1| DNA ligase [Vibrio cholerae 12129(1)]
gi|229333709|gb|EEN99195.1| DNA ligase [Vibrio cholerae 12129(1)]
gi|327483693|gb|AEA78100.1| DNA ligase [Vibrio cholerae LMA3894-4]
Length = 669
Score = 97.6 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 24/62 (38%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ + L K H YY D P D YDR+ L L+ PEL D P
Sbjct: 2 SDVAQRLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELMSSDSPSLR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|297578580|ref|ZP_06940508.1| DNA ligase [Vibrio cholerae RC385]
gi|297536174|gb|EFH75007.1| DNA ligase [Vibrio cholerae RC385]
Length = 669
Score = 97.2 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 25/60 (41%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L +I H YY D P D YDR+ L L+ PEL D P VG
Sbjct: 4 VEQKLTELRQILHEHGVRYYVEDAPTIPDAEYDRLMRELLELEAAHPELMSSDSPSLRVG 63
>gi|183179445|ref|ZP_02957656.1| DNA ligase [Vibrio cholerae MZO-3]
gi|183012856|gb|EDT88156.1| DNA ligase [Vibrio cholerae MZO-3]
Length = 669
Score = 97.2 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 24/62 (38%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ + L K H YY D P D YDR+ L L+ PEL D P
Sbjct: 2 SDVAQRLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELMSSDSPSLR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|28199807|ref|NP_780121.1| NAD-dependent DNA ligase LigA [Xylella fastidiosa Temecula1]
gi|182682559|ref|YP_001830719.1| NAD-dependent DNA ligase LigA [Xylella fastidiosa M23]
gi|81438262|sp|Q87A88|DNLJ_XYLFT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254782314|sp|B2I9S4|DNLJ_XYLF2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|28057928|gb|AAO29770.1| DNA ligase [Xylella fastidiosa Temecula1]
gi|182632669|gb|ACB93445.1| DNA ligase, NAD-dependent [Xylella fastidiosa M23]
gi|307578838|gb|ADN62807.1| NAD-dependent DNA ligase LigA [Xylella fastidiosa subsp. fastidiosa
GB514]
Length = 831
Score = 97.2 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
L + E+ ++ A +H Y+ LD P D YDR+ LDAL+ +P+L D P
Sbjct: 4 LDPAQRAAELRRRLQEANYH---YHVLDQPRIPDADYDRMLRELDALEATYPDLATPDSP 60
Query: 114 WNTVGY 119
VG+
Sbjct: 61 TQRVGH 66
>gi|294661389|ref|YP_003573265.1| hypothetical protein Aasi_1926 [Candidatus Amoebophilus asiaticus
5a2]
gi|254781251|sp|C3L496|DNLJ_AMOA5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|227336540|gb|ACP21137.1| hypothetical protein Aasi_1926 [Candidatus Amoebophilus asiaticus
5a2]
Length = 671
Score = 97.2 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K +A E++ L + +H K YY P +D +D++ E+L AL+ QFP+L + P
Sbjct: 1 MDKEQARKEIKRLTALVAYHNKLYYEEAQPEISDYEFDQLLEKLIALENQFPDLRLPNSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|71898271|ref|ZP_00680445.1| NAD-dependent DNA ligase [Xylella fastidiosa Ann-1]
gi|71732010|gb|EAO34067.1| NAD-dependent DNA ligase [Xylella fastidiosa Ann-1]
Length = 831
Score = 97.2 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
L + E+ ++ A +H Y+ LD P D YDR+ LDAL+ +P+L D P
Sbjct: 4 LDPAQRAAELRRRLQEANYH---YHVLDQPRIPDADYDRMLRELDALEATYPDLATPDSP 60
Query: 114 WNTVGY 119
VG+
Sbjct: 61 TQRVGH 66
>gi|172036733|ref|YP_001803234.1| DNA ligase [Cyanothece sp. ATCC 51142]
gi|254781304|sp|B1WZL6|DNLJ_CYAA5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|171698187|gb|ACB51168.1| DNA ligase [Cyanothece sp. ATCC 51142]
Length = 676
Score = 97.2 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 31/61 (50%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E V L + YY LD+P+ D +YD++ LD+L+++ P+L D P V
Sbjct: 6 EIKQRVTQLRQQLQKANYAYYVLDDPIMEDAVYDQLYRELDSLEKEHPQLITPDSPTQRV 65
Query: 118 G 118
G
Sbjct: 66 G 66
>gi|254226208|ref|ZP_04919802.1| DNA ligase [Vibrio cholerae V51]
gi|125621244|gb|EAZ49584.1| DNA ligase [Vibrio cholerae V51]
Length = 669
Score = 97.2 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 24/62 (38%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ + L K H YY D P D YDR+ L L+ PEL D P
Sbjct: 2 SDVAQRLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELMSSDSPSLR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|15640987|ref|NP_230618.1| NAD-dependent DNA ligase LigA [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|153822692|ref|ZP_01975359.1| DNA ligase [Vibrio cholerae B33]
gi|229510900|ref|ZP_04400379.1| DNA ligase [Vibrio cholerae B33]
gi|229518021|ref|ZP_04407465.1| DNA ligase [Vibrio cholerae RC9]
gi|229608449|ref|YP_002879097.1| NAD-dependent DNA ligase LigA [Vibrio cholerae MJ-1236]
gi|254291846|ref|ZP_04962629.1| DNA ligase [Vibrio cholerae AM-19226]
gi|254848101|ref|ZP_05237451.1| NAD-dependent DNA ligase LigA [Vibrio cholerae MO10]
gi|255744753|ref|ZP_05418704.1| DNA ligase [Vibrio cholera CIRS 101]
gi|262151242|ref|ZP_06028378.1| DNA ligase [Vibrio cholerae INDRE 91/1]
gi|81545212|sp|Q9KTD1|DNLJ_VIBCH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|9655431|gb|AAF94133.1| DNA ligase [Vibrio cholerae O1 biovar El Tor str. N16961]
gi|126519773|gb|EAZ76996.1| DNA ligase [Vibrio cholerae B33]
gi|150422206|gb|EDN14170.1| DNA ligase [Vibrio cholerae AM-19226]
gi|229344736|gb|EEO09710.1| DNA ligase [Vibrio cholerae RC9]
gi|229350865|gb|EEO15806.1| DNA ligase [Vibrio cholerae B33]
gi|229371104|gb|ACQ61527.1| DNA ligase [Vibrio cholerae MJ-1236]
gi|254843806|gb|EET22220.1| NAD-dependent DNA ligase LigA [Vibrio cholerae MO10]
gi|255737784|gb|EET93178.1| DNA ligase [Vibrio cholera CIRS 101]
gi|262030933|gb|EEY49561.1| DNA ligase [Vibrio cholerae INDRE 91/1]
Length = 669
Score = 97.2 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 24/62 (38%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ + L K H YY D P D YDR+ L L+ PEL D P
Sbjct: 2 SDVAQRLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELMSSDSPSLR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|323341293|ref|ZP_08081538.1| NAD-dependent DNA ligase LigA [Lactobacillus ruminis ATCC 25644]
gi|323091287|gb|EFZ33914.1| NAD-dependent DNA ligase LigA [Lactobacillus ruminis ATCC 25644]
Length = 671
Score = 97.2 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 34/65 (52%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K EA E+E L + + YY LD P D +YD +RL L+ +FPEL +D P
Sbjct: 1 MDKEEAKKELESLREKLTKWSREYYVLDAPTVEDHVYDENYKRLLELEAKFPELVTKDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SQRVG 65
>gi|71899829|ref|ZP_00681979.1| NAD-dependent DNA ligase [Xylella fastidiosa Ann-1]
gi|254782317|sp|B0U5G7|DNLJ_XYLFM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|71730420|gb|EAO32501.1| NAD-dependent DNA ligase [Xylella fastidiosa Ann-1]
Length = 831
Score = 97.2 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
L + E+ ++ A +H Y+ LD P D YDR+ LDAL+ +P+L D P
Sbjct: 4 LDPAQRAAELRRRLQEANYH---YHVLDQPRIPDADYDRMLRELDALEATYPDLATPDSP 60
Query: 114 WNTVGY 119
VG+
Sbjct: 61 TQRVGH 66
>gi|78357136|ref|YP_388585.1| DNA ligase, NAD-dependent [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
gi|123768784|sp|Q30ZK6|DNLJ_DESDG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|78219541|gb|ABB38890.1| DNA ligase, NAD-dependent [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
Length = 705
Score = 97.2 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
+ V + +E L + +H YY +D P +D YD + L L+E+ PE
Sbjct: 4 RGAPVKQ-DSAKVEQRMEELRTLLEYHGHRYYVMDEPEISDAEYDALFRELVRLEEEHPE 62
Query: 107 LFDEDHPWNTVG 118
P + VG
Sbjct: 63 HIHPGSPTHKVG 74
>gi|71275191|ref|ZP_00651478.1| NAD-dependent DNA ligase [Xylella fastidiosa Dixon]
gi|170731182|ref|YP_001776615.1| NAD-dependent DNA ligase LigA [Xylella fastidiosa M12]
gi|71164000|gb|EAO13715.1| NAD-dependent DNA ligase [Xylella fastidiosa Dixon]
gi|167965975|gb|ACA12985.1| DNA ligase (NAD(+)) [Xylella fastidiosa M12]
Length = 837
Score = 97.2 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
L + E+ ++ A +H Y+ LD P D YDR+ LDAL+ +P+L D P
Sbjct: 10 LDPAQRAAELRRRLQEANYH---YHVLDQPRIPDADYDRMLRELDALEATYPDLATPDSP 66
Query: 114 WNTVGY 119
VG+
Sbjct: 67 TQRVGH 72
>gi|269792727|ref|YP_003317631.1| DNA ligase, NAD-dependent [Thermanaerovibrio acidaminovorans DSM
6589]
gi|269100362|gb|ACZ19349.1| DNA ligase, NAD-dependent [Thermanaerovibrio acidaminovorans DSM
6589]
Length = 673
Score = 97.2 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 32/64 (50%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + A +E L ++ HH + YY+ ++P TD YD + L L+ FP+L D P
Sbjct: 1 MDRSAARSRMEELAELIRHHDRLYYQENSPEITDQEYDALFRELVDLERSFPDLRLPDSP 60
Query: 114 WNTV 117
V
Sbjct: 61 TLRV 64
>gi|153872826|ref|ZP_02001606.1| NAD-dependent DNA ligase [Beggiatoa sp. PS]
gi|152070708|gb|EDN68394.1| NAD-dependent DNA ligase [Beggiatoa sp. PS]
Length = 670
Score = 97.2 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 26/61 (42%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+ + L +YY LD P D YD++ L AL+E +P L D P V
Sbjct: 6 QIQQQATQLRDTLNKQNYYYYVLDEPRIPDSEYDKLMRELHALEENYPALITADSPTQRV 65
Query: 118 G 118
G
Sbjct: 66 G 66
>gi|81373659|sp|Q5YRS7|DNLJ2_NOCFA RecName: Full=DNA ligase 2; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] 2
gi|54017744|dbj|BAD59114.1| putative DNA ligase [Nocardia farcinica IFM 10152]
Length = 683
Score = 97.2 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L + HQ YY D P+ +DG +D + L L+++ P+L D P VG
Sbjct: 2 RWQRLAEEVREHQFRYYVRDAPIISDGEFDALLRELQELEDRHPDLRTPDSPTQLVG 58
>gi|239906999|ref|YP_002953740.1| NAD-dependent DNA ligase [Desulfovibrio magneticus RS-1]
gi|239796865|dbj|BAH75854.1| NAD-dependent DNA ligase [Desulfovibrio magneticus RS-1]
Length = 704
Score = 97.2 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 27/59 (45%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L + + YY LD+P D YD + L AL+E PEL D + P VG
Sbjct: 10 AARLRELRDLIHEYDYRYYVLDDPTVEDAAYDALYRELKALEEAHPELADPNSPTRRVG 68
>gi|291278945|ref|YP_003495780.1| NAD-dependent DNA ligase [Deferribacter desulfuricans SSM1]
gi|290753647|dbj|BAI80024.1| NAD-dependent DNA ligase [Deferribacter desulfuricans SSM1]
Length = 663
Score = 97.2 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 34/63 (53%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ E + LV +H YY L++P+ +D YD++ +RL ++ ++PE+ P
Sbjct: 3 ESILKEYQKLVDEINYHDYRYYVLNDPVISDYEYDQLYKRLKEIESKYPEIISPYSPTQR 62
Query: 117 VGY 119
VGY
Sbjct: 63 VGY 65
>gi|33151983|ref|NP_873336.1| NAD-dependent DNA ligase LigA [Haemophilus ducreyi 35000HP]
gi|81423646|sp|Q7VMX7|DNLJ_HAEDU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|33148205|gb|AAP95725.1| DNA ligase [Haemophilus ducreyi 35000HP]
Length = 686
Score = 97.2 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 34/66 (51%)
Query: 53 SLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDH 112
LS ++E L ++ Y+ L+NPL D YDR+ +L +++Q+PEL D
Sbjct: 8 ELSNNITPTQLEALRDQLREYEYHYHVLNNPLVPDAEYDRLINQLKNIEQQYPELITPDS 67
Query: 113 PWNTVG 118
P VG
Sbjct: 68 PTQRVG 73
>gi|307326508|ref|ZP_07605703.1| DNA ligase, NAD-dependent [Streptomyces violaceusniger Tu 4113]
gi|306887916|gb|EFN18907.1| DNA ligase, NAD-dependent [Streptomyces violaceusniger Tu 4113]
Length = 732
Score = 97.2 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 28/62 (45%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
E L + H+ YY D P+ +D +D++ L+AL+E+ P L D P
Sbjct: 10 PAEVRERHARLAEQIEEHRFRYYVKDAPVVSDAEFDKLMRELEALEEETPALRTPDSPTQ 69
Query: 116 TV 117
V
Sbjct: 70 KV 71
>gi|150397271|ref|YP_001327738.1| NAD-dependent DNA ligase LigA [Sinorhizobium medicae WSM419]
gi|166216245|sp|A6UB73|DNLJ_SINMW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|150028786|gb|ABR60903.1| DNA ligase, NAD-dependent [Sinorhizobium medicae WSM419]
Length = 717
Score = 97.2 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 39/74 (52%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
L++ K V +++ EA E+ +L H Y+ D+P +D YD + R D ++E+F
Sbjct: 2 LNQRKPVEQMTEAEAAEELAFLAAELSRHDMLYHGKDDPEISDADYDALKRRNDLIEERF 61
Query: 105 PELFDEDHPWNTVG 118
P L ED P VG
Sbjct: 62 PALIREDSPSQKVG 75
>gi|325675870|ref|ZP_08155554.1| DNA ligase [Rhodococcus equi ATCC 33707]
gi|325553841|gb|EGD23519.1| DNA ligase [Rhodococcus equi ATCC 33707]
Length = 711
Score = 97.2 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 43 SWLDKAKKVTSL-SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQ 101
+ + V + + E + L ++ +HQ YY LD+P+ +DG +D++ L+AL+
Sbjct: 8 ASVTSQPDVEVVPASAEDRERWQELAEVVRNHQFRYYVLDSPIVSDGEFDQLFGELNALE 67
Query: 102 EQFPELFDEDHPWNTVG 118
E+ P+L D P VG
Sbjct: 68 ERHPDLRTPDSPTQLVG 84
>gi|194333271|ref|YP_002015131.1| DNA ligase, NAD-dependent [Prosthecochloris aestuarii DSM 271]
gi|254781391|sp|B4S4Y6|DNLJ_PROA2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|194311089|gb|ACF45484.1| DNA ligase, NAD-dependent [Prosthecochloris aestuarii DSM 271]
Length = 675
Score = 97.2 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 33/65 (50%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + +A+ E+ L H YY L P +D +D+ ERL AL++ FP+L D P
Sbjct: 1 MQRKDALKEIARLRDELNRHNYRYYVLAQPEISDYAFDQELERLIALEKAFPDLVTPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SQRVG 65
>gi|319951546|ref|ZP_08025350.1| NAD-dependent DNA ligase LigA [Dietzia cinnamea P4]
gi|319434794|gb|EFV90110.1| NAD-dependent DNA ligase LigA [Dietzia cinnamea P4]
Length = 726
Score = 97.2 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 41 LESWLDKAKKVTSLS-KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDA 99
+ D + V + E E L + HQ YY D P+ +D +DR+ L A
Sbjct: 1 MSQASDSTEPVGTGDIPPEIRQEWTELAETVRDHQFRYYVKDAPIVSDAEFDRLFGELQA 60
Query: 100 LQEQFPELFDEDHPWNTVG 118
L+E++P L D P VG
Sbjct: 61 LEEKYPALRTADSPTQLVG 79
>gi|319897423|ref|YP_004135620.1| DNA ligase, nad(+)-dependent [Haemophilus influenzae F3031]
gi|317432929|emb|CBY81295.1| DNA ligase, NAD(+)-dependent [Haemophilus influenzae F3031]
Length = 679
Score = 97.2 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L K ++ Y+ LDNP D YDR+ +L AL+ + PE D P VG
Sbjct: 13 IQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPTQRVG 72
>gi|150021387|ref|YP_001306741.1| DNA ligase, NAD-dependent [Thermosipho melanesiensis BI429]
gi|190359297|sp|A6LN55|DNLJ_THEM4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|149793908|gb|ABR31356.1| DNA ligase, NAD-dependent [Thermosipho melanesiensis BI429]
Length = 662
Score = 97.2 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 33/60 (55%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E+E L K +H YY L +P+ +D YDR+ ++L L++++P+ + P VG
Sbjct: 4 IKEEIERLRKEIEYHNYRYYVLADPIISDEEYDRLLKKLIELEKKYPKFSSPNSPTQKVG 63
>gi|77165170|ref|YP_343695.1| DNA ligase (NAD+) [Nitrosococcus oceani ATCC 19707]
gi|254433594|ref|ZP_05047102.1| DNA ligase, NAD-dependent [Nitrosococcus oceani AFC27]
gi|123730661|sp|Q3JAI1|DNLJ_NITOC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|76883484|gb|ABA58165.1| DNA ligase (NAD+) [Nitrosococcus oceani ATCC 19707]
gi|207089927|gb|EDZ67198.1| DNA ligase, NAD-dependent [Nitrosococcus oceani AFC27]
Length = 675
Score = 97.2 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 33/63 (52%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
A ++ L ++ ++ YY ++NPL D YDR+ L AL+E +PEL D P
Sbjct: 4 PAPAKERIQALKELINNYDYAYYVVNNPLVPDSEYDRLIRELQALEENYPELITLDSPTQ 63
Query: 116 TVG 118
VG
Sbjct: 64 RVG 66
>gi|312796238|ref|YP_004029160.1| NAD-dependent DNA ligase [Burkholderia rhizoxinica HKI 454]
gi|312168013|emb|CBW75016.1| NAD-dependent DNA ligase (EC 6.5.1.2) [Burkholderia rhizoxinica HKI
454]
Length = 681
Score = 97.2 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 24/59 (40%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+L YY LD P D YD++ + L+ ++ P+L D P VG
Sbjct: 14 AERAAWLRTELDRANHAYYVLDRPEIPDAEYDKLFKELEQIEADHPDLITPDSPTQRVG 72
>gi|229846132|ref|ZP_04466244.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 7P49H1]
gi|229811136|gb|EEP46853.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 7P49H1]
Length = 670
Score = 97.2 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L K ++ Y+ LDNP D YDR+ +L AL+ + PE D P VG
Sbjct: 4 IQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPTQRVG 63
>gi|295676829|ref|YP_003605353.1| DNA ligase, NAD-dependent [Burkholderia sp. CCGE1002]
gi|295436672|gb|ADG15842.1| DNA ligase, NAD-dependent [Burkholderia sp. CCGE1002]
Length = 687
Score = 97.2 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 29/68 (42%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V S + +L H YY LD P D YD++ + L+ ++ + P+L
Sbjct: 6 VPSFATSAPAERAAWLRAELEHANYAYYVLDQPDLPDAEYDKLFKELERIEAEHPDLIVP 65
Query: 111 DHPWNTVG 118
D P VG
Sbjct: 66 DSPTQRVG 73
>gi|284053772|ref|ZP_06383982.1| NAD-dependent DNA ligase LigA [Arthrospira platensis str. Paraca]
Length = 683
Score = 97.2 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 29/61 (47%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E ++ L YY LD P+ DG+YDR+ L L+ Q+PEL D P V
Sbjct: 11 EISQKLAQLRLTVQRASYAYYVLDAPIMEDGVYDRLYRELQELENQYPELISPDSPTQRV 70
Query: 118 G 118
G
Sbjct: 71 G 71
>gi|260581847|ref|ZP_05849643.1| DNA ligase, NAD-dependent [Haemophilus influenzae NT127]
gi|260095040|gb|EEW78932.1| DNA ligase, NAD-dependent [Haemophilus influenzae NT127]
Length = 679
Score = 97.2 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L K ++ Y+ LDNP D YDR+ +L AL+ + PE D P VG
Sbjct: 13 IQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPTQRVG 72
>gi|148826285|ref|YP_001291038.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae PittEE]
gi|166215778|sp|A5UD04|DNLJ_HAEIE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|148716445|gb|ABQ98655.1| DNA ligase [Haemophilus influenzae PittEE]
Length = 670
Score = 96.8 bits (240), Expect = 7e-19, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L K ++ Y+ LDNP D YDR+ +L AL+ + PE D P VG
Sbjct: 4 IQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPTQRVG 63
>gi|312140511|ref|YP_004007847.1| DNA ligase (nad+) liga [Rhodococcus equi 103S]
gi|311889850|emb|CBH49167.1| DNA ligase (NAD+) LigA [Rhodococcus equi 103S]
Length = 712
Score = 96.8 bits (240), Expect = 7e-19, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 43 SWLDKAKKVTSL-SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQ 101
+ + V + + E + L ++ +HQ YY LD+P+ +DG +D++ L+AL+
Sbjct: 8 ASVTSQPDVEVVPASAEDRERWQELAEVVRNHQFRYYVLDSPIVSDGEFDQLFGELNALE 67
Query: 102 EQFPELFDEDHPWNTVG 118
E+ P+L D P VG
Sbjct: 68 ERHPDLRTPDSPTQLVG 84
>gi|226941791|ref|YP_002796865.1| DnlJ [Laribacter hongkongensis HLHK9]
gi|254781355|sp|C1D4R5|DNLJ_LARHH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|226716718|gb|ACO75856.1| DnlJ [Laribacter hongkongensis HLHK9]
Length = 692
Score = 96.8 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 27/65 (41%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ L + + YY LD P D YDR+ L+AL+ PEL D P
Sbjct: 1 MTDLNPTARAAGLRALLHRYNHEYYVLDAPSVPDAEYDRLFRELEALEAAHPELASADSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TRRVG 65
>gi|167837047|ref|ZP_02463930.1| DNA ligase, NAD-dependent [Burkholderia thailandensis MSMB43]
Length = 691
Score = 96.8 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 24/62 (38%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ +L YY LD P D YDR+ L ++ + P+L D P
Sbjct: 11 SQPAKRAAWLRAELERANYAYYVLDQPDLPDAEYDRLFVELQQIEAEHPDLVTPDSPTQR 70
Query: 117 VG 118
VG
Sbjct: 71 VG 72
>gi|148828262|ref|YP_001293015.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae PittGG]
gi|166215779|sp|A5UIM6|DNLJ_HAEIG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|148719504|gb|ABR00632.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae PittGG]
Length = 670
Score = 96.8 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L K ++ Y+ LDNP D YDR+ +L AL+ + PE D P VG
Sbjct: 4 IQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPTQRVG 63
>gi|145636448|ref|ZP_01792116.1| DNA ligase [Haemophilus influenzae PittHH]
gi|145270273|gb|EDK10208.1| DNA ligase [Haemophilus influenzae PittHH]
Length = 670
Score = 96.8 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L K ++ Y+ LDNP D YDR+ +L AL+ + PE D P VG
Sbjct: 4 IQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPTQRVG 63
>gi|226310273|ref|YP_002770167.1| NAD-dependent DNA ligase [Brevibacillus brevis NBRC 100599]
gi|254781268|sp|C0Z4D6|DNLJ_BREBN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|226093221|dbj|BAH41663.1| NAD-dependent DNA ligase [Brevibacillus brevis NBRC 100599]
Length = 671
Score = 96.8 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + A +++ L K H + Y+ D P +D YD++ L L+ FP+L D P
Sbjct: 1 MDRLTAETKIKELAKRIERHNRLYHEEDRPEISDQEYDQLMRELRELETSFPDLQSPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SLRVG 65
>gi|113969850|ref|YP_733643.1| DNA ligase, NAD-dependent [Shewanella sp. MR-4]
gi|113884534|gb|ABI38586.1| DNA ligase, NAD-dependent [Shewanella sp. MR-4]
Length = 690
Score = 96.8 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 32/66 (48%)
Query: 53 SLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDH 112
+++ A ++ L + H YY D P TD YDR+ +RL L+ ++P+ D
Sbjct: 19 AVTPHNAQPLMQALCQSLNEHNIRYYVDDAPSITDSEYDRLMQRLKQLEAEYPQFVAADS 78
Query: 113 PWNTVG 118
P VG
Sbjct: 79 PTQRVG 84
>gi|311067136|ref|YP_003972059.1| NAD-dependent DNA ligase LigA [Bacillus atrophaeus 1942]
gi|310867653|gb|ADP31128.1| NAD-dependent DNA ligase LigA [Bacillus atrophaeus 1942]
Length = 668
Score = 96.8 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 29/65 (44%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K A E L + YY LD P D YD++ + L L+E+ P+L D P
Sbjct: 1 MDKEAAKRRAEDLRSTINQYSYEYYTLDEPSVPDSEYDKLMQELLDLEEEHPDLRTPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|300087757|ref|YP_003758279.1| DNA ligase, NAD-dependent [Dehalogenimonas lykanthroporepellens
BL-DC-9]
gi|299527490|gb|ADJ25958.1| DNA ligase, NAD-dependent [Dehalogenimonas lykanthroporepellens
BL-DC-9]
Length = 687
Score = 96.8 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 30/62 (48%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
EA ++ L K HH YY D P +D YD + L L+ +FPEL ++ P
Sbjct: 2 DEAKKRIDTLRKQITHHNYLYYVKDEPEISDQEYDILFRELQILENEFPELASDESPTKI 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|68057854|gb|AAX88107.1| DNA ligase [Haemophilus influenzae 86-028NP]
Length = 679
Score = 96.8 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L K ++ Y+ LDNP D YDR+ +L AL+ + PE D P VG
Sbjct: 13 IQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPTQRVG 72
>gi|260580185|ref|ZP_05848015.1| DNA ligase, NAD-dependent [Haemophilus influenzae RdAW]
gi|1574651|gb|AAC22753.1| DNA ligase (lig) [Haemophilus influenzae Rd KW20]
gi|260093469|gb|EEW77402.1| DNA ligase, NAD-dependent [Haemophilus influenzae RdAW]
Length = 679
Score = 96.8 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L K ++ Y+ LDNP D YDR+ +L AL+ + PE D P VG
Sbjct: 13 IQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPTQRVG 72
>gi|288554984|ref|YP_003426919.1| NAD-dependent DNA ligase LigA [Bacillus pseudofirmus OF4]
gi|288546144|gb|ADC50027.1| NAD-dependent DNA ligase LigA [Bacillus pseudofirmus OF4]
Length = 668
Score = 96.8 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 35/65 (53%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + EA V+ L + + YY LD PL TD YD++ + L AL+ + PEL ED P
Sbjct: 1 MDRQEAEKRVQTLREKLEEYGYHYYVLDQPLVTDAEYDQLMQELIALEGEHPELVSEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SVRVG 65
>gi|238026897|ref|YP_002911128.1| DNA ligase, NAD-dependent [Burkholderia glumae BGR1]
gi|237876091|gb|ACR28424.1| DNA ligase, NAD-dependent [Burkholderia glumae BGR1]
Length = 747
Score = 96.8 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 24/62 (38%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ +L + YY LD P D YDR+ L ++ + P+ D P
Sbjct: 12 SQPSERAAWLRQELERANHAYYVLDQPELLDAEYDRLFRELQQIEAEHPDFITPDSPTQR 71
Query: 117 VG 118
VG
Sbjct: 72 VG 73
>gi|229512467|ref|ZP_04401940.1| DNA ligase [Vibrio cholerae TMA 21]
gi|229350548|gb|EEO15495.1| DNA ligase [Vibrio cholerae TMA 21]
Length = 669
Score = 96.8 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 25/60 (41%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L +I H YY D P D YDR+ L L+ PEL D P VG
Sbjct: 4 VEQKLTELRQILHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELMSSDSPSLRVG 63
>gi|195940543|ref|ZP_03085925.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str.
EC4024]
Length = 98
Score = 96.8 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ L HH+ Y+ +D P D YDR+ L L+ + PEL D P
Sbjct: 2 ESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|166216287|sp|Q0HK31|DNLJ_SHESM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
Length = 688
Score = 96.8 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 32/66 (48%)
Query: 53 SLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDH 112
+++ A ++ L + H YY D P TD YDR+ +RL L+ ++P+ D
Sbjct: 17 AVTPHNAQPLMQALCQSLNEHNIRYYVDDAPSITDSEYDRLMQRLKQLEAEYPQFVAADS 76
Query: 113 PWNTVG 118
P VG
Sbjct: 77 PTQRVG 82
>gi|161761269|ref|YP_248767.2| NAD-dependent DNA ligase LigA [Haemophilus influenzae 86-028NP]
gi|166215835|sp|Q4QLJ0|DNLJ_HAEI8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|309973429|gb|ADO96630.1| NAD-dependent DNA ligase [Haemophilus influenzae R2846]
Length = 670
Score = 96.8 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L K ++ Y+ LDNP D YDR+ +L AL+ + PE D P VG
Sbjct: 4 IQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPTQRVG 63
>gi|30995424|ref|NP_439257.2| NAD-dependent DNA ligase LigA [Haemophilus influenzae Rd KW20]
gi|145638086|ref|ZP_01793696.1| DNA ligase [Haemophilus influenzae PittII]
gi|166214918|sp|P43813|DNLJ_HAEIN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|145272415|gb|EDK12322.1| DNA ligase [Haemophilus influenzae PittII]
gi|309751252|gb|ADO81236.1| NAD-dependent DNA ligase [Haemophilus influenzae R2866]
Length = 670
Score = 96.8 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L K ++ Y+ LDNP D YDR+ +L AL+ + PE D P VG
Sbjct: 4 IQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPTQRVG 63
>gi|161831535|ref|YP_001596473.1| DNA ligase, NAD-dependent [Coxiella burnetii RSA 331]
gi|190359249|sp|A9NC33|DNLJ_COXBR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|161763402|gb|ABX79044.1| DNA ligase, NAD-dependent [Coxiella burnetii RSA 331]
Length = 670
Score = 96.8 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 26/63 (41%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
+ +E L H YY L P D +YD + L+ L++++PE P
Sbjct: 4 PAKIQKRIERLRHEINDHNYRYYVLSQPTIPDSVYDELFHELEKLEKKYPETITPSSPTQ 63
Query: 116 TVG 118
VG
Sbjct: 64 RVG 66
>gi|319941620|ref|ZP_08015944.1| DNA ligase [Sutterella wadsworthensis 3_1_45B]
gi|319804850|gb|EFW01704.1| DNA ligase [Sutterella wadsworthensis 3_1_45B]
Length = 745
Score = 96.8 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 28/69 (40%)
Query: 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
+LS +A + L YY LD P D YDR L AL+ +FPEL
Sbjct: 48 DAAALSPDQAPARMHQLETELERWNYEYYVLDEPSVPDAEYDRAFNELKALEARFPELKS 107
Query: 110 EDHPWNTVG 118
P VG
Sbjct: 108 RTSPTLRVG 116
>gi|319776649|ref|YP_004139137.1| DNA ligase, NAD(+)-dependent [Haemophilus influenzae F3047]
gi|329124164|ref|ZP_08252711.1| NAD-dependent DNA ligase LigA [Haemophilus aegyptius ATCC 11116]
gi|317451240|emb|CBY87473.1| DNA ligase, NAD(+)-dependent [Haemophilus influenzae F3047]
gi|327467589|gb|EGF13087.1| NAD-dependent DNA ligase LigA [Haemophilus aegyptius ATCC 11116]
Length = 670
Score = 96.8 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L K ++ Y+ LDNP D YDR+ +L AL+ + PE D P VG
Sbjct: 4 IQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPTQRVG 63
>gi|262172020|ref|ZP_06039698.1| DNA ligase [Vibrio mimicus MB-451]
gi|261893096|gb|EEY39082.1| DNA ligase [Vibrio mimicus MB-451]
Length = 670
Score = 96.8 bits (240), Expect = 9e-19, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 23/60 (38%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L + H YY D P D YDR+ L L+ PEL D P VG
Sbjct: 4 VEQRLIELRQTLHEHGVRYYVEDAPTIPDAEYDRLMRELLDLEAANPELITPDSPSLRVG 63
>gi|258627076|ref|ZP_05721872.1| DNA ligase [Vibrio mimicus VM603]
gi|258580594|gb|EEW05547.1| DNA ligase [Vibrio mimicus VM603]
Length = 670
Score = 96.8 bits (240), Expect = 9e-19, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 23/60 (38%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L + H YY D P D YDR+ L L+ PEL D P VG
Sbjct: 4 VEQRLIELRQTLHEHGVRYYVEDAPTIPDAEYDRLMRELLDLEAANPELITPDSPSLRVG 63
>gi|258651684|ref|YP_003200840.1| DNA ligase, NAD-dependent [Nakamurella multipartita DSM 44233]
gi|258554909|gb|ACV77851.1| DNA ligase, NAD-dependent [Nakamurella multipartita DSM 44233]
Length = 736
Score = 96.8 bits (240), Expect = 9e-19, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 45 LDKAKKVTSLS----KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDAL 100
+D + L+ EA L +I Q YY LD P +DG +D V LD L
Sbjct: 5 IDSLPESAELTALGVPPEAAHRHAELTQIITDAQFRYYVLDAPTMSDGEFDTVLRELDGL 64
Query: 101 QEQFPELFDEDHPWNTVG 118
+EQ+P L D P VG
Sbjct: 65 EEQYPSLRTPDSPTQRVG 82
>gi|258621988|ref|ZP_05717017.1| DNA ligase [Vibrio mimicus VM573]
gi|258585741|gb|EEW10461.1| DNA ligase [Vibrio mimicus VM573]
Length = 670
Score = 96.8 bits (240), Expect = 9e-19, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 23/60 (38%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L + H YY D P D YDR+ L L+ PEL D P VG
Sbjct: 4 VEQRLIELRQTLHEHGVRYYVEDAPTIPDAEYDRLMRELLDLEAANPELITPDSPSLRVG 63
>gi|163784741|ref|ZP_02179548.1| DNA ligase (NAD dependent) [Hydrogenivirga sp. 128-5-R1-1]
gi|159879989|gb|EDP73686.1| DNA ligase (NAD dependent) [Hydrogenivirga sp. 128-5-R1-1]
Length = 414
Score = 96.8 bits (240), Expect = 9e-19, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 31 EAKFLPNKRALESWLDKAKKVTSL-SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGL 89
E + + R L + L +K +A + L ++ +H YY L NP+ +D
Sbjct: 7 EKQLIEKTRQLLKI-----SIEDLKTKEDAEKIINDLREVIKYHDWKYYVLANPVISDYE 61
Query: 90 YDRVSERLDALQEQFPELFDEDHPWNTV 117
YD++ L ++++++PEL D P V
Sbjct: 62 YDKLFHLLVSIEKKYPELITADSPTQRV 89
>gi|145630192|ref|ZP_01785974.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae R3021]
gi|144984473|gb|EDJ91896.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae R3021]
Length = 670
Score = 96.8 bits (240), Expect = 9e-19, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L K ++ Y+ LDNP D YDR+ +L AL+ + PE D P VG
Sbjct: 4 IQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPTQRVG 63
>gi|120602570|ref|YP_966970.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris DP4]
gi|166215379|sp|A1VDM7|DNLJ2_DESVV RecName: Full=DNA ligase 2; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] 2
gi|120562799|gb|ABM28543.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris DP4]
Length = 797
Score = 96.8 bits (240), Expect = 9e-19, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 27/63 (42%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
EA L H + YY LD P +D YD + L L+ ++P L DE P
Sbjct: 36 PEEARQRAAQLRADLERHNRLYYELDTPEISDAEYDVLYRELVGLERRWPALRDEASPTQ 95
Query: 116 TVG 118
VG
Sbjct: 96 RVG 98
>gi|241662937|ref|YP_002981297.1| DNA ligase [Ralstonia pickettii 12D]
gi|240864964|gb|ACS62625.1| DNA ligase, NAD-dependent [Ralstonia pickettii 12D]
Length = 813
Score = 96.8 bits (240), Expect = 9e-19, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
+ K + S + EA +L + YY LD P D YDR+ L+AL+ +
Sbjct: 1 MRKIAEPASGTTPEARA--AWLRAELNRYAHEYYVLDQPSVPDAEYDRLYRELEALEAEH 58
Query: 105 PELFDEDHPWNTVG 118
PEL D P VG
Sbjct: 59 PELKTPDSPTLRVG 72
>gi|331695637|ref|YP_004331876.1| DNA ligase [Pseudonocardia dioxanivorans CB1190]
gi|326950326|gb|AEA24023.1| DNA ligase [Pseudonocardia dioxanivorans CB1190]
Length = 812
Score = 96.8 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 31/76 (40%)
Query: 43 SWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQE 102
S + L HQ YY LD P+ +DG +D + L AL+E
Sbjct: 10 STETSTGPAPEPAPDADRERHAALATEVADHQFRYYVLDAPVVSDGQFDELWRELVALEE 69
Query: 103 QFPELFDEDHPWNTVG 118
++P+L D P VG
Sbjct: 70 RYPDLVSPDSPTQKVG 85
>gi|227535466|ref|ZP_03965515.1| DNA ligase (polydeoxyribonucleotide synthase [Lactobacillus
paracasei subsp. paracasei ATCC 25302]
gi|227186876|gb|EEI66943.1| DNA ligase (polydeoxyribonucleotide synthase [Lactobacillus
paracasei subsp. paracasei ATCC 25302]
Length = 674
Score = 96.8 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 32/71 (45%)
Query: 48 AKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
AK + EA EVE L K + YY D P TD +YD L AL+ +P+L
Sbjct: 3 AKPAAQFTLEEAQAEVEKLRKQLNQWRLEYYTKDAPTVTDNVYDDHYRDLQALEAAYPKL 62
Query: 108 FDEDHPWNTVG 118
D P VG
Sbjct: 63 VTPDSPTQEVG 73
>gi|117920017|ref|YP_869209.1| DNA ligase, NAD-dependent [Shewanella sp. ANA-3]
gi|117612349|gb|ABK47803.1| DNA ligase, NAD-dependent [Shewanella sp. ANA-3]
Length = 691
Score = 96.8 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 32/66 (48%)
Query: 53 SLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDH 112
+++ A ++ L + H YY D P TD YDR+ +RL L+ ++P+ D
Sbjct: 19 AVTPHNAQPIMQALCQSLNEHNIRYYVDDAPSITDSEYDRLMQRLKQLEAEYPQFVAADS 78
Query: 113 PWNTVG 118
P VG
Sbjct: 79 PTQRVG 84
>gi|296445905|ref|ZP_06887856.1| DNA ligase, NAD-dependent [Methylosinus trichosporium OB3b]
gi|296256573|gb|EFH03649.1| DNA ligase, NAD-dependent [Methylosinus trichosporium OB3b]
Length = 713
Score = 96.5 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 36 PNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSE 95
P+ R + + V LS A +E L + + + YY+ D+P +D YD + +
Sbjct: 8 PSPR--KRGERERPPVAELSPRRAKLEHSRLAEEIAEYDRRYYQEDDPAISDAEYDALRQ 65
Query: 96 RLDALQEQFPELFDEDHPWNTVG 118
R +AL++ FPEL + TVG
Sbjct: 66 RYEALEKAFPELGGDASLTKTVG 88
>gi|256822391|ref|YP_003146354.1| NAD-dependent DNA ligase [Kangiella koreensis DSM 16069]
gi|256795930|gb|ACV26586.1| DNA ligase, NAD-dependent [Kangiella koreensis DSM 16069]
Length = 667
Score = 96.5 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
E V L ++ YY LD+P D YDR+ L ++ + PEL D P
Sbjct: 2 SELEKRVAELRVTLDNYNHQYYVLDDPSVPDAEYDRLLRELQQIESEHPELISSDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|328956034|ref|YP_004373367.1| DNA ligase, NAD-dependent [Coriobacterium glomerans PW2]
gi|328456358|gb|AEB07552.1| DNA ligase, NAD-dependent [Coriobacterium glomerans PW2]
Length = 752
Score = 96.5 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Query: 46 DKAKKVTSLSKGEA---MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQE 102
A+ ++ A E L ++ +H YY LD P +D +DR+ L ++
Sbjct: 28 STAQPAGHMTSTAAVPPAERAEELRRLLDYHAYRYYALDAPEISDAQFDRLLRELQQIEV 87
Query: 103 QFPELFDEDHPWNTVG 118
+ P+L D VG
Sbjct: 88 EHPDLITPDSYTQRVG 103
>gi|322513636|ref|ZP_08066733.1| NAD-dependent DNA ligase LigA [Actinobacillus ureae ATCC 25976]
gi|322120561|gb|EFX92462.1| NAD-dependent DNA ligase LigA [Actinobacillus ureae ATCC 25976]
Length = 681
Score = 96.5 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 29/58 (50%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++E L + ++ Y+ LDNPL D YDR+ L L+ Q PE D P VG
Sbjct: 16 AQLEALRQKLREYEYHYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITADSPTQRVG 73
>gi|24374425|ref|NP_718468.1| DNA ligase, NAD-dependent [Shewanella oneidensis MR-1]
gi|81460839|sp|Q8ED70|DNLJ_SHEON RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|24348997|gb|AAN55912.1|AE015728_1 DNA ligase, NAD-dependent [Shewanella oneidensis MR-1]
Length = 689
Score = 96.5 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 32/66 (48%)
Query: 53 SLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDH 112
+++ A ++ L + H YY D P TD YDR+ ++L L+ ++P+ D
Sbjct: 17 AVTPQTAQPLMQALSQSLNEHNIRYYVDDAPSITDSEYDRLMQQLKKLEAEYPQFVLADS 76
Query: 113 PWNTVG 118
P VG
Sbjct: 77 PTQRVG 82
>gi|221198328|ref|ZP_03571374.1| DNA ligase, NAD-dependent [Burkholderia multivorans CGD2M]
gi|221208267|ref|ZP_03581271.1| DNA ligase, NAD-dependent [Burkholderia multivorans CGD2]
gi|221171915|gb|EEE04358.1| DNA ligase, NAD-dependent [Burkholderia multivorans CGD2]
gi|221182260|gb|EEE14661.1| DNA ligase, NAD-dependent [Burkholderia multivorans CGD2M]
Length = 691
Score = 96.5 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 22/58 (37%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+L YY LD P D YDR+ L L+ P+L D P VG
Sbjct: 15 ARAAWLRDQLERANHAYYVLDQPDLPDAEYDRLFRELQQLESDHPDLVTPDSPTQRVG 72
>gi|221215451|ref|ZP_03588415.1| DNA ligase, NAD-dependent [Burkholderia multivorans CGD1]
gi|221164635|gb|EED97117.1| DNA ligase, NAD-dependent [Burkholderia multivorans CGD1]
Length = 691
Score = 96.5 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 22/58 (37%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+L YY LD P D YDR+ L L+ P+L D P VG
Sbjct: 15 ARAAWLRDQLERANHAYYVLDQPDLPDAEYDRLFRELQQLESDHPDLVTPDSPTQRVG 72
>gi|166216286|sp|A0KVI4|DNLJ_SHESA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
Length = 689
Score = 96.5 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 32/66 (48%)
Query: 53 SLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDH 112
+++ A ++ L + H YY D P TD YDR+ +RL L+ ++P+ D
Sbjct: 17 AVTPHNAQPIMQALCQSLNEHNIRYYVDDAPSITDSEYDRLMQRLKQLEAEYPQFVAADS 76
Query: 113 PWNTVG 118
P VG
Sbjct: 77 PTQRVG 82
>gi|291569184|dbj|BAI91456.1| DNA ligase [Arthrospira platensis NIES-39]
Length = 683
Score = 96.5 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 30/61 (49%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E ++ L YY LD+P+ DG+YDR+ L L+ Q+PEL D P V
Sbjct: 11 EISQKLAQLRLTVQRASYAYYVLDDPIMEDGVYDRLYRELQELENQYPELISPDSPTQRV 70
Query: 118 G 118
G
Sbjct: 71 G 71
>gi|161524425|ref|YP_001579437.1| DNA ligase, NAD-dependent [Burkholderia multivorans ATCC 17616]
gi|189350820|ref|YP_001946448.1| NAD-dependent DNA ligase [Burkholderia multivorans ATCC 17616]
gi|254781276|sp|A9AIK9|DNLJ_BURM1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|160341854|gb|ABX14940.1| DNA ligase, NAD-dependent [Burkholderia multivorans ATCC 17616]
gi|189334842|dbj|BAG43912.1| NAD-dependent DNA ligase [Burkholderia multivorans ATCC 17616]
Length = 691
Score = 96.5 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 23/58 (39%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ +L YY LD P D YDR+ L L+ P+L D P VG
Sbjct: 15 VRAAWLRDQLERANYAYYVLDQPDLPDAEYDRLFRELQQLESDHPDLVTPDSPTQRVG 72
>gi|254976908|ref|ZP_05273380.1| DNA ligase [Clostridium difficile QCD-66c26]
gi|255308381|ref|ZP_05352552.1| DNA ligase [Clostridium difficile ATCC 43255]
gi|255316048|ref|ZP_05357631.1| DNA ligase [Clostridium difficile QCD-76w55]
gi|255518705|ref|ZP_05386381.1| DNA ligase [Clostridium difficile QCD-97b34]
gi|255651827|ref|ZP_05398729.1| DNA ligase [Clostridium difficile QCD-37x79]
gi|306521614|ref|ZP_07407961.1| DNA ligase [Clostridium difficile QCD-32g58]
Length = 674
Score = 96.5 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E+ L++ +H + YY D+P +D YD++ + L +L+E+ PEL D P N VG
Sbjct: 3 VKDEINKLIETINYHNERYYNQDSPEISDYEYDKLMKELISLEEEHPELKRIDSPTNRVG 62
>gi|328887795|emb|CAJ70206.2| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Clostridium
difficile]
Length = 674
Score = 96.5 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E+ L++ +H + YY D+P +D YD++ + L +L+E+ PEL D P N VG
Sbjct: 3 VKDEINKLIETINYHNERYYNQDSPEISDYEYDKLMKELISLEEEHPELKRIDSPTNRVG 62
>gi|255657267|ref|ZP_05402676.1| DNA ligase [Clostridium difficile QCD-23m63]
Length = 674
Score = 96.5 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E+ L++ +H + YY D+P +D YD++ + L +L+E+ PEL D P N VG
Sbjct: 3 IKDEINKLIETINYHNERYYNQDSPEISDYEYDKLMKELISLEEEHPELKRIDSPTNRVG 62
>gi|255102476|ref|ZP_05331453.1| DNA ligase [Clostridium difficile QCD-63q42]
Length = 674
Score = 96.5 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E+ L++ +H + YY D+P +D YD++ + L +L+E+ PEL D P N VG
Sbjct: 3 IKDEINKLIETINYHNERYYNQDSPEISDYEYDKLMKELISLEEEHPELKRIDSPTNRVG 62
>gi|294665962|ref|ZP_06731226.1| DNA ligase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
10535]
gi|292604265|gb|EFF47652.1| DNA ligase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
10535]
Length = 833
Score = 96.5 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 27/60 (45%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
++ L + Y+ LD P D YD++ L+AL+ PEL D P VG+
Sbjct: 8 AQRIDALRRRIEDANYRYHVLDEPQMADADYDKLMRELEALERAHPELASADSPTQRVGH 67
>gi|21242377|ref|NP_641959.1| NAD-dependent DNA ligase LigA [Xanthomonas axonopodis pv. citri
str. 306]
gi|81803317|sp|Q8PM07|DNLJ_XANAC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|21107814|gb|AAM36495.1| DNA ligase [Xanthomonas axonopodis pv. citri str. 306]
Length = 833
Score = 96.5 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 27/60 (45%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
++ L + Y+ LD P D YD++ L+AL+ PEL D P VG+
Sbjct: 8 AQRIDALRRRIEDANYRYHVLDEPQMADADYDKLMRELEALERAHPELASADSPTQRVGH 67
>gi|78047224|ref|YP_363399.1| NAD-dependent DNA ligase LigA [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|123744002|sp|Q3BV14|DNLJ_XANC5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|78035654|emb|CAJ23345.1| DNA ligase [Xanthomonas campestris pv. vesicatoria str. 85-10]
Length = 833
Score = 96.5 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 27/60 (45%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
++ L + Y+ LD P D YD++ L+AL+ PEL D P VG+
Sbjct: 8 AQRIDALRRRIEDANYRYHVLDEPQMADADYDKLMRELEALERAHPELASADSPTQRVGH 67
>gi|53719773|ref|YP_108759.1| DNA ligase [Burkholderia pseudomallei K96243]
gi|167816389|ref|ZP_02448069.1| DNA ligase [Burkholderia pseudomallei 91]
gi|81379503|sp|Q63T07|DNLJ_BURPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|52210187|emb|CAH36166.1| DNA ligase [Burkholderia pseudomallei K96243]
Length = 691
Score = 96.5 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 24/62 (38%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ +L YY LD P D YDR+ L ++ + P+L D P
Sbjct: 11 SQPAKRAAWLRAELERANYAYYVLDQPDLPDAEYDRLFVELQRIEAEHPDLVTPDSPTQR 70
Query: 117 VG 118
VG
Sbjct: 71 VG 72
>gi|319789848|ref|YP_004151481.1| DNA ligase, NAD-dependent [Thermovibrio ammonificans HB-1]
gi|317114350|gb|ADU96840.1| DNA ligase, NAD-dependent [Thermovibrio ammonificans HB-1]
Length = 723
Score = 96.5 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
Query: 36 PNKRALESWLDK---------AKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFT 86
+R L+ DK + LS EA E L ++ +H YY NP+ +
Sbjct: 5 EEERELQQLTDKLLKELEGKTEEDFKKLSTEEARELAEKLRRVIRYHDYKYYVQANPVIS 64
Query: 87 DGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
D YD++ L+AL++ PE+ D P +
Sbjct: 65 DYQYDKLFHALEALEKAHPEVVTPDSPTQRI 95
>gi|124302218|gb|ABN05294.1| DNA ligase [Geobacillus sp. g]
Length = 670
Score = 96.5 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 32/65 (49%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + +A L ++ + YY L P D YDR+ + L A++EQ+PEL D P
Sbjct: 1 MDRQQAERRAAELRELLHRYGYEYYVLGRPSVPDAEYDRLMQELMAIEEQYPELKTSDSP 60
Query: 114 WNTVG 118
+G
Sbjct: 61 TQRIG 65
>gi|288927843|ref|ZP_06421690.1| DNA ligase, NAD-dependent [Prevotella sp. oral taxon 317 str.
F0108]
gi|288330677|gb|EFC69261.1| DNA ligase, NAD-dependent [Prevotella sp. oral taxon 317 str.
F0108]
Length = 665
Score = 96.5 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 32/61 (52%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E + +E L + HH YY ++P +D +DR+ L L+ + PE++D + P V
Sbjct: 2 EEIKRIEELREQLHHHNYLYYVQNSPTLSDQEFDRLMRELQDLEAKHPEVYDPNSPTQRV 61
Query: 118 G 118
G
Sbjct: 62 G 62
>gi|218710253|ref|YP_002417874.1| NAD-dependent DNA ligase LigA [Vibrio splendidus LGP32]
gi|254782307|sp|B7VIK3|DNLJ_VIBSL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|218323272|emb|CAV19449.1| DNA ligase [Vibrio splendidus LGP32]
Length = 670
Score = 96.5 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 32/63 (50%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
K + +E L + +H YY D+P D YDR+ ++L ++++ PEL D P
Sbjct: 2 KESIQVTLEQLRETLHYHAVRYYVEDSPEIPDVEYDRLMQQLLKIEDENPELVTVDSPSQ 61
Query: 116 TVG 118
VG
Sbjct: 62 RVG 64
>gi|238897965|ref|YP_002923645.1| DNA ligase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
gi|257096312|sp|C4K4K4|DNLJ_HAMD5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|229465723|gb|ACQ67497.1| DNA ligase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
Length = 702
Score = 96.5 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 30/58 (51%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L + HH+ Y+ D P TD YD + E+L + Q+PEL + D P VG
Sbjct: 6 EKINQLRDVLKHHEYLYHVNDAPEITDAEYDALLEKLREWESQYPELMNPDSPTQKVG 63
>gi|296046585|gb|ADG86434.1| NAD-dependent DNA ligase [Francisella novicida]
Length = 670
Score = 96.5 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 26/60 (43%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E++ L H YY D P D YDR+ +RL L+ +P+ D P VG
Sbjct: 4 IQTEMDQLTHTINQHNIRYYVDDAPSIPDAEYDRLIKRLTELERDYPQFKSVDSPTQRVG 63
>gi|197336238|ref|YP_002156719.1| DNA ligase, NAD-dependent [Vibrio fischeri MJ11]
gi|254781450|sp|B5FGU7|DNLJ_VIBFM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|197317728|gb|ACH67175.1| DNA ligase, NAD-dependent [Vibrio fischeri MJ11]
Length = 668
Score = 96.5 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 29/56 (51%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L + +H YY D+P D YDR+ + L +++ + PEL D P VG
Sbjct: 7 LDELKQQLNYHAYRYYVEDSPELPDAEYDRMMQELLSIESEHPELVTVDSPSQRVG 62
>gi|76810783|ref|YP_333980.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1710b]
gi|167720173|ref|ZP_02403409.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei DM98]
gi|167911510|ref|ZP_02498601.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 112]
gi|254189298|ref|ZP_04895809.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei Pasteur 52237]
gi|254259109|ref|ZP_04950163.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1710a]
gi|254297202|ref|ZP_04964655.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 406e]
gi|123771899|sp|Q3JR23|DNLJ_BURP1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|76580236|gb|ABA49711.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1710b]
gi|157807762|gb|EDO84932.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 406e]
gi|157936977|gb|EDO92647.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei Pasteur 52237]
gi|254217798|gb|EET07182.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1710a]
Length = 691
Score = 96.5 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 24/62 (38%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ +L YY LD P D YDR+ L ++ + P+L D P
Sbjct: 11 SQPAKRAAWLRAELERANYAYYVLDQPDLPDAEYDRLFVELQRIEAEHPDLVTPDSPTQR 70
Query: 117 VG 118
VG
Sbjct: 71 VG 72
>gi|126453906|ref|YP_001066758.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1106a]
gi|134277579|ref|ZP_01764294.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 305]
gi|167739178|ref|ZP_02411952.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 14]
gi|167824768|ref|ZP_02456239.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 9]
gi|167846299|ref|ZP_02471807.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei B7210]
gi|167894881|ref|ZP_02482283.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 7894]
gi|167903270|ref|ZP_02490475.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei NCTC 13177]
gi|167919520|ref|ZP_02506611.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei BCC215]
gi|217421846|ref|ZP_03453350.1| DNA ligase (NAD(+)) [Burkholderia pseudomallei 576]
gi|226198948|ref|ZP_03794511.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei Pakistan 9]
gi|237812814|ref|YP_002897265.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei MSHR346]
gi|242317106|ref|ZP_04816122.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1106b]
gi|254179316|ref|ZP_04885915.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1655]
gi|254198094|ref|ZP_04904516.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei S13]
gi|166215566|sp|A3NWN7|DNLJ_BURP0 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|126227548|gb|ABN91088.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1106a]
gi|134251229|gb|EBA51308.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 305]
gi|169654835|gb|EDS87528.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei S13]
gi|184209856|gb|EDU06899.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1655]
gi|217395588|gb|EEC35606.1| DNA ligase (NAD(+)) [Burkholderia pseudomallei 576]
gi|225929048|gb|EEH25072.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei Pakistan 9]
gi|237506455|gb|ACQ98773.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei MSHR346]
gi|242140345|gb|EES26747.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1106b]
Length = 691
Score = 96.5 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 24/62 (38%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ +L YY LD P D YDR+ L ++ + P+L D P
Sbjct: 11 SQPAKRAAWLRAELERANYAYYVLDQPDLPDAEYDRLFVELQRIEAEHPDLVTPDSPTQR 70
Query: 117 VG 118
VG
Sbjct: 71 VG 72
>gi|325928155|ref|ZP_08189364.1| DNA ligase, NAD-dependent [Xanthomonas perforans 91-118]
gi|325541451|gb|EGD12984.1| DNA ligase, NAD-dependent [Xanthomonas perforans 91-118]
Length = 833
Score = 96.5 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 27/60 (45%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
++ L + Y+ LD P D YD++ L+AL+ PEL D P VG+
Sbjct: 8 AQRIDALRRRIEDANYRYHVLDEPQMADADYDKLMRELEALERAHPELASADSPTQRVGH 67
>gi|53723744|ref|YP_103200.1| DNA ligase, NAD-dependent [Burkholderia mallei ATCC 23344]
gi|67639492|ref|ZP_00438344.1| DNA ligase, NAD-dependent [Burkholderia mallei GB8 horse 4]
gi|121600643|ref|YP_993378.1| DNA ligase, NAD-dependent [Burkholderia mallei SAVP1]
gi|124385135|ref|YP_001029185.1| DNA ligase, NAD-dependent [Burkholderia mallei NCTC 10229]
gi|126450807|ref|YP_001080885.1| DNA ligase, NAD-dependent [Burkholderia mallei NCTC 10247]
gi|167004074|ref|ZP_02269848.1| DNA ligase, NAD-dependent [Burkholderia mallei PRL-20]
gi|254178005|ref|ZP_04884660.1| DNA ligase, NAD-dependent [Burkholderia mallei ATCC 10399]
gi|254206491|ref|ZP_04912843.1| DNA ligase, NAD-dependent [Burkholderia mallei JHU]
gi|254358100|ref|ZP_04974373.1| DNA ligase, NAD-dependent [Burkholderia mallei 2002721280]
gi|81604820|sp|Q62JB9|DNLJ_BURMA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|166215563|sp|A3MKU9|DNLJ_BURM7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|166215564|sp|A2SB66|DNLJ_BURM9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|166215565|sp|A1V575|DNLJ_BURMS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|52427167|gb|AAU47760.1| DNA ligase, NAD-dependent [Burkholderia mallei ATCC 23344]
gi|121229453|gb|ABM51971.1| DNA ligase, NAD-dependent [Burkholderia mallei SAVP1]
gi|124293155|gb|ABN02424.1| DNA ligase (NAD(+)) [Burkholderia mallei NCTC 10229]
gi|126243677|gb|ABO06770.1| DNA ligase (NAD(+)) [Burkholderia mallei NCTC 10247]
gi|147753934|gb|EDK60999.1| DNA ligase, NAD-dependent [Burkholderia mallei JHU]
gi|148027227|gb|EDK85248.1| DNA ligase, NAD-dependent [Burkholderia mallei 2002721280]
gi|160699044|gb|EDP89014.1| DNA ligase, NAD-dependent [Burkholderia mallei ATCC 10399]
gi|238520039|gb|EEP83503.1| DNA ligase, NAD-dependent [Burkholderia mallei GB8 horse 4]
gi|243060513|gb|EES42699.1| DNA ligase, NAD-dependent [Burkholderia mallei PRL-20]
Length = 691
Score = 96.5 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 24/62 (38%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ +L YY LD P D YDR+ L ++ + P+L D P
Sbjct: 11 SQPAKRAAWLRAELERANYAYYVLDQPDLPDAEYDRLFVELQRIEAEHPDLVTPDSPTQR 70
Query: 117 VG 118
VG
Sbjct: 71 VG 72
>gi|303252067|ref|ZP_07338236.1| truncated NAD-dependent DNA ligase LigA [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|302649049|gb|EFL79236.1| truncated NAD-dependent DNA ligase LigA [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
Length = 451
Score = 96.1 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++E L + ++ +Y+ LDNPL D YDR+ L L+ Q PE D P VG
Sbjct: 16 AQLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITADSPTQRVG 73
>gi|325141882|gb|EGC64324.1| DNA ligase, NAD-dependent [Neisseria meningitidis 961-5945]
Length = 841
Score = 96.1 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 37/83 (44%)
Query: 36 PNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSE 95
PN + ++ + K S K A + +L + + YY LD P D YD++
Sbjct: 3 PNSKHNTNFTNLLKPSDSDIKQFAAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFR 62
Query: 96 RLDALQEQFPELFDEDHPWNTVG 118
L+AL+ PEL D P VG
Sbjct: 63 ELEALERNHPELKLPDSPTQRVG 85
>gi|126441747|ref|YP_001059474.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 668]
gi|166215567|sp|A3NAV3|DNLJ_BURP6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|126221240|gb|ABN84746.1| DNA ligase (NAD(+)) [Burkholderia pseudomallei 668]
Length = 691
Score = 96.1 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 24/62 (38%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ +L YY LD P D YDR+ L ++ + P+L D P
Sbjct: 11 SQPAKRAAWLRAELERANYAYYVLDQPDLPDAEYDRLFVELQRIEAEHPDLVTPDSPTQR 70
Query: 117 VG 118
VG
Sbjct: 71 VG 72
>gi|187734527|ref|YP_001876639.1| DNA ligase, NAD-dependent [Akkermansia muciniphila ATCC BAA-835]
gi|254781249|sp|B2UL69|DNLJ_AKKM8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|187424579|gb|ACD03858.1| DNA ligase, NAD-dependent [Akkermansia muciniphila ATCC BAA-835]
Length = 794
Score = 96.1 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 35/82 (42%)
Query: 37 NKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSER 96
RA E+ + ++ A ++YL H + YY P +D YD +
Sbjct: 23 APRAGEARENAGTDHPGNAEDPAHRRIDYLRSELRRHNRLYYEQAEPEISDAEYDALFLE 82
Query: 97 LDALQEQFPELFDEDHPWNTVG 118
L+ L++ PEL D D P VG
Sbjct: 83 LEKLEKAHPELSDPDSPTRRVG 104
>gi|332306125|ref|YP_004433976.1| DNA ligase, NAD-dependent [Glaciecola agarilytica 4H-3-7+YE-5]
gi|332173454|gb|AEE22708.1| DNA ligase, NAD-dependent [Glaciecola agarilytica 4H-3-7+YE-5]
Length = 677
Score = 96.1 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 53 SLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDH 112
+LS + + L+ + YY DNP D YDR+ L +++ P+L D
Sbjct: 4 ALSPAQ---RLTQLINTINEYNYQYYVQDNPSVPDAEYDRLMRELLDIEKAHPDLRSPDS 60
Query: 113 PWNTVG 118
P VG
Sbjct: 61 PSQKVG 66
>gi|46143448|ref|ZP_00135242.2| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II)
[Actinobacillus pleuropneumoniae serovar 1 str. 4074]
gi|126208768|ref|YP_001053993.1| NAD-dependent DNA ligase LigA [Actinobacillus pleuropneumoniae L20]
gi|166215385|sp|A3N1V2|DNLJ_ACTP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|126097560|gb|ABN74388.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 5b str. L20]
Length = 683
Score = 96.1 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 51 VTSLSKGEAM---IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
++ + + +A ++E L + ++ Y+ LDNPL D YDR+ L L+ Q PE
Sbjct: 4 LSQMQEYQADTTFAQLEALRQKLREYEYHYHVLDNPLVPDAEYDRLMNELKNLEWQHPEW 63
Query: 108 FDEDHPWNTVG 118
D P VG
Sbjct: 64 ITVDSPTQRVG 74
>gi|254252054|ref|ZP_04945372.1| NAD-dependent DNA ligase [Burkholderia dolosa AUO158]
gi|124894663|gb|EAY68543.1| NAD-dependent DNA ligase [Burkholderia dolosa AUO158]
Length = 691
Score = 96.1 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 22/58 (37%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+L YY LD P D YDR+ L L+ PEL D P VG
Sbjct: 15 ARAAWLRDQLERANHAYYVLDQPDLPDAEYDRLFLELQQLEADHPELVTPDSPTQRVG 72
>gi|258508011|ref|YP_003170762.1| NAD-dependent DNA ligase [Lactobacillus rhamnosus GG]
gi|257147938|emb|CAR86911.1| NAD-dependent DNA ligase [Lactobacillus rhamnosus GG]
gi|259649339|dbj|BAI41501.1| DNA ligase [Lactobacillus rhamnosus GG]
Length = 674
Score = 96.1 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 31/71 (43%)
Query: 48 AKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
+K + EA E+ L K + YY D P TD +YD L AL+ FP+L
Sbjct: 3 SKPAAQFTLEEAEAEIAKLRKQLNQWRLEYYTKDAPTVTDNVYDDHYRDLQALEAAFPKL 62
Query: 108 FDEDHPWNTVG 118
D P VG
Sbjct: 63 VTPDSPTQQVG 73
>gi|325129804|gb|EGC52612.1| DNA ligase, NAD-dependent [Neisseria meningitidis OX99.30304]
Length = 841
Score = 96.1 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 36/83 (43%)
Query: 36 PNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSE 95
PN + + + K S K A + +L + + YY LD P D YD++
Sbjct: 3 PNSKHNTNLTNLLKPSDSDIKQFAAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFR 62
Query: 96 RLDALQEQFPELFDEDHPWNTVG 118
L+AL+ PEL D P VG
Sbjct: 63 ELEALERNHPELKLPDSPTQRVG 85
>gi|325135742|gb|EGC58354.1| DNA ligase, NAD-dependent [Neisseria meningitidis M0579]
Length = 841
Score = 96.1 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 36/83 (43%)
Query: 36 PNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSE 95
PN + + + K S K A + +L + + YY LD P D YD++
Sbjct: 3 PNSKHNTNLTNLLKPSDSDIKQFAAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFR 62
Query: 96 RLDALQEQFPELFDEDHPWNTVG 118
L+AL+ PEL D P VG
Sbjct: 63 ELEALERNHPELKLPDSPTQRVG 85
>gi|254670337|emb|CBA05747.1| DNA ligase [Neisseria meningitidis alpha153]
Length = 841
Score = 96.1 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 37/83 (44%)
Query: 36 PNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSE 95
PN + ++ + K S K A + +L + + YY LD P D YD++
Sbjct: 3 PNSKHNTNFTNLLKPSDSDIKQFAAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFR 62
Query: 96 RLDALQEQFPELFDEDHPWNTVG 118
L+AL+ PEL D P VG
Sbjct: 63 ELEALERNHPELKLPDSPTQRVG 85
>gi|59712497|ref|YP_205273.1| NAD-dependent DNA ligase LigA [Vibrio fischeri ES114]
gi|75353581|sp|Q5E3L1|DNLJ_VIBF1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|59480598|gb|AAW86385.1| DNA ligase, NAD(+)-dependent [Vibrio fischeri ES114]
Length = 668
Score = 96.1 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L + +H YY D+P D YDR+ ++L +++ + PEL D P VG
Sbjct: 7 LDELKQQLNYHAYRYYVEDSPELPDAEYDRMMQQLLSIESEHPELVTVDSPSQRVG 62
>gi|218767787|ref|YP_002342299.1| putative DNA ligase [Neisseria meningitidis Z2491]
gi|166216217|sp|A1IQR7|DNLJ_NEIMA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|121051795|emb|CAM08101.1| putative DNA ligase [Neisseria meningitidis Z2491]
gi|319410038|emb|CBY90372.1| DNA ligase (polydeoxyribonucleotide synthase [NAD+]) [Neisseria
meningitidis WUE 2594]
Length = 841
Score = 96.1 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 37/83 (44%)
Query: 36 PNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSE 95
PN + ++ + K S K A + +L + + YY LD P D YD++
Sbjct: 3 PNSKHNTNFTNLLKPSDSDIKQFAAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFR 62
Query: 96 RLDALQEQFPELFDEDHPWNTVG 118
L+AL+ PEL D P VG
Sbjct: 63 ELEALERNHPELKLPDSPTQRVG 85
>gi|147678862|ref|YP_001213077.1| NAD-dependent DNA ligase [Pelotomaculum thermopropionicum SI]
gi|190359268|sp|A5CZ68|DNLJ_PELTS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|146274959|dbj|BAF60708.1| NAD-dependent DNA ligase [Pelotomaculum thermopropionicum SI]
Length = 679
Score = 96.1 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 25/49 (51%)
Query: 70 ALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH YY LD P TD YDR+ L+ L++QFP L P VG
Sbjct: 19 IEHHNYLYYVLDRPAITDAQYDRLMRELERLEKQFPALVTPYSPTQRVG 67
>gi|312878358|ref|ZP_07738269.1| DNA ligase (NAD(+)) [Caldicellulosiruptor lactoaceticus 6A]
gi|311794859|gb|EFR11277.1| DNA ligase (NAD(+)) [Caldicellulosiruptor lactoaceticus 6A]
Length = 259
Score = 96.1 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 28/60 (46%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV + +H YY DNP +D YD + L L++Q+PE D P VG
Sbjct: 5 IKKRIRELVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYVFPDSPTQRVG 64
>gi|188533249|ref|YP_001907046.1| NAD-dependent DNA ligase LigA [Erwinia tasmaniensis Et1/99]
gi|254781330|sp|B2VE40|DNLJ_ERWT9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|188028291|emb|CAO96149.1| DNA ligase [Erwinia tasmaniensis Et1/99]
Length = 670
Score = 96.1 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ +L + H++ Y+ LD P D YDR+ L L+ PEL D P VG
Sbjct: 7 KITHLRTLLRHYEYQYHVLDAPAVPDAEYDRLMGELRELEAAHPELLTTDSPTQRVG 63
>gi|229551868|ref|ZP_04440593.1| DNA ligase (NAD(+)) [Lactobacillus rhamnosus LMS2-1]
gi|258539286|ref|YP_003173785.1| NAD-dependent DNA ligase [Lactobacillus rhamnosus Lc 705]
gi|229314812|gb|EEN80785.1| DNA ligase (NAD(+)) [Lactobacillus rhamnosus LMS2-1]
gi|257150962|emb|CAR89934.1| NAD-dependent DNA ligase [Lactobacillus rhamnosus Lc 705]
Length = 674
Score = 96.1 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 31/71 (43%)
Query: 48 AKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
+K + EA E+ L K + YY D P TD +YD L AL+ FP+L
Sbjct: 3 SKPAAQFTLEEAEAEIAKLRKQLNQWRLEYYTKDAPTVTDNVYDDHYRDLQALEAAFPKL 62
Query: 108 FDEDHPWNTVG 118
D P VG
Sbjct: 63 VTPDSPTQQVG 73
>gi|300021787|ref|YP_003754398.1| DNA ligase, NAD-dependent [Hyphomicrobium denitrificans ATCC 51888]
gi|299523608|gb|ADJ22077.1| DNA ligase, NAD-dependent [Hyphomicrobium denitrificans ATCC 51888]
Length = 712
Score = 96.1 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 26/60 (43%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E+ L H + YYR D P +D YD + RL L++ PEL P VG
Sbjct: 23 VEDEIARLSAEIERHDELYYRNDAPEISDADYDALRRRLTQLEDAHPELKRAGSPSEKVG 82
>gi|160902460|ref|YP_001568041.1| DNA ligase, NAD-dependent [Petrotoga mobilis SJ95]
gi|190359269|sp|A9BJX5|DNLJ_PETMO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|160360104|gb|ABX31718.1| DNA ligase, NAD-dependent [Petrotoga mobilis SJ95]
Length = 668
Score = 96.1 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E L H YY L +P+ +D YD++ + L L++++PEL D P +G
Sbjct: 7 IKERYEKLKAEIEEHNYRYYVLADPIISDQEYDKLFKELVELEKKYPELKTPDSPTQRIG 66
>gi|188585101|ref|YP_001916646.1| DNA ligase, NAD-dependent [Natranaerobius thermophilus JW/NM-WN-LF]
gi|254781378|sp|B2A5W5|DNLJ_NATTJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|179349788|gb|ACB84058.1| DNA ligase, NAD-dependent [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 663
Score = 96.1 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ +VE L + +H YY LD P +D +D + L L++ +PE D P
Sbjct: 3 KDIQKKVEALREKIEYHNHRYYVLDAPEISDQEFDALMNELIELEQTYPEYQSPDSPSQR 62
Query: 117 VG 118
VG
Sbjct: 63 VG 64
>gi|171322051|ref|ZP_02910925.1| DNA ligase, NAD-dependent [Burkholderia ambifaria MEX-5]
gi|171092642|gb|EDT37943.1| DNA ligase, NAD-dependent [Burkholderia ambifaria MEX-5]
Length = 691
Score = 96.1 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 23/62 (37%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ +L YY LD P D YDR+ L L+ PEL D P
Sbjct: 11 SQPEARAAWLRDQLERANYAYYVLDQPDLPDAEYDRLFGELQQLETDHPELVTPDSPTQR 70
Query: 117 VG 118
VG
Sbjct: 71 VG 72
>gi|307546309|ref|YP_003898788.1| DNA ligase, NAD-dependent [Halomonas elongata DSM 2581]
gi|307218333|emb|CBV43603.1| DNA ligase, NAD-dependent [Halomonas elongata DSM 2581]
Length = 700
Score = 96.1 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Query: 49 KKVTSLSKGE--AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
+ +++ + E L YY LD P TD YDR RL ++ ++PE
Sbjct: 14 RDTDDMTQPDPTIQDEAARLRAELDDANHRYYVLDEPRMTDADYDRKLRRLQEIETEYPE 73
Query: 107 LFDEDHPWNTVG 118
L D P VG
Sbjct: 74 LVRPDSPTQRVG 85
>gi|229917963|ref|YP_002886609.1| DNA ligase, NAD-dependent [Exiguobacterium sp. AT1b]
gi|229469392|gb|ACQ71164.1| DNA ligase, NAD-dependent [Exiguobacterium sp. AT1b]
Length = 664
Score = 96.1 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 27/61 (44%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E VE L + + YY LD P D YDR+ L ++ +PEL D P V
Sbjct: 2 EMAERVEELRQTLNQYGYEYYVLDRPSVPDSEYDRLMNELIQIETDYPELRTPDSPTQRV 61
Query: 118 G 118
G
Sbjct: 62 G 62
>gi|329120426|ref|ZP_08249092.1| NAD-dependent DNA ligase LigA [Neisseria bacilliformis ATCC
BAA-1200]
gi|327462110|gb|EGF08438.1| NAD-dependent DNA ligase LigA [Neisseria bacilliformis ATCC
BAA-1200]
Length = 887
Score = 96.1 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 36/99 (36%)
Query: 20 TPAQWKKLLTLEAKFLPNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYR 79
TP + K P + + D + ++ L + + YY
Sbjct: 28 TPGRLKTRYRPSENRFPRFQTASNISDSLTFQIDTRMNDPAAKIRELTDLLNRYGYEYYT 87
Query: 80 LDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LD P D YDR+ L+AL+ PEL D P VG
Sbjct: 88 LDAPSVPDAEYDRLFRELEALEAAHPELKLPDSPTQRVG 126
>gi|258542980|ref|YP_003188413.1| DNA ligase [Acetobacter pasteurianus IFO 3283-01]
gi|256634058|dbj|BAI00034.1| DNA ligase [Acetobacter pasteurianus IFO 3283-01]
gi|256637118|dbj|BAI03087.1| DNA ligase [Acetobacter pasteurianus IFO 3283-03]
gi|256640170|dbj|BAI06132.1| DNA ligase [Acetobacter pasteurianus IFO 3283-07]
gi|256643227|dbj|BAI09182.1| DNA ligase [Acetobacter pasteurianus IFO 3283-22]
gi|256646282|dbj|BAI12230.1| DNA ligase [Acetobacter pasteurianus IFO 3283-26]
gi|256649335|dbj|BAI15276.1| DNA ligase [Acetobacter pasteurianus IFO 3283-32]
gi|256652321|dbj|BAI18255.1| DNA ligase [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256655379|dbj|BAI21306.1| DNA ligase [Acetobacter pasteurianus IFO 3283-12]
Length = 685
Score = 96.1 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 32/65 (49%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+++ +A E+E L HH YYR D P +D YD + R DA+ Q PE E+
Sbjct: 1 MTQQQAREELERLAAEIAHHNAAYYRNDAPEISDAEYDALRRRYDAIVAQHPEAEPENSA 60
Query: 114 WNTVG 118
VG
Sbjct: 61 AQAVG 65
>gi|237757130|ref|ZP_04585563.1| DNA ligase, NAD-dependent [Sulfurihydrogenibium yellowstonense
SS-5]
gi|237690707|gb|EEP59882.1| DNA ligase, NAD-dependent [Sulfurihydrogenibium yellowstonense
SS-5]
Length = 490
Score = 96.1 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 34/68 (50%)
Query: 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
L+K EA VE L ++ H YY L P+ +D YD++ + L ++ ++PEL
Sbjct: 21 DAKKLTKEEAKKIVEDLREVIRFHDWRYYILAQPVISDYEYDKLFKLLKDIENKYPELIT 80
Query: 110 EDHPWNTV 117
D P +
Sbjct: 81 PDSPTQRI 88
>gi|295836378|ref|ZP_06823311.1| DNA ligase, NAD-dependent [Streptomyces sp. SPB74]
gi|295825992|gb|EDY45591.2| DNA ligase, NAD-dependent [Streptomyces sp. SPB74]
Length = 818
Score = 96.1 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
E E + + H+ YY D P+ +D +D + RL AL+E+ P+L D P
Sbjct: 49 PAEVREEHSRVAREVDEHRYRYYVNDQPVVSDADFDALLRRLTALEEEHPQLRTPDSPTQ 108
Query: 116 TV 117
V
Sbjct: 109 KV 110
>gi|294626370|ref|ZP_06704972.1| DNA ligase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
11122]
gi|292599371|gb|EFF43506.1| DNA ligase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
11122]
Length = 833
Score = 95.7 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
++ L + Y+ LD P D YD++ L+AL+ PEL D P VG+
Sbjct: 10 RIDALRRRIEDANYRYHVLDEPQMADADYDKLMRELEALERAHPELASADSPTQRVGH 67
>gi|302537077|ref|ZP_07289419.1| DNA ligase, NAD-dependent [Streptomyces sp. C]
gi|302445972|gb|EFL17788.1| DNA ligase, NAD-dependent [Streptomyces sp. C]
Length = 736
Score = 95.7 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
A + + L + H+ YY D P+ +D +D++ L+AL+EQ+PEL D P V
Sbjct: 14 AREQHQLLAEQVEEHRFRYYVNDQPVVSDAEFDQLLRSLEALEEQYPELRTPDSPTQKV 72
>gi|237745525|ref|ZP_04576005.1| DNA ligase [Oxalobacter formigenes HOxBLS]
gi|229376876|gb|EEO26967.1| DNA ligase [Oxalobacter formigenes HOxBLS]
Length = 685
Score = 95.7 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 23/59 (38%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L + YY LD P+ D YDRV L L+ +PEL P VG
Sbjct: 16 ESRAAKLRSEIERYNYAYYVLDAPVVPDAEYDRVFRELQELEAAYPELVVPGSPTQRVG 74
>gi|270159993|ref|ZP_06188649.1| DNA ligase [Legionella longbeachae D-4968]
gi|269988332|gb|EEZ94587.1| DNA ligase [Legionella longbeachae D-4968]
Length = 671
Score = 95.7 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 26/65 (40%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ E + L + YY LD PL D YDR L L+ Q PEL D P
Sbjct: 1 MIIDEIKEQAARLKDKIRQYDYHYYVLDEPLVPDVEYDRCFRALQNLEAQHPELLTADSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|199597353|ref|ZP_03210784.1| NAD-dependent DNA ligase [Lactobacillus rhamnosus HN001]
gi|199591869|gb|EDY99944.1| NAD-dependent DNA ligase [Lactobacillus rhamnosus HN001]
Length = 674
Score = 95.7 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 31/71 (43%)
Query: 48 AKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
+K + EA EV L K + YY D P TD +YD L AL+ FP+L
Sbjct: 3 SKPAAQFTLEEAEAEVAKLRKQLNQWRLEYYTKDAPTVTDNVYDDHYRDLQALEAAFPKL 62
Query: 108 FDEDHPWNTVG 118
D P VG
Sbjct: 63 VTPDSPTQQVG 73
>gi|145634259|ref|ZP_01789970.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae PittAA]
gi|145268703|gb|EDK08696.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae PittAA]
Length = 670
Score = 95.7 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L K ++ Y+ LDNP D YDR+ +L AL+ + PE D P VG
Sbjct: 4 IQTQLDNLRKTLRQYEFEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPTQRVG 63
>gi|254360665|ref|ZP_04976814.1| DNA ligase (NAD(+)) [Mannheimia haemolytica PHL213]
gi|153091205|gb|EDN73210.1| DNA ligase (NAD(+)) [Mannheimia haemolytica PHL213]
Length = 685
Score = 95.7 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 31/61 (50%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E + ++E + + ++ Y+ LDNP D YDR+ L L+ Q PEL D P V
Sbjct: 17 ELVEKIETIRQTLRQYEYEYHVLDNPSVPDAEYDRLMNELKNLEWQHPELISADSPTQRV 76
Query: 118 G 118
G
Sbjct: 77 G 77
>gi|289165264|ref|YP_003455402.1| DNA ligase [Legionella longbeachae NSW150]
gi|288858437|emb|CBJ12315.1| DNA ligase [Legionella longbeachae NSW150]
Length = 671
Score = 95.7 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 26/65 (40%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ E + L + YY LD PL D YDR L L+ Q PEL D P
Sbjct: 1 MIIDEIKEQAARLKDKIRQYDYHYYVLDEPLVPDVEYDRCFRALQNLEAQHPELLTADSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|229843861|ref|ZP_04464002.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 6P18H1]
gi|229812855|gb|EEP48543.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 6P18H1]
Length = 670
Score = 95.7 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 29/60 (48%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L K ++ Y+ LDNP D YDR+ +L AL+ + PE D P VG
Sbjct: 4 IQTKINNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPTQRVG 63
>gi|170692136|ref|ZP_02883299.1| DNA ligase, NAD-dependent [Burkholderia graminis C4D1M]
gi|170142566|gb|EDT10731.1| DNA ligase, NAD-dependent [Burkholderia graminis C4D1M]
Length = 693
Score = 95.7 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E+L YY LD P D YD++ + L++++ + P+L D P VG
Sbjct: 20 AARAEWLRAELERANYAYYVLDQPDLPDAEYDKLFKELESIEAEHPDLIVPDSPTQRVG 78
>gi|315445158|ref|YP_004078037.1| DNA ligase, NAD-dependent [Mycobacterium sp. Spyr1]
gi|315263461|gb|ADU00203.1| DNA ligase, NAD-dependent [Mycobacterium sp. Spyr1]
Length = 701
Score = 95.7 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 30/56 (53%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L HQ YY D P+ TD +D++ RL AL++++PEL D P VG
Sbjct: 18 WQELADEVREHQFRYYIRDAPIITDAEFDQLLRRLQALEDEYPELRTPDSPTQLVG 73
>gi|294497111|ref|YP_003560811.1| DNA ligase, NAD-dependent [Bacillus megaterium QM B1551]
gi|294347048|gb|ADE67377.1| DNA ligase, NAD-dependent [Bacillus megaterium QM B1551]
Length = 668
Score = 95.7 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 29/65 (44%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ A V+ L + + YY LD P D YD++ L ++E FPEL D P
Sbjct: 1 MEFETAKSRVQELRDLLNQYGYEYYVLDQPSVPDAEYDKLMNELIEIEESFPELKTADSP 60
Query: 114 WNTVG 118
+G
Sbjct: 61 TQRIG 65
>gi|217970592|ref|YP_002355826.1| DNA ligase, NAD-dependent [Thauera sp. MZ1T]
gi|217507919|gb|ACK54930.1| DNA ligase, NAD-dependent [Thauera sp. MZ1T]
Length = 693
Score = 95.7 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 22/46 (47%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY LD P D YDR+ L A++ +P L D P VG
Sbjct: 30 HDHAYYVLDAPTIPDAEYDRLFRELQAIERAYPALRSADSPTQRVG 75
>gi|145224827|ref|YP_001135505.1| NAD-dependent DNA ligase LigA [Mycobacterium gilvum PYR-GCK]
gi|190359265|sp|A4TDZ8|DNLJ_MYCGI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|145217313|gb|ABP46717.1| DNA ligase, NAD-dependent [Mycobacterium gilvum PYR-GCK]
Length = 712
Score = 95.7 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 8/78 (10%)
Query: 49 KKVTSLSKGEA--------MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDAL 100
S+ +A + L HQ YY D P+ TD +D++ RL AL
Sbjct: 7 PDPESMLAEQAHDALDPDLRRSWQELADEVREHQFRYYIRDAPIITDAEFDQLLRRLQAL 66
Query: 101 QEQFPELFDEDHPWNTVG 118
++++PEL D P VG
Sbjct: 67 EDEYPELRTPDSPTQLVG 84
>gi|254804544|ref|YP_003082765.1| DNA ligase [Neisseria meningitidis alpha14]
gi|254668086|emb|CBA04596.1| DNA ligase [Neisseria meningitidis alpha14]
Length = 841
Score = 95.7 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 37/83 (44%)
Query: 36 PNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSE 95
PN + ++ + K S K A + +L + + YY LD P D YD++
Sbjct: 3 PNSKHNTNFTNLLKPSDSDIKQFAAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFR 62
Query: 96 RLDALQEQFPELFDEDHPWNTVG 118
L+AL+ PEL D P VG
Sbjct: 63 ELEALERNHPELKLPDSPTQRVG 85
>gi|167586849|ref|ZP_02379237.1| DNA ligase, NAD-dependent [Burkholderia ubonensis Bu]
Length = 691
Score = 95.7 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 22/58 (37%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+L YY LD P D YDR+ L ++ PEL D P VG
Sbjct: 15 ARAAWLRDQLERANHAYYVLDQPDLPDAEYDRLFLELQQIEADHPELVTPDSPTQRVG 72
>gi|311898479|dbj|BAJ30887.1| putative DNA ligase [Kitasatospora setae KM-6054]
Length = 788
Score = 95.7 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 25/63 (39%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
E L H+ YY D P+ TD +D + L+AL+ P L D P
Sbjct: 8 PAEVRTRHAELATEIEEHRSRYYEQDAPVVTDAEFDALMRELEALEAAHPALATPDSPTR 67
Query: 116 TVG 118
VG
Sbjct: 68 KVG 70
>gi|255281707|ref|ZP_05346262.1| DNA ligase, NAD-dependent [Bryantella formatexigens DSM 14469]
gi|255267774|gb|EET60979.1| DNA ligase, NAD-dependent [Bryantella formatexigens DSM 14469]
Length = 674
Score = 95.7 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 32/64 (50%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
+ ++E L K +H YY DNP +D YD++ L +L+++ PEL + P
Sbjct: 4 TVETIQQKIEELRKTLEYHSDRYYNQDNPEISDYEYDQMMLELKSLEKEHPELITPESPT 63
Query: 115 NTVG 118
VG
Sbjct: 64 QHVG 67
>gi|156973609|ref|YP_001444516.1| NAD-dependent DNA ligase LigA [Vibrio harveyi ATCC BAA-1116]
gi|166216277|sp|A7MT54|DNLJ_VIBHB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|156525203|gb|ABU70289.1| hypothetical protein VIBHAR_01312 [Vibrio harveyi ATCC BAA-1116]
Length = 670
Score = 95.7 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 28/62 (45%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ +E L + +H YY DNP D YDR+ L ++ + PEL D P
Sbjct: 3 ESVLQRLEELKESLHYHAVRYYVEDNPEIPDAEYDRMMRELLDIEAEHPELVTVDSPSLR 62
Query: 117 VG 118
VG
Sbjct: 63 VG 64
>gi|307718507|ref|YP_003874039.1| DNA ligase [Spirochaeta thermophila DSM 6192]
gi|306532232|gb|ADN01766.1| DNA ligase [Spirochaeta thermophila DSM 6192]
Length = 673
Score = 95.7 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 34/65 (52%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+++ EA E++ LV++ YY L P TD YD + +RL L+ QFP L D P
Sbjct: 1 MTEQEAKKEIDRLVELLQRADYEYYVLGRPHLTDQEYDSLFDRLKTLEAQFPHLKRADSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|77747612|ref|NP_299833.2| NAD-dependent DNA ligase LigA [Xylella fastidiosa 9a5c]
gi|166216281|sp|Q9PAG2|DNLJ_XYLFA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
Length = 831
Score = 95.7 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
L + E+ ++ A +H Y+ LD P D YDR+ LDAL+ +P+L D P
Sbjct: 4 LDPAQRAAELRCRLQEANYH---YHVLDQPRIPDADYDRMLRELDALEAAYPDLATPDSP 60
Query: 114 WNTVGY 119
VG+
Sbjct: 61 TQRVGH 66
>gi|9107768|gb|AAF85353.1|AE004063_2 DNA ligase [Xylella fastidiosa 9a5c]
Length = 837
Score = 95.7 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
L + E+ ++ A +H Y+ LD P D YDR+ LDAL+ +P+L D P
Sbjct: 10 LDPAQRAAELRCRLQEANYH---YHVLDQPRIPDADYDRMLRELDALEAAYPDLATPDSP 66
Query: 114 WNTVGY 119
VG+
Sbjct: 67 TQRVGH 72
>gi|261493319|ref|ZP_05989845.1| NAD-dependent DNA ligase LigA [Mannheimia haemolytica serotype A2
str. BOVINE]
gi|261310963|gb|EEY12140.1| NAD-dependent DNA ligase LigA [Mannheimia haemolytica serotype A2
str. BOVINE]
Length = 685
Score = 95.7 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 31/61 (50%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E + ++E + + ++ Y+ LDNP D YDR+ L L+ Q PEL D P V
Sbjct: 17 ELVEKIETIRQTLRQYEYEYHVLDNPSVPDAEYDRLMNELKNLEWQHPELISADSPTQRV 76
Query: 118 G 118
G
Sbjct: 77 G 77
>gi|261496584|ref|ZP_05992964.1| NAD-dependent DNA ligase LigA [Mannheimia haemolytica serotype A2
str. OVINE]
gi|261307787|gb|EEY09110.1| NAD-dependent DNA ligase LigA [Mannheimia haemolytica serotype A2
str. OVINE]
Length = 685
Score = 95.7 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 31/61 (50%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E + ++E + + ++ Y+ LDNP D YDR+ L L+ Q PEL D P V
Sbjct: 17 ELVEKIETIRQTLRQYEYEYHVLDNPSVPDAEYDRLMNELKNLEWQHPELISADSPTQRV 76
Query: 118 G 118
G
Sbjct: 77 G 77
>gi|289804479|ref|ZP_06535108.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Typhi str. AG3]
Length = 119
Score = 95.7 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 27/60 (45%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L HH+ Y+ +D P D YDR+ L L+ Q P+L D P VG
Sbjct: 4 IEQQLTELRTTLRHHEYLYHVMDAPEILDAEYDRLMRELRELEAQRPDLITPDSPTQRVG 63
>gi|254427631|ref|ZP_05041338.1| DNA ligase, NAD-dependent [Alcanivorax sp. DG881]
gi|196193800|gb|EDX88759.1| DNA ligase, NAD-dependent [Alcanivorax sp. DG881]
Length = 776
Score = 95.7 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 28/65 (43%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + + + ++L YY D+P D YDR L L+ Q+P+L D P
Sbjct: 1 MPNPDIIQKAQHLRDQLNDWSYRYYVQDDPAVPDAEYDRAFRELKDLEAQYPDLITADSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|114563631|ref|YP_751144.1| DNA ligase, NAD-dependent [Shewanella frigidimarina NCIMB 400]
gi|122299383|sp|Q080K9|DNLJ_SHEFN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|114334924|gb|ABI72306.1| DNA ligase, NAD-dependent [Shewanella frigidimarina NCIMB 400]
Length = 670
Score = 95.7 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 26/60 (43%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E++ L H YY D P D YDR+ +RL L+ +P+ D P VG
Sbjct: 4 IQTEMDQLTHTINQHNIRYYVDDAPSIPDAEYDRLIKRLTELEGDYPQFKSVDSPTQRVG 63
>gi|126659779|ref|ZP_01730906.1| NAD-dependent DNA ligase LigA [Cyanothece sp. CCY0110]
gi|126618931|gb|EAZ89673.1| NAD-dependent DNA ligase LigA [Cyanothece sp. CCY0110]
Length = 677
Score = 95.7 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
KV +L + V L + YY LD+P+ D +YD++ LD L+++ P+L
Sbjct: 2 KVENLGVEQ---RVTQLRQQLQKANYAYYVLDDPIMEDAVYDQLYRELDNLEKEHPQLIT 58
Query: 110 EDHPWNTVG 118
D P VG
Sbjct: 59 PDSPTQRVG 67
>gi|323526494|ref|YP_004228647.1| NAD-dependent DNA ligase [Burkholderia sp. CCGE1001]
gi|323383496|gb|ADX55587.1| DNA ligase, NAD-dependent [Burkholderia sp. CCGE1001]
Length = 688
Score = 95.7 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 26/59 (44%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+L YY LD P D YD++ + L++++ Q P+L D P VG
Sbjct: 15 AERAAWLRAELERANYAYYVLDQPDLPDAEYDKLFKELESIEAQHPDLIVPDSPTQRVG 73
>gi|317125504|ref|YP_004099616.1| DNA ligase, NAD-dependent [Intrasporangium calvum DSM 43043]
gi|315589592|gb|ADU48889.1| DNA ligase, NAD-dependent [Intrasporangium calvum DSM 43043]
Length = 715
Score = 95.3 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 32/71 (45%)
Query: 48 AKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
++ + E E L + A Q Y+ D P +D YD + RL+AL+ Q+P L
Sbjct: 7 SQAIEDAIPDEVHHEWADLAERASAAQFAYHVKDAPTISDAEYDGLIRRLNALEAQWPSL 66
Query: 108 FDEDHPWNTVG 118
D P VG
Sbjct: 67 RTPDSPTQKVG 77
>gi|254292786|ref|YP_003058809.1| DNA ligase, NAD-dependent [Hirschia baltica ATCC 49814]
gi|254041317|gb|ACT58112.1| DNA ligase, NAD-dependent [Hirschia baltica ATCC 49814]
Length = 792
Score = 95.3 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 35/77 (45%)
Query: 42 ESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQ 101
S L SL+ +A E L + YY D P +D YD + + L AL+
Sbjct: 4 MSNLSSDSSPASLTLDQARERWEELAETIRQADSAYYEHDAPHLSDADYDALRQDLLALE 63
Query: 102 EQFPELFDEDHPWNTVG 118
+FP+L +D P +VG
Sbjct: 64 SEFPQLVAQDSPSQSVG 80
>gi|254673676|emb|CBA09270.1| DNA ligase [Neisseria meningitidis alpha275]
Length = 423
Score = 95.3 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 37/83 (44%)
Query: 36 PNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSE 95
PN + ++ + K S K A + +L + + YY LD P D YD++
Sbjct: 3 PNSKHNTNFTNLLKPSDSDIKQFAAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFR 62
Query: 96 RLDALQEQFPELFDEDHPWNTVG 118
L+AL+ PEL D P VG
Sbjct: 63 ELEALERNHPELKLPDSPTQRVG 85
>gi|110597868|ref|ZP_01386151.1| DNA ligase, NAD-dependent [Chlorobium ferrooxidans DSM 13031]
gi|110340593|gb|EAT59076.1| DNA ligase, NAD-dependent [Chlorobium ferrooxidans DSM 13031]
Length = 674
Score = 95.3 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 32/60 (53%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
A E+ L + H + YY+ P +D +D + E+L AL++QFP+L D P VG
Sbjct: 7 ASEEILRLRREIERHNRLYYQEAKPEISDYDFDLLLEQLVALEQQFPDLVTPDSPSQRVG 66
>gi|119717662|ref|YP_924627.1| DNA ligase, NAD-dependent [Nocardioides sp. JS614]
gi|166216220|sp|A1SMA5|DNLJ_NOCSJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|119538323|gb|ABL82940.1| DNA ligase, NAD-dependent [Nocardioides sp. JS614]
Length = 752
Score = 95.3 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 31/59 (52%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E + + + YY LD+P D +DR RL+AL+E+FPEL D P TVG
Sbjct: 64 REEHRLIAEEIEEARWRYYVLDSPTIDDADFDRRMRRLEALEEEFPELRTPDSPTQTVG 122
>gi|254776288|ref|ZP_05217804.1| NAD-dependent DNA ligase LigA [Mycobacterium avium subsp. avium
ATCC 25291]
Length = 681
Score = 95.3 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ + L + HQ YY D P+ +D +D + L AL+E+ PEL D P VG
Sbjct: 2 RRQWQELAETVREHQFRYYIKDAPIISDAEFDALFNELLALEERHPELRVADSPTQLVG 60
>gi|88861394|ref|ZP_01136024.1| NAD-dependent DNA ligase [Pseudoalteromonas tunicata D2]
gi|88816660|gb|EAR26485.1| NAD-dependent DNA ligase [Pseudoalteromonas tunicata D2]
Length = 673
Score = 95.3 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 28/62 (45%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ ++ L + YY LDNP D YDRV L AL+ Q+P+ D P
Sbjct: 3 ESVLSQIAALKVQLEEYNYQYYVLDNPSVPDSEYDRVMRELIALETQYPQFLSADSPSQK 62
Query: 117 VG 118
VG
Sbjct: 63 VG 64
>gi|169350953|ref|ZP_02867891.1| hypothetical protein CLOSPI_01730 [Clostridium spiroforme DSM 1552]
gi|169292015|gb|EDS74148.1| hypothetical protein CLOSPI_01730 [Clostridium spiroforme DSM 1552]
Length = 682
Score = 95.3 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 29/57 (50%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L + ++H YY D+P +D YD + + L AL+++ PE ED P VG
Sbjct: 24 RYNELKQKIMYHNDRYYNQDDPEISDYEYDMMMQELKALEKKHPEYITEDSPTQKVG 80
>gi|239618216|ref|YP_002941538.1| DNA ligase, NAD-dependent [Kosmotoga olearia TBF 19.5.1]
gi|239507047|gb|ACR80534.1| DNA ligase, NAD-dependent [Kosmotoga olearia TBF 19.5.1]
Length = 672
Score = 95.3 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 34/61 (55%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+ + + L + +H YY L++P+ TD YDR+ + L L++++PEL D P +
Sbjct: 6 DVIERAKKLREELNYHAYRYYVLNDPIITDEEYDRMLKELQELEKKYPELITPDSPTQRI 65
Query: 118 G 118
G
Sbjct: 66 G 66
>gi|269968476|ref|ZP_06182487.1| DNA ligase [Vibrio alginolyticus 40B]
gi|269826910|gb|EEZ81233.1| DNA ligase [Vibrio alginolyticus 40B]
Length = 690
Score = 95.3 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 28/62 (45%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ +E L + +H YY DNP D YDR+ L ++ + P+L D P
Sbjct: 23 ESVLQRLEELKESLHYHAVRYYVEDNPEIPDAEYDRLMRELLDIEAENPDLITVDSPSQR 82
Query: 117 VG 118
VG
Sbjct: 83 VG 84
>gi|125973550|ref|YP_001037460.1| DNA ligase, NAD-dependent [Clostridium thermocellum ATCC 27405]
gi|256003369|ref|ZP_05428360.1| DNA ligase, NAD-dependent [Clostridium thermocellum DSM 2360]
gi|281417755|ref|ZP_06248775.1| DNA ligase, NAD-dependent [Clostridium thermocellum JW20]
gi|166215580|sp|A3DE88|DNLJ_CLOTH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|125713775|gb|ABN52267.1| DNA ligase, NAD-dependent [Clostridium thermocellum ATCC 27405]
gi|255992659|gb|EEU02750.1| DNA ligase, NAD-dependent [Clostridium thermocellum DSM 2360]
gi|281409157|gb|EFB39415.1| DNA ligase, NAD-dependent [Clostridium thermocellum JW20]
gi|316940208|gb|ADU74242.1| DNA ligase, NAD-dependent [Clostridium thermocellum DSM 1313]
Length = 663
Score = 95.3 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 29/61 (47%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+ + L +I +H YY D P +D YD + L+ L+++ P+L D P +
Sbjct: 2 DIEKRILELREILNYHSHKYYVEDAPEISDFEYDELYRELEKLEQERPDLITPDSPTQRI 61
Query: 118 G 118
G
Sbjct: 62 G 62
>gi|91225892|ref|ZP_01260861.1| DNA ligase [Vibrio alginolyticus 12G01]
gi|91189542|gb|EAS75818.1| DNA ligase [Vibrio alginolyticus 12G01]
Length = 670
Score = 95.3 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 28/62 (45%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ +E L + +H YY DNP D YDR+ L ++ + P+L D P
Sbjct: 3 ESVLQRLEELKESLHYHAVRYYVEDNPEIPDAEYDRLMRELLDIEAENPDLITVDSPSQR 62
Query: 117 VG 118
VG
Sbjct: 63 VG 64
>gi|134296034|ref|YP_001119769.1| DNA ligase [Burkholderia vietnamiensis G4]
gi|166215568|sp|A4JF81|DNLJ_BURVG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|134139191|gb|ABO54934.1| DNA ligase, NAD-dependent [Burkholderia vietnamiensis G4]
Length = 691
Score = 95.3 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 22/58 (37%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+L YY LD P D YDR+ L L+ PEL D P VG
Sbjct: 15 ARAAWLRDQLERANYAYYVLDQPDLPDAEYDRLFGELQQLEADHPELVTPDSPTQRVG 72
>gi|1816524|gb|AAB42062.1| DNA ligase [Escherichia coli]
Length = 90
Score = 95.3 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ L HH+ Y+ +D P D YDR+ L L+ + PEL D P
Sbjct: 2 ESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|160934306|ref|ZP_02081693.1| hypothetical protein CLOLEP_03177 [Clostridium leptum DSM 753]
gi|156866979|gb|EDO60351.1| hypothetical protein CLOLEP_03177 [Clostridium leptum DSM 753]
Length = 661
Score = 95.3 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ A E L K +H K YY DNP TD YD + L+ ++ +PEL ED P
Sbjct: 1 MDLENARKSAEELRKKLNYHAKKYYEEDNPEITDYEYDMMLRELEGIELAYPELVTEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|237733138|ref|ZP_04563619.1| conserved hypothetical protein [Mollicutes bacterium D7]
gi|229383820|gb|EEO33911.1| conserved hypothetical protein [Coprobacillus sp. D7]
Length = 664
Score = 95.3 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 27/58 (46%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L L+H YY DNP TD YD + + L L+++ PE D P VG
Sbjct: 5 SRYKELKATILYHNDRYYNQDNPEITDYEYDMMMQELKGLEQKHPEYITSDSPTQKVG 62
>gi|229542656|ref|ZP_04431716.1| DNA ligase, NAD-dependent [Bacillus coagulans 36D1]
gi|229327076|gb|EEN92751.1| DNA ligase, NAD-dependent [Bacillus coagulans 36D1]
Length = 668
Score = 95.3 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 24/54 (44%)
Query: 65 YLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L K+ + YY LD P D YDR+ L ++ PEL D P VG
Sbjct: 12 ELRKLLNQYSYEYYVLDRPSVPDAEYDRLLRELQEIENAHPELITPDSPTQRVG 65
>gi|301633469|gb|ADK87023.1| DNA ligase (NAD(+)) [Mycoplasma pneumoniae FH]
Length = 658
Score = 95.3 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 34/59 (57%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ ++ +V+ + YY LD+PL +D YD++ ++L AL++ PEL D P VG
Sbjct: 4 VAQIRAIVEQLKRYDYHYYVLDDPLVSDFEYDQLYKQLQALEQAHPELIQPDSPTQRVG 62
>gi|167756540|ref|ZP_02428667.1| hypothetical protein CLORAM_02077 [Clostridium ramosum DSM 1402]
gi|167702715|gb|EDS17294.1| hypothetical protein CLORAM_02077 [Clostridium ramosum DSM 1402]
Length = 664
Score = 95.3 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 27/58 (46%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L L+H YY DNP TD YD + + L L+++ PE D P VG
Sbjct: 5 SRYKELKATILYHNDRYYNQDNPEITDYEYDMMMQELKGLEQKHPEYITSDSPTQKVG 62
>gi|186476101|ref|YP_001857571.1| DNA ligase, NAD-dependent [Burkholderia phymatum STM815]
gi|254781277|sp|B2JID1|DNLJ_BURP8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|184192560|gb|ACC70525.1| DNA ligase, NAD-dependent [Burkholderia phymatum STM815]
Length = 683
Score = 95.3 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 24/59 (40%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+L YY LD P D YDR+ + L ++ + P+L D P VG
Sbjct: 15 AERALWLRDELERANYAYYVLDQPDLPDAEYDRLFKELQQIESEHPDLITPDSPTQRVG 73
>gi|13508096|ref|NP_110045.1| DNA ligase [Mycoplasma pneumoniae M129]
gi|2494169|sp|P78021|DNLJ_MYCPN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|1674170|gb|AAB96127.1| DNA ligase [Mycoplasma pneumoniae M129]
Length = 658
Score = 95.3 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 34/59 (57%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ ++ +V+ + YY LD+PL +D YD++ ++L AL++ PEL D P VG
Sbjct: 4 VAQIRAIVEQLKRYDYHYYVLDDPLVSDFEYDQLYKQLQALEQAHPELIQPDSPTQRVG 62
>gi|296270799|ref|YP_003653431.1| NAD-dependent DNA ligase [Thermobispora bispora DSM 43833]
gi|296093586|gb|ADG89538.1| DNA ligase, NAD-dependent [Thermobispora bispora DSM 43833]
Length = 732
Score = 94.9 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L ++ YY LD+P +D YD + L+E++P+L D P VG
Sbjct: 20 RHAELAELIEEANWRYYVLDSPTVSDAEYDAWMREIRELEERYPDLRTPDSPTQKVG 76
>gi|58426627|gb|AAW75664.1| DNA ligase [Xanthomonas oryzae pv. oryzae KACC10331]
Length = 961
Score = 94.9 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 39 RALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLD 98
RA+E + + V ++ +G + L + + YY L +P TD YD++ L
Sbjct: 106 RAIELKILSGQLVETMEQG-VIERARELRRRIENADHRYYDLADPEITDAQYDQLFRELQ 164
Query: 99 ALQEQFPELFDEDHPWNTVG 118
L++++PEL D P VG
Sbjct: 165 ELEQKYPELVTADSPSMRVG 184
>gi|149183793|ref|ZP_01862194.1| NAD-dependent DNA ligase LigA [Bacillus sp. SG-1]
gi|148848496|gb|EDL62745.1| NAD-dependent DNA ligase LigA [Bacillus sp. SG-1]
Length = 668
Score = 94.9 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 30/65 (46%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ A +V L + + Y+ LD P D YDRV L A++ +FPEL D P
Sbjct: 1 MDIKSAEQKVAELHNLLNQYNYEYHVLDKPSVPDAEYDRVMNELIAIETEFPELRTPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|262394922|ref|YP_003286776.1| DNA ligase [Vibrio sp. Ex25]
gi|262338516|gb|ACY52311.1| DNA ligase [Vibrio sp. Ex25]
Length = 690
Score = 94.9 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 28/62 (45%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ +E L + +H YY DNP D YDR+ L ++ + P+L D P
Sbjct: 23 ESVLQRLEELKESLHYHAVRYYVEDNPEIPDAEYDRLMRELLDIEAENPDLITVDSPSQR 82
Query: 117 VG 118
VG
Sbjct: 83 VG 84
>gi|114327083|ref|YP_744240.1| NAD-dependent DNA ligase [Granulibacter bethesdensis CGDNIH1]
gi|122327935|sp|Q0BV35|DNLJ_GRABC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|114315257|gb|ABI61317.1| NAD-dependent DNA ligase [Granulibacter bethesdensis CGDNIH1]
Length = 700
Score = 94.9 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 33/70 (47%)
Query: 49 KKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF 108
+LS EA E+E L YYR D PL TD YD + +R ++ FP+
Sbjct: 12 TPPEALSPAEARAELERLASRIAELDDAYYRDDAPLVTDADYDALRQRNAEIERLFPDAI 71
Query: 109 DEDHPWNTVG 118
++ P N VG
Sbjct: 72 LKNSPANRVG 81
>gi|300856841|ref|YP_003781825.1| DNA ligase [Clostridium ljungdahlii DSM 13528]
gi|300436956|gb|ADK16723.1| DNA ligase [Clostridium ljungdahlii DSM 13528]
Length = 664
Score = 94.9 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 27/59 (45%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L KI +H YY DNP +D YD + + L ++ + PE+ D P VG
Sbjct: 4 EDRYNELKKIINYHNDRYYNQDNPEVSDYEYDMLMQELKNIEREHPEVITPDSPTQHVG 62
>gi|301169841|emb|CBW29445.1| DNA ligase, NAD(+)-dependent [Haemophilus influenzae 10810]
Length = 670
Score = 94.9 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L K ++ Y+ LD+P D YDR+ +L AL+ + PE D P VG
Sbjct: 4 IQTQLDNLRKTLRQYEYEYHVLDHPSVPDSEYDRLFHQLKALELEHPEFLTSDSPTQRVG 63
>gi|163731899|ref|ZP_02139346.1| DNA ligase, NAD-dependent [Roseobacter litoralis Och 149]
gi|161395353|gb|EDQ19675.1| DNA ligase, NAD-dependent [Roseobacter litoralis Och 149]
Length = 705
Score = 94.9 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 33/69 (47%)
Query: 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
+ SL++ A E+ L ++ Y+ D P +D YD R AL+++FP L
Sbjct: 5 PLDSLNEKAAEEELSRLAELLEQANTAYHTKDAPFMSDAEYDAYKRRNLALEDRFPHLKR 64
Query: 110 EDHPWNTVG 118
D P + VG
Sbjct: 65 ADSPTDVVG 73
>gi|218439827|ref|YP_002378156.1| DNA ligase, NAD-dependent [Cyanothece sp. PCC 7424]
gi|254781306|sp|B7K8U0|DNLJ_CYAP7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|218172555|gb|ACK71288.1| DNA ligase, NAD-dependent [Cyanothece sp. PCC 7424]
Length = 678
Score = 94.9 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 29/61 (47%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E V+ L YY LDNP+ D +YD++ L ++ Q+PEL D P V
Sbjct: 7 EIKQRVDQLRSQLQKASYAYYVLDNPIMEDVVYDQLYRELQNIETQYPELITPDSPTQRV 66
Query: 118 G 118
G
Sbjct: 67 G 67
>gi|254448715|ref|ZP_05062173.1| DNA ligase, NAD-dependent [gamma proteobacterium HTCC5015]
gi|198261723|gb|EDY86010.1| DNA ligase, NAD-dependent [gamma proteobacterium HTCC5015]
Length = 673
Score = 94.9 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 28/56 (50%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L + H YY LD P D YDR+ L +L+ Q+PE +D P VG
Sbjct: 11 IDSLREQLHQHAHAYYVLDEPSIPDAEYDRLFRELQSLEAQYPESHSDDSPTQRVG 66
>gi|91793866|ref|YP_563517.1| DNA ligase, NAD-dependent [Shewanella denitrificans OS217]
gi|123165936|sp|Q12L82|DNLJ_SHEDO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|91715868|gb|ABE55794.1| DNA ligase, NAD-dependent [Shewanella denitrificans OS217]
Length = 670
Score = 94.9 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 30/60 (50%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ LV H YY D P TD YD++ ++L AL+ + PEL D P VG
Sbjct: 4 IQLQIANLVNELNQHNIKYYVDDAPSVTDAYYDKLMQQLLALEAEHPELIQSDSPSRRVG 63
>gi|17546117|ref|NP_519519.1| DNA ligase (polydeoxyribonucleotide synthase [NAD+]) protein
[Ralstonia solanacearum GMI1000]
gi|81505313|sp|Q8XZJ7|DNLJ_RALSO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|17428413|emb|CAD15100.1| putative dna ligase (polydeoxyribonucleotide synthase [nad+])
protein [Ralstonia solanacearum GMI1000]
Length = 813
Score = 94.9 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 25/59 (42%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L + YY LD P D YDR+ L+AL+ + PEL D P VG
Sbjct: 14 ETRAAALRATLNRYAHEYYVLDQPSVPDAEYDRLYRELEALEAEHPELRTPDSPTLRVG 72
>gi|307729327|ref|YP_003906551.1| DNA ligase, NAD-dependent [Burkholderia sp. CCGE1003]
gi|307583862|gb|ADN57260.1| DNA ligase, NAD-dependent [Burkholderia sp. CCGE1003]
Length = 688
Score = 94.9 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 26/59 (44%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+L YY LD P D YDR+ + L++++ + P+L D P VG
Sbjct: 15 AERAAWLRTELERANYAYYVLDQPDLPDAEYDRLFKELESIEAEHPDLIVPDSPTQRVG 73
>gi|84686905|ref|ZP_01014789.1| DNA ligase, NAD-dependent [Maritimibacter alkaliphilus HTCC2654]
gi|84665102|gb|EAQ11582.1| DNA ligase, NAD-dependent [Rhodobacterales bacterium HTCC2654]
Length = 710
Score = 94.9 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 30/68 (44%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V L + A E+ L + Y+ D P +D YD R ++ +FPEL +
Sbjct: 9 VEKLDEAGARAELARLADLLASANTAYHTEDAPEMSDAAYDAAKRRNAEIEARFPELKRD 68
Query: 111 DHPWNTVG 118
D P + VG
Sbjct: 69 DSPTDQVG 76
>gi|126174866|ref|YP_001051015.1| DNA ligase (NAD(+)) [Shewanella baltica OS155]
gi|125998071|gb|ABN62146.1| DNA ligase (NAD(+)) [Shewanella baltica OS155]
Length = 145
Score = 94.9 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 30/67 (44%)
Query: 52 TSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
++ A ++ L + H YY D P TD YDR+ +RL L+ +P L D
Sbjct: 12 EDVTPENASQVMQALSQPLNEHNIRYYVDDAPSITDSEYDRLMQRLLKLEALYPHLIVAD 71
Query: 112 HPWNTVG 118
P VG
Sbjct: 72 SPTQRVG 78
>gi|114565926|ref|YP_753080.1| DNA ligase (NAD(+)) [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
gi|122318951|sp|Q0AZZ5|DNLJ_SYNWW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|114336861|gb|ABI67709.1| DNA ligase (NAD(+)) [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
Length = 661
Score = 94.9 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E ++ L + H YY LD PL +D YDR+ + L L+E++P+ D P V
Sbjct: 2 EVSSRIKELREEMQKHDYHYYILDAPLISDSGYDRLMQELKKLEEEYPQYITADSPTQRV 61
>gi|93005182|ref|YP_579619.1| DNA ligase, NAD-dependent [Psychrobacter cryohalolentis K5]
gi|122989955|sp|Q1QDW8|DNLJ_PSYCK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|92392860|gb|ABE74135.1| DNA ligase, NAD-dependent [Psychrobacter cryohalolentis K5]
Length = 691
Score = 94.9 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
++ AK + + + ++ + H YY LDNP+ D YD++ L L+E++
Sbjct: 13 INTAKSAAN--EDAIVAQMRTFIDALKKHNYAYYVLDNPILEDSEYDQLRRSLLELEEEY 70
Query: 105 PELFDEDHPWNTVG 118
P+L D P N VG
Sbjct: 71 PDLIQPDSPINQVG 84
>gi|291299865|ref|YP_003511143.1| DNA ligase NAD-dependent [Stackebrandtia nassauensis DSM 44728]
gi|290569085|gb|ADD42050.1| DNA ligase, NAD-dependent [Stackebrandtia nassauensis DSM 44728]
Length = 749
Score = 94.9 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 27/64 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
A L H++ Y+R D P +D YD + L A++E P L +D P
Sbjct: 14 DFDAARERHTKLAAEIDRHRQLYHRDDAPQISDAEYDALMRELLAIEEAHPVLATQDSPS 73
Query: 115 NTVG 118
VG
Sbjct: 74 QQVG 77
>gi|317455470|pdb|3PN1|A Chain A, Novel Bacterial Nad+-Dependent Dna Ligase Inhibitors With
Broad Spectrum Potency And Antibacterial Efficacy In
Vivo
Length = 318
Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L K ++ Y+ LDNP D YDR+ +L AL+ + PE D P VG
Sbjct: 4 IQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPTQRVG 63
>gi|308388851|gb|ADO31171.1| DNA ligase [Neisseria meningitidis alpha710]
gi|325202538|gb|ADY97992.1| DNA ligase, NAD-dependent [Neisseria meningitidis M01-240149]
gi|325207712|gb|ADZ03164.1| DNA ligase, NAD-dependent [Neisseria meningitidis NZ-05/33]
Length = 841
Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 37/83 (44%)
Query: 36 PNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSE 95
PN + ++ + K S K A + +L + + YY LD P D YD++
Sbjct: 3 PNSKHNTNFTNLLKPSDSDIKQFAAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFR 62
Query: 96 RLDALQEQFPELFDEDHPWNTVG 118
L+AL+ PEL D P VG
Sbjct: 63 ELEALELNHPELKLPDSPTQRVG 85
>gi|91784125|ref|YP_559331.1| NAD-dependent DNA ligase [Burkholderia xenovorans LB400]
gi|123358676|sp|Q13XB0|DNLJ_BURXL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|91688079|gb|ABE31279.1| NAD-dependent DNA ligase [Burkholderia xenovorans LB400]
Length = 688
Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 29/70 (41%)
Query: 49 KKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF 108
V+ + +L YY LD P D YDR+ + L++++ + P+L
Sbjct: 4 TPVSPPATSAPAERAAWLRAELERANYAYYVLDQPDLPDAEYDRLFKELESIETEHPDLI 63
Query: 109 DEDHPWNTVG 118
D P VG
Sbjct: 64 VPDSPTQRVG 73
>gi|325137931|gb|EGC60506.1| DNA ligase, NAD-dependent [Neisseria meningitidis ES14902]
Length = 841
Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 37/83 (44%)
Query: 36 PNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSE 95
PN + ++ + K S K A + +L + + YY LD P D YD++
Sbjct: 3 PNSKHNTNFTNLLKPSDSDIKQFAAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFR 62
Query: 96 RLDALQEQFPELFDEDHPWNTVG 118
L+AL+ PEL D P VG
Sbjct: 63 ELEALELNHPELKLPDSPTQRVG 85
>gi|325203753|gb|ADY99206.1| DNA ligase, NAD-dependent [Neisseria meningitidis M01-240355]
Length = 841
Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 37/83 (44%)
Query: 36 PNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSE 95
PN + ++ + K S K A + +L + + YY LD P D YD++
Sbjct: 3 PNSKHNTNFTNLLKPSDSDIKQFAAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFR 62
Query: 96 RLDALQEQFPELFDEDHPWNTVG 118
L+AL+ PEL D P VG
Sbjct: 63 ELEALELNHPELKLPDSPTQRVG 85
>gi|296158912|ref|ZP_06841740.1| DNA ligase, NAD-dependent [Burkholderia sp. Ch1-1]
gi|295890787|gb|EFG70577.1| DNA ligase, NAD-dependent [Burkholderia sp. Ch1-1]
Length = 688
Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 29/70 (41%)
Query: 49 KKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF 108
V+ + +L YY LD P D YDR+ + L++++ + P+L
Sbjct: 4 TPVSPPATSAPAERAAWLRAELERANYAYYVLDQPDLPDAEYDRLFKELESIETEHPDLI 63
Query: 109 DEDHPWNTVG 118
D P VG
Sbjct: 64 VPDSPTQRVG 73
>gi|34499358|ref|NP_903573.1| DNA ligase [Chromobacterium violaceum ATCC 12472]
gi|81654398|sp|Q7NR81|DNLJ_CHRVO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|34105208|gb|AAQ61564.1| DNA ligase [Chromobacterium violaceum ATCC 12472]
Length = 821
Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 27/59 (45%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L ++ + YY LD P D YDR+ L AL+E PEL D P VG
Sbjct: 23 ELRAAELRELLNRYGHEYYVLDAPTVPDAEYDRLFRELQALEEAHPELAVSDSPTRRVG 81
>gi|116669859|ref|YP_830792.1| DNA ligase, NAD-dependent [Arthrobacter sp. FB24]
gi|166215392|sp|A0JUH2|DNLJ_ARTS2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|116609968|gb|ABK02692.1| DNA ligase, NAD-dependent [Arthrobacter sp. FB24]
Length = 790
Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
G E E LV+ H+ YY+ D P+ +D +D + RL+ ++ PEL D P
Sbjct: 49 GAVREEYENLVEEVRKHRFAYYQEDAPIISDAEFDELFRRLETIEAMHPELVANDSPTQE 108
Query: 117 VG 118
VG
Sbjct: 109 VG 110
>gi|295111571|emb|CBL28321.1| DNA ligase, NAD-dependent [Synergistetes bacterium SGP1]
Length = 683
Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 23/59 (38%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L + HH + YY D P D YD + L L+ P+ D P VG
Sbjct: 18 AARMAELYEELAHHARLYYDEDAPEIPDAEYDALVRELAELERAHPDRVRPDSPTRRVG 76
>gi|187928361|ref|YP_001898848.1| DNA ligase [Ralstonia pickettii 12J]
gi|254781397|sp|B2UB00|DNLJ_RALPJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|187725251|gb|ACD26416.1| DNA ligase, NAD-dependent [Ralstonia pickettii 12J]
Length = 817
Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Query: 41 LESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDAL 100
+ + A S + EA +L + YY LD P D YDR+ L+AL
Sbjct: 1 MSKTEEPASGPPSKDRPEARA--AWLRAELNRYAHEYYVLDQPSVPDVEYDRLYRELEAL 58
Query: 101 QEQFPELFDEDHPWNTVG 118
+ + PEL D P VG
Sbjct: 59 ETEHPELKTPDSPTLRVG 76
>gi|194366356|ref|YP_002028966.1| NAD-dependent DNA ligase LigA [Stenotrophomonas maltophilia R551-3]
gi|254781422|sp|B4SP88|DNLJ_STRM5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|194349160|gb|ACF52283.1| DNA ligase, NAD-dependent [Stenotrophomonas maltophilia R551-3]
Length = 821
Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 27/59 (45%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E L + + Y+ LD P D YDR+ L+AL+ + PEL D P VG
Sbjct: 6 AERAEDLRRQIAQANRAYHELDAPEIPDVDYDRMVRELEALEREHPELARADSPTQQVG 64
>gi|59800688|ref|YP_207400.1| putative DNA ligase [Neisseria gonorrhoeae FA 1090]
gi|75356380|sp|Q5F9Z9|DNLJ_NEIG1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|59717583|gb|AAW88988.1| putative DNA ligase [Neisseria gonorrhoeae FA 1090]
Length = 823
Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 26/59 (44%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L + + YY LD P D YDR+ L+AL+ PEL D P VG
Sbjct: 5 AQRIHELTDLLNRYAYEYYTLDAPSIPDAEYDRLFRELEALERNHPELKLPDSPTQRVG 63
>gi|332638905|ref|ZP_08417768.1| NAD-dependent DNA ligase [Weissella cibaria KACC 11862]
Length = 678
Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 37/74 (50%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
+D + + +++ EA E++ L + + YY D P D +YDR RL+AL+ +
Sbjct: 1 MDNFQDIATMTVIEAKAEIDALQQDLKQWAQEYYENDAPSVEDAVYDREYNRLEALEAAY 60
Query: 105 PELFDEDHPWNTVG 118
PEL D VG
Sbjct: 61 PELVTPDSITQQVG 74
>gi|315187042|gb|EFU20799.1| DNA ligase, NAD-dependent [Spirochaeta thermophila DSM 6578]
Length = 697
Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 34/65 (52%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+++ EA E++ LV++ YY L P TD YD + ERL L+ +FP L D P
Sbjct: 1 MTEQEAKREIDRLVELLQRADYEYYVLGRPHLTDQEYDSLFERLKTLETRFPHLRRPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 IQRVG 65
>gi|283850424|ref|ZP_06367713.1| DNA ligase, NAD-dependent [Desulfovibrio sp. FW1012B]
gi|283574450|gb|EFC22421.1| DNA ligase, NAD-dependent [Desulfovibrio sp. FW1012B]
Length = 697
Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 27/64 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S + + L + H YY LD+P D YD + L L+ PEL D + P
Sbjct: 4 SDSDPRARLAALRDLIHFHNHRYYVLDDPQIEDAAYDALYRELVTLEAAHPELADPNSPT 63
Query: 115 NTVG 118
VG
Sbjct: 64 RRVG 67
>gi|254523079|ref|ZP_05135134.1| DNA ligase, NAD-dependent [Stenotrophomonas sp. SKA14]
gi|219720670|gb|EED39195.1| DNA ligase, NAD-dependent [Stenotrophomonas sp. SKA14]
Length = 821
Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 27/59 (45%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E L + + Y+ LD P D YDR+ L+AL+ + PEL D P VG
Sbjct: 6 AERAEDLRRQIAQANRAYHELDAPEIPDVDYDRMVRELEALEREHPELARADSPTQQVG 64
>gi|121634462|ref|YP_974707.1| DNA ligase [Neisseria meningitidis FAM18]
gi|166216218|sp|A1KSS7|DNLJ_NEIMF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|120866168|emb|CAM09908.1| putative DNA ligase [Neisseria meningitidis FAM18]
Length = 841
Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 37/83 (44%)
Query: 36 PNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSE 95
PN + ++ + K S K A + +L + + YY LD P D YD++
Sbjct: 3 PNSKHNTNFTNLLKPSDSDIKQFAAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFR 62
Query: 96 RLDALQEQFPELFDEDHPWNTVG 118
L+AL+ PEL D P VG
Sbjct: 63 ELEALELNHPELKLPDSPTQRVG 85
>gi|240115079|ref|ZP_04729141.1| putative DNA ligase [Neisseria gonorrhoeae PID18]
gi|240125172|ref|ZP_04738058.1| putative DNA ligase [Neisseria gonorrhoeae SK-92-679]
gi|240127627|ref|ZP_04740288.1| putative DNA ligase [Neisseria gonorrhoeae SK-93-1035]
Length = 823
Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 26/59 (44%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L + + YY LD P D YDR+ L+AL+ PEL D P VG
Sbjct: 5 AQRIHELTDLLNRYAYEYYTLDAPSIPDAEYDRLFRELEALERNHPELKLPDSPTQRVG 63
>gi|325131881|gb|EGC54581.1| DNA ligase, NAD-dependent [Neisseria meningitidis M6190]
Length = 841
Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 37/83 (44%)
Query: 36 PNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSE 95
PN + ++ + K S K A + +L + + YY LD P D YD++
Sbjct: 3 PNSKHNTNFTNLLKPSDSDIKQFAAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFR 62
Query: 96 RLDALQEQFPELFDEDHPWNTVG 118
L+AL+ PEL D P VG
Sbjct: 63 ELEALELNHPELKLPDSPTQRVG 85
>gi|218885555|ref|YP_002434876.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris str. 'Miyazaki
F']
gi|254781315|sp|B8DJT6|DNLJ_DESVM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|218756509|gb|ACL07408.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris str. 'Miyazaki
F']
Length = 808
Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 26/55 (47%)
Query: 64 EYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E L +H YY LD+ +D YD + L ++ ++P L D P + VG
Sbjct: 38 EALRDQLNYHSHRYYVLDDAEISDAEYDALFRELQDIEAEWPSLRTPDSPTHRVG 92
>gi|190575033|ref|YP_001972878.1| NAD-dependent DNA ligase LigA [Stenotrophomonas maltophilia K279a]
gi|254781423|sp|B2FKJ1|DNLJ_STRMK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|190012955|emb|CAQ46587.1| putative DNA ligase [Stenotrophomonas maltophilia K279a]
Length = 821
Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 27/59 (45%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E L + + Y+ LD P D YDR+ L+AL+ + PEL D P VG
Sbjct: 6 AERAEDLRRQIAQANRAYHELDAPEIPDVDYDRMVRELEALEREHPELARADSPTQQVG 64
>gi|240013546|ref|ZP_04720459.1| putative DNA ligase [Neisseria gonorrhoeae DGI18]
gi|240120618|ref|ZP_04733580.1| putative DNA ligase [Neisseria gonorrhoeae PID24-1]
Length = 823
Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 26/59 (44%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L + + YY LD P D YDR+ L+AL+ PEL D P VG
Sbjct: 5 AQRIHELTDLLNRYAYEYYTLDAPSIPDAEYDRLFRELEALERNHPELKLPDSPTQRVG 63
>gi|329912476|ref|ZP_08275756.1| DNA ligase [Oxalobacteraceae bacterium IMCC9480]
gi|327545605|gb|EGF30768.1| DNA ligase [Oxalobacteraceae bacterium IMCC9480]
Length = 679
Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY LDNP+ D YD + L+AL+ PEL D P VG
Sbjct: 22 RHAHAYYVLDNPVIPDADYDLLFRELEALEASHPELVTADSPTRRVG 68
>gi|194097948|ref|YP_002000994.1| putative DNA ligase [Neisseria gonorrhoeae NCCP11945]
gi|239998421|ref|ZP_04718345.1| putative DNA ligase [Neisseria gonorrhoeae 35/02]
gi|254781380|sp|B4RJQ9|DNLJ_NEIG2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|193933238|gb|ACF29062.1| putative DNA ligase [Neisseria gonorrhoeae NCCP11945]
gi|317163707|gb|ADV07248.1| putative DNA ligase [Neisseria gonorrhoeae TCDC-NG08107]
Length = 823
Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 26/59 (44%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L + + YY LD P D YDR+ L+AL+ PEL D P VG
Sbjct: 5 AQRIHELTDLLNRYAYEYYTLDAPSIPDAEYDRLFRELEALERNHPELKLPDSPTQRVG 63
>gi|94986686|ref|YP_594619.1| NAD-dependent DNA ligase [Lawsonia intracellularis PHE/MN1-00]
gi|123385090|sp|Q1MRS8|DNLJ_LAWIP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|94730935|emb|CAJ54298.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Lawsonia
intracellularis PHE/MN1-00]
Length = 682
Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 30/66 (45%)
Query: 53 SLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDH 112
SL + V L K HH YY LD+P +D YD+ + L L+ FP L +
Sbjct: 9 SLPSKKEKQRVRELRKFINHHNYLYYTLDDPEISDSEYDKAFQELLTLENTFPSLKTNNS 68
Query: 113 PWNTVG 118
P VG
Sbjct: 69 PTQKVG 74
>gi|326392616|ref|ZP_08213952.1| DNA ligase (NAD(+)) [Thermoanaerobacter ethanolicus JW 200]
gi|325991342|gb|EGD49998.1| DNA ligase (NAD(+)) [Thermoanaerobacter ethanolicus JW 200]
Length = 210
Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 24/48 (50%)
Query: 71 LHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+H YY LD P +D YD + L L+E++PE D P VG
Sbjct: 20 NYHNYRYYVLDQPEISDYEYDMLMRELIELEEKYPEFKTPDSPSQRVG 67
>gi|312114833|ref|YP_004012429.1| DNA ligase, NAD-dependent [Rhodomicrobium vannielii ATCC 17100]
gi|311219962|gb|ADP71330.1| DNA ligase, NAD-dependent [Rhodomicrobium vannielii ATCC 17100]
Length = 777
Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 49 KKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF 108
K LS +A E + L H Y + P +D YDR+ RL+AL+ FP L
Sbjct: 54 KHAEHLSAEDAKDEHDALAAEIARHDLLY-QDAAPEISDAEYDRLRLRLNALEAAFPSLI 112
Query: 109 DEDHPWNTVG 118
+ P TVG
Sbjct: 113 TPESPSQTVG 122
>gi|325197886|gb|ADY93342.1| DNA ligase, NAD-dependent [Neisseria meningitidis G2136]
Length = 841
Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 36/83 (43%)
Query: 36 PNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSE 95
PN + ++ + K S K A + L + + YY LD P D YD++
Sbjct: 3 PNSKHNTNFTNLLKPSDSDIKQFAAQHICRLTDLLNRYAYEYYTLDAPSVPDAEYDKLFR 62
Query: 96 RLDALQEQFPELFDEDHPWNTVG 118
L+AL+ PEL D P VG
Sbjct: 63 ELEALELNHPELKLPDSPTQRVG 85
>gi|311029281|ref|ZP_07707371.1| NAD-dependent DNA ligase LigA [Bacillus sp. m3-13]
Length = 668
Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 32/65 (49%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + +A V L + + Y+ LD P +D YD + + L L+++ PEL ED P
Sbjct: 1 MEREQAEKRVRELHDVLNQYNYEYHVLDKPSVSDAEYDSLLQELLTLEKEHPELQTEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|268600753|ref|ZP_06134920.1| DNA ligase [Neisseria gonorrhoeae PID18]
gi|268683767|ref|ZP_06150629.1| DNA ligase [Neisseria gonorrhoeae SK-92-679]
gi|268686007|ref|ZP_06152869.1| DNA ligase [Neisseria gonorrhoeae SK-93-1035]
gi|293399617|ref|ZP_06643770.1| DNA ligase, NAD-dependent [Neisseria gonorrhoeae F62]
gi|268584884|gb|EEZ49560.1| DNA ligase [Neisseria gonorrhoeae PID18]
gi|268624051|gb|EEZ56451.1| DNA ligase [Neisseria gonorrhoeae SK-92-679]
gi|268626291|gb|EEZ58691.1| DNA ligase [Neisseria gonorrhoeae SK-93-1035]
gi|291610186|gb|EFF39308.1| DNA ligase, NAD-dependent [Neisseria gonorrhoeae F62]
Length = 829
Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 26/59 (44%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L + + YY LD P D YDR+ L+AL+ PEL D P VG
Sbjct: 11 AQRIHELTDLLNRYAYEYYTLDAPSIPDAEYDRLFRELEALERNHPELKLPDSPTQRVG 69
>gi|240122918|ref|ZP_04735874.1| putative DNA ligase [Neisseria gonorrhoeae PID332]
Length = 823
Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 26/59 (44%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L + + YY LD P D YDR+ L+AL+ PEL D P VG
Sbjct: 5 AQRIHELTDLLNRYAYEYYTLDAPSIPDAEYDRLFRELEALERNHPELKLPDSPTQRVG 63
>gi|240080125|ref|ZP_04724668.1| putative DNA ligase [Neisseria gonorrhoeae FA19]
gi|240117363|ref|ZP_04731425.1| putative DNA ligase [Neisseria gonorrhoeae PID1]
gi|260441105|ref|ZP_05794921.1| putative DNA ligase [Neisseria gonorrhoeae DGI2]
Length = 823
Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 26/59 (44%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L + + YY LD P D YDR+ L+AL+ PEL D P VG
Sbjct: 5 AQRIHELTDLLNRYAYEYYTLDAPSIPDAEYDRLFRELEALERNHPELKLPDSPTQRVG 63
>gi|240015985|ref|ZP_04722525.1| putative DNA ligase [Neisseria gonorrhoeae FA6140]
gi|240112339|ref|ZP_04726829.1| putative DNA ligase [Neisseria gonorrhoeae MS11]
Length = 823
Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 26/59 (44%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L + + YY LD P D YDR+ L+AL+ PEL D P VG
Sbjct: 5 AQRIHELTDLLNRYAYEYYTLDAPSIPDAEYDRLFRELEALERNHPELKLPDSPTQRVG 63
>gi|268594283|ref|ZP_06128450.1| DNA ligase [Neisseria gonorrhoeae 35/02]
gi|268547672|gb|EEZ43090.1| DNA ligase [Neisseria gonorrhoeae 35/02]
Length = 827
Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 26/59 (44%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L + + YY LD P D YDR+ L+AL+ PEL D P VG
Sbjct: 9 AQRIHELTDLLNRYAYEYYTLDAPSIPDAEYDRLFRELEALERNHPELKLPDSPTQRVG 67
>gi|328542977|ref|YP_004303086.1| DNA ligase, NAD(+)-dependent [polymorphum gilvum SL003B-26A1]
gi|326412723|gb|ADZ69786.1| DNA ligase, NAD(+)-dependent [Polymorphum gilvum SL003B-26A1]
Length = 721
Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 37/71 (52%)
Query: 48 AKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
A V SLS+ EA E+ L H + Y+ D P +D YD + R A++E+FP+L
Sbjct: 7 AAAVESLSRQEAEAELARLAAEIAAHDQRYFAEDAPTVSDAEYDALRRRNAAIEERFPDL 66
Query: 108 FDEDHPWNTVG 118
ED P +G
Sbjct: 67 VREDSPSARIG 77
>gi|268681538|ref|ZP_06148400.1| DNA ligase [Neisseria gonorrhoeae PID332]
gi|268621822|gb|EEZ54222.1| DNA ligase [Neisseria gonorrhoeae PID332]
Length = 829
Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 26/59 (44%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L + + YY LD P D YDR+ L+AL+ PEL D P VG
Sbjct: 11 AQRIHELTDLLNRYAYEYYTLDAPSIPDAEYDRLFRELEALERNHPELKLPDSPTQRVG 69
>gi|268596277|ref|ZP_06130444.1| DNA ligase [Neisseria gonorrhoeae FA19]
gi|268603059|ref|ZP_06137226.1| DNA ligase [Neisseria gonorrhoeae PID1]
gi|291044437|ref|ZP_06570146.1| DNA ligase [Neisseria gonorrhoeae DGI2]
gi|268550065|gb|EEZ45084.1| DNA ligase [Neisseria gonorrhoeae FA19]
gi|268587190|gb|EEZ51866.1| DNA ligase [Neisseria gonorrhoeae PID1]
gi|291011331|gb|EFE03327.1| DNA ligase [Neisseria gonorrhoeae DGI2]
Length = 829
Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 26/59 (44%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L + + YY LD P D YDR+ L+AL+ PEL D P VG
Sbjct: 11 AQRIHELTDLLNRYAYEYYTLDAPSIPDAEYDRLFRELEALERNHPELKLPDSPTQRVG 69
>gi|254493140|ref|ZP_05106311.1| DNA ligase [Neisseria gonorrhoeae 1291]
gi|268598398|ref|ZP_06132565.1| DNA ligase [Neisseria gonorrhoeae MS11]
gi|226512180|gb|EEH61525.1| DNA ligase [Neisseria gonorrhoeae 1291]
gi|268582529|gb|EEZ47205.1| DNA ligase [Neisseria gonorrhoeae MS11]
Length = 829
Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 26/59 (44%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L + + YY LD P D YDR+ L+AL+ PEL D P VG
Sbjct: 11 AQRIHELTDLLNRYAYEYYTLDAPSIPDAEYDRLFRELEALERNHPELKLPDSPTQRVG 69
>gi|222110866|ref|YP_002553130.1| NAD-dependent DNA ligase [Acidovorax ebreus TPSY]
gi|254781316|sp|B9MIW4|DNLJ_DIAST RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|221730310|gb|ACM33130.1| DNA ligase, NAD-dependent [Acidovorax ebreus TPSY]
Length = 740
Score = 94.5 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 25/59 (42%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+++ L + YY D P D YDR + L AL+ +P+L D P V
Sbjct: 28 VAAKIKALREQLNRWAHEYYVQDTPSVPDAEYDRAFQELQALEGAYPDLVTPDSPTQRV 86
>gi|15676564|ref|NP_273708.1| DNA ligase [Neisseria meningitidis MC58]
gi|161869603|ref|YP_001598770.1| DNA ligase [Neisseria meningitidis 053442]
gi|304388085|ref|ZP_07370214.1| NAD-dependent DNA ligase LigA [Neisseria meningitidis ATCC 13091]
gi|81784869|sp|Q9K0E3|DNLJ_NEIMB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|190359266|sp|A9M2U7|DNLJ_NEIM0 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|7225892|gb|AAF41084.1| DNA ligase [Neisseria meningitidis MC58]
gi|161595156|gb|ABX72816.1| DNA ligase [Neisseria meningitidis 053442]
gi|304337942|gb|EFM04082.1| NAD-dependent DNA ligase LigA [Neisseria meningitidis ATCC 13091]
gi|316983632|gb|EFV62613.1| DNA ligase, NAD-dependent [Neisseria meningitidis H44/76]
gi|325139885|gb|EGC62416.1| DNA ligase, NAD-dependent [Neisseria meningitidis CU385]
gi|325200648|gb|ADY96103.1| DNA ligase, NAD-dependent [Neisseria meningitidis H44/76]
Length = 841
Score = 94.5 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 36/83 (43%)
Query: 36 PNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSE 95
PN + ++ + K S K A + L + + YY LD P D YD++
Sbjct: 3 PNSKHNTNFTNLLKPSDSDIKQFAAQHICRLTDLLNRYAYEYYTLDAPSVPDAEYDKLFR 62
Query: 96 RLDALQEQFPELFDEDHPWNTVG 118
L+AL+ PEL D P VG
Sbjct: 63 ELEALELNHPELKLPDSPTQRVG 85
>gi|325681379|ref|ZP_08160905.1| DNA ligase (NAD+) [Ruminococcus albus 8]
gi|324106869|gb|EGC01159.1| DNA ligase (NAD+) [Ruminococcus albus 8]
Length = 665
Score = 94.5 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 28/68 (41%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
+ K A ++ LV +H YY D +D YD + L L+ Q+PE
Sbjct: 5 IEMADKDNAKKRIDELVATLNYHAHLYYVEDRNEISDYDYDMMQNELKKLEAQYPEFIRP 64
Query: 111 DHPWNTVG 118
D P VG
Sbjct: 65 DSPTQRVG 72
>gi|159897339|ref|YP_001543586.1| DNA ligase, NAD-dependent [Herpetosiphon aurantiacus ATCC 23779]
gi|254781348|sp|A9AXP4|DNLJ_HERA2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|159890378|gb|ABX03458.1| DNA ligase, NAD-dependent [Herpetosiphon aurantiacus ATCC 23779]
Length = 673
Score = 94.5 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 28/62 (45%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ + L + YY LD PL +D YD + L A++ ++PEL D P
Sbjct: 5 EQTVARAASLRDELNLYNHHYYTLDAPLVSDAQYDSLLNELRAIEAEYPELRTPDSPTQR 64
Query: 117 VG 118
VG
Sbjct: 65 VG 66
>gi|291538763|emb|CBL11874.1| DNA ligase, NAD-dependent [Roseburia intestinalis XB6B4]
Length = 671
Score = 94.1 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ E +++ L +H YY D+P +D +D + ++L L+++ PEL +D P
Sbjct: 1 MTPEE---QIKELRDKINYHSDRYYNQDSPEISDYEFDMLMQQLKKLEKEHPELVTKDSP 57
Query: 114 WNTVG 118
VG
Sbjct: 58 TQHVG 62
>gi|209522379|ref|ZP_03270993.1| DNA ligase, NAD-dependent [Burkholderia sp. H160]
gi|209497185|gb|EDZ97426.1| DNA ligase, NAD-dependent [Burkholderia sp. H160]
Length = 688
Score = 94.1 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 28/70 (40%)
Query: 49 KKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF 108
V + G +L YY LD P D YD++ + L+ ++ + P+L
Sbjct: 4 TPVPPSATGAPADRAAWLRAELERANYAYYVLDQPDLPDAEYDKLFKELERIEAEHPDLI 63
Query: 109 DEDHPWNTVG 118
D P VG
Sbjct: 64 VPDSPTQRVG 73
>gi|330830678|ref|YP_004393630.1| NAD-dependent DNA ligase LigA [Aeromonas veronii B565]
gi|328805814|gb|AEB51013.1| NAD-dependent DNA ligase LigA [Aeromonas veronii B565]
Length = 787
Score = 94.1 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 25/58 (43%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L ++ + YY LDNP D YDR+ L AL+ PEL P VG
Sbjct: 6 SRHRQLCELLTEYGHQYYVLDNPTVPDAEYDRLMRELIALEADHPELKTPASPSVRVG 63
>gi|332299534|ref|YP_004441455.1| DNA ligase [Porphyromonas asaccharolytica DSM 20707]
gi|332176597|gb|AEE12287.1| DNA ligase [Porphyromonas asaccharolytica DSM 20707]
Length = 679
Score = 94.1 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 32/65 (49%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+++ +E+E L H + YY + P +D YD + +RL L+ + PEL D P
Sbjct: 1 MTRNNTELEIEQLRTTIEQHNRAYYLDNAPTISDADYDALMQRLLTLEAEHPELADPTSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SLRVG 65
>gi|159028322|emb|CAO87220.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 669
Score = 94.1 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 30/61 (49%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E + L YY LD+P +D +YD++ L+ +++++P+L D P V
Sbjct: 6 EIQQRCQQLKTELQRASYAYYVLDDPFISDSVYDQLYRELEDIEKRYPQLITPDSPTQRV 65
Query: 118 G 118
G
Sbjct: 66 G 66
>gi|148652285|ref|YP_001279378.1| DNA ligase [Psychrobacter sp. PRwf-1]
gi|190359276|sp|A5WCN7|DNLJ_PSYWF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|148571369|gb|ABQ93428.1| DNA ligase, NAD-dependent [Psychrobacter sp. PRwf-1]
Length = 686
Score = 94.1 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 35/75 (46%)
Query: 44 WLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQ 103
+ A S E + ++ L+ H YY +D P +D YD++ L L+E+
Sbjct: 2 TQNTADTHASAQAQEVIAKMRTLIAQVRKHNNAYYVMDEPTISDNEYDQLRLSLIELEER 61
Query: 104 FPELFDEDHPWNTVG 118
+PEL D P +VG
Sbjct: 62 YPELTQPDSPTASVG 76
>gi|313886637|ref|ZP_07820349.1| DNA ligase (NAD+) [Porphyromonas asaccharolytica PR426713P-I]
gi|312923933|gb|EFR34730.1| DNA ligase (NAD+) [Porphyromonas asaccharolytica PR426713P-I]
Length = 679
Score = 94.1 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 32/65 (49%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+++ +E+E L H + YY + P +D YD + +RL L+ + PEL D P
Sbjct: 1 MTRNNTELEIEQLRTTIEQHNRAYYLDNAPTISDADYDALMQRLLTLEAEHPELADPTSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SLRVG 65
>gi|223986795|ref|ZP_03636777.1| hypothetical protein HOLDEFILI_04100 [Holdemania filiformis DSM
12042]
gi|223961228|gb|EEF65758.1| hypothetical protein HOLDEFILI_04100 [Holdemania filiformis DSM
12042]
Length = 663
Score = 94.1 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ + L + + Y+ LD+P +D YD++ L L++Q PELFD + P VG
Sbjct: 2 SEDRILALRRQLNQYNYEYHVLDHPTVSDAEYDQLMRELITLEQQHPELFDPNSPTQRVG 61
>gi|325127826|gb|EGC50734.1| DNA ligase, NAD-dependent [Neisseria meningitidis N1568]
Length = 841
Score = 94.1 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 35/83 (42%)
Query: 36 PNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSE 95
PN + + K S K A + +L + + YY LD P D YD++
Sbjct: 3 PNSKHNTDLTNLLKPSDSDIKQFAAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFR 62
Query: 96 RLDALQEQFPELFDEDHPWNTVG 118
L+AL+ PEL D P VG
Sbjct: 63 ELEALELNHPELKLPDSPTQRVG 85
>gi|257065343|ref|YP_003145015.1| DNA ligase, NAD-dependent [Slackia heliotrinireducens DSM 20476]
gi|256792996|gb|ACV23666.1| DNA ligase, NAD-dependent [Slackia heliotrinireducens DSM 20476]
Length = 708
Score = 94.1 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 28/69 (40%)
Query: 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
++ + + ++ L K HH YY D P +D +D + L L+ P+ D
Sbjct: 10 DESAATVSDVKARIDALRKEIEHHTYLYYAKDAPEISDAAFDSLMRELRELELANPQYID 69
Query: 110 EDHPWNTVG 118
P VG
Sbjct: 70 PTSPTQRVG 78
>gi|291536367|emb|CBL09479.1| DNA ligase, NAD-dependent [Roseburia intestinalis M50/1]
Length = 671
Score = 94.1 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ E +++ L +H YY D+P +D +D + ++L L+++ PEL +D P
Sbjct: 1 MTPEE---QIKELRDKINYHSDRYYNQDSPEISDYEFDMLMQQLKKLEKEHPELVTKDSP 57
Query: 114 WNTVG 118
VG
Sbjct: 58 TQHVG 62
>gi|240145659|ref|ZP_04744260.1| DNA ligase, NAD-dependent [Roseburia intestinalis L1-82]
gi|257202247|gb|EEV00532.1| DNA ligase, NAD-dependent [Roseburia intestinalis L1-82]
Length = 671
Score = 94.1 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ E +++ L +H YY D+P +D +D + ++L L+++ PEL +D P
Sbjct: 1 MTPEE---QIKELRDKINYHSDRYYNQDSPEISDYEFDMLMQQLKKLEKEHPELVTKDSP 57
Query: 114 WNTVG 118
VG
Sbjct: 58 TQHVG 62
>gi|312898543|ref|ZP_07757933.1| DNA ligase, NAD-dependent [Megasphaera micronuciformis F0359]
gi|310620462|gb|EFQ04032.1| DNA ligase, NAD-dependent [Megasphaera micronuciformis F0359]
Length = 672
Score = 94.1 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 29/66 (43%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + +A + L + + YY LD P TD YD + L+ ++ PE D P
Sbjct: 1 MEQDKAYARLLELREKLDFYSYQYYTLDKPTITDYDYDMLYRELETIEGAHPEWVTADSP 60
Query: 114 WNTVGY 119
VG+
Sbjct: 61 TQRVGH 66
>gi|145627933|ref|ZP_01783734.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 22.1-21]
gi|145640788|ref|ZP_01796371.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae R3021]
gi|144979708|gb|EDJ89367.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 22.1-21]
gi|145274714|gb|EDK14577.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 22.4-21]
Length = 278
Score = 94.1 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L K ++ Y+ LDNP D YDR+ +L AL+ + PE D P VG
Sbjct: 4 IQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPTQRVG 63
>gi|171914081|ref|ZP_02929551.1| DNA ligase, NAD-dependent [Verrucomicrobium spinosum DSM 4136]
Length = 669
Score = 94.1 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
A + V +L + HH + YY+ P +D +D + L L++ P L D P VG
Sbjct: 10 ASLRVAHLREEIEHHNRLYYQNAAPEISDQAFDALLRELQDLEKAHPSLITPDSPTQRVG 69
>gi|260576789|ref|ZP_05844774.1| DNA ligase, NAD-dependent [Rhodobacter sp. SW2]
gi|259021041|gb|EEW24352.1| DNA ligase, NAD-dependent [Rhodobacter sp. SW2]
Length = 705
Score = 94.1 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 49 KKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF 108
K + L++ EA +E + L + Y++ D P TD YD + RL A++ FP+L
Sbjct: 5 KAIEQLTEAEAAVEWQELARAVAQANIDYHQNDAPKLTDATYDAMKRRLAAIEVLFPQLA 64
Query: 109 DEDHPWNTVG 118
D P + VG
Sbjct: 65 T-DSPTSKVG 73
>gi|167563194|ref|ZP_02356110.1| DNA ligase, NAD-dependent [Burkholderia oklahomensis EO147]
Length = 691
Score = 93.8 bits (232), Expect = 6e-18, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 24/62 (38%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ +L YY LD P D YDR+ L ++ + P+L + P
Sbjct: 11 SQPAKRAAWLRAELERANYAYYVLDQPELPDAEYDRLFVELQQVEAEHPDLVTPESPTQR 70
Query: 117 VG 118
VG
Sbjct: 71 VG 72
>gi|163789388|ref|ZP_02183827.1| DNA ligase, NAD-dependent [Carnobacterium sp. AT7]
gi|159875242|gb|EDP69307.1| DNA ligase, NAD-dependent [Carnobacterium sp. AT7]
Length = 673
Score = 93.8 bits (232), Expect = 6e-18, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 31/68 (45%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
+++ A V L + + YY D P D YD++ L AL+E+FP+L
Sbjct: 1 MSTQDFESAKQRVFDLRTLLDKYSYEYYVKDTPSIPDADYDKLYHELVALEEEFPDLISN 60
Query: 111 DHPWNTVG 118
D P VG
Sbjct: 61 DSPTQRVG 68
>gi|302337851|ref|YP_003803057.1| DNA ligase, NAD-dependent [Spirochaeta smaragdinae DSM 11293]
gi|301635036|gb|ADK80463.1| DNA ligase, NAD-dependent [Spirochaeta smaragdinae DSM 11293]
Length = 703
Score = 93.8 bits (232), Expect = 6e-18, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 33/69 (47%)
Query: 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
K +A EV L + + + YY P +D YDR+ RL L+EQ+PEL
Sbjct: 3 DEVQKQKEKATEEVRRLADLLFRYNRAYYIEGKPEVSDTEYDRLFLRLQELEEQWPELKR 62
Query: 110 EDHPWNTVG 118
ED P VG
Sbjct: 63 EDSPTLRVG 71
>gi|149911742|ref|ZP_01900348.1| NAD-dependent DNA ligase [Moritella sp. PE36]
gi|149805167|gb|EDM65187.1| NAD-dependent DNA ligase [Moritella sp. PE36]
Length = 482
Score = 93.8 bits (232), Expect = 6e-18, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
K +A +++ L + YY LDNP D YDR+ L L+ +FPEL P
Sbjct: 2 KEQAK-QIQTLTLQLEEYNHQYYVLDNPTVPDAEYDRLLRELKQLETEFPELALATSPTQ 60
Query: 116 TVG 118
VG
Sbjct: 61 KVG 63
>gi|153217072|ref|ZP_01950836.1| DNA ligase [Vibrio cholerae 1587]
gi|124113902|gb|EAY32722.1| DNA ligase [Vibrio cholerae 1587]
Length = 330
Score = 93.8 bits (232), Expect = 6e-18, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 24/62 (38%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ + L K H YY D P D YDR+ L L+ PEL D P
Sbjct: 2 SDVAQRLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELMSSDSPSLR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|254229733|ref|ZP_04923142.1| DNA ligase [Vibrio sp. Ex25]
gi|151937778|gb|EDN56627.1| DNA ligase [Vibrio sp. Ex25]
Length = 287
Score = 93.8 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 28/62 (45%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ +E L + +H YY DNP D YDR+ L ++ + P+L D P
Sbjct: 23 ESVLQRLEELKESLHYHAVRYYVEDNPEIPDAEYDRLMRELLDIEAENPDLITVDSPSQR 82
Query: 117 VG 118
VG
Sbjct: 83 VG 84
>gi|332992914|gb|AEF02969.1| DNA ligase, NAD-dependent [Alteromonas sp. SN2]
Length = 404
Score = 93.8 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 29/64 (45%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
+ +A E L + YY LD P D YDR + L ++++QFPEL P
Sbjct: 4 TLEQAKARAESLRGQINEYNYQYYVLDAPTVPDAQYDRDMQELISIEKQFPELQSVSSPS 63
Query: 115 NTVG 118
VG
Sbjct: 64 QKVG 67
>gi|289704853|ref|ZP_06501270.1| DNA ligase (NAD(+)) [Micrococcus luteus SK58]
gi|289558349|gb|EFD51623.1| DNA ligase (NAD(+)) [Micrococcus luteus SK58]
Length = 797
Score = 93.8 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 30/71 (42%)
Query: 48 AKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
+ + E E LV+ + YY+ D P +D YD + RL+ L+ PEL
Sbjct: 10 QPDPQDIPAADLRAEYEDLVERVRAARTAYYQRDAPEISDAEYDALYRRLEDLEALHPEL 69
Query: 108 FDEDHPWNTVG 118
D P VG
Sbjct: 70 VSNDSPTQEVG 80
>gi|194016164|ref|ZP_03054779.1| DNA ligase, NAD-dependent [Bacillus pumilus ATCC 7061]
gi|194012519|gb|EDW22086.1| DNA ligase, NAD-dependent [Bacillus pumilus ATCC 7061]
Length = 668
Score = 93.8 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 30/65 (46%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K A +E L +I + Y+ LD P D YD L +L+E+ P+L D P
Sbjct: 1 MDKEAAKRRIEELHQILNQYNYEYHTLDRPSVPDAEYDARMRELISLEEEHPDLKAADSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SQRVG 65
>gi|167570377|ref|ZP_02363251.1| DNA ligase, NAD-dependent [Burkholderia oklahomensis C6786]
Length = 691
Score = 93.8 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 24/62 (38%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ +L YY LD P D YDR+ L ++ + P+L + P
Sbjct: 11 SQPAKRAAWLRAELERANYAYYVLDQPELPDAEYDRLFVELQQVEAEHPDLVTPESPTQR 70
Query: 117 VG 118
VG
Sbjct: 71 VG 72
>gi|254383201|ref|ZP_04998554.1| DNA ligase [Streptomyces sp. Mg1]
gi|194342099|gb|EDX23065.1| DNA ligase [Streptomyces sp. Mg1]
Length = 736
Score = 93.8 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
+ L + H+ YY D P+ +D +D++ L+AL+EQ+P+L D P
Sbjct: 14 PAAVREQHALLAEQVEEHRFRYYVNDQPVVSDAEFDQLLRSLEALEEQYPQLRTPDSPTQ 73
Query: 116 TV 117
V
Sbjct: 74 KV 75
>gi|228469580|ref|ZP_04054573.1| DNA ligase, NAD-dependent [Porphyromonas uenonis 60-3]
gi|228308930|gb|EEK17605.1| DNA ligase, NAD-dependent [Porphyromonas uenonis 60-3]
Length = 679
Score = 93.8 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ +E+E L K H + YY + P +D YD + +RL L+ + PE D P
Sbjct: 1 MTPNSTELEIEQLRKTIEQHNRAYYLDNAPTISDADYDALMQRLLTLEAEHPEFADPTSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SLRVG 65
>gi|325915467|ref|ZP_08177781.1| DNA ligase, NAD-dependent [Xanthomonas vesicatoria ATCC 35937]
gi|325538349|gb|EGD10031.1| DNA ligase, NAD-dependent [Xanthomonas vesicatoria ATCC 35937]
Length = 833
Score = 93.8 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 27/60 (45%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
++ L + Y+ LD P D YDR+ L+AL+ + P L D P VG+
Sbjct: 8 AQRIDALRRRIEDANYRYHVLDEPQMADVDYDRLMRELEALEAEHPALATADSPTQRVGH 67
>gi|332705189|ref|ZP_08425270.1| DNA ligase, NAD-dependent [Lyngbya majuscula 3L]
gi|332355932|gb|EGJ35391.1| DNA ligase, NAD-dependent [Lyngbya majuscula 3L]
Length = 1092
Score = 93.8 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L ++ + YY LDNP+ D +YD++ L L+ ++PEL D P VG
Sbjct: 11 RIQELRRLLQNASYAYYVLDNPIMADAIYDQLYRELQELETEYPELVTSDSPTQRVG 67
>gi|261392961|emb|CAX50546.1| DNA ligase (polydeoxyribonucleotide synthase [NAD+]) [Neisseria
meningitidis 8013]
Length = 841
Score = 93.8 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 36/83 (43%)
Query: 36 PNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSE 95
PN + ++ + K S K A + +L + + YY LD P D YDR+
Sbjct: 3 PNSKHNTNFTNLLKPSDSDIKQFAAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDRLFR 62
Query: 96 RLDALQEQFPELFDEDHPWNTVG 118
L+AL+ PE D P VG
Sbjct: 63 ELEALELNHPEFKLPDSPTQRVG 85
>gi|254440003|ref|ZP_05053497.1| DNA ligase, NAD-dependent [Octadecabacter antarcticus 307]
gi|198255449|gb|EDY79763.1| DNA ligase, NAD-dependent [Octadecabacter antarcticus 307]
Length = 706
Score = 93.8 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 33/74 (44%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
+ + +L+K EA E+ L + Y++ D P D YD + R ++ +F
Sbjct: 1 MSATTSIENLTKDEAAQELARLSALLAQANAEYHQADAPRIPDADYDALKLRNAMIEARF 60
Query: 105 PELFDEDHPWNTVG 118
+L D P TVG
Sbjct: 61 SDLKRRDSPSETVG 74
>gi|110833810|ref|YP_692669.1| NAD-dependent DNA ligase LigA [Alcanivorax borkumensis SK2]
gi|123345666|sp|Q0VR01|DNLJ_ALCBS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|110646921|emb|CAL16397.1| DNA ligase (NAD+) [Alcanivorax borkumensis SK2]
Length = 777
Score = 93.8 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 25/57 (43%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ + L YY D+P D YDRV L L+ Q+P+L D P VG
Sbjct: 10 QAQSLRDQLNDWSYRYYVQDDPAVPDAEYDRVFRALKDLEAQYPDLVTADSPTQRVG 66
>gi|325529285|gb|EGD06234.1| NAD-dependent DNA ligase [Burkholderia sp. TJI49]
Length = 691
Score = 93.8 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 21/58 (36%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+L YY LD P D YDR+ L L+ PE D P VG
Sbjct: 15 ARAAWLRDQLQQANYAYYVLDQPDLPDAEYDRLFAELQQLEADHPEFVTPDSPTQRVG 72
>gi|296123087|ref|YP_003630865.1| DNA ligase, NAD-dependent [Planctomyces limnophilus DSM 3776]
gi|296015427|gb|ADG68666.1| DNA ligase, NAD-dependent [Planctomyces limnophilus DSM 3776]
Length = 707
Score = 93.8 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 48 AKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
A+ + + S +A ++ L + H + YY L +D YDR+ RL ++ FPEL
Sbjct: 12 ARPLPT-SADQARHLLDKLRQEIRRHDRLYYVLAQNEISDLEYDRLMARLLEVEAAFPEL 70
Query: 108 FDEDHPWNTVG 118
D P VG
Sbjct: 71 TTADSPSQKVG 81
>gi|291277000|ref|YP_003516772.1| DNA ligase [Helicobacter mustelae 12198]
gi|290964194|emb|CBG40040.1| DNA ligase [Helicobacter mustelae 12198]
Length = 669
Score = 93.8 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
K+KK TS+ K + +VE L K+A H YY LD+P+ +D YD + + +E PE
Sbjct: 13 KSKKETSMEKEQYEKKVEQLKKMAYH----YYVLDDPISSDEEYDILYHEVKGYEEAHPE 68
Query: 107 LFDEDHPWNTVG 118
ED P VG
Sbjct: 69 AIREDSPTQRVG 80
>gi|254468809|ref|ZP_05082215.1| DNA ligase, NAD-dependent [beta proteobacterium KB13]
gi|207087619|gb|EDZ64902.1| DNA ligase, NAD-dependent [beta proteobacterium KB13]
Length = 669
Score = 93.8 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 30/62 (48%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ + ++ YL + H YY LD+P +D YD + L +++ PEL D P
Sbjct: 3 QDIIKKISYLKSVIQEHDHCYYVLDDPQISDHEYDSLLRELKNIEDSNPELITPDSPTQR 62
Query: 117 VG 118
VG
Sbjct: 63 VG 64
>gi|254820448|ref|ZP_05225449.1| NAD-dependent DNA ligase LigA [Mycobacterium intracellulare ATCC
13950]
Length = 693
Score = 93.4 bits (231), Expect = 8e-18, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 30/61 (49%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E + + L + HQ YY D P+ +D +D + L AL+E+ PEL D P V
Sbjct: 12 EVRRQWQDLAEAVREHQFRYYIKDAPIISDAEFDSMFNELLALEERHPELRVADSPTQLV 71
Query: 118 G 118
G
Sbjct: 72 G 72
>gi|318059490|ref|ZP_07978213.1| NAD-dependent DNA ligase LigA [Streptomyces sp. SA3_actG]
gi|318076490|ref|ZP_07983822.1| NAD-dependent DNA ligase LigA [Streptomyces sp. SA3_actF]
Length = 783
Score = 93.4 bits (231), Expect = 8e-18, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
+ E + + + H+ YY D P+ +D +D + RL AL+E+ P+L D P
Sbjct: 33 PADVREEHDRIAREVDEHRYRYYVNDQPVVSDAQFDELLRRLTALEEEHPQLRTPDSPTQ 92
Query: 116 TV 117
V
Sbjct: 93 KV 94
>gi|187924439|ref|YP_001896081.1| DNA ligase, NAD-dependent [Burkholderia phytofirmans PsJN]
gi|254781278|sp|B2T5K0|DNLJ_BURPP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|187715633|gb|ACD16857.1| DNA ligase, NAD-dependent [Burkholderia phytofirmans PsJN]
Length = 688
Score = 93.4 bits (231), Expect = 8e-18, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 26/59 (44%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+L YY LD P D YD++ + L++++ + P+L D P VG
Sbjct: 15 AERAAWLRAELERANYAYYVLDQPDLPDAEYDKLFKELESIETEHPDLIVPDSPTQRVG 73
>gi|300867541|ref|ZP_07112191.1| DNA ligase [Oscillatoria sp. PCC 6506]
gi|300334429|emb|CBN57361.1| DNA ligase [Oscillatoria sp. PCC 6506]
Length = 690
Score = 93.4 bits (231), Expect = 8e-18, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 28/61 (45%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E V+ L K YY LD P+ D +YDR+ L L+ Q PEL + P V
Sbjct: 4 EVQQRVQQLRKQLQEASYAYYVLDTPIMPDEVYDRLYRELQELETQHPELISLESPTQRV 63
Query: 118 G 118
G
Sbjct: 64 G 64
>gi|289663144|ref|ZP_06484725.1| NAD-dependent DNA ligase LigA [Xanthomonas campestris pv.
vasculorum NCPPB702]
Length = 833
Score = 93.4 bits (231), Expect = 8e-18, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
++ L Y+ LD P D YDR+ L+AL+ ++P+L D P VG+
Sbjct: 8 AQRIDALRSRIEDANYRYHVLDEPQMADVDYDRLMRELEALEAEYPQLASADSPTQRVGH 67
>gi|77919807|ref|YP_357622.1| DNA ligase, NAD-dependent [Pelobacter carbinolicus DSM 2380]
gi|123756590|sp|Q3A2F5|DNLJ_PELCD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|77545890|gb|ABA89452.1| DNA ligase, NAD-dependent [Pelobacter carbinolicus DSM 2380]
Length = 671
Score = 93.4 bits (231), Expect = 8e-18, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 29/65 (44%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K + + + L H + YY D P TD YDR+ L L++ +PEL P
Sbjct: 1 MDKAQRIRRYQQLCDELHRHSRLYYTYDRPEITDAEYDRLFRELLELEKAYPELVTAASP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SLRVG 65
>gi|311694426|gb|ADP97299.1| NAD-dependent DNA ligase [marine bacterium HP15]
Length = 678
Score = 93.4 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 54 LSKG--EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
+SK + + VE L H YY LD+P D YDR+ L L+ +PEL +
Sbjct: 1 MSKATPDIIQRVEELRSAIDDHNYRYYVLDDPRVPDAEYDRLFRELQGLETDYPELASDT 60
Query: 112 HPWNTVG 118
P VG
Sbjct: 61 SPTRRVG 67
>gi|255264005|ref|ZP_05343347.1| DNA ligase, NAD-dependent [Thalassiobium sp. R2A62]
gi|255106340|gb|EET49014.1| DNA ligase, NAD-dependent [Thalassiobium sp. R2A62]
Length = 711
Score = 93.4 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 33/72 (45%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
V L++ A E+ +L + Y+ D P +D YD + R A++ +FP+
Sbjct: 11 SQIDVDDLTRTAATDELTWLSYVLGQANDDYHGSDAPQMSDAEYDALKRRNMAIEARFPD 70
Query: 107 LFDEDHPWNTVG 118
L D P + VG
Sbjct: 71 LKRGDSPSDQVG 82
>gi|115352108|ref|YP_773947.1| DNA ligase [Burkholderia ambifaria AMMD]
gi|122322835|sp|Q0BE10|DNLJ_BURCM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|115282096|gb|ABI87613.1| DNA ligase, NAD-dependent [Burkholderia ambifaria AMMD]
Length = 691
Score = 93.4 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 22/58 (37%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+L YY LD P D YDR+ L L+ P+L D P VG
Sbjct: 15 ARAAWLRDQLERANYAYYVLDQPDLPDAEYDRLFGELQQLETDHPDLVTPDSPTQRVG 72
>gi|327475239|gb|AEA77214.1| DNA ligase [Bacillus sp. 15.4]
Length = 668
Score = 93.4 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 30/65 (46%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ A +V L + + Y+ LD P D YDRV L A++ +FPEL D P
Sbjct: 1 MDIKSAEQKVAELHNLLNQYNYEYHVLDKPSVPDAEYDRVMNELIAIENKFPELRTADSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|298245037|ref|ZP_06968843.1| DNA ligase, NAD-dependent [Ktedonobacter racemifer DSM 44963]
gi|297552518|gb|EFH86383.1| DNA ligase, NAD-dependent [Ktedonobacter racemifer DSM 44963]
Length = 700
Score = 93.4 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 26/66 (39%)
Query: 53 SLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDH 112
+ V L Y+ LDNP +D YD++ L ++ + PEL +
Sbjct: 26 QTEEERLAKRVAELRHQIEEANYQYHVLDNPTLSDAEYDQLMIELQRIEGEHPELVTPES 85
Query: 113 PWNTVG 118
P VG
Sbjct: 86 PTQRVG 91
>gi|288572809|ref|ZP_06391166.1| DNA ligase, NAD-dependent [Dethiosulfovibrio peptidovorans DSM
11002]
gi|288568550|gb|EFC90107.1| DNA ligase, NAD-dependent [Dethiosulfovibrio peptidovorans DSM
11002]
Length = 674
Score = 93.4 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 30/65 (46%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + + E L K H + YY LD+P D YDR+ L L+ + P L +D P
Sbjct: 1 MVSRDILRRYESLKKEIARHDRLYYVLDSPEIDDSSYDRMMRELLELEREHPTLVSDDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SRRVG 65
>gi|212634787|ref|YP_002311312.1| NAD-dependent DNA ligase [Shewanella piezotolerans WP3]
gi|254781417|sp|B8CN91|DNLJ_SHEPW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|212556271|gb|ACJ28725.1| NAD-dependent DNA ligase [Shewanella piezotolerans WP3]
Length = 668
Score = 93.4 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 28/59 (47%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+E+ L + H YY DNP D YDR+ +RL L+ Q PE D P VG
Sbjct: 5 ELEILELTQQLNLHNYHYYVDDNPTIPDVEYDRLLKRLIELETQSPEFAKADSPTQRVG 63
>gi|172060972|ref|YP_001808624.1| DNA ligase, NAD-dependent [Burkholderia ambifaria MC40-6]
gi|254781273|sp|B1YSH2|DNLJ_BURA4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|171993489|gb|ACB64408.1| DNA ligase, NAD-dependent [Burkholderia ambifaria MC40-6]
Length = 691
Score = 93.4 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 22/58 (37%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+L YY LD P D YDR+ L L+ P+L D P VG
Sbjct: 15 ARAAWLRDQLERANYAYYVLDQPDLPDAEYDRLFGELQQLETDHPDLVTPDSPTQRVG 72
>gi|319937197|ref|ZP_08011604.1| DNA ligase [Coprobacillus sp. 29_1]
gi|319807563|gb|EFW04156.1| DNA ligase [Coprobacillus sp. 29_1]
Length = 662
Score = 93.4 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 29/58 (50%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ + K+ + YY LDNP +D YDR+ + L A++ Q PE D P VG
Sbjct: 4 ERLIEIKKLLNEYNYQYYVLDNPSVSDQEYDRLMQELQAIENQHPEWLTADSPSQRVG 61
>gi|299067453|emb|CBJ38652.1| DNA ligase [Ralstonia solanacearum CMR15]
Length = 813
Score = 93.4 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 24/59 (40%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L + YY LD P D YDR+ L+AL+ PEL D P VG
Sbjct: 14 ETRAAALRATLNRYAHEYYVLDQPSVPDAEYDRLYRELEALEADHPELRTPDSPTLRVG 72
>gi|251788438|ref|YP_003003159.1| NAD-dependent DNA ligase LigA [Dickeya zeae Ech1591]
gi|247537059|gb|ACT05680.1| DNA ligase, NAD-dependent [Dickeya zeae Ech1591]
Length = 682
Score = 93.4 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 26/60 (43%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
A ++ L + HH Y+ D+P D YD + L L+ Q P L D P VG
Sbjct: 14 ARRRIKELRILIRHHDIKYHSEDDPEILDSEYDLLKRELSELEIQHPFLVTSDSPTQRVG 73
>gi|120602092|ref|YP_966492.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris DP4]
gi|166215378|sp|A1VC99|DNLJ1_DESVV RecName: Full=DNA ligase 1; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] 1
gi|120562321|gb|ABM28065.1| DNA ligase, NAD-dependent [Desulfovibrio vulgaris DP4]
Length = 680
Score = 93.4 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 26/61 (42%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+ +L H + YY LD P +D YD + L L+ +P L DE P V
Sbjct: 6 QHQSRAAWLRAELARHNRLYYELDTPEISDAEYDTLYRELVNLETLWPALMDEASPTQRV 65
Query: 118 G 118
G
Sbjct: 66 G 66
>gi|170703080|ref|ZP_02893902.1| DNA ligase, NAD-dependent [Burkholderia ambifaria IOP40-10]
gi|170132009|gb|EDT00515.1| DNA ligase, NAD-dependent [Burkholderia ambifaria IOP40-10]
Length = 691
Score = 93.4 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 22/58 (37%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+L YY LD P D YDR+ L L+ P+L D P VG
Sbjct: 15 ARAAWLRDQLERANYAYYVLDQPDLPDAEYDRLFGELQQLETDHPDLVTPDSPTQRVG 72
>gi|120611505|ref|YP_971183.1| DNA ligase [Acidovorax citrulli AAC00-1]
gi|166215380|sp|A1TR21|DNLJ_ACIAC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|120589969|gb|ABM33409.1| DNA ligase, NAD-dependent [Acidovorax citrulli AAC00-1]
Length = 732
Score = 93.4 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 22/56 (39%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
L YY LD P D YDRV + L AL+ PEL D P V
Sbjct: 22 RAAALRAQLHQWAHQYYVLDAPTVPDAEYDRVFQALQALETAHPELVTPDSPTQRV 77
>gi|295702476|ref|YP_003595551.1| DNA ligase, NAD-dependent [Bacillus megaterium DSM 319]
gi|294800135|gb|ADF37201.1| DNA ligase, NAD-dependent [Bacillus megaterium DSM 319]
Length = 668
Score = 93.4 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 29/65 (44%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ A V+ L + + YY LD P D YD++ L +++ FPEL D P
Sbjct: 1 MEFETAKSRVQELRDLLNQYGYEYYVLDQPSVPDAEYDKLMNELIEIEDSFPELKTADSP 60
Query: 114 WNTVG 118
+G
Sbjct: 61 TQRIG 65
>gi|282861257|ref|ZP_06270322.1| DNA ligase, NAD-dependent [Streptomyces sp. ACTE]
gi|282563915|gb|EFB69452.1| DNA ligase, NAD-dependent [Streptomyces sp. ACTE]
Length = 732
Score = 93.4 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 30/61 (49%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
EA L + H+ YY D P+ +D +DR+ L+A++++ P+L D P
Sbjct: 15 AEARERHALLSEQIEEHRFRYYVKDQPVVSDAEFDRLMRELEAVEDENPQLRTPDSPTQK 74
Query: 117 V 117
V
Sbjct: 75 V 75
>gi|166364069|ref|YP_001656342.1| DNA ligase [Microcystis aeruginosa NIES-843]
gi|254781371|sp|B0JTW2|DNLJ_MICAN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|166086442|dbj|BAG01150.1| DNA ligase [Microcystis aeruginosa NIES-843]
Length = 669
Score = 93.4 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 29/61 (47%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E + L YY LD+P D +YD++ L+ +++++P+L D P V
Sbjct: 6 EIQQRCQQLKTELQRASYAYYVLDDPFIPDSVYDQLYRELEDIEKRYPQLITPDSPTQRV 65
Query: 118 G 118
G
Sbjct: 66 G 66
>gi|333024269|ref|ZP_08452333.1| putative NAD-dependent DNA ligase LigA [Streptomyces sp. Tu6071]
gi|332744121|gb|EGJ74562.1| putative NAD-dependent DNA ligase LigA [Streptomyces sp. Tu6071]
Length = 771
Score = 93.4 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
+ E + + + H+ YY D P+ +D +D + RL AL+E+ P+L D P
Sbjct: 33 PADVREEHDRIAREVDEHRYRYYVNDQPVVSDAQFDELLRRLTALEEEHPQLRTPDSPTQ 92
Query: 116 TV 117
V
Sbjct: 93 KV 94
>gi|284042834|ref|YP_003393174.1| DNA ligase, NAD-dependent [Conexibacter woesei DSM 14684]
gi|283947055|gb|ADB49799.1| DNA ligase, NAD-dependent [Conexibacter woesei DSM 14684]
Length = 684
Score = 93.4 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 29/65 (44%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+S G L + +H YY LD+P D YD + + L AL+ PEL D P
Sbjct: 1 MSAGPDAQRAAVLRRELAYHGHRYYDLDDPEIGDDAYDALLDELRALEAAHPELLTPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|119512036|ref|ZP_01631131.1| DNA ligase [Nodularia spumigena CCY9414]
gi|119463326|gb|EAW44268.1| DNA ligase [Nodularia spumigena CCY9414]
Length = 678
Score = 93.4 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ VE L ++ YY LD P+ D +YD++ L L+ ++PE D P VG
Sbjct: 8 VKRVEELRQLLQQASYAYYVLDAPMMEDAVYDQLYRELQELEIKYPEFITPDSPTQRVG 66
>gi|157691416|ref|YP_001485878.1| NAD-dependent DNA ligase LigA [Bacillus pumilus SAFR-032]
gi|190359234|sp|A8FAQ1|DNLJ_BACP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|157680174|gb|ABV61318.1| DNA ligase (NAD(+)) [Bacillus pumilus SAFR-032]
Length = 668
Score = 93.4 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 30/65 (46%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K A +E L +I + Y+ LD P D YD L +L+E+ P+L D P
Sbjct: 1 MDKEAAKRRIEELHEILNQYNYEYHTLDRPSVPDAEYDARMRELISLEEEHPDLKAADSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SQRVG 65
>gi|84498237|ref|ZP_00997034.1| DNA ligase [Janibacter sp. HTCC2649]
gi|84381737|gb|EAP97620.1| DNA ligase [Janibacter sp. HTCC2649]
Length = 731
Score = 93.4 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 28 LTLEAKFLPNKRALESWLDKAK-KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFT 86
+TL A + + RA+ ++ V + E E L + A HQ Y+ D+P +
Sbjct: 1 MTLGATNIISVRAVRQDERVSENDVVAEVPDEIRHEWTDLAEQATTHQFAYHVKDSPTVS 60
Query: 87 DGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
DG YD++ +RL+ L++++P L + P +VG
Sbjct: 61 DGEYDKLMKRLNMLEDEYPSLRTPESPTQSVG 92
>gi|227432449|ref|ZP_03914436.1| NAD-dependent DNA ligase [Leuconostoc mesenteroides subsp. cremoris
ATCC 19254]
gi|227351770|gb|EEJ42009.1| NAD-dependent DNA ligase [Leuconostoc mesenteroides subsp. cremoris
ATCC 19254]
Length = 680
Score = 93.4 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 35/74 (47%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
L + L+ +A E L K + + YY D PL D +YD + RL AL+E+F
Sbjct: 2 LPDFTPIEKLTTQDAQQETARLQKQLVQYGTAYYEDDAPLVEDYIYDALYARLVALEEKF 61
Query: 105 PELFDEDHPWNTVG 118
P+ D P VG
Sbjct: 62 PQYVIPDSPTQNVG 75
>gi|309812136|ref|ZP_07705894.1| DNA ligase (NAD+) [Dermacoccus sp. Ellin185]
gi|308433823|gb|EFP57697.1| DNA ligase (NAD+) [Dermacoccus sp. Ellin185]
Length = 770
Score = 93.4 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L + HQ YY D P +DG YD + L ++E +PEL + P VG
Sbjct: 28 RAAELTEQIDGHQFAYYVKDAPTISDGEYDELLRELQGVEESYPELRSPESPTQRVG 84
>gi|86157121|ref|YP_463906.1| DNA ligase, NAD-dependent [Anaeromyxobacter dehalogenans 2CP-C]
gi|123723230|sp|Q2INT9|DNLJ_ANADE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|85773632|gb|ABC80469.1| DNA ligase, NAD-dependent [Anaeromyxobacter dehalogenans 2CP-C]
Length = 687
Score = 93.4 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 24/52 (46%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
L + YY LD P+ D YDR+ L A++ + PEL D P V
Sbjct: 13 LRERIRAADHAYYVLDQPVLADAEYDRLMHELQAIEAEHPELVTADSPTQRV 64
>gi|121594439|ref|YP_986335.1| DNA ligase [Acidovorax sp. JS42]
gi|166215384|sp|A1W7N4|DNLJ_ACISJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|120606519|gb|ABM42259.1| DNA ligase, NAD-dependent [Acidovorax sp. JS42]
Length = 731
Score = 93.4 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 26/59 (44%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+++ L + YY D P D YDR ++L AL+ +P+L D P V
Sbjct: 19 VATKIKALREQLNRWAHEYYVQDTPSVPDAEYDRAFQQLQALEGAYPDLVTPDSPTQRV 77
>gi|116617684|ref|YP_818055.1| NAD-dependent DNA ligase [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
gi|122272115|sp|Q03YP0|DNLJ_LEUMM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|116096531|gb|ABJ61682.1| NAD-dependent DNA ligase [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
Length = 680
Score = 93.4 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 35/74 (47%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
L + L+ +A E L K + + YY D PL D +YD + RL AL+E+F
Sbjct: 2 LPDFTPIEKLTTQDAQQETARLQKQLVQYGTAYYEDDAPLVEDYIYDALYARLVALEEKF 61
Query: 105 PELFDEDHPWNTVG 118
P+ D P VG
Sbjct: 62 PQYVIPDSPTQNVG 75
>gi|145298235|ref|YP_001141076.1| NAD-dependent DNA ligase [Aeromonas salmonicida subsp. salmonicida
A449]
gi|166215387|sp|A4SKA6|DNLJ_AERS4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|142851007|gb|ABO89328.1| NAD-dependent DNA ligase [Aeromonas salmonicida subsp. salmonicida
A449]
Length = 664
Score = 93.4 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
E + L + + YY LDNP D YDR+ L A++ + PEL P
Sbjct: 2 SETLSRHRQLCDLLTEYGHQYYVLDNPTVPDAEYDRLMRELIAIESEHPELKTSASPSVR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|325288902|ref|YP_004265083.1| DNA ligase [Syntrophobotulus glycolicus DSM 8271]
gi|324964303|gb|ADY55082.1| DNA ligase [Syntrophobotulus glycolicus DSM 8271]
Length = 671
Score = 93.4 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 24/62 (38%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
G+ + L YY LD+P TD YD + L ++ PE D P
Sbjct: 9 GQGPERLNQLKTQIEEADYRYYVLDDPQITDKEYDLLMRELVEIEGAHPEWVSPDSPSQR 68
Query: 117 VG 118
VG
Sbjct: 69 VG 70
>gi|260911472|ref|ZP_05918061.1| DNA ligase [Prevotella sp. oral taxon 472 str. F0295]
gi|260634401|gb|EEX52502.1| DNA ligase [Prevotella sp. oral taxon 472 str. F0295]
Length = 666
Score = 93.4 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 30/61 (49%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E + +E L HH YY ++P +D +D + L L+ + PE++D + P V
Sbjct: 2 EDIKRIEELRNQLHHHNYLYYVQNSPTLSDQEFDHLMRELQDLEAKHPEVYDPNSPTQRV 61
Query: 118 G 118
G
Sbjct: 62 G 62
>gi|75906538|ref|YP_320834.1| NAD-dependent DNA ligase LigA [Anabaena variabilis ATCC 29413]
gi|123745307|sp|Q3MGE7|DNLJ_ANAVT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|75700263|gb|ABA19939.1| NAD-dependent DNA ligase [Anabaena variabilis ATCC 29413]
Length = 676
Score = 93.4 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ VE L ++ YY LD P+ D +YD++ L L+ Q PEL D P +G
Sbjct: 8 VKRVEELRRLLQQASYAYYVLDAPVMEDAVYDQLYRELQQLEIQHPELVTPDSPTQRIG 66
>gi|253996456|ref|YP_003048520.1| DNA ligase, NAD-dependent [Methylotenera mobilis JLW8]
gi|253983135|gb|ACT47993.1| DNA ligase, NAD-dependent [Methylotenera mobilis JLW8]
Length = 677
Score = 93.0 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 28/67 (41%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
+ L A + V L + + YY LD P D YD++ L L++ +P L
Sbjct: 1 MPDLKLSSAELRVLELRGLIARYDYEYYVLDAPSVPDSEYDKIYRELQTLEQAYPSLVVA 60
Query: 111 DHPWNTV 117
D P V
Sbjct: 61 DSPTQRV 67
>gi|94676849|ref|YP_588544.1| DNA ligase, NAD-dependent [Baumannia cicadellinicola str. Hc
(Homalodisca coagulata)]
gi|123260587|sp|Q1LU20|DNLJ_BAUCH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|94219999|gb|ABF14158.1| DNA ligase, NAD-dependent [Baumannia cicadellinicola str. Hc
(Homalodisca coagulata)]
Length = 671
Score = 93.0 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 29/63 (46%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ +E L + + YY D P +D YD + +L L+ Q+P+L D P
Sbjct: 2 KQIEQYIEQLRQQLRYWNFLYYAKDAPEVSDVEYDWLMMKLRELERQWPDLKTADSPTQH 61
Query: 117 VGY 119
+GY
Sbjct: 62 IGY 64
>gi|158334366|ref|YP_001515538.1| NAD-dependent DNA ligase LigA [Acaryochloris marina MBIC11017]
gi|190359221|sp|B0C308|DNLJ_ACAM1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|158304607|gb|ABW26224.1| DNA ligase, NAD-dependent [Acaryochloris marina MBIC11017]
Length = 675
Score = 93.0 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
V+ L ++ YY LD PL D +YD++ L L+ Q+P+L D P VG
Sbjct: 9 QARVQELRQLLQKASYAYYGLDAPLMEDAVYDQLYHELVDLEAQYPQLITPDSPTQRVG 67
>gi|329115587|ref|ZP_08244309.1| DNA ligase [Acetobacter pomorum DM001]
gi|326695015|gb|EGE46734.1| DNA ligase [Acetobacter pomorum DM001]
Length = 710
Score = 93.0 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 33/67 (49%)
Query: 52 TSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
+++ +A E+E+L HH YYR D P +D YD + R DA+ Q P+ E+
Sbjct: 24 ATMTLQQAREELEHLAAEIAHHNAAYYRNDAPEISDAEYDALRRRYDAIVAQHPQAEPEN 83
Query: 112 HPWNTVG 118
VG
Sbjct: 84 SAAQAVG 90
>gi|326381521|ref|ZP_08203215.1| NAD-dependent DNA ligase LigA [Gordonia neofelifaecis NRRL B-59395]
gi|326199768|gb|EGD56948.1| NAD-dependent DNA ligase LigA [Gordonia neofelifaecis NRRL B-59395]
Length = 692
Score = 93.0 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 30/59 (50%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E L + HQ YY D P+ +DG +D + RL AL+++ PEL D P VG
Sbjct: 12 AREWALLAEEVRGHQFRYYVQDAPVISDGEFDTLLRRLQALEDEHPELAVADSPTKLVG 70
>gi|311113170|ref|YP_003984392.1| NAD-dependent DNA ligase LigA [Rothia dentocariosa ATCC 17931]
gi|310944664|gb|ADP40958.1| NAD-dependent DNA ligase LigA [Rothia dentocariosa ATCC 17931]
Length = 740
Score = 93.0 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 42 ESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQ 101
LD + ++T + E L + YY+ D P +D YDR+ RL+ ++
Sbjct: 16 LKALDSSAELTDTIRAEYA----ELTDTIRTARHDYYQEDAPTLSDAEYDRLYRRLEQIE 71
Query: 102 EQFPELFDEDHPWNTVG 118
Q+P L D P VG
Sbjct: 72 AQYPALIANDSPTQEVG 88
>gi|325143946|gb|EGC66256.1| DNA ligase, NAD-dependent [Neisseria meningitidis M01-240013]
gi|325206489|gb|ADZ01942.1| DNA ligase, NAD-dependent [Neisseria meningitidis M04-240196]
Length = 841
Score = 93.0 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 36/83 (43%)
Query: 36 PNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSE 95
PN + ++ + K S K A + +L + + YY LD P D YD++
Sbjct: 3 PNSKHNTNFTNLLKPSDSDIKQFAAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFR 62
Query: 96 RLDALQEQFPELFDEDHPWNTVG 118
L+AL+ PE D P VG
Sbjct: 63 ELEALELNHPEFKLPDSPTQRVG 85
>gi|209695779|ref|YP_002263709.1| NAD-dependent DNA ligase LigA [Aliivibrio salmonicida LFI1238]
gi|254781250|sp|B6EJQ6|DNLJ_ALISL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|208009732|emb|CAQ80037.1| NAD-dependent DNA ligase [Aliivibrio salmonicida LFI1238]
Length = 669
Score = 93.0 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 29/56 (51%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L K +H YY D+P D YDR+ ++L ++++ PE D P VG
Sbjct: 7 LDELKKQLNYHAYRYYVEDSPELPDAEYDRMMQQLLLIEKEHPEFMTVDSPSQRVG 62
>gi|213850350|ref|ZP_03381248.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Typhi str. M223]
Length = 110
Score = 93.0 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 27/60 (45%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L HH+ Y+ +D P D YDR+ L L+ Q P+L D P VG
Sbjct: 4 IEQQLTELRTTLRHHEYLYHVMDAPEILDAEYDRLMRELRELEAQRPDLITPDSPTQRVG 63
>gi|219667570|ref|YP_002458005.1| DNA ligase, NAD-dependent [Desulfitobacterium hafniense DCB-2]
gi|254781313|sp|B8FP44|DNLJ_DESHD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|219537830|gb|ACL19569.1| DNA ligase, NAD-dependent [Desulfitobacterium hafniense DCB-2]
Length = 659
Score = 93.0 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ +E L + YY LD P +D YD + + L L+++ PE D P
Sbjct: 2 SDVSQRIEALREQIEEANYQYYGLDQPTLSDAEYDALLQELIRLEKEHPEFLTPDSPSQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|304392246|ref|ZP_07374188.1| DNA ligase, NAD-dependent [Ahrensia sp. R2A130]
gi|303296475|gb|EFL90833.1| DNA ligase, NAD-dependent [Ahrensia sp. R2A130]
Length = 716
Score = 93.0 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 35/66 (53%)
Query: 53 SLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDH 112
L+ +A E+ L H Y+ D P +DG YD + +R A++E+FP+L ED
Sbjct: 13 KLTDEQAAEELAALASEIAEHDARYHNDDAPTISDGAYDTLRKRNTAIEERFPDLVREDS 72
Query: 113 PWNTVG 118
P N VG
Sbjct: 73 PSNNVG 78
>gi|260363295|ref|ZP_05776162.1| DNA ligase (NAD+) [Vibrio parahaemolyticus K5030]
gi|308113593|gb|EFO51133.1| DNA ligase (NAD+) [Vibrio parahaemolyticus K5030]
Length = 655
Score = 93.0 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 23/49 (46%)
Query: 70 ALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+H YY DNP D YDR+ L ++ Q P+L D P VG
Sbjct: 1 MHYHAVRYYVEDNPEIPDAEYDRLMRELLEIEAQHPDLVTVDSPSQRVG 49
>gi|89896634|ref|YP_520121.1| hypothetical protein DSY3888 [Desulfitobacterium hafniense Y51]
gi|122997178|sp|Q24QL5|DNLJ_DESHY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|89336082|dbj|BAE85677.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 659
Score = 93.0 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 26/57 (45%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+E L + YY LD P +D YD + + L L+++ PE D P VG
Sbjct: 7 RIEALREQIEEANYQYYGLDQPTLSDAEYDALLQELIRLEKEHPEFLTPDSPSQRVG 63
>gi|239917127|ref|YP_002956685.1| DNA ligase, NAD-dependent [Micrococcus luteus NCTC 2665]
gi|239838334|gb|ACS30131.1| DNA ligase, NAD-dependent [Micrococcus luteus NCTC 2665]
Length = 797
Score = 93.0 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 30/71 (42%)
Query: 48 AKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
+ + E E LV+ + YY+ D P +D YD + RL+ L+ PEL
Sbjct: 10 QPDPQDIPAADLREEYEDLVERVRAARTAYYQRDAPEISDAEYDALYRRLEDLEALHPEL 69
Query: 108 FDEDHPWNTVG 118
D P VG
Sbjct: 70 VSNDSPTQEVG 80
>gi|332653279|ref|ZP_08419024.1| DNA ligase, NAD-dependent [Ruminococcaceae bacterium D16]
gi|332518425|gb|EGJ48028.1| DNA ligase, NAD-dependent [Ruminococcaceae bacterium D16]
Length = 657
Score = 93.0 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 25/59 (42%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E+ L K YY D+P +D YD RL+ L+ PEL D P VG
Sbjct: 4 AQEILELRKELNQANFEYYVKDDPTMSDYDYDHKLRRLEELEGAHPELITPDSPTQRVG 62
>gi|153831338|ref|ZP_01984005.1| DNA ligase [Vibrio cholerae 623-39]
gi|148873180|gb|EDL71315.1| DNA ligase [Vibrio cholerae 623-39]
Length = 159
Score = 93.0 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 24/62 (38%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ + L K H YY D P D YDR+ L L+ PEL D P
Sbjct: 2 SDVAQRLTELRKTLHEHGVRYYVEDAPTIPDAEYDRLMRELLELEAAHPELMSSDSPSLR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|327475235|gb|AEA77212.1| DNA ligase [Exiguobacterium sp. EPVM]
Length = 664
Score = 93.0 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 27/61 (44%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E VE + + + YY LD P D YDR+ L ++ +PEL D P V
Sbjct: 2 EMAERVEAIRQKLNQYGYEYYVLDRPSVPDAEYDRLMNELIEIETDYPELRSPDSPTQRV 61
Query: 118 G 118
G
Sbjct: 62 G 62
>gi|56751245|ref|YP_171946.1| NAD-dependent DNA ligase LigA [Synechococcus elongatus PCC 6301]
gi|81299088|ref|YP_399296.1| NAD-dependent DNA ligase LigA [Synechococcus elongatus PCC 7942]
gi|81596046|sp|Q5N2P4|DNLJ_SYNP6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|123728245|sp|Q31RL0|DNLJ_SYNE7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|56686204|dbj|BAD79426.1| DNA ligase [Synechococcus elongatus PCC 6301]
gi|81167969|gb|ABB56309.1| DNA ligase, NAD-dependent [Synechococcus elongatus PCC 7942]
Length = 679
Score = 93.0 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 27/64 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
+ L ++ YY LD P+ D +YDR+ L L++Q P L D P
Sbjct: 9 TTTAIAQRASELRQLLQQASYAYYVLDQPVMEDAVYDRLYRELQDLEQQHPSLITPDSPT 68
Query: 115 NTVG 118
VG
Sbjct: 69 QRVG 72
>gi|81611354|sp|Q6A7A2|DNLJ_PROAC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|50840696|gb|AAT83363.1| DNA ligase [Propionibacterium acnes KPA171202]
Length = 772
Score = 92.6 bits (229), Expect = 1e-17, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 45 LDKAKKVTSLSKGEAMIE----VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDAL 100
+D + + L EA E L + L Q YY D P +D YDR+ L +
Sbjct: 34 VDDSTQGGELEASEAGAEARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKV 93
Query: 101 QEQFPELFDEDHPWNTVG 118
++ PEL D P VG
Sbjct: 94 EDDHPELRTPDSPTQRVG 111
>gi|119386790|ref|YP_917845.1| DNA ligase, NAD-dependent [Paracoccus denitrificans PD1222]
gi|166216224|sp|A1B9F5|DNLJ_PARDP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|119377385|gb|ABL72149.1| DNA ligase, NAD-dependent [Paracoccus denitrificans PD1222]
Length = 765
Score = 92.6 bits (229), Expect = 1e-17, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 29/70 (41%)
Query: 49 KKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF 108
V+ L A E L + YY+ D P +D YD RL+ ++ +FP+L
Sbjct: 23 PPVSGLDVKAAEAEHARLSEEVAQANLAYYQEDAPFISDAEYDASKRRLEEIEARFPDLA 82
Query: 109 DEDHPWNTVG 118
P VG
Sbjct: 83 HSGSPTAQVG 92
>gi|319762938|ref|YP_004126875.1| DNA ligase, nad-dependent [Alicycliphilus denitrificans BC]
gi|330825018|ref|YP_004388321.1| DNA ligase [Alicycliphilus denitrificans K601]
gi|317117499|gb|ADU99987.1| DNA ligase, NAD-dependent [Alicycliphilus denitrificans BC]
gi|329310390|gb|AEB84805.1| DNA ligase, NAD-dependent [Alicycliphilus denitrificans K601]
Length = 717
Score = 92.6 bits (229), Expect = 1e-17, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 26/59 (44%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+VE L YY LD P D YDRV ++L AL+ +P L D P V
Sbjct: 19 VASKVEALRAQLNQWAHEYYVLDEPSVPDAEYDRVFQQLQALEGAYPALVTPDSPTQRV 77
>gi|289428790|ref|ZP_06430473.1| DNA ligase (NAD(+)) [Propionibacterium acnes J165]
gi|289158188|gb|EFD06408.1| DNA ligase (NAD(+)) [Propionibacterium acnes J165]
Length = 753
Score = 92.6 bits (229), Expect = 1e-17, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 45 LDKAKKVTSLSKGEAMIE----VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDAL 100
+D + + L EA E L + L Q YY D P +D YDR+ L +
Sbjct: 15 VDDSTQGGELEASEAGAEARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKV 74
Query: 101 QEQFPELFDEDHPWNTVG 118
++ PEL D P VG
Sbjct: 75 EDDHPELRTPDSPTQRVG 92
>gi|149192011|ref|ZP_01870239.1| NAD-dependent DNA ligase LigA [Vibrio shilonii AK1]
gi|148834147|gb|EDL51156.1| NAD-dependent DNA ligase LigA [Vibrio shilonii AK1]
Length = 667
Score = 92.6 bits (229), Expect = 1e-17, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 28/60 (46%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ + L + +H YY D+P D YDR+ + L A++ + P+ D P VG
Sbjct: 2 SQQRLNELKEQLHYHGVKYYVEDSPEIPDVEYDRLMQELLAIEAEHPDWVTVDSPSQRVG 61
>gi|149928191|ref|ZP_01916436.1| DNA ligase (NAD+) [Limnobacter sp. MED105]
gi|149823082|gb|EDM82322.1| DNA ligase (NAD+) [Limnobacter sp. MED105]
Length = 597
Score = 92.6 bits (229), Expect = 1e-17, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 25/56 (44%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L+ + + YY LD P D YD+V L ++ PEL D P VG
Sbjct: 27 MRRLIDLLNRWEYAYYVLDAPEVPDSEYDKVYRSLQQIENNHPELIQNDSPTQRVG 82
>gi|325133819|gb|EGC56475.1| DNA ligase, NAD-dependent [Neisseria meningitidis M13399]
Length = 841
Score = 92.6 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 36/83 (43%)
Query: 36 PNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSE 95
PN + ++ + K S K A + +L + + YY LD P D YD++
Sbjct: 3 PNSKHNTNFTNLLKPSDSDIKQFAAQHIRHLTDLLNRYAYEYYTLDAPSVPDAEYDKLFR 62
Query: 96 RLDALQEQFPELFDEDHPWNTVG 118
L+AL+ PE D P VG
Sbjct: 63 ELEALELNHPEFKLPDSPTQRVG 85
>gi|320008426|gb|ADW03276.1| DNA ligase, NAD-dependent [Streptomyces flavogriseus ATCC 33331]
Length = 731
Score = 92.6 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 26/62 (41%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
E L + H+ YY D P+ D +DR L+A++ + PEL D P
Sbjct: 14 PAEVRERHALLAEQIEEHRFRYYVKDQPVVDDAEFDRQMRALEAIEHEHPELRTPDSPTQ 73
Query: 116 TV 117
V
Sbjct: 74 KV 75
>gi|289426325|ref|ZP_06428068.1| DNA ligase (NAD(+)) [Propionibacterium acnes SK187]
gi|295131143|ref|YP_003581806.1| DNA ligase (NAD(+)) [Propionibacterium acnes SK137]
gi|289153053|gb|EFD01771.1| DNA ligase (NAD(+)) [Propionibacterium acnes SK187]
gi|291375741|gb|ADD99595.1| DNA ligase (NAD(+)) [Propionibacterium acnes SK137]
gi|332676019|gb|AEE72835.1| DNA ligase [Propionibacterium acnes 266]
Length = 753
Score = 92.6 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 45 LDKAKKVTSLSKGEAMIE----VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDAL 100
+D + + L EA E L + L Q YY D P +D YDR+ L +
Sbjct: 15 VDDSTQGGELEASEAGAEARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKV 74
Query: 101 QEQFPELFDEDHPWNTVG 118
++ PEL D P VG
Sbjct: 75 EDDHPELRTPDSPTQRVG 92
>gi|117618613|ref|YP_855770.1| DNA ligase, NAD-dependent [Aeromonas hydrophila subsp. hydrophila
ATCC 7966]
gi|166215386|sp|A0KHL9|DNLJ_AERHH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|117560020|gb|ABK36968.1| DNA ligase, NAD-dependent [Aeromonas hydrophila subsp. hydrophila
ATCC 7966]
Length = 668
Score = 92.6 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 28/62 (45%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ + L ++ + + YY LDNP D YDR+ L L+ + PEL P
Sbjct: 2 SDILSRHRQLCELLIEYGHQYYVLDNPTVPDAEYDRLMRELIVLEAEHPELKTPASPSVR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|220906114|ref|YP_002481425.1| NAD-dependent DNA ligase LigA [Cyanothece sp. PCC 7425]
gi|254781305|sp|B8HV17|DNLJ_CYAP4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|219862725|gb|ACL43064.1| DNA ligase, NAD-dependent [Cyanothece sp. PCC 7425]
Length = 738
Score = 92.6 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 29/61 (47%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E V L ++ YY LD P+ D +YD++ L L+ Q+PEL D P V
Sbjct: 19 EIRQRVLELRQLVQRASYAYYVLDAPILEDVVYDQLYRELQDLETQYPELLTPDSPTQRV 78
Query: 118 G 118
G
Sbjct: 79 G 79
>gi|172056504|ref|YP_001812964.1| DNA ligase, NAD-dependent [Exiguobacterium sibiricum 255-15]
gi|254781332|sp|B1YJ17|DNLJ_EXIS2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|171989025|gb|ACB59947.1| DNA ligase, NAD-dependent [Exiguobacterium sibiricum 255-15]
Length = 664
Score = 92.6 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 24/59 (40%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+E L + + YY D P D YD++ L L+ PEL D P VG
Sbjct: 4 QARIEELRQKLNQYSYEYYVQDQPTVPDSTYDQLLRELTELETAHPELITPDSPTQRVG 62
>gi|312880304|ref|ZP_07740104.1| DNA ligase, NAD-dependent [Aminomonas paucivorans DSM 12260]
gi|310783595|gb|EFQ23993.1| DNA ligase, NAD-dependent [Aminomonas paucivorans DSM 12260]
Length = 696
Score = 92.6 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 29/64 (45%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
+ A + L + H YY LD+P+ D YD + L +L+ P+L D D P
Sbjct: 9 DRDAAASRIRELTEQIRLHDHRYYVLDDPVLPDDAYDALLRELRSLERAHPDLADPDSPT 68
Query: 115 NTVG 118
VG
Sbjct: 69 GRVG 72
>gi|319638552|ref|ZP_07993314.1| DNA ligase [Neisseria mucosa C102]
gi|317400301|gb|EFV80960.1| DNA ligase [Neisseria mucosa C102]
Length = 822
Score = 92.6 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 28/59 (47%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++YL + + YY LD P D YD++ L+AL+ PEL D P VG
Sbjct: 5 AQRIKYLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALERNHPELKLPDSPTQRVG 63
>gi|327475237|gb|AEA77213.1| DNA ligase [Bacillus aquimaris]
Length = 668
Score = 92.6 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K A V+ L + + Y+ LD P D YD++ L L++QFP+L D P
Sbjct: 1 MDKQSAEKRVKELHDVLNQYNYEYHVLDKPSVPDSEYDQLLRELIELEDQFPDLKTSDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SERVG 65
>gi|90408119|ref|ZP_01216289.1| DNA ligase [Psychromonas sp. CNPT3]
gi|90310805|gb|EAS38920.1| DNA ligase [Psychromonas sp. CNPT3]
Length = 667
Score = 92.6 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++V+ L + + YY LD P +D YD V ++L A++ + P L E+ P VG
Sbjct: 3 IALQVKKLTEQLEEYNYQYYVLDEPSISDAQYDAVFQQLKAIESEHPHLLHENSPTQKVG 62
>gi|303327018|ref|ZP_07357460.1| DNA ligase, NAD-dependent [Desulfovibrio sp. 3_1_syn3]
gi|302863006|gb|EFL85938.1| DNA ligase, NAD-dependent [Desulfovibrio sp. 3_1_syn3]
Length = 711
Score = 92.6 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 24/62 (38%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ L H Y+ LD P +D YD + L L+E++P L P
Sbjct: 21 AQERERARRLSAELERHNYLYHTLDAPEISDEQYDALFRELTELEERWPGLRSPHSPTLR 80
Query: 117 VG 118
VG
Sbjct: 81 VG 82
>gi|313822055|gb|EFS59769.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL036PA1]
gi|313823710|gb|EFS61424.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL036PA2]
Length = 740
Score = 92.6 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 45 LDKAKKVTSLSKGEAMIE----VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDAL 100
+D + + L EA E L + L Q YY D P +D YDR+ L +
Sbjct: 2 VDDSTQGGELEASEAGAEARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKV 61
Query: 101 QEQFPELFDEDHPWNTVG 118
++ PEL D P VG
Sbjct: 62 EDDHPELRTPDSPTQRVG 79
>gi|314919398|gb|EFS83229.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL050PA1]
Length = 740
Score = 92.6 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 45 LDKAKKVTSLSKGEAMIE----VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDAL 100
+D + + L EA E L + L Q YY D P +D YDR+ L +
Sbjct: 2 VDDSTQGGELEASEAGAEARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKV 61
Query: 101 QEQFPELFDEDHPWNTVG 118
++ PEL D P VG
Sbjct: 62 EDDHPELRTPDSPTQRVG 79
>gi|313834239|gb|EFS71953.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL056PA1]
gi|314924752|gb|EFS88583.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL036PA3]
Length = 740
Score = 92.6 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 45 LDKAKKVTSLSKGEAMIE----VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDAL 100
+D + + L EA E L + L Q YY D P +D YDR+ L +
Sbjct: 2 VDDSTQGGELEASEAGAEARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKV 61
Query: 101 QEQFPELFDEDHPWNTVG 118
++ PEL D P VG
Sbjct: 62 EDDHPELRTPDSPTQRVG 79
>gi|313763487|gb|EFS34851.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL013PA1]
gi|313773641|gb|EFS39607.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL074PA1]
gi|313801268|gb|EFS42519.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL110PA2]
gi|313808052|gb|EFS46533.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL087PA2]
gi|313811476|gb|EFS49190.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL083PA1]
gi|313813500|gb|EFS51214.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL025PA1]
gi|313816668|gb|EFS54382.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL059PA1]
gi|313819621|gb|EFS57335.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL046PA2]
gi|313826033|gb|EFS63747.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL063PA1]
gi|313829503|gb|EFS67217.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL063PA2]
gi|313831217|gb|EFS68931.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL007PA1]
gi|313840009|gb|EFS77723.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL086PA1]
gi|314914784|gb|EFS78615.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL005PA4]
gi|314920694|gb|EFS84525.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL050PA3]
gi|314930573|gb|EFS94404.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL067PA1]
gi|314954471|gb|EFS98877.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL027PA1]
gi|314961961|gb|EFT06062.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL002PA2]
gi|314963768|gb|EFT07868.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL082PA1]
gi|314968405|gb|EFT12503.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL037PA1]
gi|314974093|gb|EFT18189.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL053PA1]
gi|314976617|gb|EFT20712.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL045PA1]
gi|314978931|gb|EFT23025.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL072PA2]
gi|314984280|gb|EFT28372.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL005PA1]
gi|314986627|gb|EFT30719.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL005PA2]
gi|314990983|gb|EFT35074.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL005PA3]
gi|315079616|gb|EFT51609.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL053PA2]
gi|315081153|gb|EFT53129.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL078PA1]
gi|315087038|gb|EFT59014.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL002PA3]
gi|315089213|gb|EFT61189.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL072PA1]
gi|315095437|gb|EFT67413.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL038PA1]
gi|315099114|gb|EFT71090.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL059PA2]
gi|315100402|gb|EFT72378.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL046PA1]
gi|315109094|gb|EFT81070.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL030PA2]
gi|327328505|gb|EGE70267.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL096PA2]
gi|327329632|gb|EGE71388.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL096PA3]
gi|327334143|gb|EGE75857.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL097PA1]
gi|327444292|gb|EGE90946.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL043PA2]
gi|327444828|gb|EGE91482.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL043PA1]
gi|327446317|gb|EGE92971.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL013PA2]
gi|327452096|gb|EGE98750.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL092PA1]
gi|327454866|gb|EGF01521.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL087PA3]
gi|327457850|gb|EGF04505.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL083PA2]
gi|328752459|gb|EGF66075.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL020PA1]
gi|328755302|gb|EGF68918.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL087PA1]
gi|328758217|gb|EGF71833.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL025PA2]
gi|328759940|gb|EGF73524.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL099PA1]
Length = 740
Score = 92.6 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 45 LDKAKKVTSLSKGEAMIE----VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDAL 100
+D + + L EA E L + L Q YY D P +D YDR+ L +
Sbjct: 2 VDDSTQGGELEASEAGAEARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKV 61
Query: 101 QEQFPELFDEDHPWNTVG 118
++ PEL D P VG
Sbjct: 62 EDDHPELRTPDSPTQRVG 79
>gi|254460861|ref|ZP_05074277.1| DNA ligase, NAD-dependent [Rhodobacterales bacterium HTCC2083]
gi|206677450|gb|EDZ41937.1| DNA ligase, NAD-dependent [Rhodobacteraceae bacterium HTCC2083]
Length = 706
Score = 92.6 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 34/70 (48%)
Query: 49 KKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF 108
+T LS EA E+ L K Y+ DNP +D YD + +R A+++ FP L
Sbjct: 4 TDITELSVEEARAELAALSKALNTANVAYHGKDNPDLSDANYDALKQRNAAIEDHFPTLV 63
Query: 109 DEDHPWNTVG 118
ED P VG
Sbjct: 64 REDSPSKLVG 73
>gi|161621794|ref|YP_056321.2| NAD-dependent DNA ligase LigA [Propionibacterium acnes KPA171202]
gi|315106904|gb|EFT78880.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL030PA1]
Length = 740
Score = 92.6 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 45 LDKAKKVTSLSKGEAMIE----VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDAL 100
+D + + L EA E L + L Q YY D P +D YDR+ L +
Sbjct: 2 VDDSTQGGELEASEAGAEARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKV 61
Query: 101 QEQFPELFDEDHPWNTVG 118
++ PEL D P VG
Sbjct: 62 EDDHPELRTPDSPTQRVG 79
>gi|313793877|gb|EFS41901.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL110PA1]
Length = 740
Score = 92.6 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 45 LDKAKKVTSLSKGEAMIE----VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDAL 100
+D + + L EA E L + L Q YY D P +D YDR+ L +
Sbjct: 2 VDDSTQGGELEASEAGAEARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKV 61
Query: 101 QEQFPELFDEDHPWNTVG 118
++ PEL D P VG
Sbjct: 62 EDDHPELRTPDSPTQRVG 79
>gi|229548668|ref|ZP_04437393.1| DNA ligase, NAD-dependent [Enterococcus faecalis ATCC 29200]
gi|257420983|ref|ZP_05597973.1| DNA ligase [Enterococcus faecalis X98]
gi|312953107|ref|ZP_07771956.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0102]
gi|229306184|gb|EEN72180.1| DNA ligase, NAD-dependent [Enterococcus faecalis ATCC 29200]
gi|257162807|gb|EEU92767.1| DNA ligase [Enterococcus faecalis X98]
gi|310628941|gb|EFQ12224.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0102]
gi|315153982|gb|EFT97998.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0031]
gi|315156746|gb|EFU00763.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0043]
Length = 676
Score = 92.6 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 30/65 (46%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
L+ A + L K + YY D P D +YDR+ + L ++ +FP+L D P
Sbjct: 6 LTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLITPDSP 65
Query: 114 WNTVG 118
VG
Sbjct: 66 TQRVG 70
>gi|109898096|ref|YP_661351.1| DNA ligase, NAD-dependent [Pseudoalteromonas atlantica T6c]
gi|122972028|sp|Q15UZ1|DNLJ_PSEA6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|109700377|gb|ABG40297.1| DNA ligase, NAD-dependent [Pseudoalteromonas atlantica T6c]
Length = 677
Score = 92.6 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 24/59 (40%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ ++ + YY DNP D YDR+ L ++ P+L D P VG
Sbjct: 8 AQRLTQIINTINEYNYQYYVQDNPSVPDAEYDRLMRELLDIENNHPDLRSPDSPSQKVG 66
>gi|329770498|ref|ZP_08261876.1| DNA ligase [Gemella sanguinis M325]
gi|328836247|gb|EGF85916.1| DNA ligase [Gemella sanguinis M325]
Length = 666
Score = 92.6 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 35/62 (56%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
E E+ LVK+ + YY DNP +D YD + ++L+ L++++PEL E+ P
Sbjct: 2 KEIKEEIYKLVKLLNKYSYDYYVEDNPQISDTEYDTLYKQLEKLEKEYPELIQENSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|315145225|gb|EFT89241.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX2141]
Length = 676
Score = 92.6 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 30/65 (46%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
L+ A + L K + YY D P D +YDR+ + L ++ +FP+L D P
Sbjct: 6 LTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLITPDSP 65
Query: 114 WNTVG 118
VG
Sbjct: 66 TQRVG 70
>gi|255971181|ref|ZP_05421767.1| NAD-dependent DNA ligase [Enterococcus faecalis T1]
gi|255962199|gb|EET94675.1| NAD-dependent DNA ligase [Enterococcus faecalis T1]
Length = 676
Score = 92.6 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 30/65 (46%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
L+ A + L K + YY D P D +YDR+ + L ++ +FP+L D P
Sbjct: 6 LTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLITPDSP 65
Query: 114 WNTVG 118
VG
Sbjct: 66 TQRVG 70
>gi|307269776|ref|ZP_07551106.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX4248]
gi|306513886|gb|EFM82488.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX4248]
Length = 676
Score = 92.2 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 30/65 (46%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
L+ A + L K + YY D P D +YDR+ + L ++ +FP+L D P
Sbjct: 6 LTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLITPDSP 65
Query: 114 WNTVG 118
VG
Sbjct: 66 TQRVG 70
>gi|256959858|ref|ZP_05564029.1| NAD-dependent DNA ligase [Enterococcus faecalis Merz96]
gi|293385046|ref|ZP_06630880.1| DNA ligase, NAD-dependent [Enterococcus faecalis R712]
gi|293389317|ref|ZP_06633778.1| DNA ligase, NAD-dependent [Enterococcus faecalis S613]
gi|312906035|ref|ZP_07765048.1| DNA ligase, NAD-dependent [Enterococcus faecalis DAPTO 512]
gi|312909381|ref|ZP_07768237.1| DNA ligase, NAD-dependent [Enterococcus faecalis DAPTO 516]
gi|256950354|gb|EEU66986.1| NAD-dependent DNA ligase [Enterococcus faecalis Merz96]
gi|291077724|gb|EFE15088.1| DNA ligase, NAD-dependent [Enterococcus faecalis R712]
gi|291081339|gb|EFE18302.1| DNA ligase, NAD-dependent [Enterococcus faecalis S613]
gi|310628030|gb|EFQ11313.1| DNA ligase, NAD-dependent [Enterococcus faecalis DAPTO 512]
gi|311290405|gb|EFQ68961.1| DNA ligase, NAD-dependent [Enterococcus faecalis DAPTO 516]
Length = 676
Score = 92.2 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 30/65 (46%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
L+ A + L K + YY D P D +YDR+ + L ++ +FP+L D P
Sbjct: 6 LTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLITPDSP 65
Query: 114 WNTVG 118
VG
Sbjct: 66 TQRVG 70
>gi|312900318|ref|ZP_07759629.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0470]
gi|311292506|gb|EFQ71062.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0470]
Length = 676
Score = 92.2 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 30/65 (46%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
L+ A + L K + YY D P D +YDR+ + L ++ +FP+L D P
Sbjct: 6 LTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLITPDSP 65
Query: 114 WNTVG 118
VG
Sbjct: 66 TQRVG 70
>gi|229546559|ref|ZP_04435284.1| NAD-dependent DNA ligase [Enterococcus faecalis TX1322]
gi|256854411|ref|ZP_05559775.1| DNA ligase [Enterococcus faecalis T8]
gi|307274689|ref|ZP_07555861.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX2134]
gi|307296388|ref|ZP_07576212.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0411]
gi|229308304|gb|EEN74291.1| NAD-dependent DNA ligase [Enterococcus faecalis TX1322]
gi|256709971|gb|EEU25015.1| DNA ligase [Enterococcus faecalis T8]
gi|306496043|gb|EFM65628.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0411]
gi|306508618|gb|EFM77716.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX2134]
gi|315029103|gb|EFT41035.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX4000]
gi|315157732|gb|EFU01749.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0312]
gi|323479918|gb|ADX79357.1| DNA ligase, NAD-dependent [Enterococcus faecalis 62]
Length = 676
Score = 92.2 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 30/65 (46%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
L+ A + L K + YY D P D +YDR+ + L ++ +FP+L D P
Sbjct: 6 LTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLITPDSP 65
Query: 114 WNTVG 118
VG
Sbjct: 66 TQRVG 70
>gi|227517688|ref|ZP_03947737.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0104]
gi|257083650|ref|ZP_05578011.1| NAD-dependent DNA ligase [Enterococcus faecalis Fly1]
gi|227074843|gb|EEI12806.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0104]
gi|256991680|gb|EEU78982.1| NAD-dependent DNA ligase [Enterococcus faecalis Fly1]
gi|315146961|gb|EFT90977.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX4244]
Length = 676
Score = 92.2 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 30/65 (46%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
L+ A + L K + YY D P D +YDR+ + L ++ +FP+L D P
Sbjct: 6 LTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLITPDSP 65
Query: 114 WNTVG 118
VG
Sbjct: 66 TQRVG 70
>gi|329576880|gb|EGG58365.1| DNA ligase [Enterococcus faecalis TX1467]
Length = 676
Score = 92.2 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 30/65 (46%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
L+ A + L K + YY D P D +YDR+ + L ++ +FP+L D P
Sbjct: 6 LTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLITPDSP 65
Query: 114 WNTVG 118
VG
Sbjct: 66 TQRVG 70
>gi|307289585|ref|ZP_07569529.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0109]
gi|306499399|gb|EFM68772.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0109]
gi|315164584|gb|EFU08601.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX1302]
Length = 676
Score = 92.2 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 30/65 (46%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
L+ A + L K + YY D P D +YDR+ + L ++ +FP+L D P
Sbjct: 6 LTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLITPDSP 65
Query: 114 WNTVG 118
VG
Sbjct: 66 TQRVG 70
>gi|256617609|ref|ZP_05474455.1| NAD-dependent DNA ligase [Enterococcus faecalis ATCC 4200]
gi|257089149|ref|ZP_05583510.1| NAD-dependent DNA ligase [Enterococcus faecalis CH188]
gi|312904259|ref|ZP_07763421.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0635]
gi|256597136|gb|EEU16312.1| NAD-dependent DNA ligase [Enterococcus faecalis ATCC 4200]
gi|256997961|gb|EEU84481.1| NAD-dependent DNA ligase [Enterococcus faecalis CH188]
gi|310632355|gb|EFQ15638.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0635]
gi|315578805|gb|EFU90996.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0630]
Length = 676
Score = 92.2 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 30/65 (46%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
L+ A + L K + YY D P D +YDR+ + L ++ +FP+L D P
Sbjct: 6 LTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLITPDSP 65
Query: 114 WNTVG 118
VG
Sbjct: 66 TQRVG 70
>gi|308271402|emb|CBX28010.1| DNA ligase [uncultured Desulfobacterium sp.]
Length = 674
Score = 92.2 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 33/68 (48%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
++ + + +VE L H YY +D+P +D YD++ + L L+ ++P L
Sbjct: 1 MSDIIDPDIAKKVENLKSELQKHNYHYYVMDDPQISDTQYDKMMQELIELEAKYPMLSTP 60
Query: 111 DHPWNTVG 118
D P VG
Sbjct: 61 DSPSMKVG 68
>gi|257086082|ref|ZP_05580443.1| NAD-dependent DNA ligase [Enterococcus faecalis D6]
gi|256994112|gb|EEU81414.1| NAD-dependent DNA ligase [Enterococcus faecalis D6]
gi|315025779|gb|EFT37711.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX2137]
Length = 676
Score = 92.2 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 30/65 (46%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
L+ A + L K + YY D P D +YDR+ + L ++ +FP+L D P
Sbjct: 6 LTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLITPDSP 65
Query: 114 WNTVG 118
VG
Sbjct: 66 TQRVG 70
>gi|255973805|ref|ZP_05424391.1| NAD-dependent DNA ligase [Enterococcus faecalis T2]
gi|256964440|ref|ZP_05568611.1| NAD-dependent DNA ligase [Enterococcus faecalis HIP11704]
gi|257080988|ref|ZP_05575349.1| NAD-dependent DNA ligase [Enterococcus faecalis E1Sol]
gi|307272536|ref|ZP_07553789.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0855]
gi|307284516|ref|ZP_07564678.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0860]
gi|255966677|gb|EET97299.1| NAD-dependent DNA ligase [Enterococcus faecalis T2]
gi|256954936|gb|EEU71568.1| NAD-dependent DNA ligase [Enterococcus faecalis HIP11704]
gi|256989018|gb|EEU76320.1| NAD-dependent DNA ligase [Enterococcus faecalis E1Sol]
gi|306503193|gb|EFM72447.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0860]
gi|306510821|gb|EFM79838.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0855]
gi|315151576|gb|EFT95592.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0012]
gi|315170712|gb|EFU14729.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX1342]
gi|327534312|gb|AEA93146.1| NAD-dependent DNA ligase LigA [Enterococcus faecalis OG1RF]
Length = 676
Score = 92.2 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 30/65 (46%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
L+ A + L K + YY D P D +YDR+ + L ++ +FP+L D P
Sbjct: 6 LTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLITPDSP 65
Query: 114 WNTVG 118
VG
Sbjct: 66 TQRVG 70
>gi|300861866|ref|ZP_07107946.1| DNA ligase (NAD(+)) [Enterococcus faecalis TUSoD Ef11]
gi|300848391|gb|EFK76148.1| DNA ligase (NAD(+)) [Enterococcus faecalis TUSoD Ef11]
Length = 676
Score = 92.2 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 30/65 (46%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
L+ A + L K + YY D P D +YDR+ + L ++ +FP+L D P
Sbjct: 6 LTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLITPDSP 65
Query: 114 WNTVG 118
VG
Sbjct: 66 TQRVG 70
>gi|256957407|ref|ZP_05561578.1| NAD-dependent DNA ligase [Enterococcus faecalis DS5]
gi|257077597|ref|ZP_05571958.1| NAD-dependent DNA ligase [Enterococcus faecalis JH1]
gi|294779927|ref|ZP_06745308.1| DNA ligase (NAD(+)) [Enterococcus faecalis PC1.1]
gi|256947903|gb|EEU64535.1| NAD-dependent DNA ligase [Enterococcus faecalis DS5]
gi|256985627|gb|EEU72929.1| NAD-dependent DNA ligase [Enterococcus faecalis JH1]
gi|294452976|gb|EFG21397.1| DNA ligase (NAD(+)) [Enterococcus faecalis PC1.1]
gi|295114065|emb|CBL32702.1| DNA ligase, NAD-dependent [Enterococcus sp. 7L76]
gi|315036101|gb|EFT48033.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0027]
gi|315172192|gb|EFU16209.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX1346]
Length = 676
Score = 92.2 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 30/65 (46%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
L+ A + L K + YY D P D +YDR+ + L ++ +FP+L D P
Sbjct: 6 LTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLITPDSP 65
Query: 114 WNTVG 118
VG
Sbjct: 66 TQRVG 70
>gi|29375318|ref|NP_814472.1| DNA ligase, NAD-dependent [Enterococcus faecalis V583]
gi|227554838|ref|ZP_03984885.1| DNA ligase, NAD-dependent [Enterococcus faecalis HH22]
gi|256761492|ref|ZP_05502072.1| NAD-dependent DNA ligase [Enterococcus faecalis T3]
gi|257415292|ref|ZP_05592286.1| NAD-dependent DNA ligase [Enterococcus faecalis AR01/DG]
gi|257418334|ref|ZP_05595328.1| NAD-dependent DNA ligase [Enterococcus faecalis T11]
gi|81437298|sp|Q837V6|DNLJ_ENTFA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|29342778|gb|AAO80542.1| DNA ligase, NAD-dependent [Enterococcus faecalis V583]
gi|227176007|gb|EEI56979.1| DNA ligase, NAD-dependent [Enterococcus faecalis HH22]
gi|256682743|gb|EEU22438.1| NAD-dependent DNA ligase [Enterococcus faecalis T3]
gi|257157120|gb|EEU87080.1| NAD-dependent DNA ligase [Enterococcus faecalis ARO1/DG]
gi|257160162|gb|EEU90122.1| NAD-dependent DNA ligase [Enterococcus faecalis T11]
gi|315031451|gb|EFT43383.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0017]
gi|315166929|gb|EFU10946.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX1341]
gi|315575350|gb|EFU87541.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0309B]
gi|315581380|gb|EFU93571.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0309A]
Length = 676
Score = 92.2 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 30/65 (46%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
L+ A + L K + YY D P D +YDR+ + L ++ +FP+L D P
Sbjct: 6 LTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLITPDSP 65
Query: 114 WNTVG 118
VG
Sbjct: 66 TQRVG 70
>gi|87301433|ref|ZP_01084273.1| DNA ligase [Synechococcus sp. WH 5701]
gi|87283650|gb|EAQ75604.1| DNA ligase [Synechococcus sp. WH 5701]
Length = 698
Score = 92.2 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 27/55 (49%)
Query: 64 EYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E L ++ YY LD+P D +YDR+ L+ L+ PEL D P VG
Sbjct: 6 EELRRLLNRAAHAYYVLDSPEMEDAVYDRLYRELEQLERLHPELISPDSPTRRVG 60
>gi|315161924|gb|EFU05941.1| DNA ligase, NAD-dependent [Enterococcus faecalis TX0645]
Length = 676
Score = 92.2 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 30/65 (46%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
L+ A + L K + YY D P D +YDR+ + L ++ +FP+L D P
Sbjct: 6 LTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLITPDSP 65
Query: 114 WNTVG 118
VG
Sbjct: 66 TQRVG 70
>gi|314957538|gb|EFT01641.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL002PA1]
Length = 724
Score = 92.2 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
EA L + L Q YY D P +D YDR+ L +++ PEL D P
Sbjct: 2 AEARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKVEDDHPELRTPDSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|300743918|ref|ZP_07072938.1| DNA ligase, NAD-dependent [Rothia dentocariosa M567]
gi|300380279|gb|EFJ76842.1| DNA ligase, NAD-dependent [Rothia dentocariosa M567]
Length = 740
Score = 92.2 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 42 ESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQ 101
LD + ++T + E L + YY+ D P +D YDR+ RL+ ++
Sbjct: 16 LKALDSSAELTDTIRAEYA----ELTDTIRAARHDYYQADAPTLSDAEYDRLYRRLEQIE 71
Query: 102 EQFPELFDEDHPWNTVG 118
Q+P L D P VG
Sbjct: 72 AQYPALIANDSPTQEVG 88
>gi|257439787|ref|ZP_05615542.1| DNA ligase, NAD-dependent [Faecalibacterium prausnitzii A2-165]
gi|257197807|gb|EEU96091.1| DNA ligase, NAD-dependent [Faecalibacterium prausnitzii A2-165]
Length = 209
Score = 92.2 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 30/65 (46%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ +A E L I + + YY D P D YD ++ L AL+ +FP+L + P
Sbjct: 1 MELEQARKRAEELRVIIERNNRLYYDQDAPELEDFEYDALTRELKALEAEFPQLVTANSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQKVG 65
>gi|119487266|ref|ZP_01621017.1| DNA ligase [Lyngbya sp. PCC 8106]
gi|119455821|gb|EAW36956.1| DNA ligase [Lyngbya sp. PCC 8106]
Length = 685
Score = 92.2 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
+ L+ E V+ L + YY LD P+ D +YD++ L L+ +P+L
Sbjct: 1 MEQLT-SEIQQRVQKLSQQLHLASYAYYVLDAPIIEDAIYDQLYRELQQLETDYPQLITP 59
Query: 111 DHPWNTVG 118
D P VG
Sbjct: 60 DSPTQRVG 67
>gi|23098215|ref|NP_691681.1| NAD-dependent DNA ligase LigA [Oceanobacillus iheyensis HTE831]
gi|81741485|sp|Q8CXK6|DNLJ_OCEIH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|22776440|dbj|BAC12716.1| DNA ligase (polydeoxyribonucleotide synthase[NAD+]) [Oceanobacillus
iheyensis HTE831]
Length = 667
Score = 92.2 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 35/65 (53%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++K + ++E L+++ + YY LDNP D YD+ L L++ FP+L E+ P
Sbjct: 1 MNKEQVSKKIESLIELLNQYGYEYYVLDNPTVPDAEYDQKLRELQQLEQDFPDLVMENSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|331702040|ref|YP_004398999.1| DNA ligase [Lactobacillus buchneri NRRL B-30929]
gi|329129383|gb|AEB73936.1| DNA ligase [Lactobacillus buchneri NRRL B-30929]
Length = 675
Score = 92.2 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 33/67 (49%)
Query: 52 TSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
++S+ +A + L K YY D P D +YD+ ++L AL+ QFP++ D
Sbjct: 4 ENMSEQQAAAKAGDLRKQLNQWADEYYTYDAPSVEDAVYDQTYQQLVALENQFPQIVTPD 63
Query: 112 HPWNTVG 118
P VG
Sbjct: 64 SPTQKVG 70
>gi|318040766|ref|ZP_07972722.1| NAD-dependent DNA ligase LigA [Synechococcus sp. CB0101]
Length = 690
Score = 92.2 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
+ SL+ A L ++ YY LD P D +YDR+ L L+
Sbjct: 1 MSSPAPDESLAAPHARA--AELRQLLNRAAHAYYVLDAPEMEDPVYDRLYRELLDLETAH 58
Query: 105 PELFDEDHPWNTVG 118
PEL D P VG
Sbjct: 59 PELIAPDSPTQRVG 72
>gi|160872442|ref|ZP_02062574.1| DNA ligase, NAD-dependent [Rickettsiella grylli]
gi|159121241|gb|EDP46579.1| DNA ligase, NAD-dependent [Rickettsiella grylli]
Length = 674
Score = 92.2 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 26/46 (56%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY LD PL D YD + L+A+++++PEL D P VG
Sbjct: 22 HNYHYYILDAPLINDATYDTLFRELEAIEKRYPELITPDSPTQRVG 67
>gi|119356312|ref|YP_910956.1| DNA ligase, NAD-dependent [Chlorobium phaeobacteroides DSM 266]
gi|166215573|sp|A1BDQ5|DNLJ_CHLPD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|119353661|gb|ABL64532.1| DNA ligase, NAD-dependent [Chlorobium phaeobacteroides DSM 266]
Length = 676
Score = 92.2 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 28/56 (50%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+E L + H YY P +D +DR+ ERL L++ FP+ D P + VG
Sbjct: 11 IEELRREINRHNTLYYVDARPEISDYEFDRLMERLIELEKAFPDFVTPDSPSHRVG 66
>gi|325002847|ref|ZP_08123959.1| NAD-dependent DNA ligase LigA [Pseudonocardia sp. P1]
Length = 615
Score = 92.2 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 30/68 (44%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
++S + +A L HQ YY LD P+ +DG +D + L L++ P L
Sbjct: 1 MSSQTDEQARERHAQLAAEVADHQFRYYVLDAPVVSDGQFDELWHELLGLEDAHPGLATP 60
Query: 111 DHPWNTVG 118
P VG
Sbjct: 61 QSPTQKVG 68
>gi|317127163|ref|YP_004093445.1| DNA ligase, NAD-dependent [Bacillus cellulosilyticus DSM 2522]
gi|315472111|gb|ADU28714.1| DNA ligase, NAD-dependent [Bacillus cellulosilyticus DSM 2522]
Length = 670
Score = 92.2 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 33/65 (50%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++K + E++ L I + YY LD P +D YD++ L L+E +PE +D P
Sbjct: 1 MAKDDIKQEIDRLTNILNDYAYHYYVLDQPKVSDAEYDQLLHELTKLEEAYPEWKRDDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SERVG 65
>gi|313673736|ref|YP_004051847.1| DNA ligase, nad-dependent [Calditerrivibrio nitroreducens DSM
19672]
gi|312940492|gb|ADR19684.1| DNA ligase, NAD-dependent [Calditerrivibrio nitroreducens DSM
19672]
Length = 655
Score = 92.2 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 31/56 (55%)
Query: 64 EYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
+ LVK HH YY L++P +D YD + ++L ++E+ PE D P VG+
Sbjct: 9 DRLVKELNHHCIRYYLLNDPAISDAKYDNLYKQLRKIEEEHPEWISPDSPTQRVGF 64
>gi|148243508|ref|YP_001228665.1| NAD-dependent DNA ligase LigA [Synechococcus sp. RCC307]
gi|166216253|sp|A5GWQ3|DNLJ_SYNR3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|147851818|emb|CAK29312.1| NAD-dependent DNA ligase [Synechococcus sp. RCC307]
Length = 675
Score = 91.8 bits (227), Expect = 2e-17, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 29/62 (46%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ + L ++ YY LD P F D +YDR+ L L++Q P+L D P
Sbjct: 5 AQQQLRAAELRQLLNRAAHAYYVLDAPEFEDAVYDRLYRELLDLEQQHPDLLSADSPTQR 64
Query: 117 VG 118
VG
Sbjct: 65 VG 66
>gi|226365931|ref|YP_002783714.1| NAD-dependent DNA ligase LigA [Rhodococcus opacus B4]
gi|254781403|sp|C1B1S4|DNLJ_RHOOB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|226244421|dbj|BAH54769.1| NAD(+)-dependent DNA ligase [Rhodococcus opacus B4]
Length = 697
Score = 91.8 bits (227), Expect = 2e-17, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 35/74 (47%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
+ ++ + + + G L + HQ YY D P+ +DG +D + L+ L+ Q+
Sbjct: 2 VSESTEAPTPAPGSVREHWNELAEDVRQHQFRYYVRDAPIISDGEFDALLGELNDLENQY 61
Query: 105 PELFDEDHPWNTVG 118
P+L D P VG
Sbjct: 62 PDLRTPDSPTQLVG 75
>gi|111023430|ref|YP_706402.1| NAD-dependent DNA ligase LigA [Rhodococcus jostii RHA1]
gi|123045472|sp|Q0S2J2|DNLJ_RHOSR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|110822960|gb|ABG98244.1| DNA ligase (NAD+) [Rhodococcus jostii RHA1]
Length = 696
Score = 91.8 bits (227), Expect = 2e-17, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 35/74 (47%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
+ ++ + + + G L + HQ YY D P+ +DG +D + L+ L+ Q+
Sbjct: 1 MSESTEAPTPAPGHVREHWNELAEEVRQHQFRYYVRDAPIISDGEFDVLLGELNDLENQY 60
Query: 105 PELFDEDHPWNTVG 118
P+L D P VG
Sbjct: 61 PDLRTPDSPTQLVG 74
>gi|254411541|ref|ZP_05025318.1| DNA ligase, NAD-dependent [Microcoleus chthonoplastes PCC 7420]
gi|196182042|gb|EDX77029.1| DNA ligase, NAD-dependent [Microcoleus chthonoplastes PCC 7420]
Length = 676
Score = 91.8 bits (227), Expect = 2e-17, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 28/60 (46%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
V+ L + YY DNP+ D +YD++ L L+ Q+PEL D P VG
Sbjct: 4 VKQRVQELRNLLQQASYAYYVRDNPMMEDAVYDQLYRELQDLESQYPELVTPDSPTQRVG 63
>gi|297538570|ref|YP_003674339.1| DNA ligase, NAD-dependent [Methylotenera sp. 301]
gi|297257917|gb|ADI29762.1| DNA ligase, NAD-dependent [Methylotenera sp. 301]
Length = 682
Score = 91.8 bits (227), Expect = 2e-17, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 27/65 (41%)
Query: 53 SLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDH 112
SL + + + L ++ + YY LD P D YD V L ++ Q P L D
Sbjct: 13 SLGQPNLALRCQQLRQLIAQYDHEYYVLDAPSVPDSEYDLVYRDLQDIERQHPNLITPDS 72
Query: 113 PWNTV 117
P V
Sbjct: 73 PTQRV 77
>gi|227494609|ref|ZP_03924925.1| DNA ligase (NAD(+)) [Actinomyces coleocanis DSM 15436]
gi|226832343|gb|EEH64726.1| DNA ligase (NAD(+)) [Actinomyces coleocanis DSM 15436]
Length = 806
Score = 91.8 bits (227), Expect = 2e-17, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 32/72 (44%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
+ V + EA + LV + YY LD P +D YD + E L L+ ++P
Sbjct: 21 EKTPVDTPVPAEATAKWRDLVTEINQMRFDYYNLDAPTASDAEYDVLFEELKDLEAKWPM 80
Query: 107 LFDEDHPWNTVG 118
L D P TVG
Sbjct: 81 LVTPDSPTQTVG 92
>gi|119961355|ref|YP_947208.1| DNA ligase, NAD-dependent [Arthrobacter aurescens TC1]
gi|166215391|sp|A1R4P6|DNLJ_ARTAT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|119948214|gb|ABM07125.1| DNA ligase, NAD-dependent [Arthrobacter aurescens TC1]
Length = 768
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 15/84 (17%)
Query: 50 KVTSLSKGEAMI---------------EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVS 94
V + ++ A E E L + ++ YY+ D+P +D +D +
Sbjct: 9 PVDTTTQDAAAAIVAEEGTPPSESLRDEYEQLADLVRKYRYAYYQEDSPTVSDAEFDELY 68
Query: 95 ERLDALQEQFPELFDEDHPWNTVG 118
RL+ L+ PEL D P VG
Sbjct: 69 RRLEELEALHPELVSNDSPTQEVG 92
>gi|92112835|ref|YP_572763.1| DNA ligase, NAD-dependent [Chromohalobacter salexigens DSM 3043]
gi|122990589|sp|Q1QZP4|DNLJ_CHRSD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|91795925|gb|ABE58064.1| DNA ligase, NAD-dependent [Chromohalobacter salexigens DSM 3043]
Length = 691
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 25/63 (39%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
+ L + YY D+P TD YD + L +L+ + PEL D P
Sbjct: 5 PQAVRERADTLHQQLDDANYQYYVEDDPRITDAEYDALLRELQSLEAEHPELKTPDSPTQ 64
Query: 116 TVG 118
VG
Sbjct: 65 RVG 67
>gi|332188479|ref|ZP_08390201.1| DNA ligase, NAD-dependent [Sphingomonas sp. S17]
gi|332011491|gb|EGI53574.1| DNA ligase, NAD-dependent [Sphingomonas sp. S17]
Length = 712
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 24/51 (47%)
Query: 68 KIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ HH + Y+ D P +D YD + R A++ FP L D P VG
Sbjct: 23 REIAHHNRLYHTEDAPEISDADYDALIRRNMAIEAAFPHLIRSDSPNRQVG 73
>gi|170727191|ref|YP_001761217.1| DNA ligase, NAD-dependent [Shewanella woodyi ATCC 51908]
gi|254781418|sp|B1KJT5|DNLJ_SHEWM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|169812538|gb|ACA87122.1| DNA ligase, NAD-dependent [Shewanella woodyi ATCC 51908]
Length = 670
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 28/60 (46%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
A+ E++ L + H YY D+P D YDR+ RL L+ + P L P VG
Sbjct: 3 AIEEIKQLTETINEHNHSYYVEDSPSVPDAEYDRLINRLKQLEGENPHLCLPTSPTQRVG 62
>gi|319943831|ref|ZP_08018112.1| DNA ligase [Lautropia mirabilis ATCC 51599]
gi|319743064|gb|EFV95470.1| DNA ligase [Lautropia mirabilis ATCC 51599]
Length = 779
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 27/63 (42%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
+ V+ L L H + YY D P D +YD + L L+ ++P L D P
Sbjct: 20 PADIRARVQTLRAELLAHNRAYYEEDAPTVEDSVYDGLFLELQQLEARWPALLTPDSPTQ 79
Query: 116 TVG 118
VG
Sbjct: 80 RVG 82
>gi|298369197|ref|ZP_06980515.1| DNA ligase, NAD-dependent [Neisseria sp. oral taxon 014 str. F0314]
gi|298283200|gb|EFI24687.1| DNA ligase, NAD-dependent [Neisseria sp. oral taxon 014 str. F0314]
Length = 830
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 28/59 (47%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++L + + YY LD P D YD++ L+AL+ PEL D P VG
Sbjct: 5 AQRIKHLTALLNRYAYEYYTLDAPSVPDAEYDKLFRELEALERNHPELKLPDSPTQRVG 63
>gi|118594798|ref|ZP_01552145.1| DNA ligase, NAD-dependent [Methylophilales bacterium HTCC2181]
gi|118440576|gb|EAV47203.1| DNA ligase, NAD-dependent [Methylophilales bacterium HTCC2181]
Length = 671
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L K+ H YY LDNPL +D +D++ + A+++ PEL D P VG
Sbjct: 7 IKERLVDLKKLISEHNYHYYVLDNPLISDAEFDKIFLEIKAIEDLNPELITIDSPTQRVG 66
>gi|296171259|ref|ZP_06852663.1| DNA ligase [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295894227|gb|EFG73984.1| DNA ligase [Mycobacterium parascrofulaceum ATCC BAA-614]
Length = 693
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
+A+ V+ E + L HQ YY D P+ +D +D + L AL++++PE
Sbjct: 5 EAEPVS----PEVRRRWQELADEVREHQFRYYIKDAPIVSDAEFDTMFNDLLALEDRYPE 60
Query: 107 LFDEDHPWNTVG 118
L D P VG
Sbjct: 61 LRVPDSPTQLVG 72
>gi|289450450|ref|YP_003474988.1| DNA ligase (NAD+) [Clostridiales genomosp. BVAB3 str. UPII9-5]
gi|289184997|gb|ADC91422.1| DNA ligase (NAD+) [Clostridiales genomosp. BVAB3 str. UPII9-5]
Length = 758
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 34/88 (38%), Gaps = 7/88 (7%)
Query: 31 EAKFLPNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLY 90
E K A + LDK + E+ L H YY D+P+ +D Y
Sbjct: 71 EKKLKEAVAAALAKLDKTASPE-------LREITELRAELNFHNNLYYVEDSPIISDYSY 123
Query: 91 DRVSERLDALQEQFPELFDEDHPWNTVG 118
D + RL+ L+ PE D P VG
Sbjct: 124 DAMLRRLEELETAHPEYMTTDSPTVKVG 151
>gi|37520296|ref|NP_923673.1| NAD-dependent DNA ligase LigA [Gloeobacter violaceus PCC 7421]
gi|81710991|sp|Q7NMN8|DNLJ_GLOVI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|35211289|dbj|BAC88668.1| DNA ligase [Gloeobacter violaceus PCC 7421]
Length = 668
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 29/68 (42%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
+++ E L + YY LD P +D +YD+ L L+ ++PEL
Sbjct: 1 MSTTVPPEIEEHTRTLRALLHRWGYAYYVLDAPEVSDAIYDQHYRELVDLESRYPELVSP 60
Query: 111 DHPWNTVG 118
D P VG
Sbjct: 61 DSPTRRVG 68
>gi|299529801|ref|ZP_07043234.1| DNA ligase, NAD-dependent [Comamonas testosteroni S44]
gi|298722215|gb|EFI63139.1| DNA ligase, NAD-dependent [Comamonas testosteroni S44]
Length = 708
Score = 91.5 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 48 AKKVTSLS---KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
K T+++ +V L YY LD P DG YDRV ++L+AL+ +
Sbjct: 15 QKPSTAINAGVPESVTSKVAALRAQLHQWAHEYYVLDTPTVPDGEYDRVYQQLEALEGAY 74
Query: 105 PELFDEDHPWNTV 117
P L D P V
Sbjct: 75 PALVTPDSPTQRV 87
>gi|264678823|ref|YP_003278730.1| DNA ligase, NAD-dependent [Comamonas testosteroni CNB-2]
gi|262209336|gb|ACY33434.1| DNA ligase, NAD-dependent [Comamonas testosteroni CNB-2]
Length = 708
Score = 91.5 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 48 AKKVTSLS---KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
K T+++ +V L YY LD P DG YDRV ++L+AL+ +
Sbjct: 15 QKPSTAINAGVPESVTSKVAALRAQLHQWAHEYYVLDTPTVPDGEYDRVYQQLEALEGAY 74
Query: 105 PELFDEDHPWNTV 117
P L D P V
Sbjct: 75 PALVTPDSPTQRV 87
>gi|257387145|ref|YP_003176918.1| NAD-dependent DNA ligase LigA [Halomicrobium mukohataei DSM 12286]
gi|257169452|gb|ACV47211.1| DNA ligase, NAD-dependent [Halomicrobium mukohataei DSM 12286]
Length = 700
Score = 91.5 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 31 EAKFLPNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLY 90
EA P+ +E + + V S EA + + L + +H YY L +P+ D Y
Sbjct: 6 EATPPPDNPYVEDPPTEFEPVEDFSDDEAREQAQRLREAIRYHDHRYYVLADPVIGDRAY 65
Query: 91 DRVSERLDALQEQFPELFDEDHPWNTVG 118
D + RL+AL++ F +L E P VG
Sbjct: 66 DALFARLEALEDAF-DLDREASPTQRVG 92
>gi|296119554|ref|ZP_06838112.1| DNA ligase, NAD-dependent [Corynebacterium ammoniagenes DSM 20306]
gi|295967437|gb|EFG80704.1| DNA ligase, NAD-dependent [Corynebacterium ammoniagenes DSM 20306]
Length = 700
Score = 91.5 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 52 TSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
L+ EA L + H++ YY + P D +D + + L AL+ P+L D
Sbjct: 8 DQLNPEEAQKRWAELAQEVRRHRELYY-NEQPAIPDADFDALFQELVALESAHPQLVVPD 66
Query: 112 HPWNTVG 118
P VG
Sbjct: 67 SPTQEVG 73
>gi|28377923|ref|NP_784815.1| DNA ligase (NAD+) [Lactobacillus plantarum WCFS1]
gi|81631729|sp|Q88XQ0|DNLJ_LACPL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|28270757|emb|CAD63662.1| DNA ligase (NAD+) [Lactobacillus plantarum WCFS1]
Length = 679
Score = 91.5 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 35/71 (49%)
Query: 48 AKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
A K +++ +A E L + ++ YY D P D +YD+ ERL L++ FP+L
Sbjct: 2 ADKPNTMTVEQAADEAAALRQTLNEWRRQYYDEDAPNVEDSVYDQKYERLVELEQTFPQL 61
Query: 108 FDEDHPWNTVG 118
D P VG
Sbjct: 62 VTPDSPTQLVG 72
>gi|228995667|ref|ZP_04155330.1| DNA ligase [Bacillus mycoides Rock3-17]
gi|228764044|gb|EEM12928.1| DNA ligase [Bacillus mycoides Rock3-17]
Length = 669
Score = 91.5 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 32/65 (49%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK EA +E L + Y+ LDNP +D YDR + L L+ + PE ED P
Sbjct: 1 MSKEEAKQRIEELRDMLNAFNYQYHVLDNPSVSDAEYDRDMQELIKLEAENPEFLIEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TVRVG 65
>gi|229003296|ref|ZP_04161126.1| DNA ligase [Bacillus mycoides Rock1-4]
gi|228757914|gb|EEM07129.1| DNA ligase [Bacillus mycoides Rock1-4]
Length = 669
Score = 91.5 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 32/65 (49%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK EA +E L + Y+ LDNP +D YDR + L L+ + PE ED P
Sbjct: 1 MSKEEAKQRIEELRDMLNAFNYQYHVLDNPSVSDAEYDRDMQELIKLEAENPEFLIEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TVRVG 65
>gi|254556107|ref|YP_003062524.1| DNA ligase (NAD+) [Lactobacillus plantarum JDM1]
gi|300766626|ref|ZP_07076543.1| NAD-dependent DNA ligase LigA [Lactobacillus plantarum subsp.
plantarum ATCC 14917]
gi|308180104|ref|YP_003924232.1| DNA ligase (NAD+) [Lactobacillus plantarum subsp. plantarum ST-III]
gi|254045034|gb|ACT61827.1| DNA ligase (NAD+) [Lactobacillus plantarum JDM1]
gi|300495726|gb|EFK30877.1| NAD-dependent DNA ligase LigA [Lactobacillus plantarum subsp.
plantarum ATCC 14917]
gi|308045595|gb|ADN98138.1| DNA ligase (NAD+) [Lactobacillus plantarum subsp. plantarum ST-III]
Length = 679
Score = 91.5 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 35/71 (49%)
Query: 48 AKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
A K +++ +A E L + ++ YY D P D +YD+ ERL L++ FP+L
Sbjct: 2 ADKPNTMTVEQAADEAAALRQTLNEWRRQYYDEDAPNVEDSVYDQKYERLVELEQTFPQL 61
Query: 108 FDEDHPWNTVG 118
D P VG
Sbjct: 62 VTPDSPTQLVG 72
>gi|228989472|ref|ZP_04149457.1| DNA ligase [Bacillus pseudomycoides DSM 12442]
gi|228770197|gb|EEM18776.1| DNA ligase [Bacillus pseudomycoides DSM 12442]
Length = 669
Score = 91.5 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 32/65 (49%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK EA +E L + Y+ LDNP +D YDR + L L+ + PE ED P
Sbjct: 1 MSKEEAKQRIEELRDMLNAFNYQYHVLDNPSVSDAEYDRDMQELIKLEAENPEFLIEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TVRVG 65
>gi|89075460|ref|ZP_01161871.1| DNA ligase [Photobacterium sp. SKA34]
gi|89048732|gb|EAR54303.1| DNA ligase [Photobacterium sp. SKA34]
Length = 670
Score = 91.5 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+H YY DNP D YDR+ ++L ++ + PE D P VG
Sbjct: 18 YHGHRYYVEDNPEIPDAEYDRMMQQLLKIEAEHPEWVTVDSPSQRVG 64
>gi|229083590|ref|ZP_04215919.1| DNA ligase [Bacillus cereus Rock3-44]
gi|228699722|gb|EEL52378.1| DNA ligase [Bacillus cereus Rock3-44]
Length = 669
Score = 91.5 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 32/65 (49%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK +A +E L + Y+ LDNP +D YDR + L L+ + PE ED P
Sbjct: 1 MSKEKAKQRIEELRDMLNACNYQYHVLDNPSVSDAEYDRDMQELIKLEAENPEFLTEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TVRVG 65
>gi|89097084|ref|ZP_01169975.1| DNA ligase [Bacillus sp. NRRL B-14911]
gi|89088464|gb|EAR67574.1| DNA ligase [Bacillus sp. NRRL B-14911]
Length = 668
Score = 91.5 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 29/65 (44%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ A V+ L + + YY LD P D YDR+ + L L+ + P+L D P
Sbjct: 1 MDLQNAEARVKELHNLLNQYGYEYYVLDKPSVPDSEYDRLLKELMELENEHPQLKTADSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|331005395|ref|ZP_08328777.1| DNA ligase [gamma proteobacterium IMCC1989]
gi|330420789|gb|EGG95073.1| DNA ligase [gamma proteobacterium IMCC1989]
Length = 707
Score = 91.5 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 32/73 (43%)
Query: 46 DKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFP 105
D A + S + ++ L + H+ YY LDNP D YDR+ L L+++ P
Sbjct: 21 DAAHSLDFSSITQLDQQLNELREKIHHYSYQYYALDNPTIPDAEYDRLFLELQTLEKENP 80
Query: 106 ELFDEDHPWNTVG 118
D P VG
Sbjct: 81 SYVTSDSPTQRVG 93
>gi|84623945|ref|YP_451317.1| NAD-dependent DNA ligase LigA [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|123752764|sp|Q2P334|DNLJ_XANOM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|84367885|dbj|BAE69043.1| DNA ligase [Xanthomonas oryzae pv. oryzae MAFF 311018]
Length = 841
Score = 91.5 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L + + YY L +P TD YD++ L L++++PEL D P VG
Sbjct: 5 VIERARELRRRIENADHRYYDLADPEITDAQYDQLFRELQELEQKYPELVTADSPSMRVG 64
>gi|17229209|ref|NP_485757.1| NAD-dependent DNA ligase LigA [Nostoc sp. PCC 7120]
gi|81772126|sp|Q8YW98|DNLJ_ANASP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|17135537|dbj|BAB78083.1| DNA ligase [Nostoc sp. PCC 7120]
Length = 677
Score = 91.5 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 28/59 (47%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ VE L ++ YY D P+ D +YD++ L L+ Q PEL D P +G
Sbjct: 8 VKRVEELRRLLQQASYAYYVSDAPIMEDAVYDQLYRELQQLEIQHPELVTPDSPTQRIG 66
>gi|122879187|ref|YP_201049.6| NAD-dependent DNA ligase LigA [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|166216280|sp|Q5H057|DNLJ_XANOR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
Length = 841
Score = 91.5 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L + + YY L +P TD YD++ L L++++PEL D P VG
Sbjct: 5 VIERARELRRRIENADHRYYDLADPEITDAQYDQLFRELQELEQKYPELVTADSPSMRVG 64
>gi|290967938|ref|ZP_06559488.1| DNA ligase (NAD(+)) [Megasphaera genomosp. type_1 str. 28L]
gi|290782077|gb|EFD94655.1| DNA ligase (NAD(+)) [Megasphaera genomosp. type_1 str. 28L]
Length = 668
Score = 91.5 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 15/63 (23%), Positives = 29/63 (46%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
+ + + + + K YY LD P +D YD + L+ L++++P+ D P
Sbjct: 5 EEQEKVRLAEIKKQLAELSYQYYTLDAPTVSDYEYDMLYRELETLEKKYPQWVTPDSPTQ 64
Query: 116 TVG 118
+G
Sbjct: 65 RIG 67
>gi|262203140|ref|YP_003274348.1| DNA ligase, NAD-dependent [Gordonia bronchialis DSM 43247]
gi|262086487|gb|ACY22455.1| DNA ligase, NAD-dependent [Gordonia bronchialis DSM 43247]
Length = 691
Score = 91.5 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 29/62 (46%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ + L HQ YY D+P+ TDG +D + RL L++ PEL D P
Sbjct: 12 ADLREQWSTLADEIREHQFRYYVKDSPVITDGEFDALLRRLQDLEDAHPELAAPDSPTKL 71
Query: 117 VG 118
VG
Sbjct: 72 VG 73
>gi|221639033|ref|YP_002525295.1| DNA ligase [Rhodobacter sphaeroides KD131]
gi|254781405|sp|B9KRK2|DNLJ_RHOSK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|221159814|gb|ACM00794.1| DNA ligase [Rhodobacter sphaeroides KD131]
Length = 704
Score = 91.5 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 36/74 (48%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
+ + V L++ EA E+ L + Y+ D P +D YD + R A++EQF
Sbjct: 1 MQDERPVDQLTEAEAAAELARLAEAIEAANTAYHTHDAPQISDADYDALRLRNRAIEEQF 60
Query: 105 PELFDEDHPWNTVG 118
PEL D P + VG
Sbjct: 61 PELRRSDSPSDRVG 74
>gi|325962711|ref|YP_004240617.1| DNA ligase, NAD-dependent [Arthrobacter phenanthrenivorans Sphe3]
gi|323468798|gb|ADX72483.1| DNA ligase, NAD-dependent [Arthrobacter phenanthrenivorans Sphe3]
Length = 767
Score = 91.1 bits (225), Expect = 4e-17, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 36 PNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSE 95
P ++ + + S+ E E LV + ++ YY+ D PL +D +D +
Sbjct: 7 PAEQTATRTTEPVEP-ESVPSESVREEYENLVDLVRKYRFAYYQEDAPLVSDAEFDELFR 65
Query: 96 RLDALQEQFPELFDEDHPWNTVG 118
RL+ ++ PEL D P VG
Sbjct: 66 RLEEIEALHPELVSNDSPTQEVG 88
>gi|206890248|ref|YP_002249789.1| DNA ligase, NAD-dependent [Thermodesulfovibrio yellowstonii DSM
11347]
gi|254781443|sp|B5YIF8|DNLJ_THEYD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|206742186|gb|ACI21243.1| DNA ligase, NAD-dependent [Thermodesulfovibrio yellowstonii DSM
11347]
Length = 670
Score = 91.1 bits (225), Expect = 4e-17, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
+ E+E LVK +H YY LD+P+ +D YD + RL L+E++ D P
Sbjct: 5 PEDIKKEIEKLVKELNYHNYRYYVLDSPVISDEEYDMMLRRLKELEEKW-GYILPDSPTQ 63
Query: 116 TVG 118
VG
Sbjct: 64 RVG 66
>gi|261207462|ref|ZP_05922148.1| NAD-dependent DNA ligase [Enterococcus faecium TC 6]
gi|289565873|ref|ZP_06446314.1| DNA ligase, NAD-dependent [Enterococcus faecium D344SRF]
gi|294618097|ref|ZP_06697694.1| DNA ligase, NAD-dependent [Enterococcus faecium E1679]
gi|260078353|gb|EEW66058.1| NAD-dependent DNA ligase [Enterococcus faecium TC 6]
gi|289162333|gb|EFD10192.1| DNA ligase, NAD-dependent [Enterococcus faecium D344SRF]
gi|291595669|gb|EFF26965.1| DNA ligase, NAD-dependent [Enterococcus faecium E1679]
Length = 679
Score = 91.1 bits (225), Expect = 4e-17, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 30/66 (45%)
Query: 53 SLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDH 112
++ EA E L + YY D P D +YD+ L A++EQ+P+L D
Sbjct: 5 EMTIDEAAKRAEELRTRLNQWSREYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITSDS 64
Query: 113 PWNTVG 118
P VG
Sbjct: 65 PTQRVG 70
>gi|145220287|ref|YP_001130996.1| DNA ligase, NAD-dependent [Prosthecochloris vibrioformis DSM 265]
gi|190359271|sp|A4SG85|DNLJ_PROVI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|145206451|gb|ABP37494.1| DNA ligase, NAD-dependent [Chlorobium phaeovibrioides DSM 265]
Length = 674
Score = 91.1 bits (225), Expect = 4e-17, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 25/59 (42%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E E L H YY P +D +D + +RL L+ + PEL D P VG
Sbjct: 8 RSEAERLRSDIERHNHLYYVEAKPELSDYDFDLLLDRLVQLEREHPELVTPDSPTQRVG 66
>gi|69246831|ref|ZP_00604140.1| NAD-dependent DNA ligase [Enterococcus faecium DO]
gi|260560049|ref|ZP_05832227.1| NAD-dependent DNA ligase [Enterococcus faecium C68]
gi|293559999|ref|ZP_06676507.1| DNA ligase, NAD-dependent [Enterococcus faecium E1162]
gi|294621040|ref|ZP_06700232.1| DNA ligase, NAD-dependent [Enterococcus faecium U0317]
gi|314937827|ref|ZP_07845144.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133a04]
gi|314941627|ref|ZP_07848507.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133C]
gi|314948874|ref|ZP_07852243.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0082]
gi|314951008|ref|ZP_07854075.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133A]
gi|314993009|ref|ZP_07858405.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133B]
gi|314996456|ref|ZP_07861499.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133a01]
gi|68195064|gb|EAN09526.1| NAD-dependent DNA ligase [Enterococcus faecium DO]
gi|260073884|gb|EEW62208.1| NAD-dependent DNA ligase [Enterococcus faecium C68]
gi|291599354|gb|EFF30379.1| DNA ligase, NAD-dependent [Enterococcus faecium U0317]
gi|291606087|gb|EFF35513.1| DNA ligase, NAD-dependent [Enterococcus faecium E1162]
gi|313589438|gb|EFR68283.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133a01]
gi|313592532|gb|EFR71377.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133B]
gi|313596863|gb|EFR75708.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133A]
gi|313599518|gb|EFR78361.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133C]
gi|313642858|gb|EFS07438.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0133a04]
gi|313644664|gb|EFS09244.1| DNA ligase, NAD-dependent [Enterococcus faecium TX0082]
Length = 679
Score = 91.1 bits (225), Expect = 4e-17, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 30/66 (45%)
Query: 53 SLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDH 112
++ EA E L + YY D P D +YD+ L A++EQ+P+L D
Sbjct: 5 EMTIDEAAKRAEELRTRLNQWSREYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITSDS 64
Query: 113 PWNTVG 118
P VG
Sbjct: 65 PTQRVG 70
>gi|293569137|ref|ZP_06680444.1| DNA ligase, NAD-dependent [Enterococcus faecium E1071]
gi|291588184|gb|EFF20025.1| DNA ligase, NAD-dependent [Enterococcus faecium E1071]
Length = 679
Score = 91.1 bits (225), Expect = 4e-17, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 30/66 (45%)
Query: 53 SLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDH 112
++ EA E L + YY D P D +YD+ L A++EQ+P+L D
Sbjct: 5 EMTIDEAAKRAEELRTRLNQWSREYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITSDS 64
Query: 113 PWNTVG 118
P VG
Sbjct: 65 PTQRVG 70
>gi|325110927|ref|YP_004271995.1| DNA ligase [Planctomyces brasiliensis DSM 5305]
gi|324971195|gb|ADY61973.1| DNA ligase [Planctomyces brasiliensis DSM 5305]
Length = 675
Score = 91.1 bits (225), Expect = 4e-17, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 26/60 (43%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E+ L H + YY P TD +DR+ RL L++Q PE D P VG
Sbjct: 5 VAQEIASLRDEIERHNRLYYVEAQPEITDREFDRLLNRLIDLEQQHPEFQSPDSPTQKVG 64
>gi|257878462|ref|ZP_05658115.1| NAD-dependent DNA ligase [Enterococcus faecium 1,230,933]
gi|257889341|ref|ZP_05668994.1| NAD-dependent DNA ligase [Enterococcus faecium 1,231,410]
gi|257894353|ref|ZP_05674006.1| NAD-dependent DNA ligase [Enterococcus faecium 1,231,408]
gi|258616016|ref|ZP_05713786.1| DNA ligase, NAD-dependent [Enterococcus faecium DO]
gi|257812690|gb|EEV41448.1| NAD-dependent DNA ligase [Enterococcus faecium 1,230,933]
gi|257825701|gb|EEV52327.1| NAD-dependent DNA ligase [Enterococcus faecium 1,231,410]
gi|257830732|gb|EEV57339.1| NAD-dependent DNA ligase [Enterococcus faecium 1,231,408]
Length = 678
Score = 91.1 bits (225), Expect = 4e-17, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 30/66 (45%)
Query: 53 SLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDH 112
++ EA E L + YY D P D +YD+ L A++EQ+P+L D
Sbjct: 4 EMTIDEAAKRAEELRTRLNQWSREYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITSDS 63
Query: 113 PWNTVG 118
P VG
Sbjct: 64 PTQRVG 69
>gi|293571852|ref|ZP_06682868.1| DNA ligase, NAD-dependent [Enterococcus faecium E980]
gi|291608106|gb|EFF37412.1| DNA ligase, NAD-dependent [Enterococcus faecium E980]
Length = 679
Score = 91.1 bits (225), Expect = 4e-17, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 30/66 (45%)
Query: 53 SLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDH 112
++ EA E L + YY D P D +YD+ L A++EQ+P+L D
Sbjct: 5 EMTIDEAAKRAEELRTRLNQWSREYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITSDS 64
Query: 113 PWNTVG 118
P VG
Sbjct: 65 PTQRVG 70
>gi|227551668|ref|ZP_03981717.1| DNA ligase (NAD(+)) [Enterococcus faecium TX1330]
gi|293377659|ref|ZP_06623848.1| DNA ligase (NAD(+)) [Enterococcus faecium PC4.1]
gi|227179231|gb|EEI60203.1| DNA ligase (NAD(+)) [Enterococcus faecium TX1330]
gi|292643659|gb|EFF61780.1| DNA ligase (NAD(+)) [Enterococcus faecium PC4.1]
Length = 679
Score = 91.1 bits (225), Expect = 4e-17, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 30/66 (45%)
Query: 53 SLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDH 112
++ EA E L + YY D P D +YD+ L A++EQ+P+L D
Sbjct: 5 EMTIDEAAKRAEELRTRLNQWSREYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITSDS 64
Query: 113 PWNTVG 118
P VG
Sbjct: 65 PTQRVG 70
>gi|293557127|ref|ZP_06675681.1| DNA ligase, NAD-dependent [Enterococcus faecium E1039]
gi|294614139|ref|ZP_06694060.1| DNA ligase, NAD-dependent [Enterococcus faecium E1636]
gi|291592989|gb|EFF24577.1| DNA ligase, NAD-dependent [Enterococcus faecium E1636]
gi|291600696|gb|EFF30994.1| DNA ligase, NAD-dependent [Enterococcus faecium E1039]
Length = 679
Score = 91.1 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 30/66 (45%)
Query: 53 SLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDH 112
++ EA E L + YY D P D +YD+ L A++EQ+P+L D
Sbjct: 5 EMTIDEAAKRAEELRTRLNQWSREYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITSDS 64
Query: 113 PWNTVG 118
P VG
Sbjct: 65 PTQRVG 70
>gi|257895732|ref|ZP_05675385.1| NAD-dependent DNA ligase [Enterococcus faecium Com12]
gi|257832297|gb|EEV58718.1| NAD-dependent DNA ligase [Enterococcus faecium Com12]
Length = 678
Score = 91.1 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 30/66 (45%)
Query: 53 SLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDH 112
++ EA E L + YY D P D +YD+ L A++EQ+P+L D
Sbjct: 4 EMTIDEAAKRAEELRTRLNQWSREYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITSDS 63
Query: 113 PWNTVG 118
P VG
Sbjct: 64 PTQRVG 69
>gi|241759788|ref|ZP_04757888.1| DNA ligase, NAD-dependent [Neisseria flavescens SK114]
gi|241319796|gb|EER56192.1| DNA ligase, NAD-dependent [Neisseria flavescens SK114]
Length = 859
Score = 91.1 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 28/59 (47%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++YL + + YY LD P D YD++ L+AL+ PEL D P VG
Sbjct: 42 AQRIKYLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALELNHPELKLPDSPTQRVG 100
>gi|261380488|ref|ZP_05985061.1| DNA ligase, NAD-dependent [Neisseria subflava NJ9703]
gi|284796739|gb|EFC52086.1| DNA ligase, NAD-dependent [Neisseria subflava NJ9703]
Length = 822
Score = 91.1 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 28/59 (47%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++YL + + YY LD P D YD++ L+AL+ PEL D P VG
Sbjct: 5 AQRIKYLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALELNHPELKLPDSPTQRVG 63
>gi|257884412|ref|ZP_05664065.1| NAD-dependent DNA ligase [Enterococcus faecium 1,231,501]
gi|257898303|ref|ZP_05677956.1| NAD-dependent DNA ligase [Enterococcus faecium Com15]
gi|257820250|gb|EEV47398.1| NAD-dependent DNA ligase [Enterococcus faecium 1,231,501]
gi|257836215|gb|EEV61289.1| NAD-dependent DNA ligase [Enterococcus faecium Com15]
Length = 678
Score = 91.1 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 30/66 (45%)
Query: 53 SLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDH 112
++ EA E L + YY D P D +YD+ L A++EQ+P+L D
Sbjct: 4 EMTIDEAAKRAEELRTRLNQWSREYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITSDS 63
Query: 113 PWNTVG 118
P VG
Sbjct: 64 PTQRVG 69
>gi|257887196|ref|ZP_05666849.1| NAD-dependent DNA ligase [Enterococcus faecium 1,141,733]
gi|257823250|gb|EEV50182.1| NAD-dependent DNA ligase [Enterococcus faecium 1,141,733]
Length = 678
Score = 91.1 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 30/66 (45%)
Query: 53 SLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDH 112
++ EA E L + YY D P D +YD+ L A++EQ+P+L D
Sbjct: 4 EMTIDEAAKRAEELRTRLNQWSREYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITSDS 63
Query: 113 PWNTVG 118
P VG
Sbjct: 64 PTQRVG 69
>gi|261401085|ref|ZP_05987210.1| DNA ligase, NAD-dependent [Neisseria lactamica ATCC 23970]
gi|269208977|gb|EEZ75432.1| DNA ligase, NAD-dependent [Neisseria lactamica ATCC 23970]
Length = 827
Score = 91.1 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 26/59 (44%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L + + YY LD P D YDR+ L+AL+ PEL D P VG
Sbjct: 13 AQRIHELTDLLNRYAYEYYTLDAPSVPDAEYDRLFRELEALELNHPELKLPDSPTQRVG 71
>gi|34540958|ref|NP_905437.1| DNA ligase, NAD-dependent [Porphyromonas gingivalis W83]
gi|81417286|sp|Q7MV47|DNLJ_PORGI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|34397273|gb|AAQ66336.1| DNA ligase, NAD-dependent [Porphyromonas gingivalis W83]
Length = 669
Score = 91.1 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 32/59 (54%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ +E L +I H+ YY L +P D YD + ++L+ L+ ++PE D P + VG
Sbjct: 8 AVRIEELRRILREHEYRYYVLSSPTIDDFEYDAMMKQLEELEREYPEWDSPDSPTHRVG 66
>gi|188995252|ref|YP_001929504.1| DNA ligase [Porphyromonas gingivalis ATCC 33277]
gi|254781390|sp|B2RKL2|DNLJ_PORG3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|188594932|dbj|BAG33907.1| DNA ligase [Porphyromonas gingivalis ATCC 33277]
Length = 669
Score = 91.1 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 32/59 (54%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ +E L +I H+ YY L +P D YD + ++L+ L+ ++PE D P + VG
Sbjct: 8 AVRIEELRRILREHEYRYYVLSSPTIDDFEYDAMMKQLEELEREYPEWDSPDSPTHRVG 66
>gi|221066629|ref|ZP_03542734.1| DNA ligase, NAD-dependent [Comamonas testosteroni KF-1]
gi|220711652|gb|EED67020.1| DNA ligase, NAD-dependent [Comamonas testosteroni KF-1]
Length = 708
Score = 91.1 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 27/57 (47%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+V L YY LD P DG YDRV ++L+AL+ +P L D P V
Sbjct: 31 SKVAALRAQLWQWAHEYYVLDAPTVPDGEYDRVYQQLEALEGAYPALVTPDSPTQRV 87
>gi|302522063|ref|ZP_07274405.1| DNA ligase, NAD-dependent [Streptomyces sp. SPB78]
gi|302430958|gb|EFL02774.1| DNA ligase, NAD-dependent [Streptomyces sp. SPB78]
Length = 783
Score = 91.1 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
+ E + + + H+ YY D P+ +D +D + RL AL+E+ P+L D P
Sbjct: 33 PADVREEHDGIAREVDEHRYRYYVNDQPVVSDAQFDELLRRLTALEEEHPQLRTPDSPTQ 92
Query: 116 TV 117
V
Sbjct: 93 KV 94
>gi|152974127|ref|YP_001373644.1| NAD-dependent DNA ligase LigA [Bacillus cereus subsp. cytotoxis NVH
391-98]
gi|190359228|sp|A7GKJ1|DNLJ_BACCN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|152022879|gb|ABS20649.1| DNA ligase, NAD-dependent [Bacillus cytotoxicus NVH 391-98]
Length = 669
Score = 91.1 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 30/65 (46%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK +E L + Y+ LDNP +D YDR + L L+ + PE ED P
Sbjct: 1 MSKEAVQQRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLETENPEFITEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SVRVG 65
>gi|313668860|ref|YP_004049144.1| DNA ligase [Neisseria lactamica ST-640]
gi|313006322|emb|CBN87785.1| putative DNA ligase [Neisseria lactamica 020-06]
Length = 827
Score = 91.1 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 26/59 (44%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L + + YY LD P D YD++ L+AL+ PEL D P VG
Sbjct: 13 AQRIHELTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALELNHPELKLPDSPTQRVG 71
>gi|238855396|ref|ZP_04645707.1| DNA ligase, NAD-dependent [Lactobacillus jensenii 269-3]
gi|260665363|ref|ZP_05866211.1| DNA ligase, NAD-dependent [Lactobacillus jensenii SJ-7A-US]
gi|282932093|ref|ZP_06337550.1| DNA ligase (NAD(+)) [Lactobacillus jensenii 208-1]
gi|238831994|gb|EEQ24320.1| DNA ligase, NAD-dependent [Lactobacillus jensenii 269-3]
gi|260560867|gb|EEX26843.1| DNA ligase, NAD-dependent [Lactobacillus jensenii SJ-7A-US]
gi|281303772|gb|EFA95917.1| DNA ligase (NAD(+)) [Lactobacillus jensenii 208-1]
Length = 669
Score = 91.1 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 34/68 (50%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
+ L+K A E+E L K + YY D P D +YD+ +RL L++QFPEL
Sbjct: 1 MAKLNKKAAQEEIENLRKKLNTWAEQYYAQDAPSVEDAVYDQNYQRLVELEKQFPELVTS 60
Query: 111 DHPWNTVG 118
D VG
Sbjct: 61 DSITQRVG 68
>gi|322373465|ref|ZP_08048001.1| DNA ligase, NAD-dependent [Streptococcus sp. C150]
gi|321278507|gb|EFX55576.1| DNA ligase, NAD-dependent [Streptococcus sp. C150]
Length = 652
Score = 91.1 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 30/59 (50%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ LV + K YY DNP +D YD++ L AL+ + PEL D P + VG
Sbjct: 2 EKRMKELVAKLNQYAKEYYTEDNPSVSDAEYDKLYRELVALEAEHPELVQADSPTHRVG 60
>gi|254514186|ref|ZP_05126247.1| DNA ligase, NAD-dependent [gamma proteobacterium NOR5-3]
gi|219676429|gb|EED32794.1| DNA ligase, NAD-dependent [gamma proteobacterium NOR5-3]
Length = 675
Score = 91.1 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 25/63 (39%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
+G+ V L + YY LD P D YD L L+ + PEL D P
Sbjct: 4 RGDIKARVVALREQLERWNHQYYVLDEPTVPDQDYDAALRELQKLETEHPELQDPSSPTQ 63
Query: 116 TVG 118
VG
Sbjct: 64 RVG 66
>gi|332977611|gb|EGK14379.1| NAD-dependent DNA ligase LigA [Psychrobacter sp. 1501(2011)]
Length = 695
Score = 90.7 bits (224), Expect = 5e-17, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 42 ESWLDKAKKVTSLSKGE--AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDA 99
+S K + SL++ + + ++ L+ H YY +D P +D YD++ L
Sbjct: 8 QSQTTKMNAIKSLNQEQQDIVAKMRTLITEVRKHNNAYYVMDEPTISDNEYDQLRLSLIE 67
Query: 100 LQEQFPELFDEDHPWNTVG 118
L+E++P+L D P +VG
Sbjct: 68 LEERYPDLTQSDSPTASVG 86
>gi|309378943|emb|CBX22396.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 827
Score = 90.7 bits (224), Expect = 5e-17, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 26/59 (44%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L + + YY LD P D YD++ L+AL+ PEL D P VG
Sbjct: 13 AQRIHELTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALELNHPELKLPDSPTQRVG 71
>gi|332519658|ref|ZP_08396122.1| DNA ligase, NAD-dependent [Lacinutrix algicola 5H-3-7-4]
gi|332044217|gb|EGI80411.1| DNA ligase, NAD-dependent [Lacinutrix algicola 5H-3-7-4]
Length = 665
Score = 90.7 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 30/59 (50%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E+E L + H YY LDNP +D +D + L AL+E PE FD + P VG
Sbjct: 4 KQEIEQLRQELREHNYNYYVLDNPTISDYDFDIKLKELQALEEAHPEFFDANSPTLRVG 62
>gi|298492390|ref|YP_003722567.1| DNA ligase, NAD-dependent ['Nostoc azollae' 0708]
gi|298234308|gb|ADI65444.1| DNA ligase, NAD-dependent ['Nostoc azollae' 0708]
Length = 684
Score = 90.7 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 26/56 (46%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
V L + YY LD P+ D +YDR+ L L+ Q+P L D P VG
Sbjct: 11 VRELRLLLQQASYAYYVLDAPVMEDMVYDRLYRELQELETQYPYLVTPDSPTQRVG 66
>gi|257882881|ref|ZP_05662534.1| NAD-dependent DNA ligase [Enterococcus faecium 1,231,502]
gi|257818539|gb|EEV45867.1| NAD-dependent DNA ligase [Enterococcus faecium 1,231,502]
Length = 674
Score = 90.7 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 30/65 (46%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ EA E L + YY D P D +YD+ L A++EQ+P+L D P
Sbjct: 1 MTIDEAAKRAEELRTRLNQWSREYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLITSDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|15965917|ref|NP_386270.1| NAD-dependent DNA ligase LigA [Sinorhizobium meliloti 1021]
gi|307308227|ref|ZP_07587936.1| DNA ligase, NAD-dependent [Sinorhizobium meliloti BL225C]
gi|307319694|ref|ZP_07599119.1| DNA ligase, NAD-dependent [Sinorhizobium meliloti AK83]
gi|81634276|sp|Q92NM8|DNLJ_RHIME RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|15075186|emb|CAC46743.1| Probable DNA ligase [Sinorhizobium meliloti 1021]
gi|306894625|gb|EFN25386.1| DNA ligase, NAD-dependent [Sinorhizobium meliloti AK83]
gi|306901225|gb|EFN31831.1| DNA ligase, NAD-dependent [Sinorhizobium meliloti BL225C]
Length = 717
Score = 90.7 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 38/74 (51%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
L++ K V L++ EA E+ +L H Y+ D P +D YD + R D ++E+F
Sbjct: 2 LNQRKSVEQLNEAEAAEELAFLAAELARHDMLYHGKDAPEISDADYDALKRRNDLIEERF 61
Query: 105 PELFDEDHPWNTVG 118
P L ED P VG
Sbjct: 62 PVLVREDSPSRKVG 75
>gi|90579891|ref|ZP_01235699.1| DNA ligase [Vibrio angustum S14]
gi|90438776|gb|EAS63959.1| DNA ligase [Vibrio angustum S14]
Length = 670
Score = 90.7 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+H YY DNP D YDR+ ++L ++ PE D P VG
Sbjct: 18 YHGHRYYVEDNPEIPDAEYDRMMQQLIKIEADHPEWITVDSPSQRVG 64
>gi|229587074|ref|YP_002845575.1| NAD-dependent DNA ligase LigA [Rickettsia africae ESF-5]
gi|254781406|sp|C3PLJ2|DNLJ_RICAE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|228022124|gb|ACP53832.1| DNA ligase, NAD-dependent [Rickettsia africae ESF-5]
Length = 689
Score = 90.7 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 34/69 (49%)
Query: 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
+ +S+ EA +E L + YY DNPL +D YD++ L+++FP L
Sbjct: 3 NIDLISEEEAQKLLEELADKIAAYNHAYYIEDNPLVSDSEYDQLFNTNLKLEQKFPHLIL 62
Query: 110 EDHPWNTVG 118
E+ P VG
Sbjct: 63 ENSPSKKVG 71
>gi|300173629|ref|YP_003772795.1| DNA ligase, NAD-dependent [Leuconostoc gasicomitatum LMG 18811]
gi|299888008|emb|CBL91976.1| DNA ligase, NAD-dependent [Leuconostoc gasicomitatum LMG 18811]
Length = 681
Score = 90.7 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 35/74 (47%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
L + K + LS+ A E+ L + YY D P+ D +YD + RL AL+ F
Sbjct: 2 LPELKPIEKLSREAAQHEIAKLQDDLRQYGIAYYEQDAPIVEDYIYDALYARLVALETVF 61
Query: 105 PELFDEDHPWNTVG 118
P+ + D P VG
Sbjct: 62 PQFINPDSPTQNVG 75
>gi|56966057|pdb|1TA8|A Chain A, Structural Rearrangement Accompanying Nad+ Synthesis
Within A Bacterial Dna Ligase Crystal
Length = 332
Score = 90.7 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 30/65 (46%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
L+ A + L K + YY D P D +YDR+ + L ++ +FP+L D P
Sbjct: 6 LTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLITPDSP 65
Query: 114 WNTVG 118
VG
Sbjct: 66 TQRVG 70
>gi|241764431|ref|ZP_04762455.1| DNA ligase, NAD-dependent [Acidovorax delafieldii 2AN]
gi|241366173|gb|EER60750.1| DNA ligase, NAD-dependent [Acidovorax delafieldii 2AN]
Length = 697
Score = 90.7 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S +A + L YY +D P D YD V L AL+ P+L D P
Sbjct: 11 SLAQAA---DALRARLNLWAHQYYVMDEPTVPDAEYDSVFRELQALETAHPDLITPDSPT 67
Query: 115 NTV 117
V
Sbjct: 68 QRV 70
>gi|256826919|ref|YP_003150878.1| DNA ligase, NAD-dependent [Cryptobacterium curtum DSM 15641]
gi|256583062|gb|ACU94196.1| DNA ligase, NAD-dependent [Cryptobacterium curtum DSM 15641]
Length = 725
Score = 90.7 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 46 DKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFP 105
D A T + + +E L + H+ YY D P +D +D + L L+ + P
Sbjct: 3 DDATP-TLFDQDDVGARIEALRREIEHNSWLYYAQDAPAISDAAFDSLMRELRQLEAEHP 61
Query: 106 ELFDEDHPWNTVG 118
E +D P VG
Sbjct: 62 EFYDPTSPTQRVG 74
>gi|220912112|ref|YP_002487421.1| DNA ligase, NAD-dependent [Arthrobacter chlorophenolicus A6]
gi|254778146|sp|B8HFJ3|DNLJ1_ARTCA RecName: Full=DNA ligase 1; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] 1
gi|219858990|gb|ACL39332.1| DNA ligase, NAD-dependent [Arthrobacter chlorophenolicus A6]
Length = 770
Score = 90.7 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 31/67 (46%)
Query: 52 TSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
S+ E E L + ++ YY+ D PL +D +D + RL+ ++ PEL D
Sbjct: 22 ESIPSDAIREEYENLSDLIRKYRFAYYQDDAPLVSDAEFDTLFRRLEEIEALHPELVAND 81
Query: 112 HPWNTVG 118
P VG
Sbjct: 82 SPTQEVG 88
>gi|313203539|ref|YP_004042196.1| DNA ligase, nad-dependent [Paludibacter propionicigenes WB4]
gi|312442855|gb|ADQ79211.1| DNA ligase, NAD-dependent [Paludibacter propionicigenes WB4]
Length = 676
Score = 90.7 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 25/60 (41%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++E L + H YY P +D +D +L L+ PE FD + P VG
Sbjct: 2 IKDQIESLRRELEQHNYNYYVKSAPTISDFEFDAKLRQLQELEAAHPEFFDPNSPTQRVG 61
>gi|294506892|ref|YP_003570950.1| NAD-dependent DNA ligase [Salinibacter ruber M8]
gi|294343220|emb|CBH23998.1| NAD-dependent DNA ligase [Salinibacter ruber M8]
Length = 691
Score = 90.7 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 70 ALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH YY LD P+ +D YDR+ ++L L+ ++P L D P + VG
Sbjct: 32 LRHHNYRYYVLDAPVVSDAEYDRLFQQLQTLEAEYPGLQTPDSPTHQVG 80
>gi|261377933|ref|ZP_05982506.1| DNA ligase, NAD-dependent [Neisseria cinerea ATCC 14685]
gi|269145793|gb|EEZ72211.1| DNA ligase, NAD-dependent [Neisseria cinerea ATCC 14685]
Length = 831
Score = 90.7 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 26/56 (46%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L + + YY LD P D YD++ L+AL+ PEL D P VG
Sbjct: 8 IRRLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALELNHPELKLPDSPTQRVG 63
>gi|254283004|ref|ZP_04957972.1| DNA ligase, NAD-dependent [gamma proteobacterium NOR51-B]
gi|219679207|gb|EED35556.1| DNA ligase, NAD-dependent [gamma proteobacterium NOR51-B]
Length = 675
Score = 90.7 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 24/59 (40%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ EV L + YY+ D P D YD RL L+ PEL D P VG
Sbjct: 6 VAEVAELRERIKRWALEYYQQDAPSVPDADYDAAFRRLHELESAHPELASPDSPTRRVG 64
>gi|94984803|ref|YP_604167.1| DNA ligase, NAD-dependent [Deinococcus geothermalis DSM 11300]
gi|122986680|sp|Q1J0I6|DNLJ_DEIGD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|94555084|gb|ABF44998.1| DNA ligase, NAD-dependent [Deinococcus geothermalis DSM 11300]
Length = 684
Score = 90.7 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 25/53 (47%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L H + YY LD P D YDR+ L AL+ PE E+ P TVG
Sbjct: 27 LRAEIERHNRAYYELDAPEIPDDEYDRLVRELRALEAAHPEWVAENSPAQTVG 79
>gi|310826558|ref|YP_003958915.1| DNA ligase [Eubacterium limosum KIST612]
gi|308738292|gb|ADO35952.1| DNA ligase [Eubacterium limosum KIST612]
Length = 666
Score = 90.3 bits (223), Expect = 7e-17, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 29/62 (46%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+A ++ L K + YY D P+ D YDR+ + L +L+ +P+ D P
Sbjct: 6 KQAEAKISQLKKQIEENNVRYYDKDAPVIPDYAYDRMMQELISLETAYPQFLTSDSPSQR 65
Query: 117 VG 118
VG
Sbjct: 66 VG 67
>gi|317056400|ref|YP_004104867.1| DNA ligase, NAD-dependent [Ruminococcus albus 7]
gi|315448669|gb|ADU22233.1| DNA ligase, NAD-dependent [Ruminococcus albus 7]
Length = 659
Score = 90.3 bits (223), Expect = 7e-17, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 30/63 (47%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
K A ++ LV+I +H + YY D +D YD + L L+ P+L +D P
Sbjct: 4 KESAKKRIDELVEILNYHSRLYYVEDRNEISDYEYDMLQNELKKLEAANPDLIRKDSPTQ 63
Query: 116 TVG 118
VG
Sbjct: 64 RVG 66
>gi|296140594|ref|YP_003647837.1| DNA ligase, NAD-dependent [Tsukamurella paurometabola DSM 20162]
gi|296028728|gb|ADG79498.1| DNA ligase, NAD-dependent [Tsukamurella paurometabola DSM 20162]
Length = 688
Score = 90.3 bits (223), Expect = 7e-17, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 52 TSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
L++ + + L + HQ YY D P+ +DG +D + +RL A+++ FPEL D
Sbjct: 3 KELTEDDRRA-WQELAEEVRGHQFRYYVQDAPVLSDGEFDALLKRLQAMEDAFPELAVPD 61
Query: 112 HPWNTVG 118
P VG
Sbjct: 62 SPTKLVG 68
>gi|319787332|ref|YP_004146807.1| DNA ligase, NAD-dependent [Pseudoxanthomonas suwonensis 11-1]
gi|317465844|gb|ADV27576.1| DNA ligase, NAD-dependent [Pseudoxanthomonas suwonensis 11-1]
Length = 788
Score = 90.3 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 27/59 (45%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L + + Y+ LD P TD YD + L+AL+ + PEL ED P VG
Sbjct: 8 ADRAAELRRRIEDANRRYHELDAPDITDAQYDALVRELEALEREHPELAAEDSPTRRVG 66
>gi|225075650|ref|ZP_03718849.1| hypothetical protein NEIFLAOT_00666 [Neisseria flavescens
NRL30031/H210]
gi|224953072|gb|EEG34281.1| hypothetical protein NEIFLAOT_00666 [Neisseria flavescens
NRL30031/H210]
Length = 822
Score = 90.3 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 28/59 (47%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++YL + + YY LD P D YD++ L+AL+ PEL D P VG
Sbjct: 5 AQRIQYLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALELNHPELKLPDSPTQRVG 63
>gi|205372454|ref|ZP_03225267.1| NAD-dependent DNA ligase LigA [Bacillus coahuilensis m4-4]
Length = 635
Score = 90.3 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + A V+ L + YY LD P +D YD + L A++++FPEL D P
Sbjct: 1 MERQFAEERVKELHQTLNEWNYAYYVLDKPQVSDQEYDSKLQELIAIEQEFPELKTPDSP 60
Query: 114 WNTVG 118
+G
Sbjct: 61 SERIG 65
>gi|116329438|ref|YP_799158.1| DNA ligase [Leptospira borgpetersenii serovar Hardjo-bovis L550]
gi|122282782|sp|Q04XH0|DNLJ_LEPBL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|116122182|gb|ABJ80225.1| DNA ligase (NAD+) (contains BRCT domain type II) [Leptospira
borgpetersenii serovar Hardjo-bovis L550]
Length = 681
Score = 90.3 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 45 LDKAKKV--TSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQE 102
+ K KK +LS+ EA + L HHQ YY + P +D +D++ +RL L+E
Sbjct: 1 MSKKKKTYQNTLSEKEAKKVIAKLADEIRHHQYLYYVKNQPEISDFDFDQLFKRLRDLEE 60
Query: 103 QFPELFDEDHPWNTVG 118
+FP+ D + P VG
Sbjct: 61 EFPQFKDLNSPTLVVG 76
>gi|116329958|ref|YP_799676.1| DNA ligase (NAD+) [Leptospira borgpetersenii serovar Hardjo-bovis
JB197]
gi|122282269|sp|Q04W02|DNLJ_LEPBJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|116123647|gb|ABJ74918.1| DNA ligase (NAD+) [Leptospira borgpetersenii serovar Hardjo-bovis
JB197]
Length = 681
Score = 90.3 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 45 LDKAKKV--TSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQE 102
+ K KK +LS+ EA + L HHQ YY + P +D +D++ +RL L+E
Sbjct: 1 MSKKKKTYQNTLSEKEAKKVIAKLADEIRHHQYLYYVKNQPEISDFDFDQLFKRLRDLEE 60
Query: 103 QFPELFDEDHPWNTVG 118
+FP+ D + P VG
Sbjct: 61 EFPQFKDLNSPTLVVG 76
>gi|315223028|ref|ZP_07864907.1| DNA ligase, NAD-dependent [Streptococcus anginosus F0211]
gi|315187978|gb|EFU21714.1| DNA ligase, NAD-dependent [Streptococcus anginosus F0211]
Length = 652
Score = 90.3 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 31/59 (52%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LVK+ + YY DNP +D YDR+ L L++Q+PEL D P + VG
Sbjct: 2 KDRMLELVKLLNQYAHEYYTTDNPTVSDSEYDRLYHELLDLEQQYPELVQADSPTHRVG 60
>gi|56966058|pdb|1TAE|A Chain A, Structural Rearrangement Accompanying Nad+ Synthesis
Within A Bacterial Dna Ligase Crystal
gi|56966059|pdb|1TAE|B Chain B, Structural Rearrangement Accompanying Nad+ Synthesis
Within A Bacterial Dna Ligase Crystal
gi|56966060|pdb|1TAE|C Chain C, Structural Rearrangement Accompanying Nad+ Synthesis
Within A Bacterial Dna Ligase Crystal
gi|56966061|pdb|1TAE|D Chain D, Structural Rearrangement Accompanying Nad+ Synthesis
Within A Bacterial Dna Ligase Crystal
gi|212374930|pdb|3BA8|A Chain A, Structural Basis For The Inhibition Of Bacterial Nad+
Dependent Dna Ligase
gi|212374931|pdb|3BA9|A Chain A, Structural Basis For Inhbition Of Nad-Dependent Ligase
gi|212374932|pdb|3BAA|A Chain A, Structural Basis For The Inhibition Of Bacterial Nad+
Dependent Dna Ligase
gi|212374933|pdb|3BAB|A Chain A, Structural Basis For The Inhibition Of Bacterial Nad+
Dependent Dna Ligase
Length = 332
Score = 90.3 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 30/65 (46%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
L+ A + L K + YY D P D +YDR+ + L ++ +FP+L D P
Sbjct: 6 LTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLITPDSP 65
Query: 114 WNTVG 118
VG
Sbjct: 66 TQRVG 70
>gi|302524940|ref|ZP_07277282.1| DNA ligase, NAD-dependent [Streptomyces sp. AA4]
gi|302433835|gb|EFL05651.1| DNA ligase, NAD-dependent [Streptomyces sp. AA4]
Length = 707
Score = 90.3 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
++ A+ VT + + L + HQ YY LD+P+ +DG +D + L +++++
Sbjct: 1 MEAAQDVTDV-PADVRERHGALAEEIRGHQFRYYVLDSPIISDGQFDALLGDLQKIEDEY 59
Query: 105 PELFDEDHPWNTVG 118
P L D P VG
Sbjct: 60 PALVTPDSPTQNVG 73
>gi|238650378|ref|YP_002916230.1| NAD-dependent DNA ligase LigA [Rickettsia peacockii str. Rustic]
gi|257096313|sp|C4K0T1|DNLJ_RICPU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|238624476|gb|ACR47182.1| NAD-dependent DNA ligase LigA [Rickettsia peacockii str. Rustic]
Length = 689
Score = 90.3 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 34/69 (49%)
Query: 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
+ +S+ EA +E L + YY DNPL +D YD++ L+++FP L
Sbjct: 3 NIDLISEEEAQKLLEELADKIAAYNHAYYIEDNPLVSDSEYDQLFNTNLKLEQKFPHLIL 62
Query: 110 EDHPWNTVG 118
E+ P VG
Sbjct: 63 ENSPSKKVG 71
>gi|15893019|ref|NP_360733.1| NAD-dependent DNA ligase LigA [Rickettsia conorii str. Malish 7]
gi|81527939|sp|Q92GM7|DNLJ_RICCN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|15620219|gb|AAL03634.1| DNA ligase [Rickettsia conorii str. Malish 7]
Length = 689
Score = 90.3 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 34/69 (49%)
Query: 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
+ +S+ EA +E L + YY DNPL +D YD++ L+++FP L
Sbjct: 3 NIDLISEEEAQKLLEELADKIAAYNHAYYIEDNPLVSDSEYDQLFNTNLKLEQKFPHLIL 62
Query: 110 EDHPWNTVG 118
E+ P VG
Sbjct: 63 ENSPSKKVG 71
>gi|326693831|ref|ZP_08230836.1| DNA ligase, NAD-dependent [Leuconostoc argentinum KCTC 3773]
Length = 681
Score = 90.3 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 33/74 (44%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
L + + LS A EV L + YY D PL D +YD + RL AL+ F
Sbjct: 2 LPEFTPIEQLSTSAAQQEVAQLQADLTEYGVAYYEQDAPLVEDHVYDALYARLVALESAF 61
Query: 105 PELFDEDHPWNTVG 118
P+ +D P VG
Sbjct: 62 PQFVTQDSPTQNVG 75
>gi|332558050|ref|ZP_08412372.1| DNA ligase [Rhodobacter sphaeroides WS8N]
gi|332275762|gb|EGJ21077.1| DNA ligase [Rhodobacter sphaeroides WS8N]
Length = 704
Score = 90.3 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 36/74 (48%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
+ + V L++ EA E+ L + Y+ D P +D YD + R A++EQF
Sbjct: 1 MQDERPVDQLTEAEAAAELARLAEAIEAANTAYHTHDAPQISDADYDALKLRNRAIEEQF 60
Query: 105 PELFDEDHPWNTVG 118
PEL D P + VG
Sbjct: 61 PELRRSDSPSDRVG 74
>gi|259047691|ref|ZP_05738092.1| DNA ligase, NAD-dependent [Granulicatella adiacens ATCC 49175]
gi|259035882|gb|EEW37137.1| DNA ligase, NAD-dependent [Granulicatella adiacens ATCC 49175]
Length = 668
Score = 90.3 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 25/60 (41%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+E L + YY D P TD YD+ L AL+++ PE D P VG
Sbjct: 7 IQQRIEQLKEQLNRWSHEYYVEDKPTATDAEYDKAYHELLALEKEHPEFVTADSPTQRVG 66
>gi|224826983|ref|ZP_03700081.1| DNA ligase, NAD-dependent [Lutiella nitroferrum 2002]
gi|224600816|gb|EEG07001.1| DNA ligase, NAD-dependent [Lutiella nitroferrum 2002]
Length = 815
Score = 90.3 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 31/63 (49%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
+ +A+ + LV + + + YY D P D YDR+ L+AL+ PEL D P
Sbjct: 11 REQAVQRIAELVPLLNRYSREYYERDEPTVPDVEYDRLYRELEALEAAHPELRRADSPTL 70
Query: 116 TVG 118
VG
Sbjct: 71 RVG 73
>gi|225022751|ref|ZP_03711943.1| hypothetical protein CORMATOL_02796 [Corynebacterium matruchotii
ATCC 33806]
gi|224944472|gb|EEG25681.1| hypothetical protein CORMATOL_02796 [Corynebacterium matruchotii
ATCC 33806]
Length = 699
Score = 90.3 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Query: 49 KKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF 108
+ E E + L H++ YY P TD +D + ++L+AL+ PEL
Sbjct: 4 TPAETTDTQEIHQEWQRLASEVTRHRELYYNQ-TPEITDAEFDALFKKLEALEADHPELA 62
Query: 109 DEDHPWNTVG 118
D P VG
Sbjct: 63 TPDSPTQQVG 72
>gi|157828943|ref|YP_001495185.1| NAD-dependent DNA ligase LigA [Rickettsia rickettsii str. 'Sheila
Smith']
gi|165933668|ref|YP_001650457.1| NAD-dependent DNA ligase LigA [Rickettsia rickettsii str. Iowa]
gi|166216235|sp|A8GTF2|DNLJ_RICRS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|190359278|sp|B0BUZ1|DNLJ_RICRO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|157801424|gb|ABV76677.1| NAD-dependent DNA ligase LigA [Rickettsia rickettsii str. 'Sheila
Smith']
gi|165908755|gb|ABY73051.1| NAD-dependent DNA ligase [Rickettsia rickettsii str. Iowa]
Length = 689
Score = 90.3 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 34/69 (49%)
Query: 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
+ +S+ EA +E L + YY DNPL +D YD++ L+++FP L
Sbjct: 3 NIDLISEEEAQKLLEELADKIAAYNHAYYIEDNPLVSDSEYDQLFNTNLKLEQKFPHLIL 62
Query: 110 EDHPWNTVG 118
E+ P VG
Sbjct: 63 ENSPSKKVG 71
>gi|34581289|ref|ZP_00142769.1| DNA ligase [Rickettsia sibirica 246]
gi|28262674|gb|EAA26178.1| DNA ligase [Rickettsia sibirica 246]
Length = 689
Score = 90.3 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 34/69 (49%)
Query: 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
+ +S+ EA +E L + YY DNPL +D YD++ L+++FP L
Sbjct: 3 NIDLISEEEAQKLLEELADKIAAYNHAYYIEDNPLVSDSEYDQLFNTNLKLEQKFPHLIL 62
Query: 110 EDHPWNTVG 118
E+ P VG
Sbjct: 63 ENSPSKKVG 71
>gi|50364975|ref|YP_053400.1| DNA ligase, polydeoxyribonucleotide synthase NAD+ [Mesoplasma
florum L1]
gi|81391966|sp|Q6F1V7|DNLJ_MESFL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|50363531|gb|AAT75516.1| DNA ligase, polydeoxyribonucleotide synthase NAD+ [Mesoplasma
florum L1]
Length = 666
Score = 90.3 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 30/65 (46%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++K +A + L K YY LDNP D YD+ +L L+ QFPEL D
Sbjct: 1 MTKEQASKLINDLRLKLNEWAKEYYVLDNPSVDDAEYDKTIHQLLDLENQFPELITSDSI 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQKVG 65
>gi|78188256|ref|YP_378594.1| NAD-dependent DNA ligase [Chlorobium chlorochromatii CaD3]
gi|123743484|sp|Q3ATX4|DNLJ_CHLCH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|78170455|gb|ABB27551.1| NAD-dependent DNA ligase [Chlorobium chlorochromatii CaD3]
Length = 667
Score = 90.3 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ +A + L + H Y+ P +D +D++ E L AL+ +FP+L D P
Sbjct: 1 MTIIDASERIAQLRQEIERHNYLYFNEAKPELSDYEFDKLLEELMALEREFPDLLTPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SQRVG 65
>gi|196234149|ref|ZP_03132982.1| DNA ligase (NAD(+)) [Chthoniobacter flavus Ellin428]
gi|196221800|gb|EDY16337.1| DNA ligase (NAD(+)) [Chthoniobacter flavus Ellin428]
Length = 122
Score = 90.3 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 24/60 (40%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+E L + H + YY P +D YD + L L++ PE D P VG
Sbjct: 4 VQTRIEELRQQLEEHNRRYYDEATPTISDADYDALFRELRDLEDAHPEFITPDSPTRRVG 63
>gi|75759916|ref|ZP_00739987.1| NAD-dependent DNA ligase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|228899023|ref|ZP_04063296.1| DNA ligase [Bacillus thuringiensis IBL 4222]
gi|74492583|gb|EAO55728.1| NAD-dependent DNA ligase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|228860598|gb|EEN04985.1| DNA ligase [Bacillus thuringiensis IBL 4222]
Length = 669
Score = 90.3 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK A +E L + Y+ LDNP +D YDR + L L+ + PE ED P
Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIELEAENPEFMSEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SVRVG 65
>gi|217077826|ref|YP_002335544.1| DNA ligase, NAD-dependent [Thermosipho africanus TCF52B]
gi|254781437|sp|B7IDX6|DNLJ_THEAB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|217037681|gb|ACJ76203.1| DNA ligase, NAD-dependent [Thermosipho africanus TCF52B]
Length = 665
Score = 90.3 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L + +H YY L +P+ +D YD++ ++L L++++PE + P VG
Sbjct: 13 LREEIEYHNYRYYVLADPVISDEEYDKLLKKLIELEKKYPEFYSPTSPTQKVG 65
>gi|332686164|ref|YP_004455938.1| DNA ligase [Melissococcus plutonius ATCC 35311]
gi|332370173|dbj|BAK21129.1| DNA ligase [Melissococcus plutonius ATCC 35311]
Length = 678
Score = 90.3 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 30/65 (46%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
L+ EA + L + + YY D P D +YDR+ + L ++ +P+L D P
Sbjct: 7 LTLTEATDRADELKEQLNQYSYEYYVQDKPSVEDYVYDRLYKELSEIETAYPDLITSDSP 66
Query: 114 WNTVG 118
VG
Sbjct: 67 TQRVG 71
>gi|213027451|ref|ZP_03341898.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Typhi str. 404ty]
Length = 79
Score = 90.3 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 27/60 (45%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L HH+ Y+ +D P D YDR+ L L+ Q P+L D P VG
Sbjct: 4 IEQQLTELRTTLRHHEYLYHVMDAPEILDAEYDRLMRELRELEAQRPDLITPDSPTQRVG 63
>gi|305682056|ref|ZP_07404860.1| DNA ligase (NAD+) [Corynebacterium matruchotii ATCC 14266]
gi|305658529|gb|EFM48032.1| DNA ligase (NAD+) [Corynebacterium matruchotii ATCC 14266]
Length = 715
Score = 90.3 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Query: 49 KKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF 108
+ E E + L H++ YY P TD +D + ++L+AL+ PEL
Sbjct: 11 TPAETTDTQEIHQEWQRLASEVTRHRELYYNQ-TPEITDAEFDALFKKLEALEADHPELA 69
Query: 109 DEDHPWNTVG 118
D P VG
Sbjct: 70 TPDSPTQQVG 79
>gi|327402054|ref|YP_004342892.1| DNA ligase [Fluviicola taffensis DSM 16823]
gi|327317562|gb|AEA42054.1| DNA ligase [Fluviicola taffensis DSM 16823]
Length = 670
Score = 90.3 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 33/65 (50%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ EA +++E L K H YY NP +D +D + + L L+ QFPEL + P
Sbjct: 1 MNLSEAQLKIEQLTKELTLHNHNYYVESNPTISDYEFDVLLKELQDLETQFPELASDLSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TKRVG 65
>gi|291542878|emb|CBL15988.1| DNA ligase, NAD-dependent [Ruminococcus bromii L2-63]
Length = 661
Score = 90.3 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 29/65 (44%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ A + L K +H YY D P +D YD + L+ ++++FP L P
Sbjct: 1 MDFITAQNRAQELTKQLEYHNNLYYNQDEPEISDYDYDMLMRELENIEKEFPSLKSPMSP 60
Query: 114 WNTVG 118
N VG
Sbjct: 61 TNRVG 65
>gi|317485271|ref|ZP_07944151.1| DNA ligase [Bilophila wadsworthia 3_1_6]
gi|316923397|gb|EFV44603.1| DNA ligase [Bilophila wadsworthia 3_1_6]
Length = 698
Score = 89.9 bits (222), Expect = 9e-17, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 30/65 (46%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
L + +E L ++H Y+ LD P TD Y+ + L L+E+ PE D P
Sbjct: 10 LVEDADKKRLEELRAFVIYHNHRYHTLDAPEITDDEYNAAFQELLRLEERHPEWRSPDSP 69
Query: 114 WNTVG 118
N +G
Sbjct: 70 TNRIG 74
>gi|295394422|ref|ZP_06804646.1| NAD-dependent DNA ligase LigA [Brevibacterium mcbrellneri ATCC
49030]
gi|294972774|gb|EFG48625.1| NAD-dependent DNA ligase LigA [Brevibacterium mcbrellneri ATCC
49030]
Length = 740
Score = 89.9 bits (222), Expect = 9e-17, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 29/71 (40%)
Query: 48 AKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
+ L E L H++ YY D P +D +D + L+ L+ +PEL
Sbjct: 11 SADPAELEPAERQKLAAELAAQIEEHREAYYVHDAPKISDKEFDELVHALEDLESAYPEL 70
Query: 108 FDEDHPWNTVG 118
+D P VG
Sbjct: 71 ARDDSPTQKVG 81
>gi|114776845|ref|ZP_01451888.1| DNA ligase, NAD-dependent [Mariprofundus ferrooxydans PV-1]
gi|114552931|gb|EAU55362.1| DNA ligase, NAD-dependent [Mariprofundus ferrooxydans PV-1]
Length = 670
Score = 89.9 bits (222), Expect = 9e-17, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 30/63 (47%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
K +E+L H YY LD P+ +D YDR+ L++L+ + E D P
Sbjct: 4 KATLTARIEHLRSQLREHNYRYYILDAPVISDAEYDRLLRELESLEAELGEPVPADSPTR 63
Query: 116 TVG 118
TVG
Sbjct: 64 TVG 66
>gi|153003607|ref|YP_001377932.1| DNA ligase, NAD-dependent [Anaeromyxobacter sp. Fw109-5]
gi|166215389|sp|A7H8A2|DNLJ_ANADF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|152027180|gb|ABS24948.1| DNA ligase, NAD-dependent [Anaeromyxobacter sp. Fw109-5]
Length = 699
Score = 89.9 bits (222), Expect = 9e-17, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 24/66 (36%)
Query: 52 TSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
+ A L L YY LD P+ D YDR+ L ++ PEL D
Sbjct: 3 ADADRDSAETRAAELRARILDADHAYYVLDRPVLADAEYDRLVRELAEIEAAHPELATSD 62
Query: 112 HPWNTV 117
P V
Sbjct: 63 SPTQRV 68
>gi|77463176|ref|YP_352680.1| DNA ligase [Rhodobacter sphaeroides 2.4.1]
gi|123730578|sp|Q3J355|DNLJ_RHOS4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|77387594|gb|ABA78779.1| DNA ligase [Rhodobacter sphaeroides 2.4.1]
Length = 704
Score = 89.9 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 36/74 (48%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
+ + V L++ EA E+ L + Y+ D P +D YD + R A++EQF
Sbjct: 1 MQDERPVDQLTEAEAAAELARLAEAIEAANTAYHTHDAPQISDADYDALKVRNRAIEEQF 60
Query: 105 PELFDEDHPWNTVG 118
PEL D P + VG
Sbjct: 61 PELRRSDSPSDRVG 74
>gi|282896837|ref|ZP_06304843.1| NAD-dependent DNA ligase [Raphidiopsis brookii D9]
gi|281198246|gb|EFA73136.1| NAD-dependent DNA ligase [Raphidiopsis brookii D9]
Length = 692
Score = 89.9 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 30/57 (52%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
VE L K+ YY LD+P+ D +YDR+ L L++++P L D P VG
Sbjct: 13 RVEELRKLLQQAGYAYYVLDSPIMEDTIYDRLYRELQELEKKYPNLVTSDSPTQRVG 69
>gi|1770452|emb|CAA66920.1| ligase-like protein [Homo sapiens]
Length = 454
Score = 89.9 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 33/74 (44%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
L + + LS A EV L + YY D PL D +YD + RL AL+ F
Sbjct: 2 LPEFTPIEQLSTSAAQQEVAQLQADLTEYGVAYYEQDAPLVEDHVYDALYARLVALESAF 61
Query: 105 PELFDEDHPWNTVG 118
P+ +D P VG
Sbjct: 62 PQFVTQDSPTQNVG 75
>gi|315083671|gb|EFT55647.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL027PA2]
Length = 740
Score = 89.9 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 26/62 (41%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
A L + L Q YY D P +D YDR+ L +++ PEL D P
Sbjct: 18 AAARHHWTELAQRILDAQDAYYARDAPTISDAEYDRLMVELKKVEDDHPELRTPDSPTQR 77
Query: 117 VG 118
VG
Sbjct: 78 VG 79
>gi|293376177|ref|ZP_06622422.1| DNA ligase (NAD(+)) [Turicibacter sanguinis PC909]
gi|292645164|gb|EFF63229.1| DNA ligase (NAD(+)) [Turicibacter sanguinis PC909]
Length = 669
Score = 89.9 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 30/59 (50%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ +E L K+ + YY LD P +D YDR+ + L L+E+ PEL P VG
Sbjct: 10 KLRIEELTKLLTQYNHEYYVLDKPSVSDREYDRLMQELMELEEKHPELKSNTSPTVRVG 68
>gi|228919228|ref|ZP_04082598.1| DNA ligase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
gi|228840335|gb|EEM85606.1| DNA ligase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
Length = 669
Score = 89.9 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK A +E L + Y+ LDNP +D YDR + L L+ + PE ED P
Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SVRVG 65
>gi|289679597|ref|ZP_06500487.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. syringae
FF5]
Length = 102
Score = 89.9 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 24/60 (40%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L H Y+ LD P D YDR+ L AL+ + P L D P VG
Sbjct: 4 VETRILELRAELDQHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLVTPDSPTQRVG 63
>gi|320450863|ref|YP_004202959.1| DNA ligase, NAD-dependent [Thermus scotoductus SA-01]
gi|320151032|gb|ADW22410.1| DNA ligase, NAD-dependent [Thermus scotoductus SA-01]
Length = 674
Score = 89.9 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 33/65 (50%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ EA + L + +H YY LD P +D YDR+ L L+E+FPEL D P
Sbjct: 1 MTLEEARKRINELRDLIRYHNYRYYVLDAPEISDAEYDRLLRELKELEERFPELKSPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TEQVG 65
>gi|229101110|ref|ZP_04231876.1| DNA ligase [Bacillus cereus Rock3-28]
gi|228682238|gb|EEL36349.1| DNA ligase [Bacillus cereus Rock3-28]
Length = 669
Score = 89.9 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK A +E L + Y+ LDNP +D YDR + L L+ + PE ED P
Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SVRVG 65
>gi|229107967|ref|ZP_04237594.1| DNA ligase [Bacillus cereus Rock1-15]
gi|228675470|gb|EEL30687.1| DNA ligase [Bacillus cereus Rock1-15]
Length = 669
Score = 89.9 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK A +E L + Y+ LDNP +D YDR + L L+ + PE ED P
Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SVRVG 65
>gi|229095009|ref|ZP_04226005.1| DNA ligase [Bacillus cereus Rock3-29]
gi|229113962|ref|ZP_04243388.1| DNA ligase [Bacillus cereus Rock1-3]
gi|228669421|gb|EEL24837.1| DNA ligase [Bacillus cereus Rock1-3]
gi|228688339|gb|EEL42221.1| DNA ligase [Bacillus cereus Rock3-29]
Length = 669
Score = 89.9 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK A +E L + Y+ LDNP +D YDR + L L+ + PE ED P
Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SVRVG 65
>gi|30018549|ref|NP_830180.1| NAD-dependent DNA ligase LigA [Bacillus cereus ATCC 14579]
gi|229125792|ref|ZP_04254818.1| DNA ligase [Bacillus cereus BDRD-Cer4]
gi|81436035|sp|Q81IP2|DNLJ_BACCR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|29894090|gb|AAP07381.1| NAD-dependent DNA ligase [Bacillus cereus ATCC 14579]
gi|228657649|gb|EEL13461.1| DNA ligase [Bacillus cereus BDRD-Cer4]
Length = 669
Score = 89.9 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK A +E L + Y+ LDNP +D YDR + L L+ + PE ED P
Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SVRVG 65
>gi|229148695|ref|ZP_04276945.1| DNA ligase [Bacillus cereus m1550]
gi|228634703|gb|EEK91282.1| DNA ligase [Bacillus cereus m1550]
Length = 669
Score = 89.9 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK A +E L + Y+ LDNP +D YDR + L L+ + PE ED P
Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SVRVG 65
>gi|42779416|ref|NP_976663.1| NAD-dependent DNA ligase LigA [Bacillus cereus ATCC 10987]
gi|81411242|sp|Q73EM3|DNLJ_BACC1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|42735332|gb|AAS39271.1| DNA ligase, NAD-dependent [Bacillus cereus ATCC 10987]
Length = 669
Score = 89.9 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK A +E L + Y+ LDNP +D YDR + L L+ + PE ED P
Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SVRVG 65
>gi|218230787|ref|YP_002365135.1| NAD-dependent DNA ligase LigA [Bacillus cereus B4264]
gi|254781552|sp|B7H4U8|DNLJ_BACC4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|218158744|gb|ACK58736.1| DNA ligase (NAD(+)) [Bacillus cereus B4264]
Length = 669
Score = 89.9 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK A +E L + Y+ LDNP +D YDR + L L+ + PE ED P
Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SVRVG 65
>gi|170079241|ref|YP_001735879.1| DNA ligase, NAD-dependent [Synechococcus sp. PCC 7002]
gi|254781436|sp|B1XLV0|DNLJ_SYNP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|169886910|gb|ACB00624.1| DNA ligase, NAD-dependent [Synechococcus sp. PCC 7002]
Length = 678
Score = 89.9 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 24/57 (42%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L YY LD P D +YD++ L AL+ P+L D P +G
Sbjct: 8 RLAQLRSQLQKAAYAYYVLDAPFMEDAVYDQLYRELVALETAHPQLITPDSPTQRIG 64
>gi|148272584|ref|YP_001222145.1| NAD-dependent DNA ligase LigA [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|166215575|sp|A5CQU5|DNLJ_CLAM3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|147830514|emb|CAN01449.1| NAD-dependant DNA ligase [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
Length = 853
Score = 89.9 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 46 DKAKKVTSLSKGEAM-IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
D A T+ + EA V+ L H+ YY D +D YD + L+AL+E
Sbjct: 12 DDAVPATTPADLEAASARVDALRTEIERHRDEYYGADASTLSDAEYDALVHELEALEEAH 71
Query: 105 PELFDEDHPWNTVG 118
P L +D P TVG
Sbjct: 72 PTLRSQDSPTQTVG 85
>gi|312144161|ref|YP_003995607.1| DNA ligase, NAD-dependent [Halanaerobium sp. 'sapolanicus']
gi|311904812|gb|ADQ15253.1| DNA ligase, NAD-dependent [Halanaerobium sp. 'sapolanicus']
Length = 670
Score = 89.9 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 38/68 (55%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
+ +L+K +A +++ L + + Y+ LD+P +D +D++ + L L+ QFPEL
Sbjct: 1 MNNLNKEKAKKKIKALREKIRKAEYRYFVLDDPQISDAEFDKLMQDLLKLESQFPELVTA 60
Query: 111 DHPWNTVG 118
D P VG
Sbjct: 61 DSPTQRVG 68
>gi|301052018|ref|YP_003790229.1| DNA ligase [Bacillus anthracis CI]
gi|300374187|gb|ADK03091.1| DNA ligase [Bacillus cereus biovar anthracis str. CI]
Length = 669
Score = 89.9 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK A +E L + Y+ LDNP +D YDR + L L+ + PE ED P
Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SVRVG 65
>gi|282899989|ref|ZP_06307949.1| NAD-dependent DNA ligase [Cylindrospermopsis raciborskii CS-505]
gi|281195087|gb|EFA70024.1| NAD-dependent DNA ligase [Cylindrospermopsis raciborskii CS-505]
Length = 690
Score = 89.9 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 30/57 (52%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
VE L K+ YY LD+P+ D +YDR+ L L++++P L D P VG
Sbjct: 13 RVEELRKLLQQASYAYYVLDSPIMEDTIYDRLYRELQELEKKYPNLVTTDSPTQRVG 69
>gi|229042193|ref|ZP_04189947.1| DNA ligase [Bacillus cereus AH676]
gi|228727128|gb|EEL78331.1| DNA ligase [Bacillus cereus AH676]
Length = 669
Score = 89.9 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK A +E L + Y+ LDNP +D YDR + L L+ + PE ED P
Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SVRVG 65
>gi|229194680|ref|ZP_04321473.1| DNA ligase [Bacillus cereus m1293]
gi|228588783|gb|EEK46808.1| DNA ligase [Bacillus cereus m1293]
Length = 669
Score = 89.9 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK A +E L + Y+ LDNP +D YDR + L L+ + PE ED P
Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SVRVG 65
>gi|119503165|ref|ZP_01625249.1| DNA ligase (NAD+) [marine gamma proteobacterium HTCC2080]
gi|119460811|gb|EAW41902.1| DNA ligase (NAD+) [marine gamma proteobacterium HTCC2080]
Length = 673
Score = 89.9 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 30/65 (46%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+S+ + EV L + YYR D P +D YDR L L+++FP L D P
Sbjct: 1 MSEVDPYDEVMRLRDLLRSWGVEYYRNDAPTVSDSEYDRTLLALRELEQKFPHLVSADSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|52144941|ref|YP_081888.1| NAD-dependent DNA ligase LigA [Bacillus cereus E33L]
gi|81689708|sp|Q63GS3|DNLJ_BACCZ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|51978410|gb|AAU19960.1| DNA ligase(NAD+) (NAD-dependent DNA ligase) [Bacillus cereus E33L]
Length = 669
Score = 89.9 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK A +E L + Y+ LDNP +D YDR + L L+ + PE ED P
Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SVRVG 65
>gi|241896133|ref|ZP_04783429.1| NAD-dependent DNA ligase [Weissella paramesenteroides ATCC 33313]
gi|241870647|gb|EER74398.1| NAD-dependent DNA ligase [Weissella paramesenteroides ATCC 33313]
Length = 675
Score = 89.9 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 32/70 (45%)
Query: 49 KKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF 108
+V EA ++E L K YY D+P D YD+V +RL L+ FPEL
Sbjct: 2 TEVALTDPTEAAQQMEKLQLQLQQWAKEYYENDSPTVEDAEYDKVYKRLQELEAAFPELV 61
Query: 109 DEDHPWNTVG 118
+ D VG
Sbjct: 62 NPDSITQQVG 71
>gi|330718928|ref|ZP_08313528.1| DNA ligase, NAD-dependent [Leuconostoc fallax KCTC 3537]
Length = 681
Score = 89.9 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 33/74 (44%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
L + K V+ L+ +A E+ L + YY DNP D +YD RL L+ F
Sbjct: 2 LPEFKAVSELTTAQAQQEIAKLQDDLTRYGVEYYEDDNPSVEDHVYDAFYARLVDLEAAF 61
Query: 105 PELFDEDHPWNTVG 118
P+ + P VG
Sbjct: 62 PQFMTPESPTQRVG 75
>gi|49479078|ref|YP_034626.1| NAD-dependent DNA ligase LigA [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|118476055|ref|YP_893206.1| NAD-dependent DNA ligase LigA [Bacillus thuringiensis str. Al
Hakam]
gi|225862344|ref|YP_002747722.1| DNA ligase, NAD-dependent [Bacillus cereus 03BB102]
gi|229182688|ref|ZP_04309929.1| DNA ligase [Bacillus cereus BGSC 6E1]
gi|81397398|sp|Q6HP94|DNLJ_BACHK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|166215395|sp|A0R906|DNLJ_BACAH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254781551|sp|C1EV74|DNLJ_BACC3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|49330634|gb|AAT61280.1| DNA ligase(NAD+) (NAD-dependent DNA ligase) [Bacillus thuringiensis
serovar konkukian str. 97-27]
gi|118415280|gb|ABK83699.1| NAD-dependent DNA ligase [Bacillus thuringiensis str. Al Hakam]
gi|225789655|gb|ACO29872.1| DNA ligase (NAD(+)) [Bacillus cereus 03BB102]
gi|228600773|gb|EEK58352.1| DNA ligase [Bacillus cereus BGSC 6E1]
Length = 669
Score = 89.9 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK A +E L + Y+ LDNP +D YDR + L L+ + PE ED P
Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SVRVG 65
>gi|228956728|ref|ZP_04118514.1| DNA ligase [Bacillus thuringiensis serovar pakistani str. T13001]
gi|229143090|ref|ZP_04271523.1| DNA ligase [Bacillus cereus BDRD-ST24]
gi|296501121|ref|YP_003662821.1| NAD-dependent DNA ligase LigA [Bacillus thuringiensis BMB171]
gi|228640363|gb|EEK96760.1| DNA ligase [Bacillus cereus BDRD-ST24]
gi|228802916|gb|EEM49748.1| DNA ligase [Bacillus thuringiensis serovar pakistani str. T13001]
gi|296322173|gb|ADH05101.1| NAD-dependent DNA ligase LigA [Bacillus thuringiensis BMB171]
Length = 669
Score = 89.5 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK A +E L + Y+ LDNP +D YDR + L L+ + PE ED P
Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SVRVG 65
>gi|83816597|ref|YP_445022.1| DNA ligase, NAD-dependent [Salinibacter ruber DSM 13855]
gi|123739757|sp|Q2S459|DNLJ_SALRD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|83757991|gb|ABC46104.1| DNA ligase, NAD-dependent [Salinibacter ruber DSM 13855]
Length = 690
Score = 89.5 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 70 ALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH YY LD P+ +D YDR+ ++L L+ ++P L D P + VG
Sbjct: 32 LRHHNYRYYVLDAPVVSDAEYDRLFQQLQTLEAEYPVLQTPDSPTHQVG 80
>gi|325838923|ref|ZP_08166729.1| DNA ligase (NAD+) [Turicibacter sp. HGF1]
gi|325490664|gb|EGC92975.1| DNA ligase (NAD+) [Turicibacter sp. HGF1]
Length = 662
Score = 89.5 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 30/59 (50%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ +E L K+ + YY LD P +D YDR+ + L L+E+ PEL P VG
Sbjct: 3 KLRIEELTKLLTQYNHEYYVLDKPSVSDREYDRLMQELMELEEKHPELKSNTSPTVRVG 61
>gi|218895413|ref|YP_002443824.1| DNA ligase, NAD-dependent [Bacillus cereus G9842]
gi|228963387|ref|ZP_04124548.1| DNA ligase [Bacillus thuringiensis serovar sotto str. T04001]
gi|254781550|sp|B7IUW5|DNLJ_BACC2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|218545091|gb|ACK97485.1| DNA ligase, NAD-dependent [Bacillus cereus G9842]
gi|228796281|gb|EEM43728.1| DNA ligase [Bacillus thuringiensis serovar sotto str. T04001]
Length = 669
Score = 89.5 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK A +E L + Y+ LDNP +D YDR + L L+ + PE ED P
Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SVRVG 65
>gi|206974389|ref|ZP_03235306.1| DNA ligase, NAD-dependent [Bacillus cereus H3081.97]
gi|217957864|ref|YP_002336408.1| NAD-dependent DNA ligase LigA [Bacillus cereus AH187]
gi|254781553|sp|B7HSW5|DNLJ_BACC7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254781554|sp|B9J1L6|DNLJ_BACCQ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|206747629|gb|EDZ59019.1| DNA ligase, NAD-dependent [Bacillus cereus H3081.97]
gi|217064176|gb|ACJ78426.1| DNA ligase, NAD-dependent [Bacillus cereus AH187]
Length = 669
Score = 89.5 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK A +E L + Y+ LDNP +D YDR + L L+ + PE ED P
Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SVRVG 65
>gi|122971128|sp|Q14L37|DNLJ_SPICI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|110005471|emb|CAK99793.1| dna ligase protein [Spiroplasma citri]
Length = 667
Score = 89.5 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 29/64 (45%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ +A L + YY DNP +D YDR + L A+++Q+ EL D P
Sbjct: 1 MTFEQAKKRSLVLKEQLEKWNYEYYVNDNPSVSDQEYDRALQELIAIEQQYSELITIDSP 60
Query: 114 WNTV 117
V
Sbjct: 61 TQRV 64
>gi|300118925|ref|ZP_07056636.1| NAD-dependent DNA ligase LigA [Bacillus cereus SJ1]
gi|298723541|gb|EFI64272.1| NAD-dependent DNA ligase LigA [Bacillus cereus SJ1]
Length = 669
Score = 89.5 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK A +E L + Y+ LDNP +D YDR + L L+ + PE ED P
Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SVRVG 65
>gi|228906068|ref|ZP_04069957.1| DNA ligase [Bacillus thuringiensis IBL 200]
gi|228853477|gb|EEM98245.1| DNA ligase [Bacillus thuringiensis IBL 200]
Length = 669
Score = 89.5 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK A +E L + Y+ LDNP +D YDR + L L+ + PE ED P
Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRDMQELIKLEAENPEFMSEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SVRVG 65
>gi|228937587|ref|ZP_04100225.1| DNA ligase [Bacillus thuringiensis serovar berliner ATCC 10792]
gi|228970474|ref|ZP_04131125.1| DNA ligase [Bacillus thuringiensis serovar thuringiensis str.
T01001]
gi|228977043|ref|ZP_04137446.1| DNA ligase [Bacillus thuringiensis Bt407]
gi|228782660|gb|EEM30835.1| DNA ligase [Bacillus thuringiensis Bt407]
gi|228789206|gb|EEM37134.1| DNA ligase [Bacillus thuringiensis serovar thuringiensis str.
T01001]
gi|228822068|gb|EEM68058.1| DNA ligase [Bacillus thuringiensis serovar berliner ATCC 10792]
gi|326938080|gb|AEA13976.1| NAD-dependent DNA ligase LigA [Bacillus thuringiensis serovar
chinensis CT-43]
Length = 669
Score = 89.5 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK A +E L + Y+ LDNP +D YDR + L L+ + PE ED P
Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRDMQELIKLEAENPEFMSEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SVRVG 65
>gi|317507336|ref|ZP_07965075.1| DNA ligase [Segniliparus rugosus ATCC BAA-974]
gi|316254381|gb|EFV13712.1| DNA ligase [Segniliparus rugosus ATCC BAA-974]
Length = 712
Score = 89.5 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 54 LSKGEAM-----IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF 108
+S+G+A L HQ YY LD+P TD +D + L AL+++ PEL
Sbjct: 1 MSEGKAAGTTPQERWLRLADQVKEHQFRYYVLDSPTVTDAEFDALLRELQALEDEHPELA 60
Query: 109 DEDHPWNTVG 118
P VG
Sbjct: 61 SASSPTKLVG 70
>gi|110637718|ref|YP_677925.1| DNA ligase [Cytophaga hutchinsonii ATCC 33406]
gi|123354667|sp|Q11VI1|DNLJ_CYTH3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|110280399|gb|ABG58585.1| DNA ligase [Cytophaga hutchinsonii ATCC 33406]
Length = 670
Score = 89.5 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 33/65 (50%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ +A+ +E L K+ +H YY+ D +D +D + + L L++QFP D P
Sbjct: 1 MNDAQALARIEELNKVLHYHNNLYYQKDTTEISDFEFDTLLQELIELEKQFPLYLKADSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SQRVG 65
>gi|241889713|ref|ZP_04777011.1| DNA ligase, NAD-dependent [Gemella haemolysans ATCC 10379]
gi|241863335|gb|EER67719.1| DNA ligase, NAD-dependent [Gemella haemolysans ATCC 10379]
Length = 663
Score = 89.5 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 34/62 (54%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ E+ LV + + YY DNP TD YD + ++L+ L+E++PEL E+ P
Sbjct: 2 KQIQEEILKLVSLLNKYSYEYYVEDNPQITDTEYDTLYKQLEKLEEKYPELILENSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|157964864|ref|YP_001499688.1| NAD-dependent DNA ligase LigA [Rickettsia massiliae MTU5]
gi|166216234|sp|A8F2K5|DNLJ_RICM5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|157844640|gb|ABV85141.1| DNA ligase, NAD-dependent [Rickettsia massiliae MTU5]
Length = 689
Score = 89.5 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 34/69 (49%)
Query: 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
+ +S+ EA +E L + YY DNPL +D YD++ L+++FP L
Sbjct: 3 NIDLISEKEAQKLLEELADKIAAYNHAYYIEDNPLVSDSEYDQLFNTNLKLEQKFPHLIL 62
Query: 110 EDHPWNTVG 118
E+ P VG
Sbjct: 63 ENSPSKKVG 71
>gi|148240764|ref|YP_001226151.1| NAD-dependent DNA ligase LigA [Synechococcus sp. WH 7803]
gi|166216252|sp|A5GPI9|DNLJ_SYNPW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|147849303|emb|CAK24854.1| NAD-dependent DNA ligase [Synechococcus sp. WH 7803]
Length = 698
Score = 89.5 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 25/59 (42%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L ++ YY LD P D +YDR+ L L+ PEL + D P VG
Sbjct: 8 QERAAELRQLLNRAAHAYYVLDAPDLEDSVYDRLYRELLDLEAAHPELVEADSPTQRVG 66
>gi|149173204|ref|ZP_01851835.1| DNA ligase [Planctomyces maris DSM 8797]
gi|148848010|gb|EDL62342.1| DNA ligase [Planctomyces maris DSM 8797]
Length = 671
Score = 89.5 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 29/60 (48%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E+E L K HH + YY P TD YDR+ +RL+ L+ PE + P VG
Sbjct: 3 VRTEIEELRKQLEHHNRLYYLDAKPEITDREYDRLMKRLEQLETDHPEYDSPESPTKKVG 62
>gi|222055066|ref|YP_002537428.1| DNA ligase, NAD-dependent [Geobacter sp. FRC-32]
gi|254781339|sp|B9M861|DNLJ_GEOSF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|221564355|gb|ACM20327.1| DNA ligase, NAD-dependent [Geobacter sp. FRC-32]
Length = 669
Score = 89.5 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + A + ++ L + H YY D P TD YD + L L+++FP+L D P
Sbjct: 1 MDRTAAQLRIQELHREINRHNYLYYVEDRPEITDAEYDLLLRELQQLEKEFPDLVTADSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|33241290|ref|NP_876232.1| NAD-dependent DNA ligase LigA [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
gi|81663882|sp|Q7V9J2|DNLJ_PROMA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|33238820|gb|AAQ00885.1| NAD-dependent DNA ligase [Prochlorococcus marinus subsp. marinus
str. CCMP1375]
Length = 685
Score = 89.5 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+++ + L + YY LD+PL D ++DR+ L L++Q+P L D P
Sbjct: 1 MAETNHSKRISELRSLLNKANHAYYILDSPLIEDAVFDRLYRELIELEKQYPSLVTPDSP 60
Query: 114 WNTVG 118
+G
Sbjct: 61 SQRLG 65
>gi|315223456|ref|ZP_07865313.1| NAD-dependent DNA ligase LigA [Capnocytophaga ochracea F0287]
gi|314946629|gb|EFS98620.1| NAD-dependent DNA ligase LigA [Capnocytophaga ochracea F0287]
Length = 662
Score = 89.5 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 33/59 (55%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L + H YY LDNP +D +D+ + L AL++ +PE +DE+ P VG
Sbjct: 2 KEKIQQLREELNEHNYNYYVLDNPTISDYEFDQKLKELQALEQAYPEFYDENSPTVRVG 60
>gi|271969279|ref|YP_003343475.1| DNA ligase (NAD(+)) [Streptosporangium roseum DSM 43021]
gi|270512454|gb|ACZ90732.1| DNA ligase (NAD(+)) [Streptosporangium roseum DSM 43021]
Length = 726
Score = 89.5 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 26/60 (43%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
A+ L ++ Y+ LD+P +D YD L ++E+ P L D P VG
Sbjct: 12 ALDRHAELTELVEQANWRYHVLDSPTVSDAQYDTWMRELRGIEEEHPSLRTPDSPTQKVG 71
>gi|256852262|ref|ZP_05557648.1| DNA ligase, NAD-dependent [Lactobacillus jensenii 27-2-CHN]
gi|260661706|ref|ZP_05862617.1| DNA ligase, NAD-dependent [Lactobacillus jensenii 115-3-CHN]
gi|282934844|ref|ZP_06340077.1| DNA ligase (NAD(+)) [Lactobacillus jensenii 208-1]
gi|297205571|ref|ZP_06922967.1| NAD-dependent DNA ligase LigA [Lactobacillus jensenii JV-V16]
gi|256615308|gb|EEU20499.1| DNA ligase, NAD-dependent [Lactobacillus jensenii 27-2-CHN]
gi|260547453|gb|EEX23432.1| DNA ligase, NAD-dependent [Lactobacillus jensenii 115-3-CHN]
gi|281301075|gb|EFA93386.1| DNA ligase (NAD(+)) [Lactobacillus jensenii 208-1]
gi|297150149|gb|EFH30446.1| NAD-dependent DNA ligase LigA [Lactobacillus jensenii JV-V16]
Length = 669
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 34/68 (50%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
+ L+K A E+E L K + YY D P D +YD+ ++L L++QFPEL
Sbjct: 1 MAKLNKKNAQEEIETLRKKLNTWAEQYYAQDAPSVEDAVYDQNYQKLVELEKQFPELVTP 60
Query: 111 DHPWNTVG 118
D VG
Sbjct: 61 DSITQRVG 68
>gi|196040110|ref|ZP_03107412.1| DNA ligase (NAD(+)) [Bacillus cereus NVH0597-99]
gi|196028965|gb|EDX67570.1| DNA ligase (NAD(+)) [Bacillus cereus NVH0597-99]
Length = 669
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK A +E L + Y+ LDNP +D YDR + L L+ + PE ED P
Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SIRVG 65
>gi|296110658|ref|YP_003621039.1| NAD-dependent DNA ligase [Leuconostoc kimchii IMSNU 11154]
gi|295832189|gb|ADG40070.1| NAD-dependent DNA ligase [Leuconostoc kimchii IMSNU 11154]
Length = 681
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 33/74 (44%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
L + + L+ A E+ + L + YY D PL D +YD + RL L+ F
Sbjct: 2 LPEFTPIEQLTTPMAQQEIANHQETLLQYGVAYYEQDAPLVEDYVYDALYARLVELEAAF 61
Query: 105 PELFDEDHPWNTVG 118
P+ + D P VG
Sbjct: 62 PQFINPDSPTQKVG 75
>gi|256820386|ref|YP_003141665.1| DNA ligase, NAD-dependent [Capnocytophaga ochracea DSM 7271]
gi|256581969|gb|ACU93104.1| DNA ligase, NAD-dependent [Capnocytophaga ochracea DSM 7271]
Length = 662
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 33/59 (55%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L + H YY LDNP +D +D+ + L AL++ +PE +DE+ P VG
Sbjct: 2 KEKIQQLREELNEHNYNYYVLDNPTISDYEFDQKLKELQALEQAYPEFYDENSPTVRVG 60
>gi|170746461|ref|YP_001752721.1| DNA ligase, NAD-dependent [Methylobacterium radiotolerans JCM 2831]
gi|254781368|sp|B1M575|DNLJ_METRJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|170652983|gb|ACB22038.1| DNA ligase, NAD-dependent [Methylobacterium radiotolerans JCM 2831]
Length = 810
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 47 KAKKVT-SLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFP 105
K++ + L+ EA E L L + YY+ D P +D YDR+ RL+ ++ +FP
Sbjct: 5 KSEPLDLDLTAEEARAEYARLSDAILEADRLYYQEDAPEISDAEYDRLRRRLEDIEARFP 64
Query: 106 ELFDEDHPWNTVG 118
+L +VG
Sbjct: 65 DLAGTGAASTSVG 77
>gi|218901495|ref|YP_002449329.1| DNA ligase, NAD-dependent [Bacillus cereus AH820]
gi|254781549|sp|B7JM96|DNLJ_BACC0 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|218535434|gb|ACK87832.1| DNA ligase, NAD-dependent [Bacillus cereus AH820]
Length = 669
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK A +E L + Y+ LDNP +D YDR + L L+ + PE ED P
Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SIRVG 65
>gi|30260478|ref|NP_842855.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. Ames]
gi|49183320|ref|YP_026572.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. Sterne]
gi|50196911|ref|YP_052606.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. 'Ames
Ancestor']
gi|65317730|ref|ZP_00390689.1| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II)
[Bacillus anthracis str. A2012]
gi|165871348|ref|ZP_02215996.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0488]
gi|167634237|ref|ZP_02392559.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0442]
gi|167640082|ref|ZP_02398349.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0193]
gi|170688355|ref|ZP_02879564.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0465]
gi|170708762|ref|ZP_02899199.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0389]
gi|177653653|ref|ZP_02935792.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0174]
gi|190567340|ref|ZP_03020254.1| DNA ligase, NAD-dependent [Bacillus anthracis Tsiankovskii-I]
gi|190567489|ref|ZP_03020402.1| DNA ligase, NAD-dependent [Bacillus anthracis Tsiankovskii-I]
gi|196034623|ref|ZP_03102031.1| DNA ligase, NAD-dependent [Bacillus cereus W]
gi|227812970|ref|YP_002812979.1| DNA ligase, NAD-dependent [Bacillus anthracis str. CDC 684]
gi|228913034|ref|ZP_04076673.1| DNA ligase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
gi|228925550|ref|ZP_04088639.1| DNA ligase [Bacillus thuringiensis serovar pondicheriensis BGSC
4BA1]
gi|228944102|ref|ZP_04106481.1| DNA ligase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
gi|229119952|ref|ZP_04249207.1| DNA ligase [Bacillus cereus 95/8201]
gi|229604913|ref|YP_002864923.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0248]
gi|254686689|ref|ZP_05150547.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. CNEVA-9066]
gi|254739086|ref|ZP_05196788.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. Western
North America USA6153]
gi|254742292|ref|ZP_05199978.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. Kruger B]
gi|254756068|ref|ZP_05208097.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. Vollum]
gi|254761885|ref|ZP_05213734.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. Australia
94]
gi|81584374|sp|Q81ZG1|DNLJ_BACAN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254781547|sp|C3PBP1|DNLJ_BACAA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254781548|sp|C3L543|DNLJ_BACAC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|30253846|gb|AAP24341.1| DNA ligase (NAD(+)) [Bacillus anthracis str. Ames]
gi|49177247|gb|AAT52623.1| DNA ligase, NAD-dependent [Bacillus anthracis str. Sterne]
gi|50082973|gb|AAT70114.1| DNA ligase, NAD-dependent [Bacillus anthracis str. 'Ames Ancestor']
gi|164712832|gb|EDR18361.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0488]
gi|167511893|gb|EDR87272.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0193]
gi|167530551|gb|EDR93266.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0442]
gi|170126341|gb|EDS95231.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0389]
gi|170667687|gb|EDT18441.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0465]
gi|172081233|gb|EDT66308.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0174]
gi|190561276|gb|EDV15248.1| DNA ligase, NAD-dependent [Bacillus anthracis Tsiankovskii-I]
gi|190561467|gb|EDV15438.1| DNA ligase, NAD-dependent [Bacillus anthracis Tsiankovskii-I]
gi|195992666|gb|EDX56626.1| DNA ligase, NAD-dependent [Bacillus cereus W]
gi|227002604|gb|ACP12347.1| DNA ligase (NAD(+)) [Bacillus anthracis str. CDC 684]
gi|228663418|gb|EEL19003.1| DNA ligase [Bacillus cereus 95/8201]
gi|228815491|gb|EEM61733.1| DNA ligase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
gi|228834028|gb|EEM79576.1| DNA ligase [Bacillus thuringiensis serovar pondicheriensis BGSC
4BA1]
gi|228846439|gb|EEM91452.1| DNA ligase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
gi|229269321|gb|ACQ50958.1| DNA ligase, NAD-dependent [Bacillus anthracis str. A0248]
Length = 669
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK A +E L + Y+ LDNP +D YDR + L L+ + PE ED P
Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SIRVG 65
>gi|258544861|ref|ZP_05705095.1| DNA ligase, NAD-dependent [Cardiobacterium hominis ATCC 15826]
gi|258519884|gb|EEV88743.1| DNA ligase, NAD-dependent [Cardiobacterium hominis ATCC 15826]
Length = 668
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 24/57 (42%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L + H YY LDNPL D YD + L AL+ E D P VG
Sbjct: 6 RLAALREEIRAHDHAYYVLDNPLIADAEYDALLRELRALEAASGEPVPADSPSQRVG 62
>gi|229159446|ref|ZP_04287464.1| DNA ligase [Bacillus cereus R309803]
gi|228624017|gb|EEK80825.1| DNA ligase [Bacillus cereus R309803]
Length = 669
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK A +E L + Y+ LDNP +D YDR + L L+ + PE ED P
Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SIRVG 65
>gi|148927169|ref|ZP_01810794.1| DNA ligase, NAD-dependent [candidate division TM7 genomosp. GTL1]
gi|147887384|gb|EDK72833.1| DNA ligase, NAD-dependent [candidate division TM7 genomosp. GTL1]
Length = 675
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 28/65 (43%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++K L ++ + YY LD P D +YD + L L+ + PEL D P
Sbjct: 1 MTKPHLRERAIKLRELLSQYSYEYYVLDRPSVADAIYDSLFGELKKLEAEHPELITADSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|254422498|ref|ZP_05036216.1| DNA ligase, NAD-dependent [Synechococcus sp. PCC 7335]
gi|196189987|gb|EDX84951.1| DNA ligase, NAD-dependent [Synechococcus sp. PCC 7335]
Length = 694
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 25/61 (40%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E L YY LD P D +YDR+ L L++Q+P L D P V
Sbjct: 21 EIETRAAELRSQLQKASYAYYVLDAPELPDSVYDRLYRELQTLEDQYPGLQTSDSPTQRV 80
Query: 118 G 118
G
Sbjct: 81 G 81
>gi|307244055|ref|ZP_07526174.1| DNA ligase (NAD+) [Peptostreptococcus stomatis DSM 17678]
gi|306492579|gb|EFM64613.1| DNA ligase (NAD+) [Peptostreptococcus stomatis DSM 17678]
Length = 702
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK EA + V L++I +H YY D+P +D YDR+ + L L+E FPE +D P
Sbjct: 22 ISKKEAGLMVGDLIEILNYHSDRYYNSDSPEISDMDYDRLMKSLILLEEAFPEYKKKDSP 81
Query: 114 WNTVG 118
VG
Sbjct: 82 TVRVG 86
>gi|88809499|ref|ZP_01125007.1| DNA ligase [Synechococcus sp. WH 7805]
gi|88786718|gb|EAR17877.1| DNA ligase [Synechococcus sp. WH 7805]
Length = 692
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 25/59 (42%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L ++ YY LD P D +YDR+ L L+ PEL + D P VG
Sbjct: 2 QERAAELRQLLNRAAHAYYVLDAPDLEDAVYDRLYRELLDLESAHPELVEADSPTQRVG 60
>gi|15613212|ref|NP_241515.1| NAD-dependent DNA ligase LigA [Bacillus halodurans C-125]
gi|15213980|sp|Q9KF37|DNLJ_BACHD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|10173263|dbj|BAB04368.1| DNA ligase (polydeoxyribonucleotide synthase (NAD+)) [Bacillus
halodurans C-125]
Length = 669
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 32/65 (49%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + +A ++E L + YY LD PL +D YD + L L+E FPEL + P
Sbjct: 1 MERNDAERKIEKLRNQLEEYGYHYYVLDKPLVSDAEYDGLMNELIELEEAFPELKSDTSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SVRVG 65
>gi|238020272|ref|ZP_04600698.1| hypothetical protein GCWU000324_00147 [Kingella oralis ATCC 51147]
gi|237868666|gb|EEP69670.1| hypothetical protein GCWU000324_00147 [Kingella oralis ATCC 51147]
Length = 797
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 31/63 (49%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
+A +++ L + YY LD P D YDR+ L+AL+ ++P+ + P N
Sbjct: 20 PQQAQQKIQTLTAQLNQYAHEYYTLDAPTVPDSEYDRLYRELEALETEYPQFRLPESPTN 79
Query: 116 TVG 118
VG
Sbjct: 80 RVG 82
>gi|229089420|ref|ZP_04220691.1| DNA ligase [Bacillus cereus Rock3-42]
gi|228693897|gb|EEL47589.1| DNA ligase [Bacillus cereus Rock3-42]
Length = 669
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK A +E L + Y+ LDNP +D YDR + L L+ + PE ED P
Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SIRVG 65
>gi|229154059|ref|ZP_04282184.1| DNA ligase [Bacillus cereus ATCC 4342]
gi|228629339|gb|EEK86041.1| DNA ligase [Bacillus cereus ATCC 4342]
Length = 669
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK A +E L + Y+ LDNP +D YDR + L L+ + PE ED P
Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SIRVG 65
>gi|269957188|ref|YP_003326977.1| DNA ligase, NAD-dependent [Xylanimonas cellulosilytica DSM 15894]
gi|269305869|gb|ACZ31419.1| DNA ligase, NAD-dependent [Xylanimonas cellulosilytica DSM 15894]
Length = 830
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 27/67 (40%)
Query: 52 TSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
L + A L + Q+ YY D+PL +D YD L AL+ P L +
Sbjct: 9 AELDEQAAQRRWAELRDLVEADQRAYYEHDSPLVSDAEYDARLHELAALEAAHPALATPE 68
Query: 112 HPWNTVG 118
P VG
Sbjct: 69 SPTQRVG 75
>gi|319779225|ref|YP_004130138.1| DNA ligase [Taylorella equigenitalis MCE9]
gi|317109249|gb|ADU91995.1| DNA ligase [Taylorella equigenitalis MCE9]
Length = 681
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 25/55 (45%)
Query: 64 EYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E L + H K YY DNP +D YD + +L ++ PE D P VG
Sbjct: 10 EALKSLISVHDKAYYIDDNPQISDEEYDGLMRKLLDYEQAHPEWVTSDSPSQRVG 64
>gi|229171138|ref|ZP_04298732.1| DNA ligase [Bacillus cereus MM3]
gi|228612316|gb|EEK69544.1| DNA ligase [Bacillus cereus MM3]
Length = 669
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK A +E L + Y+ LDNP +D YDR + L L+ + PE ED P
Sbjct: 1 MSKEIAKQRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SIRVG 65
>gi|254724765|ref|ZP_05186548.1| NAD-dependent DNA ligase LigA [Bacillus anthracis str. A1055]
Length = 669
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK A +E L + Y+ LDNP +D YDR + L L+ + PE ED P
Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SIRVG 65
>gi|228931797|ref|ZP_04094693.1| DNA ligase [Bacillus thuringiensis serovar andalousiensis BGSC
4AW1]
gi|228827777|gb|EEM73515.1| DNA ligase [Bacillus thuringiensis serovar andalousiensis BGSC
4AW1]
Length = 669
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK A +E L + Y+ LDNP +D YDR + L L+ + PE ED P
Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SIRVG 65
>gi|7674018|sp|Q9ZFY8|DNLJ_THESK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|4235370|gb|AAD13188.1| NAD-dependent DNA ligase [Thermus sp. AK16D]
Length = 674
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 33/65 (50%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ EA V L + +H YY LD P +D YDR+ L L+E+FPEL D P
Sbjct: 1 MTLEEARRRVNELRDLIRYHNYLYYVLDAPEISDAEYDRLLRELKELEERFPELKSPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TEQVG 65
>gi|315498681|ref|YP_004087485.1| DNA ligase, nad-dependent [Asticcacaulis excentricus CB 48]
gi|315416693|gb|ADU13334.1| DNA ligase, NAD-dependent [Asticcacaulis excentricus CB 48]
Length = 697
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 28/60 (46%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
A L HH+ YY + P TD YD + + L AL+ Q+P+L D P VG
Sbjct: 9 AQTRHAQLSTEIKHHRDLYYNQEAPELTDAEYDALEQELRALEAQYPDLHTVDSPTEQVG 68
>gi|238917130|ref|YP_002930647.1| DNA ligase (NAD+) [Eubacterium eligens ATCC 27750]
gi|238872490|gb|ACR72200.1| DNA ligase (NAD+) [Eubacterium eligens ATCC 27750]
Length = 669
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 27/57 (47%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E L K +H YY D P +D YD++ RL ++++ PE D P +G
Sbjct: 6 EYSELKKTIDYHMDRYYNQDEPEISDYEYDKLMIRLKEIEKEHPEWVTSDSPSQKIG 62
>gi|218961271|ref|YP_001741046.1| DNA ligase, NAD-dependent [Candidatus Cloacamonas acidaminovorans]
gi|167729928|emb|CAO80840.1| DNA ligase, NAD-dependent [Candidatus Cloacamonas acidaminovorans]
Length = 667
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++K E ++ L HH + YY L P +D YD + + L L+ Q+ E E+ P
Sbjct: 1 MNKNELKARIDRLRAEIEHHNRLYYTLAKPEISDYEYDMLVKELQELEAQYAEGAVEESP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQKVG 65
>gi|228983547|ref|ZP_04143752.1| DNA ligase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
gi|228776143|gb|EEM24504.1| DNA ligase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
Length = 669
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK A +E L + Y+ LDNP +D YDR + L L+ + PE ED P
Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SIRVG 65
>gi|118587526|ref|ZP_01544950.1| DNA ligase, NAD-dependent [Oenococcus oeni ATCC BAA-1163]
gi|118431977|gb|EAV38719.1| DNA ligase, NAD-dependent [Oenococcus oeni ATCC BAA-1163]
Length = 684
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 31/72 (43%)
Query: 46 DKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFP 105
D+ + L+ +A E+ L + YY DNP D +YD RL AL+ +P
Sbjct: 5 DQFTPIEDLTFTQAQAEIRDLSDELTKWGREYYEEDNPSVEDYVYDAHYARLVALERAYP 64
Query: 106 ELFDEDHPWNTV 117
L D P V
Sbjct: 65 SLAMPDSPTQHV 76
>gi|290889907|ref|ZP_06552994.1| hypothetical protein AWRIB429_0384 [Oenococcus oeni AWRIB429]
gi|290480517|gb|EFD89154.1| hypothetical protein AWRIB429_0384 [Oenococcus oeni AWRIB429]
Length = 684
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 32/72 (44%)
Query: 46 DKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFP 105
D+ + L+ +A E+ L + YY DNP D +YD RL AL++ +P
Sbjct: 5 DQFTPIEDLTFTQAQAEIRDLSDELTKWGREYYEEDNPSVEDYVYDAHYARLVALEKAYP 64
Query: 106 ELFDEDHPWNTV 117
L D P V
Sbjct: 65 SLAMPDSPTQHV 76
>gi|116490507|ref|YP_810051.1| NAD-dependent DNA ligase [Oenococcus oeni PSU-1]
gi|122277306|sp|Q04GN6|DNLJ_OENOB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|116091232|gb|ABJ56386.1| NAD-dependent DNA ligase [Oenococcus oeni PSU-1]
Length = 684
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 32/72 (44%)
Query: 46 DKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFP 105
D+ + L+ +A E+ L + YY DNP D +YD RL AL++ +P
Sbjct: 5 DQFTPIEDLTFTQAQAEIRDLSDELTKWGREYYEEDNPSVEDYVYDAHYARLVALEKAYP 64
Query: 106 ELFDEDHPWNTV 117
L D P V
Sbjct: 65 SLAMPDSPTQHV 76
>gi|282856148|ref|ZP_06265431.1| DNA ligase (NAD(+)) [Pyramidobacter piscolens W5455]
gi|282585907|gb|EFB91192.1| DNA ligase (NAD(+)) [Pyramidobacter piscolens W5455]
Length = 681
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 28/63 (44%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
+ E + +LV H + YY LD P D YD + + + + P+L +D P
Sbjct: 5 EREKLDRYYWLVDELNRHGRLYYVLDAPEIEDDEYDALMREMLQFEREHPDLIRDDSPSK 64
Query: 116 TVG 118
VG
Sbjct: 65 RVG 67
>gi|229028145|ref|ZP_04184287.1| DNA ligase [Bacillus cereus AH1271]
gi|228733163|gb|EEL84003.1| DNA ligase [Bacillus cereus AH1271]
Length = 669
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK A +E L + Y+ LDNP +D YDR + L L+ + PE ED P
Sbjct: 1 MSKEIAKQRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SIRVG 65
>gi|226226196|ref|YP_002760302.1| NAD(+)-dependent DNA ligase [Gemmatimonas aurantiaca T-27]
gi|254781336|sp|C1A6H2|DNLJ_GEMAT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|226089387|dbj|BAH37832.1| NAD(+)-dependent DNA ligase [Gemmatimonas aurantiaca T-27]
Length = 689
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 28/61 (45%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+ + L + Q YY LD P +D YDR+ L ++ ++P L ED P V
Sbjct: 11 QTVERARELREQLGTAQHEYYVLDRPTLSDQEYDRLFRELQGIEAEYPTLCTEDSPTRRV 70
Query: 118 G 118
G
Sbjct: 71 G 71
>gi|253565642|ref|ZP_04843097.1| DNA ligase [Bacteroides sp. 3_2_5]
gi|251945921|gb|EES86328.1| DNA ligase [Bacteroides sp. 3_2_5]
Length = 665
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++E L H YY L+ P +D +D + L L+++ PE DE+ P VG
Sbjct: 3 VKEKIEQLRLQLHQHNYNYYVLNAPEISDKEFDDLMRELQDLEQEHPEYKDENSPTMRVG 62
>gi|42561289|ref|NP_975740.1| DNA ligase [Mycoplasma mycoides subsp. mycoides SC str. PG1]
gi|81400468|sp|Q6MSK8|DNLJ_MYCMS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|42492787|emb|CAE77382.1| DNA ligase [Mycoplasma mycoides subsp. mycoides SC str. PG1]
gi|301320499|gb|ADK69142.1| DNA ligase (NAD(+)) [Mycoplasma mycoides subsp. mycoides SC str.
Gladysdale]
Length = 668
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 32/65 (49%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK +A++ + L + K YY DNP D YD + L +L+ +PEL D P
Sbjct: 1 MSKDKALLRINQLKEQLNLWSKQYYVDDNPSVDDTEYDLALKELISLETLYPELITSDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SQKVG 65
>gi|229009789|ref|ZP_04167009.1| DNA ligase [Bacillus mycoides DSM 2048]
gi|228751407|gb|EEM01213.1| DNA ligase [Bacillus mycoides DSM 2048]
Length = 669
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK A +E L + Y+ LDNP +D YDR + L L+ + PE ED P
Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRDMQELIKLEAENPEFMSEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SIRVG 65
>gi|222086432|ref|YP_002544966.1| DNA ligase, NAD-dependent [Agrobacterium radiobacter K84]
gi|254781247|sp|B9JH39|DNLJ_AGRRK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|221723880|gb|ACM27036.1| DNA ligase, NAD-dependent [Agrobacterium radiobacter K84]
Length = 717
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 34/73 (46%)
Query: 46 DKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFP 105
+ K V L++ EA + YL + Y+ D P +D YD + R DA++ +FP
Sbjct: 3 SEQKPVEDLTEEEAAAALAYLAAEIARNDALYHGNDAPEISDAEYDALKRRNDAIEARFP 62
Query: 106 ELFDEDHPWNTVG 118
L D P VG
Sbjct: 63 ALVRADSPSRRVG 75
>gi|164686703|ref|ZP_02210731.1| hypothetical protein CLOBAR_00298 [Clostridium bartlettii DSM
16795]
gi|164604093|gb|EDQ97558.1| hypothetical protein CLOBAR_00298 [Clostridium bartlettii DSM
16795]
Length = 674
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 32/60 (53%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
A +E L+ + +H + YY D+P D YD + + L L+E+ PEL D P N VG
Sbjct: 3 AQKRIEELINLINYHNEKYYNQDSPEIEDFEYDNLMKELIKLEEENPELKRNDSPSNRVG 62
>gi|329920507|ref|ZP_08277239.1| DNA ligase (NAD+) [Lactobacillus iners SPIN 1401G]
gi|328936183|gb|EGG32636.1| DNA ligase (NAD+) [Lactobacillus iners SPIN 1401G]
Length = 672
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
++ LS +A +EV L K YY D P+ D +YD+V ++L L++++P L D
Sbjct: 1 MSELSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLIDP 60
Query: 111 DHPWNTVG 118
D VG
Sbjct: 61 DSITQRVG 68
>gi|312875390|ref|ZP_07735394.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 2053A-b]
gi|311089053|gb|EFQ47493.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 2053A-b]
Length = 672
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
++ LS +A +EV L K YY D P+ D +YD+V ++L L++++P L D
Sbjct: 1 MSELSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLIDP 60
Query: 111 DHPWNTVG 118
D VG
Sbjct: 61 DSITQRVG 68
>gi|309808880|ref|ZP_07702761.1| DNA ligase (NAD+) [Lactobacillus iners LactinV 01V1-a]
gi|308167878|gb|EFO70015.1| DNA ligase (NAD+) [Lactobacillus iners LactinV 01V1-a]
Length = 672
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
++ LS +A +EV L K YY D P+ D +YD+V ++L L++++P L D
Sbjct: 1 MSELSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLIDP 60
Query: 111 DHPWNTVG 118
D VG
Sbjct: 61 DSITQRVG 68
>gi|239982451|ref|ZP_04704975.1| NAD-dependent DNA ligase LigA [Streptomyces albus J1074]
Length = 728
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
+A ++L + H+ YY D P+ +D +DR L L+EQ+P L D P
Sbjct: 11 PADARERHKHLAEQVEEHRFRYYVNDQPVVSDAEFDRQLRALTQLEEQYPPLRTPDSPTQ 70
Query: 116 TV 117
V
Sbjct: 71 KV 72
>gi|256390514|ref|YP_003112078.1| DNA ligase, NAD-dependent [Catenulispora acidiphila DSM 44928]
gi|256356740|gb|ACU70237.1| DNA ligase, NAD-dependent [Catenulispora acidiphila DSM 44928]
Length = 723
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 29/67 (43%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
+ + + L + + + YY LD P +D +D +L+A+++ PEL
Sbjct: 1 MDETTAATPAQQHAALAEEIENARYRYYVLDAPTISDADFDVKLRQLEAIEDANPELRTP 60
Query: 111 DHPWNTV 117
D P V
Sbjct: 61 DSPTQKV 67
>gi|146318834|ref|YP_001198546.1| NAD-dependent DNA ligase LigA [Streptococcus suis 05ZYH33]
gi|166216250|sp|A4VVK7|DNLJ_STRSY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|145689640|gb|ABP90146.1| NAD-dependent DNA ligase (contains BRCT domain type II)
[Streptococcus suis 05ZYH33]
Length = 652
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 28/59 (47%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV + + K YY+LD P +D YD + L L+ PEL D P + VG
Sbjct: 2 KTRISELVSVLNQYAKEYYQLDQPSVSDAEYDTLYRELVELETAHPELILPDSPTHRVG 60
>gi|148263373|ref|YP_001230079.1| DNA ligase, NAD-dependent [Geobacter uraniireducens Rf4]
gi|190359259|sp|A5GA98|DNLJ_GEOUR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|146396873|gb|ABQ25506.1| DNA ligase, NAD-dependent [Geobacter uraniireducens Rf4]
Length = 672
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 28/65 (43%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K A ++ L K H YY D P D YD + L L++ +P+L D P
Sbjct: 1 MDKQAAERRIQELHKEINRHNYLYYVEDRPEINDAEYDLLLRELQQLEKAYPDLVTADSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|85059656|ref|YP_455358.1| NAD-dependent DNA ligase LigA [Sodalis glossinidius str.
'morsitans']
gi|123766419|sp|Q2NSC2|DNLJ_SODGM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|84780176|dbj|BAE74953.1| DNA ligase [Sodalis glossinidius str. 'morsitans']
Length = 678
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 24/62 (38%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ + L K H + YY P D YDR L L+ + P+L D P
Sbjct: 2 EQIEQHILRLRKQLRHWEYLYYVEAAPEVPDSEYDRFMAELRTLEAERPDLLTADSPSQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|166216285|sp|Q03JF6|DNLJ_STRTD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
Length = 652
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ LV + K YY DNP +D YD++ L L+ + PEL D P + VG
Sbjct: 2 EKRMKELVDKLNQYAKEYYTEDNPSVSDAEYDKLYRELVTLEAEHPELVQADSPTHRVG 60
>gi|229131294|ref|ZP_04260196.1| DNA ligase [Bacillus cereus BDRD-ST196]
gi|228652180|gb|EEL08115.1| DNA ligase [Bacillus cereus BDRD-ST196]
Length = 669
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK A +E L + Y+ LDNP +D YDR + L L+ + PE ED P
Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRDMQELIKLEAENPEFMSEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SIRVG 65
>gi|146321044|ref|YP_001200755.1| NAD-dependent DNA ligase LigA [Streptococcus suis 98HAH33]
gi|253751920|ref|YP_003025061.1| DNA ligase [Streptococcus suis SC84]
gi|253753743|ref|YP_003026884.1| DNA ligase [Streptococcus suis P1/7]
gi|253755379|ref|YP_003028519.1| DNA ligase [Streptococcus suis BM407]
gi|166216248|sp|A4W1W6|DNLJ_STRS2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|145691850|gb|ABP92355.1| NAD-dependent DNA ligase (contains BRCT domain type II)
[Streptococcus suis 98HAH33]
gi|251816209|emb|CAZ51836.1| DNA ligase [Streptococcus suis SC84]
gi|251817843|emb|CAZ55596.1| DNA ligase [Streptococcus suis BM407]
gi|251819989|emb|CAR46142.1| DNA ligase [Streptococcus suis P1/7]
gi|292558495|gb|ADE31496.1| NAD-dependent DNA ligase [Streptococcus suis GZ1]
gi|319758281|gb|ADV70223.1| NAD-dependent DNA ligase LigA [Streptococcus suis JS14]
Length = 652
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 28/59 (47%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV + + K YY+LD P +D YD + L L+ PEL D P + VG
Sbjct: 2 KTRISELVSVLNQYAKEYYQLDQPSVSDAEYDTLYRELVELETAHPELILPDSPTHRVG 60
>gi|265764018|ref|ZP_06092586.1| DNA ligase, NAD-dependent [Bacteroides sp. 2_1_16]
gi|263256626|gb|EEZ27972.1| DNA ligase, NAD-dependent [Bacteroides sp. 2_1_16]
Length = 665
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++E L H YY L+ P +D +D + L L+++ PE DE+ P VG
Sbjct: 3 VKEKIEQLRLQLHQHNYNYYVLNAPEISDKEFDDLMRELQDLEQEHPEYKDENSPTMRVG 62
>gi|260584784|ref|ZP_05852529.1| DNA ligase, NAD-dependent [Granulicatella elegans ATCC 700633]
gi|260157441|gb|EEW92512.1| DNA ligase, NAD-dependent [Granulicatella elegans ATCC 700633]
Length = 668
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 25/60 (41%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+V+ L + YY D P TD YD L L+ ++P+L D P VG
Sbjct: 5 IEQKVQQLREQLNRWSHEYYVQDRPTVTDHEYDETYHELVRLETEYPQLVTSDSPTQRVG 64
>gi|163938297|ref|YP_001643181.1| NAD-dependent DNA ligase LigA [Bacillus weihenstephanensis KBAB4]
gi|229165272|ref|ZP_04293059.1| DNA ligase [Bacillus cereus AH621]
gi|254781256|sp|A9VRG3|DNLJ_BACWK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|163860494|gb|ABY41553.1| DNA ligase, NAD-dependent [Bacillus weihenstephanensis KBAB4]
gi|228618097|gb|EEK75135.1| DNA ligase [Bacillus cereus AH621]
Length = 669
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK A +E L + Y+ LDNP +D YDR + L L+ + PE ED P
Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRDMQELIKLEAENPEFMSEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SIRVG 65
>gi|60681965|ref|YP_212109.1| putative DNA ligase [Bacteroides fragilis NCTC 9343]
gi|81314971|sp|Q5LCI0|DNLJ_BACFN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|60493399|emb|CAH08185.1| putative DNA ligase [Bacteroides fragilis NCTC 9343]
Length = 665
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++E L H YY L+ P +D +D + L L+++ PE DE+ P VG
Sbjct: 3 VKEKIEQLRLQLHQHNYNYYVLNAPEISDKEFDDLMRELQDLEQEHPEYKDENSPTMRVG 62
>gi|53713694|ref|YP_099686.1| DNA ligase [Bacteroides fragilis YCH46]
gi|81382396|sp|Q64TM7|DNLJ_BACFR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|52216559|dbj|BAD49152.1| DNA ligase [Bacteroides fragilis YCH46]
Length = 665
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++E L H YY L+ P +D +D + L L+++ PE DE+ P VG
Sbjct: 3 VKEKIEQLRLQLHQHNYNYYVLNAPEISDKEFDDLMRELQDLEQEHPEYKDENSPTMRVG 62
>gi|283458551|ref|YP_003363181.1| NAD-dependent DNA ligase [Rothia mucilaginosa DY-18]
gi|283134596|dbj|BAI65361.1| NAD-dependent DNA ligase [Rothia mucilaginosa DY-18]
Length = 747
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Query: 38 KRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERL 97
RA + A+ +++ E L ++ YY D P +D YD + RL
Sbjct: 15 TRAESPAENAAENTAEITEA-LRAEYAELTDKIRAARRAYYNEDAPFLSDAEYDALYRRL 73
Query: 98 DALQEQFPELFDEDHPWNTVG 118
+ ++ + P L D P VG
Sbjct: 74 EIIEAEHPHLIANDSPTQEVG 94
>gi|301163404|emb|CBW22954.1| putative DNA ligase [Bacteroides fragilis 638R]
Length = 665
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++E L H YY L+ P +D +D + L L+++ PE DE+ P VG
Sbjct: 3 VKEKIEQLRLQLHQHNYNYYVLNAPEISDKEFDDLMRELQDLEQEHPEYKDENSPTMRVG 62
>gi|325911416|ref|ZP_08173828.1| DNA ligase (NAD+) [Lactobacillus iners UPII 143-D]
gi|325476766|gb|EGC79920.1| DNA ligase (NAD+) [Lactobacillus iners UPII 143-D]
Length = 672
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
++ LS +A +EV L K YY D P+ D +YD+V ++L L++++P L D
Sbjct: 1 MSELSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLIDP 60
Query: 111 DHPWNTVG 118
D VG
Sbjct: 61 DSITQRVG 68
>gi|302023934|ref|ZP_07249145.1| NAD-dependent DNA ligase LigA [Streptococcus suis 05HAS68]
gi|330832985|ref|YP_004401810.1| NAD-dependent DNA ligase LigA [Streptococcus suis ST3]
gi|329307208|gb|AEB81624.1| NAD-dependent DNA ligase LigA [Streptococcus suis ST3]
Length = 652
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 28/59 (47%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV + + K YY+LD P +D YD + L L+ PEL D P + VG
Sbjct: 2 KTRISELVSVLNQYAKEYYQLDQPSVSDAEYDTLYRELVELETAHPELILPDSPTHRVG 60
>gi|294673321|ref|YP_003573937.1| DNA ligase (NAD(+)) [Prevotella ruminicola 23]
gi|294473291|gb|ADE82680.1| DNA ligase (NAD(+)) [Prevotella ruminicola 23]
Length = 674
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 27/59 (45%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ +E L K H YY L+ P D +D + L L+ + PE+ D + P VG
Sbjct: 4 IKRIEQLRKELHEHNYKYYVLNQPTIGDQEFDFMMHELQDLEAKHPEMADPNSPTQRVG 62
>gi|223932796|ref|ZP_03624793.1| DNA ligase, NAD-dependent [Streptococcus suis 89/1591]
gi|223898505|gb|EEF64869.1| DNA ligase, NAD-dependent [Streptococcus suis 89/1591]
Length = 652
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 28/59 (47%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV + + K YY+LD P +D YD + L L+ PEL D P + VG
Sbjct: 2 KTRISELVSVLNQYAKEYYQLDQPSVSDAEYDTLYRELVELETAHPELILPDSPTHRVG 60
>gi|315653834|ref|ZP_07906750.1| NAD-dependent DNA ligase LigA [Lactobacillus iners ATCC 55195]
gi|315488530|gb|EFU78176.1| NAD-dependent DNA ligase LigA [Lactobacillus iners ATCC 55195]
Length = 672
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
++ LS +A +EV L K YY D P+ D +YD+V ++L L++++P L D
Sbjct: 1 MSELSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLIDP 60
Query: 111 DHPWNTVG 118
D VG
Sbjct: 61 DSITQRVG 68
>gi|291454298|ref|ZP_06593688.1| NAD-dependent DNA ligase LigA [Streptomyces albus J1074]
gi|291357247|gb|EFE84149.1| NAD-dependent DNA ligase LigA [Streptomyces albus J1074]
Length = 736
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
+A ++L + H+ YY D P+ +D +DR L L+EQ+P L D P
Sbjct: 19 PADARERHKHLAEQVEEHRFRYYVNDQPVVSDAEFDRQLRALTQLEEQYPPLRTPDSPTQ 78
Query: 116 TV 117
V
Sbjct: 79 KV 80
>gi|83951899|ref|ZP_00960631.1| DNA ligase, NAD-dependent [Roseovarius nubinhibens ISM]
gi|83836905|gb|EAP76202.1| DNA ligase, NAD-dependent [Roseovarius nubinhibens ISM]
Length = 748
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 34/74 (45%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
+ + V L++ A E+ L + Y+ D P +D YD + +R ++ +F
Sbjct: 1 MAETTAVERLTEDAARAELARLADLLQRANAAYHGADAPEISDAEYDALKQRNAEIEARF 60
Query: 105 PELFDEDHPWNTVG 118
PEL +D P VG
Sbjct: 61 PELKRDDSPSEQVG 74
>gi|259501108|ref|ZP_05744010.1| DNA ligase [Lactobacillus iners DSM 13335]
gi|302190444|ref|ZP_07266698.1| DNA ligase [Lactobacillus iners AB-1]
gi|259167802|gb|EEW52297.1| DNA ligase [Lactobacillus iners DSM 13335]
Length = 672
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
++ LS +A +EV L K YY D P+ D +YD+V ++L L++++P L D
Sbjct: 1 MSELSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLIDP 60
Query: 111 DHPWNTVG 118
D VG
Sbjct: 61 DSITQRVG 68
>gi|220904693|ref|YP_002480005.1| DNA ligase, NAD-dependent [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
gi|254781312|sp|B8J0Q0|DNLJ_DESDA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|219868992|gb|ACL49327.1| DNA ligase, NAD-dependent [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
Length = 712
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 28/62 (45%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
GE V++L H Y+ LD P +D +D + L L+ ++PEL P
Sbjct: 23 GEERRRVQWLTAELERHNHLYHTLDRPEISDDQFDALFRELQDLETRWPELRSLHSPTLR 82
Query: 117 VG 118
VG
Sbjct: 83 VG 84
>gi|55821530|ref|YP_139972.1| NAD-dependent DNA ligase LigA [Streptococcus thermophilus LMG
18311]
gi|55823458|ref|YP_141899.1| NAD-dependent DNA ligase LigA [Streptococcus thermophilus CNRZ1066]
gi|81559086|sp|Q5LYL9|DNLJ_STRT1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|81560280|sp|Q5M382|DNLJ_STRT2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|55737515|gb|AAV61157.1| DNA ligase [Streptococcus thermophilus LMG 18311]
gi|55739443|gb|AAV63084.1| DNA ligase [Streptococcus thermophilus CNRZ1066]
Length = 652
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ LV + K YY DNP +D YD++ L L+ + PEL D P + VG
Sbjct: 2 EKRMKELVDKLNQYAKEYYTEDNPSVSDAEYDKLYRELVTLEAEHPELVQADSPTHRVG 60
>gi|309804542|ref|ZP_07698607.1| DNA ligase (NAD+) [Lactobacillus iners LactinV 09V1-c]
gi|309809394|ref|ZP_07703256.1| DNA ligase (NAD+) [Lactobacillus iners SPIN 2503V10-D]
gi|312873385|ref|ZP_07733436.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 2052A-d]
gi|308165934|gb|EFO68152.1| DNA ligase (NAD+) [Lactobacillus iners LactinV 09V1-c]
gi|308170305|gb|EFO72336.1| DNA ligase (NAD+) [Lactobacillus iners SPIN 2503V10-D]
gi|311091069|gb|EFQ49462.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 2052A-d]
Length = 672
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
++ LS +A +EV L K YY D P+ D +YD+V ++L L++++P L D
Sbjct: 1 MSELSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLIDP 60
Query: 111 DHPWNTVG 118
D VG
Sbjct: 61 DSITQRVG 68
>gi|24216818|ref|NP_714299.1| NAD dependent DNA ligase [Leptospira interrogans serovar Lai str.
56601]
gi|81465271|sp|Q8EYU4|DNLJ_LEPIN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|24198185|gb|AAN51317.1| NAD dependent DNA ligase [Leptospira interrogans serovar Lai str.
56601]
Length = 681
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 42 ESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQ 101
+ D K +LS+ EA + L HHQ YY ++P +D +D++ RL L+
Sbjct: 3 KKKEDSQK---TLSEKEAKGLIAKLSDEIRHHQYLYYVKNDPKISDFDFDQLFRRLQDLE 59
Query: 102 EQFPELFDEDHPWNTVG 118
E+FP+ D P VG
Sbjct: 60 EEFPQFKDLASPTLVVG 76
>gi|186680717|ref|YP_001863913.1| NAD-dependent DNA ligase LigA [Nostoc punctiforme PCC 73102]
gi|254781381|sp|B2J3P0|DNLJ_NOSP7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|186463169|gb|ACC78970.1| DNA ligase, NAD-dependent [Nostoc punctiforme PCC 73102]
Length = 678
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ E L ++ YY LD P+ D +YD++ L L+ Q+PEL D P VG
Sbjct: 8 VKRTEELRQLLQQASYAYYVLDTPIMEDSVYDQLYRELQQLEIQYPELTAPDSPTQRVG 66
>gi|303239321|ref|ZP_07325849.1| DNA ligase, NAD-dependent [Acetivibrio cellulolyticus CD2]
gi|302593107|gb|EFL62827.1| DNA ligase, NAD-dependent [Acetivibrio cellulolyticus CD2]
Length = 663
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 30/61 (49%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+ +E L K +H YY D+ +D YD++S L L+++ PEL + P V
Sbjct: 2 DIKKRIEELRKTIEYHNDRYYNQDDAEISDYEYDQLSLELRKLEQEHPELALTNSPTQKV 61
Query: 118 G 118
G
Sbjct: 62 G 62
>gi|86605509|ref|YP_474272.1| DNA ligase, NAD-dependent [Synechococcus sp. JA-3-3Ab]
gi|123765626|sp|Q2JW63|DNLJ_SYNJA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|86554051|gb|ABC99009.1| DNA ligase, NAD-dependent [Synechococcus sp. JA-3-3Ab]
Length = 673
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 24/59 (40%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L + YY D P+ D +YDR+ L L+ +PEL D P VG
Sbjct: 6 EQRARELRALLQKASIAYYVHDAPILEDSVYDRLYRELQELERAYPELITPDSPTQRVG 64
>gi|325295048|ref|YP_004281562.1| DNA ligase [Desulfurobacterium thermolithotrophum DSM 11699]
gi|325065496|gb|ADY73503.1| DNA ligase [Desulfurobacterium thermolithotrophum DSM 11699]
Length = 723
Score = 88.8 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 32/65 (49%)
Query: 53 SLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDH 112
LS EA E L K+ +H YY L +P+ +D YD++ L+ L++ E+ D
Sbjct: 31 KLSTEEAKELAEKLRKVIRYHDYKYYVLASPVISDYQYDKLFHALEDLEKVHSEIITPDS 90
Query: 113 PWNTV 117
P +
Sbjct: 91 PTQRI 95
>gi|281414409|ref|ZP_06246151.1| DNA ligase, NAD-dependent [Micrococcus luteus NCTC 2665]
Length = 248
Score = 88.8 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 30/71 (42%)
Query: 48 AKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
+ + E E LV+ + YY+ D P +D YD + RL+ L+ PEL
Sbjct: 10 QPDPQDIPAADLREEYEDLVERVRAARTAYYQRDAPEISDAEYDALYRRLEDLEALHPEL 69
Query: 108 FDEDHPWNTVG 118
D P VG
Sbjct: 70 VSNDSPTQEVG 80
>gi|290957204|ref|YP_003488386.1| DNA ligase [Streptomyces scabiei 87.22]
gi|260646730|emb|CBG69827.1| putative DNA ligase [Streptomyces scabiei 87.22]
Length = 739
Score = 88.8 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 28/58 (48%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+ L + H+ YY D P+ +D +D + L+AL++++ EL D P V
Sbjct: 23 REKHARLAEQIEEHRFRYYVKDAPVVSDAEFDELLRTLEALEDEYGELRTPDSPTQKV 80
>gi|45659103|ref|YP_003189.1| NAD dependent DNA ligase [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|81406496|sp|Q72MA6|DNLJ_LEPIC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|45602349|gb|AAS71826.1| NAD dependent DNA ligase [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
Length = 681
Score = 88.8 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 42 ESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQ 101
+ D K +LS+ EA + L HHQ YY ++P +D +D++ RL L+
Sbjct: 3 KKKEDSQK---TLSEKEAKGLIAKLSDEIRHHQYLYYVKNDPKISDFDFDQLFRRLQDLE 59
Query: 102 EQFPELFDEDHPWNTVG 118
E+FP+ D P VG
Sbjct: 60 EEFPQFKDLASPTLVVG 76
>gi|332141273|ref|YP_004427011.1| NAD-dependent DNA ligase [Alteromonas macleodii str. 'Deep
ecotype']
gi|327551295|gb|AEA98013.1| NAD-dependent DNA ligase [Alteromonas macleodii str. 'Deep
ecotype']
Length = 171
Score = 88.8 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 32/64 (50%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
+ +A +V L + YY LD+P D +YDR + L AL++Q+P L + P
Sbjct: 4 TLEQARKKVAELRNTLNEYNYQYYVLDDPSIPDAVYDRDMQSLIALEKQYPSLQSPNSPS 63
Query: 115 NTVG 118
VG
Sbjct: 64 QKVG 67
>gi|309803834|ref|ZP_07697919.1| DNA ligase (NAD+) [Lactobacillus iners LactinV 11V1-d]
gi|312870780|ref|ZP_07730886.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 3008A-a]
gi|312873110|ref|ZP_07733169.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 2062A-h1]
gi|308164068|gb|EFO66330.1| DNA ligase (NAD+) [Lactobacillus iners LactinV 11V1-d]
gi|311091343|gb|EFQ49728.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 2062A-h1]
gi|311093656|gb|EFQ51994.1| DNA ligase (NAD+) [Lactobacillus iners LEAF 3008A-a]
Length = 672
Score = 88.4 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
++ LS +A +EV L K YY D P+ D +YD+V ++L L++++P L D
Sbjct: 1 MSELSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLIDP 60
Query: 111 DHPWNTVG 118
D VG
Sbjct: 61 DSITQRVG 68
>gi|256839697|ref|ZP_05545206.1| DNA ligase, NAD-dependent [Parabacteroides sp. D13]
gi|256738627|gb|EEU51952.1| DNA ligase, NAD-dependent [Parabacteroides sp. D13]
Length = 664
Score = 88.4 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 26/60 (43%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L H YY L P +D +D++ + L L+ PE D D P VG
Sbjct: 2 VEAKIKALRDELERHNYNYYVLSAPTISDFEFDKMMKELQELEAAHPEFADPDSPTRRVG 61
>gi|302670775|ref|YP_003830735.1| NAD-dependent DNA ligase LigA1 [Butyrivibrio proteoclasticus B316]
gi|302395248|gb|ADL34153.1| NAD-dependent DNA ligase LigA1 [Butyrivibrio proteoclasticus B316]
Length = 675
Score = 88.4 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 29/62 (46%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
E + LV HH YY D P +D YD++ RL ++ ++PEL D P
Sbjct: 6 EEIRNNYDALVSEIKHHMDLYYNQDEPEISDYEYDQLMIRLKKMESEYPELVSNDSPSQI 65
Query: 117 VG 118
VG
Sbjct: 66 VG 67
>gi|150007448|ref|YP_001302191.1| DNA ligase [Parabacteroides distasonis ATCC 8503]
gi|298375424|ref|ZP_06985381.1| DNA ligase, NAD-dependent [Bacteroides sp. 3_1_19]
gi|166216223|sp|A6LA55|DNLJ_PARD8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|149935872|gb|ABR42569.1| DNA ligase [Parabacteroides distasonis ATCC 8503]
gi|298267924|gb|EFI09580.1| DNA ligase, NAD-dependent [Bacteroides sp. 3_1_19]
Length = 664
Score = 88.4 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 26/60 (43%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L H YY L P +D +D++ + L L+ PE D D P VG
Sbjct: 2 VEAKIKALRDELERHNYNYYVLSAPTISDFEFDKMMKELQELEAAHPEFADPDSPTRRVG 61
>gi|265753576|ref|ZP_06088931.1| DNA ligase, NAD-dependent [Bacteroides sp. 3_1_33FAA]
gi|263235290|gb|EEZ20814.1| DNA ligase, NAD-dependent [Bacteroides sp. 3_1_33FAA]
Length = 665
Score = 88.4 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ ++ L + H YY L+ P TD +D++ L L+E+ PE DE+ P VG
Sbjct: 4 IERIDQLREELHRHNYNYYVLNAPEITDQEFDKLMRELQDLEEKHPEHRDENSPSMRVG 62
>gi|255013963|ref|ZP_05286089.1| DNA ligase [Bacteroides sp. 2_1_7]
gi|301310547|ref|ZP_07216486.1| DNA ligase, NAD-dependent [Bacteroides sp. 20_3]
gi|300832121|gb|EFK62752.1| DNA ligase, NAD-dependent [Bacteroides sp. 20_3]
Length = 664
Score = 88.4 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 26/60 (43%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L H YY L P +D +D++ + L L+ PE D D P VG
Sbjct: 2 VEAKIKALRDELERHNYNYYVLSAPTISDFEFDKMMKELQELEAAHPEFADPDSPTRRVG 61
>gi|331703733|ref|YP_004400420.1| DNA ligase [Mycoplasma mycoides subsp. capri LC str. 95010]
gi|328802288|emb|CBW54442.1| DNA ligase [Mycoplasma mycoides subsp. capri LC str. 95010]
Length = 668
Score = 88.4 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 32/65 (49%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK +A++ + L + K YY DNP D YD + L +L+ +PEL D P
Sbjct: 1 MSKDKALLRINQLKEQLNLWSKQYYVDDNPSVDDIEYDLALKELISLETLYPELITSDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SQKVG 65
>gi|262382012|ref|ZP_06075150.1| DNA ligase, NAD-dependent [Bacteroides sp. 2_1_33B]
gi|262297189|gb|EEY85119.1| DNA ligase, NAD-dependent [Bacteroides sp. 2_1_33B]
Length = 664
Score = 88.4 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 26/60 (43%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L H YY L P +D +D++ + L L+ PE D D P VG
Sbjct: 2 VEAKIKALRDELERHNYNYYVLSAPTISDFEFDKMMKELQELEAAHPEFADPDSPTRRVG 61
>gi|212693183|ref|ZP_03301311.1| hypothetical protein BACDOR_02690 [Bacteroides dorei DSM 17855]
gi|212664288|gb|EEB24860.1| hypothetical protein BACDOR_02690 [Bacteroides dorei DSM 17855]
Length = 665
Score = 88.4 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ ++ L + H YY L+ P TD +D++ L L+E+ PE DE+ P VG
Sbjct: 4 IERIDQLREELHRHNYNYYVLNAPEITDQEFDKLMRELQDLEEKHPEHRDENSPSMRVG 62
>gi|168705071|ref|ZP_02737348.1| NAD-dependent DNA ligase [Gemmata obscuriglobus UQM 2246]
Length = 678
Score = 88.4 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 23/59 (38%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L K HH YY P+ +D +D + + L ++ P L D P VG
Sbjct: 10 AERAAELRKQLDHHNYLYYVEAAPVISDREFDTLLKELADIERANPGLVTPDSPTQRVG 68
>gi|319946751|ref|ZP_08020985.1| NAD-dependent DNA ligase LigA [Streptococcus australis ATCC 700641]
gi|319746799|gb|EFV99058.1| NAD-dependent DNA ligase LigA [Streptococcus australis ATCC 700641]
Length = 652
Score = 88.4 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ LV + H+ + YY D P +D YD++ L AL+E PEL + P + VG
Sbjct: 2 ETRMKELVTLLNHYAEEYYTKDAPSVSDYEYDKLYRELVALEEAHPELVQPNSPTHRVG 60
>gi|237709923|ref|ZP_04540404.1| DNA ligase [Bacteroides sp. 9_1_42FAA]
gi|229456016|gb|EEO61737.1| DNA ligase [Bacteroides sp. 9_1_42FAA]
Length = 665
Score = 88.4 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ ++ L + H YY L+ P TD +D++ L L+E+ PE DE+ P VG
Sbjct: 4 IERIDQLREELHRHNYNYYVLNAPEITDQEFDKLMRELQDLEEKHPEHRDENSPSMRVG 62
>gi|325972726|ref|YP_004248917.1| DNA ligase, NAD-dependent [Spirochaeta sp. Buddy]
gi|324027964|gb|ADY14723.1| DNA ligase, NAD-dependent [Spirochaeta sp. Buddy]
Length = 696
Score = 88.4 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 34/61 (55%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E E+ LV+ +QK YY + PL +D YDR+ +RL AL+ Q+P L D P V
Sbjct: 3 ELEHEIHSLVEQLASYQKAYYVDNRPLVSDLEYDRLFDRLVALETQYPHLKLADSPTQRV 62
Query: 118 G 118
G
Sbjct: 63 G 63
>gi|256383839|gb|ACU78409.1| DNA ligase, NAD-dependent [Mycoplasma mycoides subsp. capri str.
GM12]
gi|256384670|gb|ACU79239.1| DNA ligase, NAD-dependent [Mycoplasma mycoides subsp. capri str.
GM12]
gi|296455996|gb|ADH22231.1| DNA ligase, NAD-dependent [synthetic Mycoplasma mycoides
JCVI-syn1.0]
Length = 668
Score = 88.4 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 32/65 (49%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK +A++ + L + K YY DNP D YD + L +L+ +PEL D P
Sbjct: 1 MSKDKALLRINQLKEQLNLWSKQYYVDDNPSVDDIEYDLALKELISLETLYPELITSDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SQKVG 65
>gi|314966144|gb|EFT10243.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL082PA2]
Length = 740
Score = 88.4 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 25/56 (44%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L + L Q YY D P +D YDR+ L +++ PEL D P VG
Sbjct: 24 WTELAQRILDAQDAYYASDAPTISDAEYDRLMVELKKVEDDHPELRTPDSPTQRVG 79
>gi|150005810|ref|YP_001300554.1| DNA ligase [Bacteroides vulgatus ATCC 8482]
gi|237725408|ref|ZP_04555889.1| DNA ligase [Bacteroides sp. D4]
gi|319640984|ref|ZP_07995691.1| DNA ligase [Bacteroides sp. 3_1_40A]
gi|166215396|sp|A6L5G8|DNLJ_BACV8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|149934234|gb|ABR40932.1| DNA ligase [Bacteroides vulgatus ATCC 8482]
gi|229436095|gb|EEO46172.1| DNA ligase [Bacteroides dorei 5_1_36/D4]
gi|317387362|gb|EFV68234.1| DNA ligase [Bacteroides sp. 3_1_40A]
Length = 665
Score = 88.4 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ ++ L + H YY L+ P TD +D++ L L+E+ PE DE+ P VG
Sbjct: 4 IERIDQLREELHRHNYNYYVLNAPEITDQEFDKLMRELQDLEEKHPEHRDENSPSMRVG 62
>gi|225025741|ref|ZP_03714933.1| hypothetical protein EIKCOROL_02645 [Eikenella corrodens ATCC
23834]
gi|224941522|gb|EEG22731.1| hypothetical protein EIKCOROL_02645 [Eikenella corrodens ATCC
23834]
Length = 778
Score = 88.4 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 27/59 (45%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV+ + YY LD P D YDR+ L+AL+ + P+ + P VG
Sbjct: 5 QQRIRTLVQTLNRYAHEYYTLDAPSVPDAEYDRLYRELEALEAEHPQFRLPESPTQRVG 63
>gi|294776463|ref|ZP_06741938.1| DNA ligase (NAD(+)) [Bacteroides vulgatus PC510]
gi|294449660|gb|EFG18185.1| DNA ligase (NAD(+)) [Bacteroides vulgatus PC510]
Length = 665
Score = 88.4 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ ++ L + H YY L+ P TD +D++ L L+E+ PE DE+ P VG
Sbjct: 4 IERIDQLREELHRHNYNYYVLNAPEITDQEFDKLMRELQDLEEKHPEHRDENSPSMRVG 62
>gi|254882009|ref|ZP_05254719.1| polydeoxyribonucleotide synthase [Bacteroides sp. 4_3_47FAA]
gi|254834802|gb|EET15111.1| polydeoxyribonucleotide synthase [Bacteroides sp. 4_3_47FAA]
Length = 665
Score = 88.4 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ ++ L + H YY L+ P TD +D++ L L+E+ PE DE+ P VG
Sbjct: 4 IERIDQLREELHRHNYNYYVLNAPEITDQEFDKLMRELQDLEEKHPEHRDENSPSMRVG 62
>gi|315095035|gb|EFT67011.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL060PA1]
Length = 740
Score = 88.4 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 25/56 (44%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L + L Q YY D P +D YDR+ L +++ PEL D P VG
Sbjct: 24 WTELAQRILDAQDAYYASDAPTISDAEYDRLMVELKKVEDDHPELRTPDSPTQRVG 79
>gi|314923733|gb|EFS87564.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL001PA1]
gi|315104373|gb|EFT76349.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL050PA2]
gi|327328187|gb|EGE69956.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL103PA1]
Length = 740
Score = 88.4 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 25/56 (44%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L + L Q YY D P +D YDR+ L +++ PEL D P VG
Sbjct: 24 WTELAQRILDAQDAYYASDAPTISDAEYDRLMVELKKVEDDHPELRTPDSPTQRVG 79
>gi|282854737|ref|ZP_06264072.1| DNA ligase (NAD(+)) [Propionibacterium acnes J139]
gi|282582319|gb|EFB87701.1| DNA ligase (NAD(+)) [Propionibacterium acnes J139]
gi|314982008|gb|EFT26101.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL110PA3]
gi|315090823|gb|EFT62799.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL110PA4]
Length = 740
Score = 88.4 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 25/56 (44%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L + L Q YY D P +D YDR+ L +++ PEL D P VG
Sbjct: 24 WTELAQRILDAQDAYYASDAPTISDAEYDRLMVELKKVEDDHPELRTPDSPTQRVG 79
>gi|257125939|ref|YP_003164053.1| DNA ligase, NAD-dependent [Leptotrichia buccalis C-1013-b]
gi|257049878|gb|ACV39062.1| DNA ligase, NAD-dependent [Leptotrichia buccalis C-1013-b]
Length = 706
Score = 88.4 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF- 108
+++ + + + L +H YY DNP+ +D YD + L L++++PEL
Sbjct: 17 NEKNINFSKIQEKYKKLRNEIEYHNNLYYNEDNPIISDMEYDALMRELKQLEQEYPELLE 76
Query: 109 -DEDHPWNTVG 118
E+ P +G
Sbjct: 77 NSENSPTKKIG 87
>gi|260904918|ref|ZP_05913240.1| DNA ligase, NAD-dependent [Brevibacterium linens BL2]
Length = 729
Score = 88.4 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 50 KVTSLSKGEAMIE-VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF 108
+ LS A + LV+ + YY+ D+PL D YD + RL+ L+E+FPEL
Sbjct: 12 DTSDLSDATARAQAHADLVEKIEEQRAAYYKDDSPLVADAEYDDLVHRLEDLEEKFPELV 71
Query: 109 DEDHPWNTVG 118
+ P TVG
Sbjct: 72 TDSSPTQTVG 81
>gi|325278944|ref|YP_004251486.1| DNA ligase [Odoribacter splanchnicus DSM 20712]
gi|324310753|gb|ADY31306.1| DNA ligase [Odoribacter splanchnicus DSM 20712]
Length = 829
Score = 88.4 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L K +H YY + P +D +D + L+ L+E++PE++D + P VG
Sbjct: 5 KDRILELRKALEYHNYKYYIENAPEISDREFDGLMHDLEKLEEKYPEMYDPNSPTQRVG 63
>gi|229188563|ref|ZP_04315602.1| DNA ligase [Bacillus cereus ATCC 10876]
gi|228594752|gb|EEK52532.1| DNA ligase [Bacillus cereus ATCC 10876]
Length = 669
Score = 88.0 bits (217), Expect = 3e-16, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 30/65 (46%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK +E L + Y+ LDNP +D YDR + L L+ + PE ED P
Sbjct: 1 MSKEIVKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SVRVG 65
>gi|86608809|ref|YP_477571.1| DNA ligase, NAD-dependent [Synechococcus sp. JA-2-3B'a(2-13)]
gi|123724461|sp|Q2JLU3|DNLJ_SYNJB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|86557351|gb|ABD02308.1| DNA ligase, NAD-dependent [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 686
Score = 88.0 bits (217), Expect = 3e-16, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 24/59 (40%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L + YY D P+ D +YDR+ L L+ +PEL D P VG
Sbjct: 6 EERARELRTLLQKASIAYYVHDAPILEDSVYDRLYRELQELERAYPELVTPDSPTQRVG 64
>gi|304321380|ref|YP_003855023.1| NAD-dependent DNA ligase [Parvularcula bermudensis HTCC2503]
gi|303300282|gb|ADM09881.1| NAD-dependent DNA ligase [Parvularcula bermudensis HTCC2503]
Length = 727
Score = 88.0 bits (217), Expect = 3e-16, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 52 TSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
LS+ EA E+ L Y D P+ TD YD + R +A++ +FP L D
Sbjct: 8 EELSEAEAADELARLAHEMAAADIAYENAD-PVMTDAAYDALRRRNEAIEARFPHLRRAD 66
Query: 112 HPWNTVG 118
P VG
Sbjct: 67 SPSLRVG 73
>gi|212703192|ref|ZP_03311320.1| hypothetical protein DESPIG_01234 [Desulfovibrio piger ATCC 29098]
gi|212673458|gb|EEB33941.1| hypothetical protein DESPIG_01234 [Desulfovibrio piger ATCC 29098]
Length = 729
Score = 88.0 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 28/62 (45%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
+ + +L I HH Y+ LD P+ +D YD + L AL+E +P+ P
Sbjct: 54 RDRPQERMAWLTTILEHHNYLYHTLDKPVISDDQYDALFRELKALEEDYPQWRSPHSPTL 113
Query: 116 TV 117
V
Sbjct: 114 RV 115
>gi|257784913|ref|YP_003180130.1| DNA ligase, NAD-dependent [Atopobium parvulum DSM 20469]
gi|257473420|gb|ACV51539.1| DNA ligase, NAD-dependent [Atopobium parvulum DSM 20469]
Length = 705
Score = 88.0 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
+ +LS E L +I H YY LDNP TD +DR+ L L+ +PEL E
Sbjct: 1 MAALSPKE-TARAAELNRILNHAAYAYYALDNPELTDAEFDRLLIELQQLEAAYPELITE 59
Query: 111 DHPWNTVG 118
D VG
Sbjct: 60 DSYTQRVG 67
>gi|170016835|ref|YP_001727754.1| DNA ligase, NAD-dependent [Leuconostoc citreum KM20]
gi|254781358|sp|B1MXQ8|DNLJ_LEUCK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|169803692|gb|ACA82310.1| DNA ligase, NAD-dependent [Leuconostoc citreum KM20]
Length = 681
Score = 88.0 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 33/74 (44%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
L + V +L+ A E+ L K + YY D PL D +YD RL L+ QF
Sbjct: 2 LPEFTPVNNLTTQMAQQEIATLQKRLTDYGVAYYEEDAPLVEDYIYDAFYARLVLLEAQF 61
Query: 105 PELFDEDHPWNTVG 118
P+ D P VG
Sbjct: 62 PQFVTPDSPTQNVG 75
>gi|313836700|gb|EFS74414.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL037PA2]
gi|314929893|gb|EFS93724.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL044PA1]
gi|314972321|gb|EFT16418.1| DNA ligase, NAD-dependent [Propionibacterium acnes HL037PA3]
gi|328907750|gb|EGG27514.1| NAD-dependent DNA ligase LigA [Propionibacterium sp. P08]
Length = 740
Score = 88.0 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
EA L + L Q YY D P +D YD++ L +++ PEL D P
Sbjct: 18 AEARHRWTELAQRILDAQDAYYANDAPTMSDAAYDQLMVELKKVEDDHPELRSPDSPTQR 77
Query: 117 VG 118
VG
Sbjct: 78 VG 79
>gi|325288193|ref|YP_004263983.1| DNA ligase [Cellulophaga lytica DSM 7489]
gi|324323647|gb|ADY31112.1| DNA ligase [Cellulophaga lytica DSM 7489]
Length = 664
Score = 88.0 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 29/60 (48%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++E L + H YY LD P +D +D + L AL+ + PE +D + P VG
Sbjct: 3 VKEQIEALREELRKHNHNYYVLDTPTISDYDFDIKLKELQALEAKHPEFYDANSPTLRVG 62
>gi|226357440|ref|YP_002787179.1| NAD-dependent DNA ligase [Deinococcus deserti VCD115]
gi|254778147|sp|C1D1Y6|DNLJ1_DEIDV RecName: Full=DNA ligase 1; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] 1
gi|226319430|gb|ACO47425.1| putative NAD-dependent DNA ligase [Deinococcus deserti VCD115]
Length = 686
Score = 88.0 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 23/59 (38%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+L + H + YY D P D YD + L L+ + PE P TVG
Sbjct: 8 AERHAWLTQKVAEHNRRYYEEDAPTIPDFEYDALVRELRELEARHPEFAAPTSPAQTVG 66
>gi|167752039|ref|ZP_02424166.1| hypothetical protein ALIPUT_00281 [Alistipes putredinis DSM 17216]
gi|167660280|gb|EDS04410.1| hypothetical protein ALIPUT_00281 [Alistipes putredinis DSM 17216]
Length = 712
Score = 88.0 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 30/64 (46%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
+KG ++E L + +H YY ++P +D +D + L L+ PE D + P
Sbjct: 8 NKGMIREKIEELRRTLDYHNHKYYVENSPEISDREFDVLMRELQELEAAHPEYADPNSPT 67
Query: 115 NTVG 118
VG
Sbjct: 68 ARVG 71
>gi|239944478|ref|ZP_04696415.1| NAD-dependent DNA ligase LigA [Streptomyces roseosporus NRRL 15998]
gi|239990936|ref|ZP_04711600.1| NAD-dependent DNA ligase LigA [Streptomyces roseosporus NRRL 11379]
gi|291447943|ref|ZP_06587333.1| NAD-dependent DNA ligase LigA [Streptomyces roseosporus NRRL 15998]
gi|291350890|gb|EFE77794.1| NAD-dependent DNA ligase LigA [Streptomyces roseosporus NRRL 15998]
Length = 743
Score = 88.0 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
L + H+ YY D P+ +D +DR+ L+AL++++P L D P V
Sbjct: 24 LAEQIEEHRFRYYVKDQPVVSDAEFDRLLRSLEALEDEYPPLRTPDSPTQQV 75
>gi|196045221|ref|ZP_03112453.1| DNA ligase, NAD-dependent [Bacillus cereus 03BB108]
gi|196023805|gb|EDX62480.1| DNA ligase, NAD-dependent [Bacillus cereus 03BB108]
Length = 669
Score = 88.0 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 30/65 (46%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK +E L + Y+ LDNP +D YDR + L L+ + PE ED P
Sbjct: 1 MSKEIVKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SVRVG 65
>gi|206967609|ref|ZP_03228565.1| DNA ligase, NAD-dependent [Bacillus cereus AH1134]
gi|228950848|ref|ZP_04112971.1| DNA ligase [Bacillus thuringiensis serovar kurstaki str. T03a001]
gi|229068048|ref|ZP_04201356.1| DNA ligase [Bacillus cereus F65185]
gi|229077651|ref|ZP_04210281.1| DNA ligase [Bacillus cereus Rock4-2]
gi|229176884|ref|ZP_04304280.1| DNA ligase [Bacillus cereus 172560W]
gi|206736529|gb|EDZ53676.1| DNA ligase, NAD-dependent [Bacillus cereus AH1134]
gi|228606557|gb|EEK63982.1| DNA ligase [Bacillus cereus 172560W]
gi|228705592|gb|EEL57948.1| DNA ligase [Bacillus cereus Rock4-2]
gi|228715056|gb|EEL66923.1| DNA ligase [Bacillus cereus F65185]
gi|228808777|gb|EEM55273.1| DNA ligase [Bacillus thuringiensis serovar kurstaki str. T03a001]
Length = 669
Score = 88.0 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 30/65 (46%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK +E L + Y+ LDNP +D YDR + L L+ + PE ED P
Sbjct: 1 MSKEIVKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SVRVG 65
>gi|210630510|ref|ZP_03296493.1| hypothetical protein COLSTE_00378 [Collinsella stercoris DSM 13279]
gi|210160444|gb|EEA91415.1| hypothetical protein COLSTE_00378 [Collinsella stercoris DSM 13279]
Length = 756
Score = 88.0 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 65 YLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L + +H YY LD P +D +D++ L ++ PEL D VG
Sbjct: 53 ELRHLLDYHAYRYYALDAPEISDAAFDKLLIELQQIEAAHPELVTPDSYTQRVG 106
>gi|254430924|ref|ZP_05044627.1| DNA ligase, NAD-dependent [Cyanobium sp. PCC 7001]
gi|197625377|gb|EDY37936.1| DNA ligase, NAD-dependent [Cyanobium sp. PCC 7001]
Length = 667
Score = 88.0 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 27/57 (47%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L ++ YY LD P+ D +YDR+ L L++ PEL D P VG
Sbjct: 11 RIAELQRLLTQAAHAYYVLDAPVMEDPVYDRLYRELLELEQAHPELIRPDSPTQRVG 67
>gi|88703478|ref|ZP_01101194.1| DNA ligase [Congregibacter litoralis KT71]
gi|88702192|gb|EAQ99295.1| DNA ligase [Congregibacter litoralis KT71]
Length = 674
Score = 88.0 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 25/65 (38%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + V L + YY LD+P D YD L L+E PEL D P
Sbjct: 1 MPGDDIRNRVHSLREQLERWNHEYYILDSPTVPDQEYDGALRELQTLEEAHPELRDASSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|304384418|ref|ZP_07366824.1| NAD-dependent DNA ligase LigA [Prevotella marshii DSM 16973]
gi|304334516|gb|EFM00803.1| NAD-dependent DNA ligase LigA [Prevotella marshii DSM 16973]
Length = 680
Score = 88.0 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 6/77 (7%)
Query: 42 ESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQ 101
S L K+K + +E L + H YY L+ P D +D + L L+
Sbjct: 7 LSGLLKSKNMDD------KARIEQLRRDLHAHNYKYYVLNAPTIGDQEFDEMMHELQRLE 60
Query: 102 EQFPELFDEDHPWNTVG 118
PE D + P VG
Sbjct: 61 TLHPEWDDPNSPTQRVG 77
>gi|228476991|ref|ZP_04061629.1| DNA ligase, NAD-dependent [Streptococcus salivarius SK126]
gi|228251010|gb|EEK10181.1| DNA ligase, NAD-dependent [Streptococcus salivarius SK126]
Length = 652
Score = 88.0 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ LV + K YY DNP +D YD++ L AL+ ++PE D P + VG
Sbjct: 2 EKRMKELVVKLNQYAKEYYTEDNPSVSDAEYDKLYRELVALEAEYPEYVQADSPTHRVG 60
>gi|324324305|gb|ADY19565.1| NAD-dependent DNA ligase LigA [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 669
Score = 88.0 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 30/65 (46%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK +E L + Y+ LDNP +D YDR + L L+ + PE ED P
Sbjct: 1 MSKEIVKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SVRVG 65
>gi|295135415|ref|YP_003586091.1| DNA ligase [Zunongwangia profunda SM-A87]
gi|294983430|gb|ADF53895.1| DNA ligase [Zunongwangia profunda SM-A87]
Length = 812
Score = 88.0 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 30/61 (49%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+ ++ L + HH YY LDNP +D +D + L L+E+ PE D + P V
Sbjct: 2 DIENKIYTLREELQHHNYQYYVLDNPEISDYDFDMKLKELQELEEKHPEFNDPNSPTQRV 61
Query: 118 G 118
G
Sbjct: 62 G 62
>gi|229015686|ref|ZP_04172669.1| DNA ligase [Bacillus cereus AH1273]
gi|229021878|ref|ZP_04178448.1| DNA ligase [Bacillus cereus AH1272]
gi|228739424|gb|EEL89850.1| DNA ligase [Bacillus cereus AH1272]
gi|228745603|gb|EEL95622.1| DNA ligase [Bacillus cereus AH1273]
Length = 669
Score = 88.0 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK A +E L + Y+ LDNP +D YDR + L L+ + PE ED P
Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFMGEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SIRVG 65
>gi|332970926|gb|EGK09901.1| NAD-dependent DNA ligase LigA [Kingella kingae ATCC 23330]
Length = 785
Score = 88.0 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 32/65 (49%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+S + ++++L +I + YY LD P D YD++ L+ L+ FP + P
Sbjct: 1 MSNTQIQNQIKHLTEILNRYAHEYYTLDAPSVPDSEYDKLYRELEQLERDFPYFRLPESP 60
Query: 114 WNTVG 118
N VG
Sbjct: 61 TNRVG 65
>gi|157826142|ref|YP_001493862.1| NAD-dependent DNA ligase LigA [Rickettsia akari str. Hartford]
gi|166216231|sp|A8GPM9|DNLJ_RICAH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|157800100|gb|ABV75354.1| DNA ligase [Rickettsia akari str. Hartford]
Length = 689
Score = 87.6 bits (216), Expect = 4e-16, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 34/69 (49%)
Query: 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
+ +S+ EA +E L + YY DNPL +D YD++ L++QFP L
Sbjct: 3 NIDFISEAEAKKLLEELSCKIAAYNHAYYIEDNPLVSDAEYDQLVNINLKLEQQFPHLVL 62
Query: 110 EDHPWNTVG 118
E+ P VG
Sbjct: 63 ENSPSKEVG 71
>gi|322368190|ref|ZP_08042759.1| NAD-dependent DNA ligase LigA [Haladaptatus paucihalophilus DX253]
gi|320552206|gb|EFW93851.1| NAD-dependent DNA ligase LigA [Haladaptatus paucihalophilus DX253]
Length = 685
Score = 87.6 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
+ V + + A + E L + HH YY ++P D YD + RL L+E F +
Sbjct: 18 DFEPVAEMDEAGASEQAELLREAIRHHDYRYYVENDPRIGDRTYDALFTRLQELEEAF-D 76
Query: 107 LFDEDHPWNTVG 118
+ D P VG
Sbjct: 77 VQTPDSPTRRVG 88
>gi|116628243|ref|YP_820862.1| NAD-dependent DNA ligase LigA [Streptococcus thermophilus LMD-9]
gi|116101520|gb|ABJ66666.1| NAD-dependent DNA ligase [Streptococcus thermophilus LMD-9]
Length = 648
Score = 87.6 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ LV + K YY DNP +D YD++ L L+ + PEL D P + VG
Sbjct: 1 MKELVDKLNQYAKEYYTEDNPSVSDAEYDKLYRELVTLEAEHPELVQADSPTHRVG 56
>gi|312278868|gb|ADQ63525.1| DNA ligase [Streptococcus thermophilus ND03]
Length = 648
Score = 87.6 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ LV + K YY DNP +D YD++ L L+ + PEL D P + VG
Sbjct: 1 MKELVDKLNQYAKEYYTEDNPSVSDAEYDKLYRELVTLEAEHPELVQADSPTHRVG 56
>gi|182435814|ref|YP_001823533.1| NAD-dependent DNA ligase LigA [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|254778153|sp|B1VZW1|DNLJ2_STRGG RecName: Full=DNA ligase 2; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] 2
gi|178464330|dbj|BAG18850.1| putative DNA ligase [Streptomyces griseus subsp. griseus NBRC
13350]
Length = 743
Score = 87.6 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 28/62 (45%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
+ + L + H+ YY D P+ +D +DR L+AL+E+ P L D P
Sbjct: 14 PADVREKHALLAEQIEEHRFRYYVKDQPVVSDADFDRQLRSLEALEEEHPSLRTPDSPTQ 73
Query: 116 TV 117
V
Sbjct: 74 KV 75
>gi|326776439|ref|ZP_08235704.1| DNA ligase, NAD-dependent [Streptomyces cf. griseus XylebKG-1]
gi|326656772|gb|EGE41618.1| DNA ligase, NAD-dependent [Streptomyces cf. griseus XylebKG-1]
Length = 743
Score = 87.6 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 28/62 (45%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
+ + L + H+ YY D P+ +D +DR L+AL+E+ P L D P
Sbjct: 14 PADVREKHALLAEQIEEHRFRYYVKDQPVVSDADFDRQLRSLEALEEEHPSLRTPDSPTQ 73
Query: 116 TV 117
V
Sbjct: 74 KV 75
>gi|332671254|ref|YP_004454262.1| DNA ligase, NAD-dependent [Cellulomonas fimi ATCC 484]
gi|332340292|gb|AEE46875.1| DNA ligase, NAD-dependent [Cellulomonas fimi ATCC 484]
Length = 834
Score = 87.6 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 27/72 (37%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
A +A LV+ Q YY LD P +D YD L L+E++P
Sbjct: 18 PAGDAAQEVPAQARHRWSELVERIDADQFAYYVLDAPPSSDADYDARLRELAELEERYPG 77
Query: 107 LFDEDHPWNTVG 118
L P VG
Sbjct: 78 LVTPQSPTQRVG 89
>gi|320529157|ref|ZP_08030249.1| DNA ligase, NAD-dependent [Selenomonas artemidis F0399]
gi|320138787|gb|EFW30677.1| DNA ligase, NAD-dependent [Selenomonas artemidis F0399]
Length = 672
Score = 87.6 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 54 LSKGEA-MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDH 112
+S +A E+ L + + K YY + +D +D++ RL A++ ++PEL ++
Sbjct: 1 MSDIQAVKAELAELRRQIRRYSKQYYDDNASDISDYEFDQLMLRLKAIEAEYPELITKNS 60
Query: 113 PWNTVG 118
P VG
Sbjct: 61 PTQKVG 66
>gi|307609752|emb|CBW99264.1| DNA ligase [Legionella pneumophila 130b]
Length = 650
Score = 87.6 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 28/64 (43%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ +E L + + YY LD PL D YDR + L +EQ+P+ D P
Sbjct: 1 MNDQGIKESIETLKEQIRKYDYHYYVLDEPLVPDAEYDRCFKALQQYEEQYPQFLSPDSP 60
Query: 114 WNTV 117
V
Sbjct: 61 TQRV 64
>gi|295397184|ref|ZP_06807287.1| NAD-dependent DNA ligase LigA [Aerococcus viridans ATCC 11563]
gi|294974573|gb|EFG50297.1| NAD-dependent DNA ligase LigA [Aerococcus viridans ATCC 11563]
Length = 670
Score = 87.6 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ +E L ++ + YY LDNP +D YD++ L L+ ++P + P VG
Sbjct: 11 VARIEALTRLLNDYAYQYYALDNPTISDTEYDKLYRELQDLEAKYPTFIQAESPTQRVG 69
>gi|54293931|ref|YP_126346.1| DNA ligase [Legionella pneumophila str. Lens]
gi|81368949|sp|Q5WXV3|DNLJ_LEGPL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|53753763|emb|CAH15221.1| DNA ligase [Legionella pneumophila str. Lens]
Length = 673
Score = 87.6 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 28/64 (43%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ +E L + + YY LD PL D YDR + L +EQ+P+ D P
Sbjct: 1 MNDQGIKESIETLKEQIRKYDYHYYVLDEPLVPDAEYDRCFKALQQYEEQYPQFLSPDSP 60
Query: 114 WNTV 117
V
Sbjct: 61 TQRV 64
>gi|52841193|ref|YP_094992.1| DNA ligase [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
gi|52628304|gb|AAU27045.1| DNA ligase [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
Length = 683
Score = 87.6 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 52 TSLSKGEAMIE-VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
+SL + + E +E L + + YY LD PL D YDR + L +EQ+P+
Sbjct: 8 SSLMNDQGIKESIETLKEQIRKYDYHYYVLDEPLVPDAEYDRCFKALQQYEEQYPQFLSP 67
Query: 111 DHPWNTV 117
D P V
Sbjct: 68 DSPTQRV 74
>gi|257869253|ref|ZP_05648906.1| NAD-dependent DNA ligase [Enterococcus gallinarum EG2]
gi|257803417|gb|EEV32239.1| NAD-dependent DNA ligase [Enterococcus gallinarum EG2]
Length = 676
Score = 87.6 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 27/61 (44%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E E L + YY D P D +YDR+ + L L+ +P+L ED P V
Sbjct: 7 EVQQRAEELRTTLNQYAYEYYVKDQPSVEDYVYDRLYKELVQLETDYPQLVTEDSPTQRV 66
Query: 118 G 118
G
Sbjct: 67 G 67
>gi|166215832|sp|Q5ZWX6|DNLJ_LEGPH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
Length = 673
Score = 87.6 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 28/64 (43%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ +E L + + YY LD PL D YDR + L +EQ+P+ D P
Sbjct: 1 MNDQGIKESIETLKEQIRKYDYHYYVLDEPLVPDAEYDRCFKALQQYEEQYPQFLSPDSP 60
Query: 114 WNTV 117
V
Sbjct: 61 TQRV 64
>gi|22298400|ref|NP_681647.1| NAD-dependent DNA ligase LigA [Thermosynechococcus elongatus BP-1]
gi|81743454|sp|Q8DKK2|DNLJ_THEEB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|22294579|dbj|BAC08409.1| DNA ligase [Thermosynechococcus elongatus BP-1]
Length = 689
Score = 87.6 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 28/63 (44%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
K ++ L ++ YY LD P+ D +YD++ L L+ +PE D P
Sbjct: 4 KEPPAERIQQLRRLLQRASYAYYALDQPIMEDEVYDQLYRELQELEAAYPEYITPDSPTQ 63
Query: 116 TVG 118
+G
Sbjct: 64 RIG 66
>gi|300779557|ref|ZP_07089415.1| NAD-dependent DNA ligase LigA [Chryseobacterium gleum ATCC 35910]
gi|300505067|gb|EFK36207.1| NAD-dependent DNA ligase LigA [Chryseobacterium gleum ATCC 35910]
Length = 667
Score = 87.6 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 33/62 (53%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++E L K H + YY+LD P TD +D + + L L+ ++PE +DE+ P
Sbjct: 3 ENIQQKIEQLRKELHQHNENYYQLDTPTITDFEFDMLLQELQDLEARYPEFYDENSPTVR 62
Query: 117 VG 118
VG
Sbjct: 63 VG 64
>gi|329848744|ref|ZP_08263772.1| DNA ligase, NAD-dependent [Asticcacaulis biprosthecum C19]
gi|328843807|gb|EGF93376.1| DNA ligase, NAD-dependent [Asticcacaulis biprosthecum C19]
Length = 714
Score = 87.6 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 33/65 (50%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ +A L +H+ YYR + P TD YD + ++L L+ QFP+L + P
Sbjct: 1 MTLDDARALHSELAAQVQYHRGLYYREETPELTDADYDALEKQLRDLEAQFPDLKTSESP 60
Query: 114 WNTVG 118
TVG
Sbjct: 61 TQTVG 65
>gi|313159317|gb|EFR58681.1| DNA ligase (NAD+) [Alistipes sp. HGB5]
Length = 694
Score = 87.6 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 26/60 (43%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+E L + +H YY + P +D +D + L L+ PE+ D + P VG
Sbjct: 2 IRERIEELRRQLEYHNFRYYVENAPEISDFEFDAMMRELQDLERAHPEMADPNSPSVRVG 61
>gi|327438552|dbj|BAK14917.1| NAD-dependent DNA ligase [Solibacillus silvestris StLB046]
Length = 665
Score = 87.6 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 29/61 (47%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E + L K+ + YY LD P+ D +YD++ L AL+E PE D P V
Sbjct: 3 EIEQRIAELNKLLHEYGYAYYVLDKPVVEDSVYDQLLHELIALEEANPEFIYPDSPTQRV 62
Query: 118 G 118
G
Sbjct: 63 G 63
>gi|325913348|ref|ZP_08175716.1| DNA ligase (NAD+) [Lactobacillus iners UPII 60-B]
gi|325477451|gb|EGC80595.1| DNA ligase (NAD+) [Lactobacillus iners UPII 60-B]
Length = 672
Score = 87.6 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
++ LS +A +EV L K YY D P+ D +YD+V ++L L++++P L D
Sbjct: 1 MSELSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLLDP 60
Query: 111 DHPWNTVG 118
D VG
Sbjct: 61 DSITQRVG 68
>gi|296106543|ref|YP_003618243.1| DNA ligase (NAD ) [Legionella pneumophila 2300/99 Alcoy]
gi|295648444|gb|ADG24291.1| DNA ligase (NAD ) [Legionella pneumophila 2300/99 Alcoy]
Length = 673
Score = 87.6 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 28/64 (43%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ +E L + + YY LD PL D YDR + L +EQ+P+ D P
Sbjct: 1 MNDQGIKESIETLKEQIRKYDYHYYVLDEPLVPDAEYDRCFKALQQYEEQYPQFLSPDSP 60
Query: 114 WNTV 117
V
Sbjct: 61 TQRV 64
>gi|148360390|ref|YP_001251597.1| DNA ligase [Legionella pneumophila str. Corby]
gi|166215817|sp|A5IFV1|DNLJ_LEGPC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|148282163|gb|ABQ56251.1| DNA ligase [Legionella pneumophila str. Corby]
Length = 673
Score = 87.6 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 28/64 (43%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ +E L + + YY LD PL D YDR + L +EQ+P+ D P
Sbjct: 1 MNDQGIKESIETLKEQIRKYDYHYYVLDEPLVPDAEYDRCFKALQQYEEQYPQFLSPDSP 60
Query: 114 WNTV 117
V
Sbjct: 61 TQRV 64
>gi|240142614|ref|YP_002967127.1| DNA ligase, NAD(+)-dependent [Methylobacterium extorquens AM1]
gi|240012561|gb|ACS43786.1| DNA ligase, NAD(+)-dependent [Methylobacterium extorquens AM1]
Length = 712
Score = 87.2 bits (215), Expect = 6e-16, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 30/72 (41%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
+A V LS +A IE L H + Y+ D P+ TD YD + R ++ P
Sbjct: 8 RAVPVAELSNEDARIEHAALASEIAEHDERYHGQDAPIVTDAEYDALRRRAAEIEAAHPA 67
Query: 107 LFDEDHPWNTVG 118
L E VG
Sbjct: 68 LAAESEVAKKVG 79
>gi|54296979|ref|YP_123348.1| DNA ligase [Legionella pneumophila str. Paris]
gi|81370862|sp|Q5X6E6|DNLJ_LEGPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|53750764|emb|CAH12171.1| DNA ligase [Legionella pneumophila str. Paris]
Length = 673
Score = 87.2 bits (215), Expect = 6e-16, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 28/64 (43%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ +E L + + YY LD PL D YDR + L +EQ+P+ D P
Sbjct: 1 MNDQGIKESIETLKEQIRKYDYHYYVLDEPLVPDAEYDRCFKALQQYEEQYPQFLSPDSP 60
Query: 114 WNTV 117
V
Sbjct: 61 TQRV 64
>gi|312865342|ref|ZP_07725570.1| DNA ligase (NAD+) [Streptococcus downei F0415]
gi|311099453|gb|EFQ57669.1| DNA ligase (NAD+) [Streptococcus downei F0415]
Length = 673
Score = 87.2 bits (215), Expect = 6e-16, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ LV + K YY DNP +D YD++ L L++ PEL D P + VG
Sbjct: 23 ENRMKELVDQLNRYAKEYYTQDNPSVSDAQYDKLYRELVDLEKAHPELVQADSPTHRVG 81
>gi|163751929|ref|ZP_02159142.1| DNA ligase, NAD-dependent [Shewanella benthica KT99]
gi|161328212|gb|EDP99377.1| DNA ligase, NAD-dependent [Shewanella benthica KT99]
Length = 690
Score = 87.2 bits (215), Expect = 6e-16, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 16/73 (21%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL-------------- 107
E+E+L+ H Y+ LD+P+ TD YDR+ +L L+ +FP L
Sbjct: 11 EIEHLISEINEHDHRYHVLDDPIITDSEYDRLKIKLKKLENRFPALNLILDLNAVSEGVH 70
Query: 108 --FDEDHPWNTVG 118
D P VG
Sbjct: 71 TSIRFDSPSRRVG 83
>gi|303231514|ref|ZP_07318244.1| DNA ligase (NAD+) [Veillonella atypica ACS-049-V-Sch6]
gi|302513857|gb|EFL55869.1| DNA ligase (NAD+) [Veillonella atypica ACS-049-V-Sch6]
Length = 666
Score = 87.2 bits (215), Expect = 6e-16, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 24/59 (40%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+E L K H Q YY DNP +D YD+ L L+ PE P VG
Sbjct: 4 KDRIEQLQKELTHAQYLYYVKDNPTMSDFEYDQKYRELVDLETAHPEYIVPSSPTQRVG 62
>gi|116493340|ref|YP_805075.1| NAD-dependent DNA ligase [Pediococcus pentosaceus ATCC 25745]
gi|122265196|sp|Q03DT9|DNLJ_PEDPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|116103490|gb|ABJ68633.1| NAD-dependent DNA ligase [Pediococcus pentosaceus ATCC 25745]
Length = 675
Score = 87.2 bits (215), Expect = 6e-16, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 32/74 (43%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
+ KK+ + EA + L +I K YY D P D YD L AL+E F
Sbjct: 1 MSLPKKLEEMQVEEASKLAQNLREILDRWSKLYYTKDAPEVEDYEYDEKYADLVALEEAF 60
Query: 105 PELFDEDHPWNTVG 118
PE+ +D VG
Sbjct: 61 PEIITQDSITQRVG 74
>gi|157827661|ref|YP_001496725.1| NAD-dependent DNA ligase LigA [Rickettsia bellii OSU 85-389]
gi|166216232|sp|A8GXT8|DNLJ_RICB8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|157802965|gb|ABV79688.1| NAD-dependent DNA ligase LigA [Rickettsia bellii OSU 85-389]
Length = 689
Score = 87.2 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 32/69 (46%)
Query: 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
+ +++ EA + L + YY D PL +D YD++ L+++FP L
Sbjct: 3 NIEKINEEEAKKLLIELADKIAQYNHAYYIEDKPLVSDAEYDQLFNTNLKLEQKFPHLIL 62
Query: 110 EDHPWNTVG 118
E+ P +G
Sbjct: 63 ENSPSKKIG 71
>gi|113475951|ref|YP_722012.1| NAD-dependent DNA ligase LigA [Trichodesmium erythraeum IMS101]
gi|123160812|sp|Q112N5|DNLJ_TRIEI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|110166999|gb|ABG51539.1| DNA ligase, NAD-dependent [Trichodesmium erythraeum IMS101]
Length = 774
Score = 87.2 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 27/61 (44%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E + L + YY LD P+ D +YD + L L+ Q+P+L D P V
Sbjct: 7 EVEQYTQNLREKLQEAGYSYYVLDQPIMEDAVYDHLLRELQELESQYPQLIVSDSPTQRV 66
Query: 118 G 118
G
Sbjct: 67 G 67
>gi|255021565|ref|ZP_05293608.1| DNA ligase [Acidithiobacillus caldus ATCC 51756]
gi|254968953|gb|EET26472.1| DNA ligase [Acidithiobacillus caldus ATCC 51756]
Length = 659
Score = 87.2 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 25/50 (50%)
Query: 69 IALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ + YYR D P+ +D YD + L AL++ PEL D P VG
Sbjct: 2 LLEAANRAYYRDDAPVMSDAEYDALLRELRALEDAHPELRVADSPTQRVG 51
>gi|213421996|ref|ZP_03355062.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Typhi str. E01-6750]
Length = 271
Score = 87.2 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
Y+ +D P D YDR+ L L+ Q P+L D P VG
Sbjct: 2 YHVMDAPEILDAEYDRLMRELRELEAQRPDLITPDSPTQRVG 43
>gi|152965283|ref|YP_001361067.1| DNA ligase, NAD-dependent [Kineococcus radiotolerans SRS30216]
gi|190359261|sp|A6W7L4|DNLJ_KINRD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|151359800|gb|ABS02803.1| DNA ligase, NAD-dependent [Kineococcus radiotolerans SRS30216]
Length = 696
Score = 87.2 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 30/63 (47%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
EA E LV + YY ++ +DG YD + L AL+EQ P+L D P
Sbjct: 10 PSEARHRWEDLVAQIEAARFAYYVRNSSPLSDGQYDALERELRALEEQHPQLRTPDSPTQ 69
Query: 116 TVG 118
TVG
Sbjct: 70 TVG 72
>gi|91205008|ref|YP_537363.1| NAD-dependent DNA ligase LigA [Rickettsia bellii RML369-C]
gi|122990942|sp|Q1RK40|DNLJ_RICBR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|91068552|gb|ABE04274.1| DNA ligase, NAD-dependent [Rickettsia bellii RML369-C]
Length = 689
Score = 87.2 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 32/69 (46%)
Query: 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
+ +++ EA + L + YY D PL +D YD++ L+++FP L
Sbjct: 3 NIEKINEEEAKKLLIELADKIAQYNHAYYIEDKPLVSDAEYDQLFNTNLKLEQKFPHLIL 62
Query: 110 EDHPWNTVG 118
E+ P +G
Sbjct: 63 ENSPSKKIG 71
>gi|296116447|ref|ZP_06835061.1| putative DNA ligase [Gluconacetobacter hansenii ATCC 23769]
gi|295977040|gb|EFG83804.1| putative DNA ligase [Gluconacetobacter hansenii ATCC 23769]
Length = 709
Score = 87.2 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 31/67 (46%)
Query: 52 TSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
+S +A E+ L + + Y++ D P+ TD +YD + R L++ P +D
Sbjct: 22 PDMSASQAASELALLADVIAQLDRAYHQDDAPIVTDAVYDALRRRNSELEQAHPRERRDD 81
Query: 112 HPWNTVG 118
P VG
Sbjct: 82 SPDTRVG 88
>gi|312194886|ref|YP_004014947.1| DNA ligase, NAD-dependent [Frankia sp. EuI1c]
gi|311226222|gb|ADP79077.1| DNA ligase, NAD-dependent [Frankia sp. EuI1c]
Length = 755
Score = 87.2 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 22/48 (45%)
Query: 70 ALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
H YY L P +D YD + L AL+E++P L D P V
Sbjct: 44 LDEHAYRYYVLAAPTVSDAEYDVLYRELVALEERYPALRTPDSPTQKV 91
>gi|325267489|ref|ZP_08134142.1| NAD-dependent DNA ligase LigA [Kingella denitrificans ATCC 33394]
gi|324981014|gb|EGC16673.1| NAD-dependent DNA ligase LigA [Kingella denitrificans ATCC 33394]
Length = 804
Score = 87.2 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 27/57 (47%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV+ + YY LD P D YDR+ L+ L+ ++P+ + P VG
Sbjct: 31 RIRTLVQTLNRYAHEYYTLDAPSVPDAEYDRLYRELETLEAEYPQFRLPESPTQRVG 87
>gi|213962174|ref|ZP_03390438.1| DNA ligase, NAD-dependent [Capnocytophaga sputigena Capno]
gi|213955180|gb|EEB66498.1| DNA ligase, NAD-dependent [Capnocytophaga sputigena Capno]
Length = 663
Score = 87.2 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L + H YY LDNP +D +D+ + L AL++ PE +DE+ P VG
Sbjct: 2 KEKIQQLREELNQHNYNYYILDNPTISDYEFDQKLKELQALEQAHPEFYDENSPTVRVG 60
>gi|295426520|ref|ZP_06819170.1| NAD-dependent DNA ligase LigA [Lactobacillus amylolyticus DSM
11664]
gi|295063888|gb|EFG54846.1| NAD-dependent DNA ligase LigA [Lactobacillus amylolyticus DSM
11664]
Length = 669
Score = 87.2 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 31/68 (45%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
+ ++ +A EV L K + YY D P D +YD+ RL L++ FPEL
Sbjct: 1 MADITLDQAKTEVAALRKQLDEWAEAYYSKDAPEVEDNVYDQKYNRLLELEKDFPELVTP 60
Query: 111 DHPWNTVG 118
D VG
Sbjct: 61 DSITQRVG 68
>gi|300691610|ref|YP_003752605.1| DNA ligase [Ralstonia solanacearum PSI07]
gi|299078670|emb|CBJ51328.1| DNA ligase [Ralstonia solanacearum PSI07]
Length = 813
Score = 86.8 bits (214), Expect = 8e-16, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 23/48 (47%)
Query: 71 LHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ YY LD P D YDR+ L+AL+ PEL D P VG
Sbjct: 25 NRYAHEYYVLDQPSVPDAEYDRLYRELEALEADHPELKTPDSPTLRVG 72
>gi|229815888|ref|ZP_04446212.1| hypothetical protein COLINT_02944 [Collinsella intestinalis DSM
13280]
gi|229808583|gb|EEP44361.1| hypothetical protein COLINT_02944 [Collinsella intestinalis DSM
13280]
Length = 752
Score = 86.8 bits (214), Expect = 8e-16, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 24/54 (44%)
Query: 65 YLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L + +H YY LD P TD +D++ L ++ PEL D VG
Sbjct: 49 ELRHLLDYHAYRYYALDAPEITDAAFDKLLVELQQIEAAHPELVTPDSYTQRVG 102
>gi|315606212|ref|ZP_07881239.1| DNA ligase [Actinomyces sp. oral taxon 180 str. F0310]
gi|315312100|gb|EFU60190.1| DNA ligase [Actinomyces sp. oral taxon 180 str. F0310]
Length = 777
Score = 86.8 bits (214), Expect = 8e-16, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 34/69 (49%)
Query: 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
++ + + LV+ + YY D+P +D YDR+ L+ ++E++P+L
Sbjct: 3 PMSDPTFETTRKRYDELVRSIEEARAAYYDRDSPTISDADYDRMYRELEEIEERYPQLRG 62
Query: 110 EDHPWNTVG 118
D P +VG
Sbjct: 63 ADSPTMSVG 71
>gi|313665597|ref|YP_004047468.1| DNA ligase (NAD(+)) [Mycoplasma leachii PG50]
gi|312949194|gb|ADR23790.1| DNA ligase (NAD(+)) [Mycoplasma leachii PG50]
Length = 668
Score = 86.8 bits (214), Expect = 8e-16, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 30/65 (46%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK + ++ + L + K YY DNP D YD + L +L+ +PE D P
Sbjct: 1 MSKEQVLLRINQLKEQLNLWSKQYYVDDNPSVDDTEYDLALKELISLENLYPEFITSDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SQKVG 65
>gi|332880018|ref|ZP_08447702.1| DNA ligase [Capnocytophaga sp. oral taxon 329 str. F0087]
gi|332682014|gb|EGJ54927.1| DNA ligase [Capnocytophaga sp. oral taxon 329 str. F0087]
Length = 663
Score = 86.8 bits (214), Expect = 8e-16, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L + H YY LD P +D +D+ + L AL++ PE +DE+ P VG
Sbjct: 2 KEKIQQLREELNQHNYNYYVLDTPTISDFEFDQKLKELQALEQAHPEYYDENSPTVRVG 60
>gi|81429164|ref|YP_396165.1| NAD-dependent DNA ligase [Lactobacillus sakei subsp. sakei 23K]
gi|123755813|sp|Q38VC5|DNLJ_LACSS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|78610807|emb|CAI55858.1| NAD-dependent DNA ligase [Lactobacillus sakei subsp. sakei 23K]
Length = 677
Score = 86.8 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 32/71 (45%)
Query: 48 AKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
AK V ++ EA + L + + YY D PL D +YD + L+ L+ FP +
Sbjct: 4 AKLVEDYTQSEAASLAQQLRDQLADYSQAYYTQDAPLVEDHVYDELYRDLEQLEAAFPVI 63
Query: 108 FDEDHPWNTVG 118
D P VG
Sbjct: 64 VTNDSPTQKVG 74
>gi|319939188|ref|ZP_08013551.1| DNA ligase [Streptococcus anginosus 1_2_62CV]
gi|319811584|gb|EFW07860.1| DNA ligase [Streptococcus anginosus 1_2_62CV]
Length = 652
Score = 86.8 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LVK+ + YY DNP +D YD++ L L++Q+PE D P + VG
Sbjct: 2 KDRMLELVKLLNQYAHEYYTTDNPSVSDSEYDKLYHELLDLEKQYPEFVQPDSPTHRVG 60
>gi|313896259|ref|ZP_07829812.1| DNA ligase (NAD+) [Selenomonas sp. oral taxon 137 str. F0430]
gi|312975058|gb|EFR40520.1| DNA ligase (NAD+) [Selenomonas sp. oral taxon 137 str. F0430]
Length = 672
Score = 86.8 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 30/60 (50%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E+ L + + K YY + +D +D++ RL A++ ++PEL ++ P VG
Sbjct: 7 VKAELAELRRQIRRYSKQYYDDNASDISDYEFDQLMLRLKAIEAEYPELITKNSPTQKVG 66
>gi|83319601|ref|YP_424672.1| DNA ligase, NAD-dependent [Mycoplasma capricolum subsp. capricolum
ATCC 27343]
gi|123740036|sp|Q2SRE1|DNLJ_MYCCT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|83283487|gb|ABC01419.1| DNA ligase, NAD-dependent [Mycoplasma capricolum subsp. capricolum
ATCC 27343]
Length = 668
Score = 86.8 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 30/65 (46%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK + ++ + L + K YY DNP D YD + L +L+ +PE D P
Sbjct: 1 MSKEQILLRINQLKEQLNLWSKQYYVDDNPSVDDTEYDLALKELISLENLYPEFITSDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SQKVG 65
>gi|312888786|ref|ZP_07748349.1| DNA ligase, NAD-dependent [Mucilaginibacter paludis DSM 18603]
gi|311298661|gb|EFQ75767.1| DNA ligase, NAD-dependent [Mucilaginibacter paludis DSM 18603]
Length = 675
Score = 86.8 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 32/65 (49%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+S EA ++ L H YY L P +D +D+ E L AL++QFPE + D P
Sbjct: 1 MSPTEAKNKIHTLSAELKQHNYNYYVLAMPTISDFDFDKKLEELAALEKQFPEFAEPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQQVG 65
>gi|300783591|ref|YP_003763882.1| DNA ligase (NAD+) [Amycolatopsis mediterranei U32]
gi|299793105|gb|ADJ43480.1| DNA ligase (NAD+) [Amycolatopsis mediterranei U32]
Length = 726
Score = 86.8 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 28/63 (44%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
+ L + HQ YY LD+P+ +DG +D + L L++ P L + P
Sbjct: 27 PADVRERHSALAEELRDHQFRYYVLDSPIISDGQFDELLGELQRLEDAHPALVTPESPTQ 86
Query: 116 TVG 118
VG
Sbjct: 87 RVG 89
>gi|255009394|ref|ZP_05281520.1| putative DNA ligase [Bacteroides fragilis 3_1_12]
gi|313147153|ref|ZP_07809346.1| DNA ligase [Bacteroides fragilis 3_1_12]
gi|313135920|gb|EFR53280.1| DNA ligase [Bacteroides fragilis 3_1_12]
Length = 665
Score = 86.8 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 28/60 (46%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L H YY L+ P +D +D + L L+++ PE DE+ P VG
Sbjct: 3 VKEKIDQLRIQLHQHNYNYYVLNAPEISDKEFDDLMRELQTLEQEHPEYKDENSPTMRVG 62
>gi|124026855|ref|YP_001015970.1| NAD-dependent DNA ligase [Prochlorococcus marinus str. NATL1A]
gi|166216227|sp|A2C5E6|DNLJ_PROM1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|123961923|gb|ABM76706.1| NAD-dependent DNA ligase [Prochlorococcus marinus str. NATL1A]
Length = 690
Score = 86.8 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 26/58 (44%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L + YY LD+P D +YD++ L ++ P L +D P +G
Sbjct: 10 ERIKELRALLNKANYSYYVLDSPEIDDAVYDQLYRELIEIENIHPSLITDDSPSQRLG 67
>gi|303228999|ref|ZP_07315809.1| DNA ligase (NAD+) [Veillonella atypica ACS-134-V-Col7a]
gi|302516413|gb|EFL58345.1| DNA ligase (NAD+) [Veillonella atypica ACS-134-V-Col7a]
Length = 666
Score = 86.8 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 24/59 (40%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+E L K H Q YY DNP +D YD+ L L+ PE P VG
Sbjct: 4 KDRIEQLQKELTHAQYLYYVKDNPTMSDFEYDQKYRELVDLETSHPEYIVPSSPTQRVG 62
>gi|210621776|ref|ZP_03292805.1| hypothetical protein CLOHIR_00750 [Clostridium hiranonis DSM 13275]
gi|210154540|gb|EEA85546.1| hypothetical protein CLOHIR_00750 [Clostridium hiranonis DSM 13275]
Length = 678
Score = 86.8 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 32/65 (49%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K + ++++ L+ +H YY D P +D YD + + L L+ + PE D P
Sbjct: 1 MGKEDIKLQIDNLIDKINYHSDKYYNQDTPEISDFEYDMLMKELIKLEAENPEFKRVDSP 60
Query: 114 WNTVG 118
N VG
Sbjct: 61 SNRVG 65
>gi|194335632|ref|YP_002017426.1| DNA ligase, NAD-dependent [Pelodictyon phaeoclathratiforme BU-1]
gi|254781384|sp|B4SCX5|DNLJ_PELPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|194308109|gb|ACF42809.1| DNA ligase, NAD-dependent [Pelodictyon phaeoclathratiforme BU-1]
Length = 674
Score = 86.8 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
A + L + H YY P +D +D++ ++L L+ QFP+L D P VG
Sbjct: 7 AAEAIAQLRREIERHTHLYYVEAKPELSDFEFDQLLDQLITLERQFPQLLTPDSPSQRVG 66
>gi|325570045|ref|ZP_08145970.1| NAD-dependent DNA ligase LigA [Enterococcus casseliflavus ATCC
12755]
gi|325156873|gb|EGC69044.1| NAD-dependent DNA ligase LigA [Enterococcus casseliflavus ATCC
12755]
Length = 687
Score = 86.4 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 3/80 (3%)
Query: 39 RALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLD 98
+ L++ D V S E E L + YY D P D LYD++ L
Sbjct: 2 KKLKNKEDIRMDVPS---KEIQSRAEELRTQLNQYAYEYYVKDQPSVEDYLYDQLYAELV 58
Query: 99 ALQEQFPELFDEDHPWNTVG 118
++ +P+L ED P VG
Sbjct: 59 EIETNYPQLVTEDSPTQRVG 78
>gi|320546461|ref|ZP_08040776.1| NAD-dependent DNA ligase LigA [Streptococcus equinus ATCC 9812]
gi|320448846|gb|EFW89574.1| NAD-dependent DNA ligase LigA [Streptococcus equinus ATCC 9812]
Length = 652
Score = 86.4 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ LV ++K YY D P +D YD++ L L++ PEL + P VG
Sbjct: 2 KKRIQELVDELNQYRKEYYTEDQPTVSDSEYDKLYRELVELEKAHPELILPNSPTQEVG 60
>gi|288904984|ref|YP_003430206.1| DNA ligase (NAD-dependent) [Streptococcus gallolyticus UCN34]
gi|288731710|emb|CBI13271.1| DNA ligase (NAD-dependent) [Streptococcus gallolyticus UCN34]
Length = 652
Score = 86.4 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ LV ++K YY D P +D YD++ L L++ PEL + P VG
Sbjct: 2 KKRIQELVDELNQYRKEYYTEDQPTVSDSEYDKLYRELVELEKAHPELILPNSPTQEVG 60
>gi|292670878|ref|ZP_06604304.1| DNA ligase [Selenomonas noxia ATCC 43541]
gi|292647499|gb|EFF65471.1| DNA ligase [Selenomonas noxia ATCC 43541]
Length = 673
Score = 86.4 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 31/62 (50%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
E E+ L K + K YY + +D +D + +RL A++ ++PEL ++ P
Sbjct: 5 KEIKNELTELRKKIRKYSKQYYDENASDISDYDFDLLMQRLKAIEAEYPELITKNSPTQK 64
Query: 117 VG 118
VG
Sbjct: 65 VG 66
>gi|152997408|ref|YP_001342243.1| DNA ligase, NAD-dependent [Marinomonas sp. MWYL1]
gi|190359264|sp|A6W0S9|DNLJ_MARMS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|150838332|gb|ABR72308.1| DNA ligase, NAD-dependent [Marinomonas sp. MWYL1]
Length = 672
Score = 86.4 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 28/57 (49%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L++ + Y+ D P+ D +YDR +L +++ + PE D P VG
Sbjct: 5 QMLDLIQQLNDYSYAYHVKDEPIVPDAVYDRDYRQLQSIEAEHPEWIQADSPTQRVG 61
>gi|325977951|ref|YP_004287667.1| NAD-dependent DNA ligase [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|325177879|emb|CBZ47923.1| NAD-dependent DNA ligase [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
Length = 652
Score = 86.4 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ LV ++K YY D P +D YD++ L L++ PEL + P VG
Sbjct: 2 KKRIQELVDELNQYRKEYYTEDQPTVSDSEYDKLYRELVELEKAHPELILPNSPTQEVG 60
>gi|306833158|ref|ZP_07466288.1| NAD-dependent DNA ligase LigA [Streptococcus bovis ATCC 700338]
gi|304424732|gb|EFM27868.1| NAD-dependent DNA ligase LigA [Streptococcus bovis ATCC 700338]
Length = 652
Score = 86.4 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ LV ++K YY D P +D YD++ L L++ PEL + P VG
Sbjct: 2 KKRIQELVDELNQYRKEYYTEDQPTVSDSEYDKLYRELVELEKAHPELILPNSPTQEVG 60
>gi|284992468|ref|YP_003411022.1| DNA ligase, NAD-dependent [Geodermatophilus obscurus DSM 43160]
gi|284065713|gb|ADB76651.1| DNA ligase, NAD-dependent [Geodermatophilus obscurus DSM 43160]
Length = 716
Score = 86.4 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Query: 52 TSLSK--GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
L++ +A L + + YY D PL +DG YD + L +++ P L
Sbjct: 19 EDLTEVPDDARTRHRDLSEELDRYAFAYYVQDAPLVSDGQYDELMGELKSIEAAHPALVT 78
Query: 110 EDHPWNTV 117
D P V
Sbjct: 79 PDSPSQKV 86
>gi|269798060|ref|YP_003311960.1| DNA ligase, NAD-dependent [Veillonella parvula DSM 2008]
gi|269094689|gb|ACZ24680.1| DNA ligase, NAD-dependent [Veillonella parvula DSM 2008]
Length = 667
Score = 86.4 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 23/59 (38%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L + H Q YY D P +D YD+ L L+ PE P VG
Sbjct: 4 KDRIKELQQELTHAQYLYYVKDAPTMSDFEYDKKYRELVDLETAHPEYIVPSSPTQRVG 62
>gi|308450080|ref|XP_003088175.1| hypothetical protein CRE_02776 [Caenorhabditis remanei]
gi|308249279|gb|EFO93231.1| hypothetical protein CRE_02776 [Caenorhabditis remanei]
Length = 1202
Score = 86.4 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 46 DKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFP 105
D + V A +E E L ++ YY L +D YD + RL+AL+ FP
Sbjct: 169 DSSIPVE---FEAARVEAEQLTAEIERYRAAYYSEATSLVSDAQYDELFHRLEALERAFP 225
Query: 106 ELFDEDHPWNTVG 118
EL +D P VG
Sbjct: 226 ELAGQDSPTQEVG 238
>gi|306831054|ref|ZP_07464215.1| NAD-dependent DNA ligase LigA [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|304426620|gb|EFM29731.1| NAD-dependent DNA ligase LigA [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
Length = 652
Score = 86.4 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ LV ++K YY D P +D YD++ L L++ PEL + P VG
Sbjct: 2 KKRIQELVDELNQYRKEYYTEDQPTVSDSEYDKLYRELVELEKAHPELILPNSPTQEVG 60
>gi|257865964|ref|ZP_05645617.1| DNA ligase [Enterococcus casseliflavus EC30]
gi|257872297|ref|ZP_05651950.1| DNA ligase [Enterococcus casseliflavus EC10]
gi|257799898|gb|EEV28950.1| DNA ligase [Enterococcus casseliflavus EC30]
gi|257806461|gb|EEV35283.1| DNA ligase [Enterococcus casseliflavus EC10]
Length = 676
Score = 86.4 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 26/62 (41%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
E E L + YY D P D LYD++ L ++ +P+L ED P
Sbjct: 6 KEIQSRAEELRTQLNQYAYEYYVKDQPSVEDYLYDQLYAELVEIETNYPQLVTEDSPTQR 65
Query: 117 VG 118
VG
Sbjct: 66 VG 67
>gi|207723346|ref|YP_002253745.1| dna ligase (polydeoxyribonucleotide synthase [nad+]) (partial
sequence n terminus) protein [Ralstonia solanacearum
MolK2]
gi|206588545|emb|CAQ35508.1| probable dna ligase (polydeoxyribonucleotide synthase [nad+])
(partial sequence n terminus) protein [Ralstonia
solanacearum MolK2]
Length = 568
Score = 86.4 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 24/48 (50%)
Query: 71 LHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ YY LD P D YDR+ L+AL+ + PEL D P VG
Sbjct: 25 NRYAHEYYVLDQPSVPDAEYDRLYRALEALEAEHPELRTPDSPTLRVG 72
>gi|257875591|ref|ZP_05655244.1| DNA ligase [Enterococcus casseliflavus EC20]
gi|257809757|gb|EEV38577.1| DNA ligase [Enterococcus casseliflavus EC20]
Length = 676
Score = 86.4 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 26/62 (41%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
E E L + YY D P D LYD++ L ++ +P+L ED P
Sbjct: 6 KEIQSRAEELRTQLNQYAYEYYVKDQPSVEDYLYDQLYAELVEIETNYPQLVTEDSPTQR 65
Query: 117 VG 118
VG
Sbjct: 66 VG 67
>gi|222151884|ref|YP_002561044.1| DNA ligase [Macrococcus caseolyticus JCSC5402]
gi|254781362|sp|B9E830|DNLJ_MACCJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|222121013|dbj|BAH18348.1| DNA ligase [Macrococcus caseolyticus JCSC5402]
Length = 663
Score = 86.4 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 27/60 (45%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
V L ++ + Y+ DNP D YD++ L ++ + PEL +D P VG
Sbjct: 3 IEQRVTELHQLLHQYNYEYHVQDNPSVPDSEYDKLLHELIDIEREHPELKTDDSPTVRVG 62
>gi|153956079|ref|YP_001396844.1| LigA1 [Clostridium kluyveri DSM 555]
gi|219856414|ref|YP_002473536.1| hypothetical protein CKR_3071 [Clostridium kluyveri NBRC 12016]
gi|190359246|sp|A5N2X7|DNLJ_CLOK5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254781297|sp|B9DWM9|DNLJ_CLOK1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|146348937|gb|EDK35473.1| LigA1 [Clostridium kluyveri DSM 555]
gi|219570138|dbj|BAH08122.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 663
Score = 86.4 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 28/61 (45%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+ ++ L KI +H YY D+P TD YD++ L L+ PE + P V
Sbjct: 2 DIKKRIDELRKIIEYHNDKYYNQDDPEITDYEYDKLYVELRNLENSHPEYKIQSSPTQKV 61
Query: 118 G 118
G
Sbjct: 62 G 62
>gi|169335238|ref|ZP_02862431.1| hypothetical protein ANASTE_01646 [Anaerofustis stercorihominis DSM
17244]
gi|169257976|gb|EDS71942.1| hypothetical protein ANASTE_01646 [Anaerofustis stercorihominis DSM
17244]
Length = 659
Score = 86.4 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 33/62 (53%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ E+E L + L H + YY DNP +D YD + +L L+E++P+ E P +
Sbjct: 2 EDIKKEIEKLTEELLEHNRKYYEEDNPSISDYDYDMLIRKLTKLEEEYPQYKKEYSPTDR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|139438245|ref|ZP_01771798.1| Hypothetical protein COLAER_00787 [Collinsella aerofaciens ATCC
25986]
gi|133776442|gb|EBA40262.1| Hypothetical protein COLAER_00787 [Collinsella aerofaciens ATCC
25986]
Length = 742
Score = 86.4 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 65 YLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L +H YY LD P TD +D++ L ++ +P+L D VG
Sbjct: 39 ELRHELDYHAYRYYMLDAPEITDAAFDKMLVELQEIEAAYPDLVTPDSYTQRVG 92
>gi|282850287|ref|ZP_06259666.1| DNA ligase (NAD(+)) [Veillonella parvula ATCC 17745]
gi|282579780|gb|EFB85184.1| DNA ligase (NAD(+)) [Veillonella parvula ATCC 17745]
Length = 667
Score = 86.4 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 23/59 (38%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L + H Q YY D P +D YD+ L L+ PE P VG
Sbjct: 4 KDRIKELQQELTHAQYLYYVKDAPTMSDFEYDKKYRELVDLETAHPEYIVPSSPTQRVG 62
>gi|285018504|ref|YP_003376215.1| NAD-dependent_DNA_ligase [Xanthomonas albilineans GPE PC73]
gi|283473722|emb|CBA16225.1| putative nad-dependent_dna_ligase protein [Xanthomonas albilineans]
Length = 838
Score = 86.4 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
+ + + ++E L YY L +P D YD + L+AL+ P L E
Sbjct: 2 IAKFTPQQRVVE---LRSQLEDANHRYYVLADPAIPDAEYDALMRELEALESAHPALARE 58
Query: 111 DHPWNTVG 118
D P +VG
Sbjct: 59 DSPTRSVG 66
>gi|312984361|ref|ZP_07791702.1| DNA ligase, NAD-dependent [Lactobacillus crispatus CTV-05]
gi|310894255|gb|EFQ43336.1| DNA ligase, NAD-dependent [Lactobacillus crispatus CTV-05]
Length = 666
Score = 86.1 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 30/65 (46%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
L+ EA E L K + YY D P D +YD+ RL L+++FPE+ D
Sbjct: 2 LTLDEAKKEAASLRKQLNEWAEAYYSKDAPEVEDNVYDQSYNRLLELEKEFPEIVTPDSI 61
Query: 114 WNTVG 118
VG
Sbjct: 62 TQRVG 66
>gi|262047040|ref|ZP_06019999.1| DNA ligase, NAD-dependent [Lactobacillus crispatus MV-3A-US]
gi|293381897|ref|ZP_06627865.1| DNA ligase, NAD-dependent [Lactobacillus crispatus 214-1]
gi|260572617|gb|EEX29178.1| DNA ligase, NAD-dependent [Lactobacillus crispatus MV-3A-US]
gi|290921544|gb|EFD98578.1| DNA ligase, NAD-dependent [Lactobacillus crispatus 214-1]
Length = 668
Score = 86.1 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 31/68 (45%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
+ ++ EA E L K + YY D P D +YD+ RL L+++FPE+
Sbjct: 1 MAEITLDEAKKEAASLRKQLNEWAEAYYSKDAPEVEDNVYDQSYNRLLELEKEFPEIVTP 60
Query: 111 DHPWNTVG 118
D VG
Sbjct: 61 DSITQRVG 68
>gi|229055132|ref|ZP_04195560.1| DNA ligase [Bacillus cereus AH603]
gi|228721208|gb|EEL72737.1| DNA ligase [Bacillus cereus AH603]
Length = 669
Score = 86.1 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 30/65 (46%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK +E L + Y+ LDNP +D YDR + L L+ + PE ED P
Sbjct: 1 MSKEITKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRDMQELIKLEAENPEFMSEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SIRVG 65
>gi|294791934|ref|ZP_06757082.1| DNA ligase, NAD-dependent [Veillonella sp. 6_1_27]
gi|294457164|gb|EFG25526.1| DNA ligase, NAD-dependent [Veillonella sp. 6_1_27]
Length = 667
Score = 86.1 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 23/59 (38%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L + H Q YY D P +D YD+ L L+ PE P VG
Sbjct: 4 KDRIKELQQELTHAQYLYYVKDAPTMSDFEYDKKYRELVDLETAHPEYIVPSSPTQRVG 62
>gi|83748812|ref|ZP_00945825.1| NAD-dependent DNA ligase [Ralstonia solanacearum UW551]
gi|207743250|ref|YP_002259642.1| dna ligase (polydeoxyribonucleotide synthase [nad+]) protein
[Ralstonia solanacearum IPO1609]
gi|83724504|gb|EAP71669.1| NAD-dependent DNA ligase [Ralstonia solanacearum UW551]
gi|206594647|emb|CAQ61574.1| dna ligase (polydeoxyribonucleotide synthase [nad+]) protein
[Ralstonia solanacearum IPO1609]
Length = 813
Score = 86.1 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 24/48 (50%)
Query: 71 LHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ YY LD P D YDR+ L+AL+ + PEL D P VG
Sbjct: 25 NRYAHEYYVLDQPSVPDAEYDRLYRALEALEAEHPELRTPDSPTLRVG 72
>gi|260063119|ref|YP_003196199.1| DNA ligase [Robiginitalea biformata HTCC2501]
gi|88784688|gb|EAR15858.1| DNA ligase [Robiginitalea biformata HTCC2501]
Length = 673
Score = 86.1 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 32/67 (47%)
Query: 52 TSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
++K + +++ L H YY LD P+ +D +D + L L++Q PE +D
Sbjct: 3 EKVNKRDIAEKIQALRDELRDHNYRYYVLDEPVISDYDFDMKLKALQDLEKQHPEFYDPA 62
Query: 112 HPWNTVG 118
P VG
Sbjct: 63 SPTQRVG 69
>gi|256844676|ref|ZP_05550161.1| DNA ligase, NAD-dependent [Lactobacillus crispatus 125-2-CHN]
gi|256613217|gb|EEU18421.1| DNA ligase, NAD-dependent [Lactobacillus crispatus 125-2-CHN]
Length = 668
Score = 86.1 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 31/68 (45%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
+ ++ EA E L K + YY D P D +YD+ RL L+++FPE+
Sbjct: 1 MAEITLDEAKKEAASLRKQLNEWAEAYYSKDAPEVEDNVYDQSYNRLLELEKEFPEIVTP 60
Query: 111 DHPWNTVG 118
D VG
Sbjct: 61 DSITQRVG 68
>gi|229823252|ref|ZP_04449321.1| hypothetical protein GCWU000282_00550 [Catonella morbi ATCC 51271]
gi|229787418|gb|EEP23532.1| hypothetical protein GCWU000282_00550 [Catonella morbi ATCC 51271]
Length = 671
Score = 86.1 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 25/59 (42%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+E + + + YY LD L +D YD + L+ ++ PE D P VG
Sbjct: 9 QARLEEVKHLLNDYAYHYYVLDQSLVSDASYDALYRELEEIEAAHPEWITPDSPTQRVG 67
>gi|296128966|ref|YP_003636216.1| DNA ligase, NAD-dependent [Cellulomonas flavigena DSM 20109]
gi|296020781|gb|ADG74017.1| DNA ligase, NAD-dependent [Cellulomonas flavigena DSM 20109]
Length = 824
Score = 86.1 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 27/72 (37%), Gaps = 1/72 (1%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
A V + E L + Q YY D P +D YD L+ L+++ P
Sbjct: 6 PATDVQDV-PAEVRHRWTALAEQIRADQFAYYVRDAPSSSDAAYDERMRELERLEDEHPG 64
Query: 107 LFDEDHPWNTVG 118
L D P VG
Sbjct: 65 LRTPDSPTQQVG 76
>gi|303232470|ref|ZP_07319159.1| DNA ligase (NAD+) [Atopobium vaginae PB189-T1-4]
gi|302481435|gb|EFL44506.1| DNA ligase (NAD+) [Atopobium vaginae PB189-T1-4]
Length = 836
Score = 86.1 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Query: 32 AKFLPNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYD 91
A+ PN L+ + + + A + V L ++ +H YY LD+PL +D +D
Sbjct: 71 AQLQPNMPELD--VSQQEPPVDTHATVAALRVPELRRLLTYHAWRYYALDDPLISDAQFD 128
Query: 92 RVSERLDALQEQFPELFDEDHPWNTVG 118
+ L AL++ PEL VG
Sbjct: 129 AYLQELIALEQAHPELASPTSYTQRVG 155
>gi|227877013|ref|ZP_03995105.1| DNA ligase [Lactobacillus crispatus JV-V01]
gi|256850560|ref|ZP_05555986.1| DNA ligase [Lactobacillus crispatus MV-1A-US]
gi|227863384|gb|EEJ70811.1| DNA ligase [Lactobacillus crispatus JV-V01]
gi|256712583|gb|EEU27578.1| DNA ligase [Lactobacillus crispatus MV-1A-US]
Length = 668
Score = 86.1 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 31/68 (45%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
+ ++ EA E L K + YY D P D +YD+ RL L+++FPE+
Sbjct: 1 MAEITLDEAKKEAASLRKQLNEWAEAYYSKDAPEVEDNVYDQSYNRLLELEKEFPEIVTP 60
Query: 111 DHPWNTVG 118
D VG
Sbjct: 61 DSITQRVG 68
>gi|218509214|ref|ZP_03507092.1| NAD-dependent DNA ligase LigA [Rhizobium etli Brasil 5]
Length = 202
Score = 86.1 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 25/51 (49%)
Query: 68 KIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
K HH Y D +D YD + R DAL+ +FPEL ED P VG
Sbjct: 6 KEIAHHDALYQGKDQREISDADYDALKRRNDALEVRFPELIREDSPSRHVG 56
>gi|126649600|ref|ZP_01721841.1| NAD-dependent DNA ligase LigA [Bacillus sp. B14905]
gi|126593925|gb|EAZ87848.1| NAD-dependent DNA ligase LigA [Bacillus sp. B14905]
Length = 667
Score = 86.1 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 29/61 (47%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E + L K+ + YY LD P+ D +YD++ L AL+E P L D P V
Sbjct: 3 EIEQRIAELNKLLHEYGYAYYVLDKPVVADSVYDQLLHELIALEEANPSLIFPDSPTQRV 62
Query: 118 G 118
G
Sbjct: 63 G 63
>gi|169825829|ref|YP_001695987.1| DNA ligase [Lysinibacillus sphaericus C3-41]
gi|254781361|sp|B1HTW6|DNLJ_LYSSC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|168990317|gb|ACA37857.1| DNA ligase [Lysinibacillus sphaericus C3-41]
Length = 667
Score = 86.1 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 29/61 (47%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E + L K+ + YY LD P+ D +YD++ L AL+E P L D P V
Sbjct: 3 EIEQRIAELNKLLHEYGYAYYVLDKPVVADSVYDQLLHELIALEEANPSLIFPDSPTQRV 62
Query: 118 G 118
G
Sbjct: 63 G 63
>gi|313893283|ref|ZP_07826858.1| DNA ligase (NAD+) [Veillonella sp. oral taxon 158 str. F0412]
gi|313442179|gb|EFR60596.1| DNA ligase (NAD+) [Veillonella sp. oral taxon 158 str. F0412]
Length = 667
Score = 86.1 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 23/59 (38%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L + H Q YY D P +D YD+ L L+ PE P VG
Sbjct: 4 KDRIKELQQELTHAQYLYYVKDAPTMSDFEYDKKYRELVDLETAHPEYIVPSSPTQRVG 62
>gi|297559142|ref|YP_003678116.1| DNA ligase, NAD-dependent [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
gi|296843590|gb|ADH65610.1| DNA ligase, NAD-dependent [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
Length = 775
Score = 86.1 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
A T+ E L + H YY L P+ +D YD + L +++ +P
Sbjct: 2 SAPDTTTDIPDEVRARHTELCQELDDHSYRYY-LGTPVISDAEYDTLMRELVGIEDSYPA 60
Query: 107 LFDEDHPWNTVG 118
L +D P VG
Sbjct: 61 LATQDSPTQKVG 72
>gi|15604557|ref|NP_221075.1| NAD-dependent DNA ligase LigA [Rickettsia prowazekii str. Madrid E]
gi|6225281|sp|Q9ZCK9|DNLJ_RICPR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|3861252|emb|CAA15151.1| DNA LIGASE (lig) [Rickettsia prowazekii]
gi|292572364|gb|ADE30279.1| DNA ligase, NAD-dependent [Rickettsia prowazekii Rp22]
Length = 689
Score = 86.1 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 31/69 (44%)
Query: 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
+ +S+ EA ++ L + YY DNPL +D YD++ L+ FP L
Sbjct: 3 NIDLISEQEAKKLLKELADKIAMYNHAYYIEDNPLVSDSEYDQLFNINLKLENTFPHLVL 62
Query: 110 EDHPWNTVG 118
+ P VG
Sbjct: 63 SNSPSKKVG 71
>gi|218295128|ref|ZP_03495964.1| DNA ligase, NAD-dependent [Thermus aquaticus Y51MC23]
gi|218244331|gb|EED10856.1| DNA ligase, NAD-dependent [Thermus aquaticus Y51MC23]
Length = 674
Score = 86.1 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 32/65 (49%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ A V L + +H YY LD P +D YDR+ L L+E+FPEL D P
Sbjct: 1 MTLEAARRRVNELRDLIRYHNYLYYVLDAPEISDAEYDRLLRELKELEERFPELQSPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TEQVG 65
>gi|295692390|ref|YP_003601000.1| DNA ligase [Lactobacillus crispatus ST1]
gi|295030496|emb|CBL49975.1| DNA ligase [Lactobacillus crispatus ST1]
Length = 668
Score = 86.1 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 31/68 (45%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
+ ++ EA E L K + YY D P D +YD+ RL L+++FPE+
Sbjct: 1 MAEITLDEAKKEAASLRKQLNEWAEAYYSKDAPEVEDNVYDQSYNRLLELEKEFPEIVTP 60
Query: 111 DHPWNTVG 118
D VG
Sbjct: 61 DSITQRVG 68
>gi|312863154|ref|ZP_07723392.1| DNA ligase (NAD+) [Streptococcus vestibularis F0396]
gi|322516268|ref|ZP_08069198.1| NAD-dependent DNA ligase LigA [Streptococcus vestibularis ATCC
49124]
gi|311100690|gb|EFQ58895.1| DNA ligase (NAD+) [Streptococcus vestibularis F0396]
gi|322125241|gb|EFX96614.1| NAD-dependent DNA ligase LigA [Streptococcus vestibularis ATCC
49124]
Length = 652
Score = 86.1 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ LV + K YY DNP +D YD++ L L+ + PEL D P + VG
Sbjct: 2 EKRMKELVSKLNQYAKEYYTEDNPSVSDADYDKLYRELVDLEVEHPELVQADSPTHRVG 60
>gi|238019226|ref|ZP_04599652.1| hypothetical protein VEIDISOL_01090 [Veillonella dispar ATCC 17748]
gi|237863925|gb|EEP65215.1| hypothetical protein VEIDISOL_01090 [Veillonella dispar ATCC 17748]
Length = 667
Score = 86.1 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 23/59 (38%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L + H Q YY D P +D YD+ L L+ PE P VG
Sbjct: 4 KDRIKELQQELTHAQYLYYVKDAPTMSDFEYDKKYRELVDLETAHPEYIVPSSPTQRVG 62
>gi|73662196|ref|YP_300977.1| NAD-dependent DNA ligase [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|84028903|sp|Q49YU8|DNLJ_STAS1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|72494711|dbj|BAE18032.1| NAD-dependent DNA ligase [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
Length = 667
Score = 86.1 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ V+ L ++ + YY DNP D YD++ L ++ Q PE D P
Sbjct: 2 ADIQSRVDELHRLLNQYSYEYYVKDNPSVPDSEYDKLLHELIDIETQHPEYRTADSPTVR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|227892258|ref|ZP_04010063.1| NAD-dependent DNA ligase [Lactobacillus salivarius ATCC 11741]
gi|227865899|gb|EEJ73320.1| NAD-dependent DNA ligase [Lactobacillus salivarius ATCC 11741]
Length = 672
Score = 86.1 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 32/65 (49%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+S+ + +E++ L YY LD P D +YD+ +RL L++ P+L D P
Sbjct: 1 MSQKDIEMELKELRDKLNRWSNEYYVLDTPSVEDSVYDKHYQRLLELEQANPDLVTADSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SQRVG 65
>gi|315641089|ref|ZP_07896168.1| NAD-dependent DNA ligase LigA [Enterococcus italicus DSM 15952]
gi|315483097|gb|EFU73614.1| NAD-dependent DNA ligase LigA [Enterococcus italicus DSM 15952]
Length = 671
Score = 86.1 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 28/63 (44%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
K ++ L K + YY D P+ D YD++ ++L AL+ PE D P
Sbjct: 2 KQTVAEQIHDLQKKLTEYAYAYYVKDQPVVDDAYYDQLYQQLVALETAHPEYQTSDSPTQ 61
Query: 116 TVG 118
VG
Sbjct: 62 RVG 64
>gi|81749525|sp|Q8FPZ7|DNLJ_COREF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|23493177|dbj|BAC18148.1| putative DNA ligase [Corynebacterium efficiens YS-314]
Length = 938
Score = 86.1 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 3/84 (3%)
Query: 35 LPNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVS 94
+P A+ L+ + L + +H+ YY P D +D +
Sbjct: 246 VPPPDAIRDHLESGTVTDD--NAQLRRTWNELAEKVRYHRDLYYNQ-QPEIPDADFDALF 302
Query: 95 ERLDALQEQFPELFDEDHPWNTVG 118
+L L+EQ PEL D P VG
Sbjct: 303 RQLQDLEEQHPELAVPDSPTKEVG 326
>gi|323490410|ref|ZP_08095622.1| DNA ligase [Planococcus donghaensis MPA1U2]
gi|323395909|gb|EGA88743.1| DNA ligase [Planococcus donghaensis MPA1U2]
Length = 668
Score = 86.1 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 33/65 (50%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + +A V+ L ++ ++ YY LD P D +YD++ L L+ +P+L D P
Sbjct: 1 MDRLKAEQRVDELNEMLRNYGHAYYVLDKPAVPDAIYDQLLNELIDLETLYPDLVFPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|300214970|gb|ADJ79386.1| DNA ligase(Polydeoxyribonucleotide synthase [NAD+]) [Lactobacillus
salivarius CECT 5713]
Length = 672
Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 32/65 (49%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+S+ + +E++ L YY LD P D +YD+ +RL L++ P+L D P
Sbjct: 1 MSQKDIEMELKELRDKLNRWSNEYYVLDTPSVEDSVYDKHYQRLLELEQANPDLVTADSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SQRVG 65
>gi|227893041|ref|ZP_04010846.1| DNA ligase [Lactobacillus ultunensis DSM 16047]
gi|227865154|gb|EEJ72575.1| DNA ligase [Lactobacillus ultunensis DSM 16047]
Length = 667
Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 29/68 (42%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
+T ++ EA E L YY D P D +YD+ RL L+ QFPE+
Sbjct: 1 MTEITLDEAKKEAASLRTQLNEWADAYYSKDAPEVEDNVYDQSYNRLLELERQFPEIVTP 60
Query: 111 DHPWNTVG 118
D VG
Sbjct: 61 DSITQRVG 68
>gi|289644234|ref|ZP_06476323.1| DNA ligase, NAD-dependent [Frankia symbiont of Datisca glomerata]
gi|289505957|gb|EFD26967.1| DNA ligase, NAD-dependent [Frankia symbiont of Datisca glomerata]
Length = 713
Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
H YY LD+P +D YD++ L L+ ++P L D P V
Sbjct: 41 EHAFRYYVLDSPTVSDAEYDQLMAELTQLETRYPGLRTPDSPTQKV 86
>gi|299535244|ref|ZP_07048568.1| DNA ligase [Lysinibacillus fusiformis ZC1]
gi|298729365|gb|EFI69916.1| DNA ligase [Lysinibacillus fusiformis ZC1]
Length = 667
Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 30/61 (49%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E + L K+ + YY LD P+ D +YD++ + L AL+E P L D P V
Sbjct: 3 EIEQRIAELNKLLHEYGYAYYVLDKPVVADSVYDQLLQELIALEEANPSLIYPDSPTQRV 62
Query: 118 G 118
G
Sbjct: 63 G 63
>gi|300704237|ref|YP_003745840.1| DNA ligase [Ralstonia solanacearum CFBP2957]
gi|299071901|emb|CBJ43230.1| DNA ligase [Ralstonia solanacearum CFBP2957]
Length = 813
Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 23/48 (47%)
Query: 71 LHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ YY LD P D YDR+ L+AL+ + P L D P VG
Sbjct: 25 NRYAHEYYVLDQPSVPDAEYDRLYRELEALEAEHPALRTPDSPTLRVG 72
>gi|42519595|ref|NP_965525.1| NAD-dependent DNA ligase [Lactobacillus johnsonii NCC 533]
gi|81667534|sp|Q74I49|DNLJ_LACJO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|41583884|gb|AAS09491.1| NAD-dependent DNA ligase [Lactobacillus johnsonii NCC 533]
Length = 668
Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 32/65 (49%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
L+ EA +V+ L K YY D P+ D +YD+ + L L+EQFP+L D
Sbjct: 4 LTHNEASQKVDELRKKLDKWADDYYAKDAPVVEDAVYDKTYQELVELEEQFPDLVTADSI 63
Query: 114 WNTVG 118
VG
Sbjct: 64 TQRVG 68
>gi|326797492|ref|YP_004315311.1| DNA ligase [Sphingobacterium sp. 21]
gi|326548256|gb|ADZ76641.1| DNA ligase [Sphingobacterium sp. 21]
Length = 672
Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + +A+ +E L K H YY L P +D +D+ L AL++ +PE D D P
Sbjct: 1 MQRNDALSRIEALTKELNDHNYKYYVLAQPSISDFDFDQKLAELAALEKDYPEFLDPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQKVG 65
>gi|255691906|ref|ZP_05415581.1| DNA ligase, NAD-dependent [Bacteroides finegoldii DSM 17565]
gi|260622459|gb|EEX45330.1| DNA ligase, NAD-dependent [Bacteroides finegoldii DSM 17565]
Length = 666
Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 26/61 (42%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+ +E L H YY L+ P +D +D L L+E PE DE+ P V
Sbjct: 2 DIKGRIEELRAELHRHNYNYYVLNAPEISDKEFDDKMRELQDLEEAHPEYKDENSPTMRV 61
Query: 118 G 118
G
Sbjct: 62 G 62
>gi|90962320|ref|YP_536236.1| NAD-dependent DNA ligase [Lactobacillus salivarius UCC118]
gi|123391334|sp|Q1WSH6|DNLJ_LACS1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|90821514|gb|ABE00153.1| NAD-dependent DNA ligase [Lactobacillus salivarius UCC118]
Length = 672
Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 32/65 (49%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+S+ + +E++ L YY LD P D +YD+ +RL L++ P+L D P
Sbjct: 1 MSQKDIEMELKELRNKLNRWSNEYYVLDTPSVEDSVYDKHYQRLLELEQANPDLVTADSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SQRVG 65
>gi|301299742|ref|ZP_07205992.1| DNA ligase (NAD(+)) [Lactobacillus salivarius ACS-116-V-Col5a]
gi|300852673|gb|EFK80307.1| DNA ligase (NAD(+)) [Lactobacillus salivarius ACS-116-V-Col5a]
Length = 672
Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 32/65 (49%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+S+ + +E++ L YY LD P D +YD+ +RL L++ P+L D P
Sbjct: 1 MSQKDIEMELKELRDKLNRWSNEYYVLDTPSVEDSVYDKHYQRLLELEQANPDLVTADSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SQRVG 65
>gi|251809892|ref|ZP_04824365.1| DNA ligase, NAD-dependent [Staphylococcus epidermidis BCM-HMP0060]
gi|282874546|ref|ZP_06283431.1| DNA ligase (NAD(+)) [Staphylococcus epidermidis SK135]
gi|293367782|ref|ZP_06614431.1| DNA ligase [Staphylococcus epidermidis M23864:W2(grey)]
gi|251806557|gb|EES59214.1| DNA ligase, NAD-dependent [Staphylococcus epidermidis BCM-HMP0060]
gi|281296685|gb|EFA89194.1| DNA ligase (NAD(+)) [Staphylococcus epidermidis SK135]
gi|291318121|gb|EFE58518.1| DNA ligase [Staphylococcus epidermidis M23864:W2(grey)]
gi|329734727|gb|EGG71033.1| DNA ligase (NAD+) [Staphylococcus epidermidis VCU045]
gi|329734798|gb|EGG71103.1| DNA ligase (NAD+) [Staphylococcus epidermidis VCU028]
Length = 665
Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 28/62 (45%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ VE L + + YY DNP D YD++ L ++E++PE D P
Sbjct: 2 QDVKKRVEKLHDLLNQYSYEYYVQDNPSVPDSEYDKLLHELIEIEEKYPEFKSTDSPTVR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|237713195|ref|ZP_04543676.1| DNA ligase [Bacteroides sp. D1]
gi|262406666|ref|ZP_06083215.1| DNA ligase, NAD-dependent [Bacteroides sp. 2_1_22]
gi|294643460|ref|ZP_06721274.1| DNA ligase (NAD(+)) [Bacteroides ovatus SD CC 2a]
gi|294808131|ref|ZP_06766900.1| DNA ligase (NAD(+)) [Bacteroides xylanisolvens SD CC 1b]
gi|229446662|gb|EEO52453.1| DNA ligase [Bacteroides sp. D1]
gi|262355369|gb|EEZ04460.1| DNA ligase, NAD-dependent [Bacteroides sp. 2_1_22]
gi|292641208|gb|EFF59412.1| DNA ligase (NAD(+)) [Bacteroides ovatus SD CC 2a]
gi|294444674|gb|EFG13372.1| DNA ligase (NAD(+)) [Bacteroides xylanisolvens SD CC 1b]
Length = 666
Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 27/61 (44%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+ ++E L H YY L+ P +D +D L L++ PE DE+ P V
Sbjct: 2 DIKEKIEELRAELHRHNYNYYVLNAPEISDKEFDDKMRELQDLEQAHPEYKDENSPTMRV 61
Query: 118 G 118
G
Sbjct: 62 G 62
>gi|27468507|ref|NP_765144.1| DNA ligase [Staphylococcus epidermidis ATCC 12228]
gi|81843559|sp|Q8CRU0|DNLJ_STAES RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|27316054|gb|AAO05188.1|AE016749_134 DNA ligase [Staphylococcus epidermidis ATCC 12228]
Length = 665
Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 28/62 (45%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ VE L + + YY DNP D YD++ L ++E++PE D P
Sbjct: 2 QDVKKRVEKLHDLLNQYSYEYYVQDNPSVPDSEYDKLLHELIEIEEKYPEFKSTDSPTVR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|299145622|ref|ZP_07038690.1| DNA ligase, NAD-dependent [Bacteroides sp. 3_1_23]
gi|298516113|gb|EFI39994.1| DNA ligase, NAD-dependent [Bacteroides sp. 3_1_23]
Length = 666
Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 27/61 (44%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+ ++E L H YY L+ P +D +D L L++ PE DE+ P V
Sbjct: 2 DIKEKIEELRAELHRHNYNYYVLNAPEISDKEFDDKMRELQDLEQAHPEYKDENSPTMRV 61
Query: 118 G 118
G
Sbjct: 62 G 62
>gi|237717569|ref|ZP_04548050.1| DNA ligase [Bacteroides sp. 2_2_4]
gi|293371586|ref|ZP_06618001.1| DNA ligase (NAD(+)) [Bacteroides ovatus SD CMC 3f]
gi|229453155|gb|EEO58946.1| DNA ligase [Bacteroides sp. 2_2_4]
gi|292633449|gb|EFF52017.1| DNA ligase (NAD(+)) [Bacteroides ovatus SD CMC 3f]
Length = 666
Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 27/61 (44%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+ ++E L H YY L+ P +D +D L L++ PE DE+ P V
Sbjct: 2 DIKEKIEELRAELHRHNYNYYVLNAPEISDKEFDDKMRELQDLEQAHPEYKDENSPTMRV 61
Query: 118 G 118
G
Sbjct: 62 G 62
>gi|332884007|gb|EGK04287.1| DNA ligase [Dysgonomonas mossii DSM 22836]
Length = 665
Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ +++ L + H YY L P +D +D+ + L L+ Q+PE FD + P
Sbjct: 2 DQIKHQIDTLREELNKHNYDYYVLSAPTISDFEFDKKLKELTDLETQYPEYFDPNSPSQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|319399869|gb|EFV88116.1| DNA ligase, NAD-dependent [Staphylococcus epidermidis FRI909]
Length = 665
Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 28/62 (45%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ VE L + + YY DNP D YD++ L ++E++PE D P
Sbjct: 2 QDVKKRVEKLHDLLNQYSYEYYVQDNPSVPDSEYDKLLHELIEIEEKYPEFKSTDSPTVR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|242241743|ref|ZP_04796188.1| DNA ligase [Staphylococcus epidermidis W23144]
gi|242234833|gb|EES37144.1| DNA ligase [Staphylococcus epidermidis W23144]
Length = 665
Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 28/62 (45%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ VE L + + YY DNP D YD++ L ++E++PE D P
Sbjct: 2 QDVKKRVEKLHDLLNQYSYEYYVQDNPSVPDSEYDKLLHELIEIEEKYPEFKSTDSPTVR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|57867376|ref|YP_189011.1| DNA ligase, NAD-dependent [Staphylococcus epidermidis RP62A]
gi|81674000|sp|Q5HN30|DNLJ_STAEQ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|57638034|gb|AAW54822.1| DNA ligase, NAD-dependent [Staphylococcus epidermidis RP62A]
Length = 665
Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 27/60 (45%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
VE L + + YY DNP D YD++ L ++E++PE D P VG
Sbjct: 4 VKKRVEKLHDLLNQYSYEYYVQDNPSVPDSEYDKLLHELIEIEEKYPEFKSTDSPTVRVG 63
>gi|160884627|ref|ZP_02065630.1| hypothetical protein BACOVA_02616 [Bacteroides ovatus ATCC 8483]
gi|156110366|gb|EDO12111.1| hypothetical protein BACOVA_02616 [Bacteroides ovatus ATCC 8483]
Length = 666
Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 27/61 (44%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+ ++E L H YY L+ P +D +D L L++ PE DE+ P V
Sbjct: 2 DIKEKIEELRAELHRHNYNYYVLNAPEISDKEFDDKMRELQDLEQAHPEYKDENSPTMRV 61
Query: 118 G 118
G
Sbjct: 62 G 62
>gi|317495223|ref|ZP_07953593.1| DNA ligase [Gemella moribillum M424]
gi|316914645|gb|EFV36121.1| DNA ligase [Gemella moribillum M424]
Length = 663
Score = 85.3 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 32/62 (51%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
E+ LV + + YY DNP +D YD + ++L+ L++++PE ++ P
Sbjct: 2 EHIKEEIFKLVALLNKYSYDYYVEDNPQISDTEYDTLYKQLEKLEQEYPEFILDNSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|298484007|ref|ZP_07002176.1| DNA ligase, NAD-dependent [Bacteroides sp. D22]
gi|298269788|gb|EFI11380.1| DNA ligase, NAD-dependent [Bacteroides sp. D22]
Length = 666
Score = 85.3 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 27/61 (44%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+ ++E L H YY L+ P +D +D L L++ PE DE+ P V
Sbjct: 2 DIKEKIEELRAELHRHNYNYYVLNAPEISDKEFDDKMRELQDLEQAHPEYKDENSPTMRV 61
Query: 118 G 118
G
Sbjct: 62 G 62
>gi|224025865|ref|ZP_03644231.1| hypothetical protein BACCOPRO_02607 [Bacteroides coprophilus DSM
18228]
gi|224019101|gb|EEF77099.1| hypothetical protein BACCOPRO_02607 [Bacteroides coprophilus DSM
18228]
Length = 665
Score = 85.3 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+++ E ++ L + H YY L+ P+ +D +D++ L L+ + PE FD P
Sbjct: 1 MTETE---RIDQLREELHRHNHNYYILNAPVISDQEFDKLMRELQDLEARHPEHFDPTSP 57
Query: 114 WNTVG 118
VG
Sbjct: 58 SMRVG 62
>gi|295084199|emb|CBK65722.1| DNA ligase, NAD-dependent [Bacteroides xylanisolvens XB1A]
Length = 666
Score = 85.3 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 27/61 (44%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+ ++E L H YY L+ P +D +D L L++ PE DE+ P V
Sbjct: 2 DIKEKIEELRAELHRHNYNYYVLNAPEISDKEFDDKMRELQDLEQAHPEYKDENSPTMRV 61
Query: 118 G 118
G
Sbjct: 62 G 62
>gi|116873191|ref|YP_849972.1| NAD-dependent DNA ligase LigA [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|123466434|sp|A0AJL1|DNLJ_LISW6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|116742069|emb|CAK21193.1| DNA ligase [Listeria welshimeri serovar 6b str. SLCC5334]
Length = 670
Score = 85.3 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 26/59 (44%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E L+ I + YY +DNP D YD+ + L ++E PE D P VG
Sbjct: 4 KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIEEAHPEWVTPDSPSKRVG 62
>gi|87308785|ref|ZP_01090924.1| DNA ligase [Blastopirellula marina DSM 3645]
gi|87288496|gb|EAQ80391.1| DNA ligase [Blastopirellula marina DSM 3645]
Length = 679
Score = 85.3 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
E+++L H + YY +D YD++ RL L+ + P+L D P
Sbjct: 2 AAVQEEIDHLRAEIRRHDRMYYVEAKTEISDLEYDQLLNRLKHLEAENPQLVTPDSPTQR 61
Query: 117 VG 118
+G
Sbjct: 62 IG 63
>gi|72383117|ref|YP_292472.1| NAD-dependent DNA ligase [Prochlorococcus marinus str. NATL2A]
gi|123746237|sp|Q46IA9|DNLJ_PROMT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|72002967|gb|AAZ58769.1| NAD-dependent DNA ligase [Prochlorococcus marinus str. NATL2A]
Length = 690
Score = 85.3 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 26/58 (44%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L + YY LD+P D +YD++ L ++ P L +D P +G
Sbjct: 10 ERIKELRALLNKANYSYYVLDSPEIDDSVYDQLYRELIEIENIHPSLITDDSPSQRLG 67
>gi|332766219|gb|EGJ96429.1| DNA ligase, NAD-dependent [Shigella flexneri 2930-71]
Length = 647
Score = 85.3 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 80 LDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+D P D YDR+ L L+ + PEL D P VG
Sbjct: 1 MDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVG 39
>gi|260175035|ref|ZP_05761447.1| DNA ligase [Bacteroides sp. D2]
gi|315923266|ref|ZP_07919506.1| DNA ligase [Bacteroides sp. D2]
gi|313697141|gb|EFS33976.1| DNA ligase [Bacteroides sp. D2]
Length = 666
Score = 85.3 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 27/61 (44%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+ ++E L H YY L+ P +D +D L L++ PE DE+ P V
Sbjct: 2 DIKEKIEELRAELHRHNYNYYVLNAPEISDKEFDDKMRELQDLEQAHPEYKDENSPTMRV 61
Query: 118 G 118
G
Sbjct: 62 G 62
>gi|24379931|ref|NP_721886.1| NAD-dependent DNA ligase LigA [Streptococcus mutans UA159]
gi|81451132|sp|Q8DT49|DNLJ_STRMU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|24377912|gb|AAN59192.1|AE014986_3 DNA ligase [Streptococcus mutans UA159]
Length = 652
Score = 85.3 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 31/59 (52%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV++ + + YY DNP +D YD++ L L+++FPE + P + VG
Sbjct: 2 KERMNELVQLLNQYAREYYTKDNPSVSDAEYDKLYRELVELEKEFPEDILPNSPTHRVG 60
>gi|329959979|ref|ZP_08298475.1| DNA ligase [Bacteroides fluxus YIT 12057]
gi|328533113|gb|EGF59882.1| DNA ligase [Bacteroides fluxus YIT 12057]
Length = 665
Score = 85.3 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
A +++ L H YY L+ P +D +D L L+++ PE DE+ P VG
Sbjct: 3 AKEKIDRLRAELHQHNYNYYVLNAPEISDKEFDDKMHELQNLEKEHPEYQDENSPTMRVG 62
>gi|262199205|ref|YP_003270414.1| DNA ligase, NAD-dependent [Haliangium ochraceum DSM 14365]
gi|262082552|gb|ACY18521.1| DNA ligase, NAD-dependent [Haliangium ochraceum DSM 14365]
Length = 751
Score = 85.3 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 32/66 (48%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+S A E LV H + YY P+ +D YD++ ++L A++E+ P E P
Sbjct: 1 MSDDTARAEYLGLVDELSDHDRRYYVEAEPIISDVEYDKLLKKLRAIEEEHPAWVVEWSP 60
Query: 114 WNTVGY 119
VG+
Sbjct: 61 TQRVGH 66
>gi|1352293|sp|P49422|DNLJ_THESC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|609276|emb|CAA82645.1| DNA ligase [Thermus scotoductus]
gi|1093606|prf||2104272A DNA ligase
Length = 674
Score = 85.3 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 33/65 (50%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ EA V L + +H YY L +P +D YDR+ L L+E+FPEL D P
Sbjct: 1 MTLEEARKRVNELRDLIRYHNYRYYVLADPEISDAEYDRLLRELKELEERFPELKSPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TEQVG 65
>gi|270296700|ref|ZP_06202899.1| DNA ligase, NAD-dependent [Bacteroides sp. D20]
gi|270272687|gb|EFA18550.1| DNA ligase, NAD-dependent [Bacteroides sp. D20]
Length = 665
Score = 85.3 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 28/60 (46%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L H YY L+ P +D +D + L L+++ PE D++ P VG
Sbjct: 3 VKEKIDQLRAELHQHNYNYYVLNAPEISDKEFDDLMRELQDLEKEHPEYQDDNSPTMRVG 62
>gi|326804258|ref|YP_004322076.1| DNA ligase (NAD+) [Aerococcus urinae ACS-120-V-Col10a]
gi|326651204|gb|AEA01387.1| DNA ligase (NAD+) [Aerococcus urinae ACS-120-V-Col10a]
Length = 677
Score = 85.3 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 49 KKVTSLSKGEAMIE-VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
K+ + +A+ E + LV + YY LD P +D YD+ +L+ L+ P+L
Sbjct: 3 KENPAQENQQAVQERMAALVDQLNQYAHEYYVLDQPSVSDDHYDKTYRQLEELEASHPDL 62
Query: 108 FDEDHPWNTVG 118
D P VG
Sbjct: 63 IQSDSPTQRVG 73
>gi|160889578|ref|ZP_02070581.1| hypothetical protein BACUNI_02004 [Bacteroides uniformis ATCC 8492]
gi|317480069|ref|ZP_07939180.1| DNA ligase [Bacteroides sp. 4_1_36]
gi|156861095|gb|EDO54526.1| hypothetical protein BACUNI_02004 [Bacteroides uniformis ATCC 8492]
gi|316903746|gb|EFV25589.1| DNA ligase [Bacteroides sp. 4_1_36]
Length = 665
Score = 85.3 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 28/60 (46%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L H YY L+ P +D +D + L L+++ PE D++ P VG
Sbjct: 3 VKEKIDQLRAELHQHNYNYYVLNAPEISDKEFDDLMRELQDLEKEHPEYQDDNSPTMRVG 62
>gi|298712196|emb|CBJ33067.1| DNA ligase, NAD-dependent [Ectocarpus siliculosus]
Length = 1170
Score = 85.3 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 34/72 (47%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
+ K V +L + EA E+E L + H YY D P TD YD + R ++ FP
Sbjct: 168 RFKDVATLEEAEAAAELEALSEEIAAHDVRYYLEDVPSVTDAEYDALRLRNGEIEAAFPS 227
Query: 107 LFDEDHPWNTVG 118
L D P + VG
Sbjct: 228 LVRSDSPSSRVG 239
>gi|184201319|ref|YP_001855526.1| NAD-dependent DNA ligase [Kocuria rhizophila DC2201]
gi|254781351|sp|B2GL64|DNLJ_KOCRD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|183581549|dbj|BAG30020.1| NAD(+)-dependent DNA ligase [Kocuria rhizophila DC2201]
Length = 766
Score = 85.3 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 5/83 (6%)
Query: 36 PNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSE 95
P A L+ + +L E L + YY D P+ +D YD++
Sbjct: 11 PATDANGQSLNPEEPSEAL-----REEYAQLSDRVREARAAYYVHDQPVISDAEYDQLYR 65
Query: 96 RLDALQEQFPELFDEDHPWNTVG 118
L+ + PEL D P VG
Sbjct: 66 SLEEFEALHPELKANDSPTQEVG 88
>gi|224543223|ref|ZP_03683762.1| hypothetical protein CATMIT_02423 [Catenibacterium mitsuokai DSM
15897]
gi|224523856|gb|EEF92961.1| hypothetical protein CATMIT_02423 [Catenibacterium mitsuokai DSM
15897]
Length = 664
Score = 84.9 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 25/58 (43%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L + + YY DNP +D YDR+ E L +++ P D P VG
Sbjct: 7 ERLNELKALLNKYNYEYYVQDNPTVSDQEYDRLMEELIRIEQVNPAWITTDSPSQRVG 64
>gi|327541957|gb|EGF28460.1| NAD-dependent DNA ligase LigA [Rhodopirellula baltica WH47]
Length = 754
Score = 84.9 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
V+ LV H + YY P TD YD++ L L+ ++PEL D P
Sbjct: 58 DSIASRVQQLVDEINRHNRLYYDDAAPEITDLQYDQLLAELTQLENEYPELRQPDSPTQL 117
Query: 117 VG 118
VG
Sbjct: 118 VG 119
>gi|256372325|ref|YP_003110149.1| DNA ligase, NAD-dependent [Acidimicrobium ferrooxidans DSM 10331]
gi|256008909|gb|ACU54476.1| DNA ligase, NAD-dependent [Acidimicrobium ferrooxidans DSM 10331]
Length = 664
Score = 84.9 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
A V L + + YY D+P+ +D +D + L AL+ PEL D P
Sbjct: 3 ESAAARVAALRSLIQRASEAYYVADDPIMSDDEFDGLVLELRALEAAHPELRSPDSPTER 62
Query: 117 VG 118
VG
Sbjct: 63 VG 64
>gi|227512904|ref|ZP_03942953.1| NAD-dependent DNA ligase [Lactobacillus buchneri ATCC 11577]
gi|227083904|gb|EEI19216.1| NAD-dependent DNA ligase [Lactobacillus buchneri ATCC 11577]
Length = 675
Score = 84.9 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 30/67 (44%)
Query: 52 TSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
+++ +A L + YY D+P D +YD+ ++L L+ FP++ D
Sbjct: 4 EDMTEQQAESAARELREKLNKWADEYYTYDSPSVEDSVYDQTYQQLVDLETTFPQIVTPD 63
Query: 112 HPWNTVG 118
P VG
Sbjct: 64 SPTQKVG 70
>gi|300709542|ref|YP_003735356.1| NAD-dependent DNA ligase LigA [Halalkalicoccus jeotgali B3]
gi|299123225|gb|ADJ13564.1| NAD-dependent DNA ligase LigA [Halalkalicoccus jeotgali B3]
Length = 703
Score = 84.9 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 49 KKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF 108
+ L EA E L + HH + YY ++P D YD + +RL ++E F L
Sbjct: 18 TPIDELD--EAEREARRLREAIRHHDRRYYVENDPEIADRTYDTLFQRLVDIEESF-GLQ 74
Query: 109 DEDHPWNTVG 118
D P VG
Sbjct: 75 IPDSPTRRVG 84
>gi|309805852|ref|ZP_07699887.1| NAD-dependent DNA ligase adenylation domain protein [Lactobacillus
iners LactinV 03V1-b]
gi|308167761|gb|EFO69905.1| NAD-dependent DNA ligase adenylation domain protein [Lactobacillus
iners LactinV 03V1-b]
Length = 109
Score = 84.9 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
++ LS +A +EV L K YY D P+ D +YD+V ++L L++++P L D
Sbjct: 1 MSELSLAQAKLEVLKLRKQLDSWAYAYYVQDAPVVEDNIYDQVYQQLLELEQKYPVLIDP 60
Query: 111 DHPWNTVG 118
D VG
Sbjct: 61 DSITQRVG 68
>gi|227523032|ref|ZP_03953081.1| NAD-dependent DNA ligase [Lactobacillus hilgardii ATCC 8290]
gi|227089850|gb|EEI25162.1| NAD-dependent DNA ligase [Lactobacillus hilgardii ATCC 8290]
Length = 675
Score = 84.9 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 30/67 (44%)
Query: 52 TSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
+++ +A L + YY D+P D +YD+ ++L L+ FP++ D
Sbjct: 4 EDMTEQQAESAARELREKLNKWADEYYTYDSPSVEDSVYDQTYQQLVDLETTFPQIVTPD 63
Query: 112 HPWNTVG 118
P VG
Sbjct: 64 SPTQKVG 70
>gi|329897281|ref|ZP_08272019.1| DNA ligase [gamma proteobacterium IMCC3088]
gi|328921277|gb|EGG28673.1| DNA ligase [gamma proteobacterium IMCC3088]
Length = 674
Score = 84.9 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 27/63 (42%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
+ + L+ + + + YY D P +D YD++ L L+ Q P+ D P
Sbjct: 2 PADPAKRIAELIALIERYSQEYYEHDAPSISDAEYDQLFRELQTLEVQNPQYARRDSPTQ 61
Query: 116 TVG 118
VG
Sbjct: 62 RVG 64
>gi|284032790|ref|YP_003382721.1| DNA ligase, NAD-dependent [Kribbella flavida DSM 17836]
gi|283812083|gb|ADB33922.1| DNA ligase, NAD-dependent [Kribbella flavida DSM 17836]
Length = 709
Score = 84.9 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
E L + H+ YY + +D +D + L +++Q+ EL D P
Sbjct: 17 PAEVRERHAALSREIEEHRFRYY-MATSTISDADFDALMHELQGIEQQYQELRTPDSPTQ 75
Query: 116 TVG 118
VG
Sbjct: 76 KVG 78
>gi|189465636|ref|ZP_03014421.1| hypothetical protein BACINT_01996 [Bacteroides intestinalis DSM
17393]
gi|189437910|gb|EDV06895.1| hypothetical protein BACINT_01996 [Bacteroides intestinalis DSM
17393]
Length = 665
Score = 84.9 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 27/60 (45%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
A +++ L H YY L+ P +D +D + L ++ + PE DE P VG
Sbjct: 3 AKEKIDQLRAELHRHNYNYYVLNAPEISDKEFDDMMRELQEMEREHPEYQDETSPTMRVG 62
>gi|257060505|ref|YP_003138393.1| DNA ligase, NAD-dependent [Cyanothece sp. PCC 8802]
gi|256590671|gb|ACV01558.1| DNA ligase, NAD-dependent [Cyanothece sp. PCC 8802]
Length = 674
Score = 84.9 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 24/45 (53%)
Query: 74 QKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LDNP+ D +YD++ L L+ Q+P L D P VG
Sbjct: 23 NYAYYVLDNPIMEDSVYDQLYRELQDLESQYPILITPDSPTQRVG 67
>gi|225013054|ref|ZP_03703469.1| DNA ligase (NAD(+)) [Flavobacteria bacterium MS024-2A]
gi|225002782|gb|EEG40763.1| DNA ligase (NAD(+)) [Flavobacteria bacterium MS024-2A]
Length = 183
Score = 84.9 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 36/62 (58%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
E ++E L ++ H YY LD+P+ +D +D++ ++L+ L+ Q P+L D + P
Sbjct: 2 QEIRNKIEALREVLHDHNHRYYILDDPIISDYEFDQLLQQLNELEVQNPDLTDLNSPTRR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|297623824|ref|YP_003705258.1| DNA ligase, NAD-dependent [Truepera radiovictrix DSM 17093]
gi|297165004|gb|ADI14715.1| DNA ligase, NAD-dependent [Truepera radiovictrix DSM 17093]
Length = 681
Score = 84.9 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 22/45 (48%)
Query: 74 QKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY L +P +D +DR+ L L+E PEL D P VG
Sbjct: 22 NYRYYVLQDPELSDAEWDRLFHELKRLEETHPELRTPDSPTQRVG 66
>gi|51473890|ref|YP_067647.1| NAD-dependent DNA ligase LigA [Rickettsia typhi str. Wilmington]
gi|81389976|sp|Q68W27|DNLJ_RICTY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|51460202|gb|AAU04165.1| DNA joinase [Rickettsia typhi str. Wilmington]
Length = 693
Score = 84.9 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 31/69 (44%)
Query: 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
+ +S+ EA +E L + YY DNPL +D YD++ L+ FP L
Sbjct: 3 NIDLISEKEAKKLLEELADKIAMYNHAYYIEDNPLVSDSEYDQLFNLNLKLENTFPHLVL 62
Query: 110 EDHPWNTVG 118
+ P +G
Sbjct: 63 SNSPSKKIG 71
>gi|323342976|ref|ZP_08083207.1| NAD-dependent DNA ligase LigA [Erysipelothrix rhusiopathiae ATCC
19414]
gi|322463040|gb|EFY08235.1| NAD-dependent DNA ligase LigA [Erysipelothrix rhusiopathiae ATCC
19414]
Length = 659
Score = 84.9 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 28/60 (46%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ + L K + Y+ +D P D YD++ L+ L+ + PE FD + P VG
Sbjct: 2 SKERILALRKKLHQYNYEYHVMDQPTIADVEYDQLLRELNELEVKHPEFFDINSPTQKVG 61
>gi|323464000|gb|ADX76153.1| DNA ligase, NAD-dependent [Staphylococcus pseudintermedius ED99]
Length = 667
Score = 84.9 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 27/60 (45%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
VE L K+ + Y+ DNP D YD++ L ++ + PEL D P VG
Sbjct: 4 IAQRVEILHKLLHQYNYEYHVQDNPSVPDSEYDKLLHELIDIETKHPELKTSDSPTVRVG 63
>gi|70726048|ref|YP_252962.1| DNA ligase [Staphylococcus haemolyticus JCSC1435]
gi|84028902|sp|Q4L7L9|DNLJ_STAHJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|68446772|dbj|BAE04356.1| DNA ligase [Staphylococcus haemolyticus JCSC1435]
Length = 667
Score = 84.9 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 24/60 (40%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
V L + + YY DNP D YD++ L ++E PE D P VG
Sbjct: 4 IKSRVNELHDLLNQYGYEYYVQDNPSVPDSEYDKLLRELIDIEEAHPEFKSPDSPTVRVG 63
>gi|319892947|ref|YP_004149822.1| DNA ligase [Staphylococcus pseudintermedius HKU10-03]
gi|317162643|gb|ADV06186.1| DNA ligase [Staphylococcus pseudintermedius HKU10-03]
Length = 667
Score = 84.9 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 27/60 (45%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
VE L K+ + Y+ DNP D YD++ L ++ + PEL D P VG
Sbjct: 4 IAQRVEILHKLLHQYNYEYHVQDNPSVPDSEYDKLLHELIDIETKHPELKTSDSPTVRVG 63
>gi|288801242|ref|ZP_06406697.1| DNA ligase, NAD-dependent [Prevotella sp. oral taxon 299 str.
F0039]
gi|288331853|gb|EFC70336.1| DNA ligase, NAD-dependent [Prevotella sp. oral taxon 299 str.
F0039]
Length = 666
Score = 84.9 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ + + L K H YY L+ P D +D + L +L+ PE++D + P
Sbjct: 1 MTTEQ--ERIIELRKELHQHNYNYYVLNAPQIDDFTFDALLHELQSLENAHPEMYDANSP 58
Query: 114 WNTVG 118
VG
Sbjct: 59 TQRVG 63
>gi|218248171|ref|YP_002373542.1| NAD-dependent DNA ligase [Cyanothece sp. PCC 8801]
gi|254781307|sp|B7K0A2|DNLJ_CYAP8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|218168649|gb|ACK67386.1| DNA ligase, NAD-dependent [Cyanothece sp. PCC 8801]
Length = 674
Score = 84.9 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 24/45 (53%)
Query: 74 QKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LDNP+ D +YD++ L L+ Q+P L D P VG
Sbjct: 23 NYAYYVLDNPIMEDSVYDQLYRELQDLESQYPILITPDSPTQRVG 67
>gi|294793797|ref|ZP_06758934.1| DNA ligase, NAD-dependent [Veillonella sp. 3_1_44]
gi|294455367|gb|EFG23739.1| DNA ligase, NAD-dependent [Veillonella sp. 3_1_44]
Length = 667
Score = 84.9 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 23/59 (38%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L + H Q YY D P +D YD+ L L+ PE P VG
Sbjct: 4 KDRIKELQQELTHAQYLYYVKDAPTMSDFEYDKKYRELVDLETAHPEYIVSSSPTQRVG 62
>gi|330685564|gb|EGG97210.1| DNA ligase (NAD+) [Staphylococcus epidermidis VCU121]
Length = 668
Score = 84.5 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ V+ L + + YY DNP D YD++ L ++E+ PE D P
Sbjct: 2 SQLQNRVDELHDLLNQYSYEYYVQDNPSVPDSEYDKLLHELIHIEEEHPEFKTPDSPTVR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|89054995|ref|YP_510446.1| DNA ligase, NAD-dependent [Jannaschia sp. CCS1]
gi|123401112|sp|Q28PE1|DNLJ_JANSC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|88864544|gb|ABD55421.1| DNA ligase NAD-dependent [Jannaschia sp. CCS1]
Length = 752
Score = 84.5 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 26/64 (40%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S A + L K Y+ D P +D YD + A++ FP+L D P
Sbjct: 16 SADAAKTRLAELAKRLSDANTAYHAADAPDLSDADYDALKRENAAIEAAFPDLKRADSPS 75
Query: 115 NTVG 118
+ VG
Sbjct: 76 DQVG 79
>gi|11513386|pdb|1DGS|A Chain A, Crystal Structure Of Nad+-Dependent Dna Ligase From T.
Filiformis
gi|11513387|pdb|1DGS|B Chain B, Crystal Structure Of Nad+-Dependent Dna Ligase From T.
Filiformis
Length = 667
Score = 84.5 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 33/65 (50%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+++ EA + L + +H YY L +P +D YDR+ L L+E+FPE D P
Sbjct: 1 MTREEARRRINELRDLIRYHNYRYYVLADPEISDAEYDRLLRELKELEERFPEFKSPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TEQVG 65
>gi|227889453|ref|ZP_04007258.1| NAD-dependent DNA ligase [Lactobacillus johnsonii ATCC 33200]
gi|227849931|gb|EEJ60017.1| NAD-dependent DNA ligase [Lactobacillus johnsonii ATCC 33200]
Length = 668
Score = 84.5 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
L+ EA +V+ L K YY D P+ D +YD+ + L L+++FP+L D
Sbjct: 4 LTHSEASQKVDELRKKLDKWADDYYAKDAPVVEDAVYDKTYQELVELEQKFPDLVTADSI 63
Query: 114 WNTVG 118
VG
Sbjct: 64 TQRVG 68
>gi|46199040|ref|YP_004707.1| NAD-dependent DNA ligase [Thermus thermophilus HB27]
gi|81405933|sp|Q72JN8|DNLJ_THET2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|46196664|gb|AAS81080.1| NAD-dependent DNA ligase [Thermus thermophilus HB27]
Length = 676
Score = 84.5 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 33/65 (50%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ EA V L + +H YY L +P +D YDR+ L L+E+FPEL D P
Sbjct: 1 MTLEEARKRVNELRDLIRYHNYRYYVLADPEISDAEYDRLLRELKELEERFPELKSPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TEQVG 65
>gi|268319976|ref|YP_003293632.1| DNA ligase, NAD-dependent [Lactobacillus johnsonii FI9785]
gi|262398351|emb|CAX67365.1| DNA ligase, NAD-dependent [Lactobacillus johnsonii FI9785]
Length = 668
Score = 84.5 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
L+ EA +V+ L K YY D P+ D +YD+ + L L+++FP+L D
Sbjct: 4 LTHSEASQKVDELRKKLDKWADDYYAKDAPVVEDAVYDKTYQELVELEQKFPDLVTADSI 63
Query: 114 WNTVG 118
VG
Sbjct: 64 TQRVG 68
>gi|189461356|ref|ZP_03010141.1| hypothetical protein BACCOP_02011 [Bacteroides coprocola DSM 17136]
gi|189431885|gb|EDV00870.1| hypothetical protein BACCOP_02011 [Bacteroides coprocola DSM 17136]
Length = 667
Score = 84.5 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 29/59 (49%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ ++ L + H YY L+ P+ +D +D++ L L+ PE +D + P VG
Sbjct: 4 IERIDQLREELHVHNYNYYVLNAPVISDLEFDKLMRELQDLEALHPEYYDPNSPSVRVG 62
>gi|298528094|ref|ZP_07015498.1| DNA ligase, NAD-dependent [Desulfonatronospira thiodismutans
ASO3-1]
gi|298511746|gb|EFI35648.1| DNA ligase, NAD-dependent [Desulfonatronospira thiodismutans
ASO3-1]
Length = 679
Score = 84.5 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 29/63 (46%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
+ E L + H +YY LD+PL +D YDR+ L L+E+ P L P
Sbjct: 5 QEHIEHRAEELRREINLHNYYYYVLDDPLISDVEYDRMLAELKDLEEKHPGLKHSGSPTM 64
Query: 116 TVG 118
VG
Sbjct: 65 KVG 67
>gi|292657108|ref|YP_003537005.1| DNA ligase, NAD-dependent [Haloferax volcanii DS2]
gi|291370943|gb|ADE03170.1| DNA ligase, NAD-dependent [Haloferax volcanii DS2]
Length = 699
Score = 84.5 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
+ + SLS+ A + L + H YY +PL +D YD + RL AL++ F +
Sbjct: 20 EFEPAESLSREAAEGQAALLREAVREHDHRYYVAADPLVSDAAYDALFSRLVALEDAF-D 78
Query: 107 LFDEDHPWNTVG 118
L + P N VG
Sbjct: 79 LDTTNSPTNRVG 90
>gi|224539983|ref|ZP_03680522.1| hypothetical protein BACCELL_04895 [Bacteroides cellulosilyticus
DSM 14838]
gi|224518409|gb|EEF87514.1| hypothetical protein BACCELL_04895 [Bacteroides cellulosilyticus
DSM 14838]
Length = 694
Score = 84.5 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 27/60 (45%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
A +++ L H YY L+ P +D +D + L ++ + PE DE P VG
Sbjct: 32 AKEKIDQLRAELHRHNYNYYVLNAPEISDKEFDDMMRELQDMEREHPEYQDETSPTMRVG 91
>gi|110669547|ref|YP_659358.1| NAD-dependent DNA ligase LigA [Haloquadratum walsbyi DSM 16790]
gi|109627294|emb|CAJ53784.1| DNA ligase (NAD) [Haloquadratum walsbyi DSM 16790]
Length = 770
Score = 84.5 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 36 PNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSE 95
PN L + + + LS+ A+ + L + H YY +P+ D YD + +
Sbjct: 85 PNNPYLSNIDGDFRPIEQLSEEAAVEQATQLREAIREHDYQYYIRASPIIADRAYDILFD 144
Query: 96 RLDALQEQFPELFDEDHPWNTVG 118
RL AL++ F L E P VG
Sbjct: 145 RLQALEDIF-NLDTEASPTRRVG 166
>gi|218281363|ref|ZP_03487841.1| hypothetical protein EUBIFOR_00406 [Eubacterium biforme DSM 3989]
gi|218217455|gb|EEC90993.1| hypothetical protein EUBIFOR_00406 [Eubacterium biforme DSM 3989]
Length = 667
Score = 84.1 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 33/64 (51%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+S + + L K + YY DNP TD YDR+ + L AL+E++PE++D P
Sbjct: 1 MSMMDEKARILELRKELEKYSIEYYVYDNPSITDQEYDRLMQELMALEEKYPEMYDATSP 60
Query: 114 WNTV 117
+
Sbjct: 61 SQRI 64
>gi|304385588|ref|ZP_07367932.1| NAD-dependent DNA ligase LigA [Pediococcus acidilactici DSM 20284]
gi|304328092|gb|EFL95314.1| NAD-dependent DNA ligase LigA [Pediococcus acidilactici DSM 20284]
Length = 675
Score = 84.1 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 31/74 (41%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
+ K + ++ EA E L + + YY D P D +YD L AL++ F
Sbjct: 1 MSLPKPIEKMNLTEANELAEQLREKLDRWSELYYTKDAPEVEDYVYDENYADLQALEQAF 60
Query: 105 PELFDEDHPWNTVG 118
PE+ D VG
Sbjct: 61 PEIASPDSITQRVG 74
>gi|270290149|ref|ZP_06196375.1| DNA ligase, NAD-dependent [Pediococcus acidilactici 7_4]
gi|270281686|gb|EFA27518.1| DNA ligase, NAD-dependent [Pediococcus acidilactici 7_4]
Length = 675
Score = 84.1 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 31/74 (41%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
+ K + ++ EA E L + + YY D P D +YD L AL++ F
Sbjct: 1 MSLPKPIEKMNLTEANELAEQLREKLDRWSELYYTKDAPEVEDYVYDENYADLQALEQAF 60
Query: 105 PELFDEDHPWNTVG 118
PE+ D VG
Sbjct: 61 PEIASPDSITQRVG 74
>gi|305667253|ref|YP_003863540.1| DNA ligase [Maribacter sp. HTCC2170]
gi|88708187|gb|EAR00425.1| DNA ligase [Maribacter sp. HTCC2170]
Length = 664
Score = 84.1 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 27/60 (45%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++E L H YY LDNP +D +D + L L+ + PE +D P VG
Sbjct: 3 VRQKIEALRAELREHNHNYYVLDNPTISDYDFDMKLKELQELEAKHPEFYDATSPTLRVG 62
>gi|228472685|ref|ZP_04057445.1| DNA ligase, NAD-dependent [Capnocytophaga gingivalis ATCC 33624]
gi|228276098|gb|EEK14854.1| DNA ligase, NAD-dependent [Capnocytophaga gingivalis ATCC 33624]
Length = 666
Score = 84.1 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 30/62 (48%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ ++E L K H YY LD P +D +D+ + L L+ Q+P+ D + P
Sbjct: 2 DSILQQIEALRKELNEHNYNYYVLDTPSISDYEFDQKLKALQDLEAQYPQYKDPNSPTVR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|325297787|ref|YP_004257704.1| DNA ligase [Bacteroides salanitronis DSM 18170]
gi|324317340|gb|ADY35231.1| DNA ligase [Bacteroides salanitronis DSM 18170]
Length = 667
Score = 84.1 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 28/59 (47%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ ++ L + H YY + P+ +D +D + L L+ + PE +D + P VG
Sbjct: 4 IERIDQLREELHLHNYKYYVENAPVISDQEFDHLMRELQDLEARHPEHYDPNSPSVRVG 62
>gi|227509971|ref|ZP_03940020.1| NAD-dependent DNA ligase [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
gi|227190577|gb|EEI70644.1| NAD-dependent DNA ligase [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
Length = 675
Score = 84.1 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 31/67 (46%)
Query: 52 TSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
+++ +A + L + YY D+P D +YD+ ++L L+ FP++ D
Sbjct: 4 EDMTEQQAESAAQELREKLNKWADEYYTYDSPSVEDSVYDQTYQQLVDLETTFPQIVTPD 63
Query: 112 HPWNTVG 118
P VG
Sbjct: 64 SPTQKVG 70
>gi|3800758|gb|AAC68862.1| thermostable DNA ligase [Thermus filiformis]
Length = 667
Score = 84.1 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 33/65 (50%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+++ EA + L + +H YY L +P +D YDR+ L L+E+FPE D P
Sbjct: 1 MTREEARRRINELRDLIRYHNYRYYVLADPEISDAEYDRLLRELKELEERFPEFKSPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TEQVG 65
>gi|306827641|ref|ZP_07460921.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes ATCC 10782]
gi|304430204|gb|EFM33233.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes ATCC 10782]
Length = 652
Score = 84.1 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 28/59 (47%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L + ++ YY D P +D YD++ L L++ +PE +D P VG
Sbjct: 2 KKRIKELTDLLNRYRYDYYTKDAPSVSDSDYDKLYRELVTLEQSYPEYVLQDSPTQQVG 60
>gi|94988258|ref|YP_596359.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS9429]
gi|94992132|ref|YP_600231.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS2096]
gi|122986939|sp|Q1JCM1|DNLJ_STRPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|123080420|sp|Q1JMJ7|DNLJ_STRPC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|94541766|gb|ABF31815.1| NAD-dependent DNA ligase [Streptococcus pyogenes MGAS9429]
gi|94545640|gb|ABF35687.1| NAD-dependent DNA ligase [Streptococcus pyogenes MGAS2096]
Length = 652
Score = 84.1 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 28/59 (47%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L + ++ YY D P +D YD++ L L++ +PE +D P VG
Sbjct: 2 KKRIKELTDLLNRYRYDYYTKDAPSVSDSDYDKLYRELVTLEQSYPEYVLQDSPTQQVG 60
>gi|146277206|ref|YP_001167365.1| DNA ligase, NAD-dependent [Rhodobacter sphaeroides ATCC 17025]
gi|166216230|sp|A4WRP6|DNLJ_RHOS5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|145555447|gb|ABP70060.1| DNA ligase, NAD-dependent [Rhodobacter sphaeroides ATCC 17025]
Length = 704
Score = 84.1 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 35/74 (47%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
+ + V L++ EA E+ +L + Y+ D P +D YD + R A++E+F
Sbjct: 1 MQDERPVDQLTEAEAAAELAHLAEAIAAADTAYHTHDAPRISDADYDALKRRNRAIEERF 60
Query: 105 PELFDEDHPWNTVG 118
P L D P VG
Sbjct: 61 PALRRSDSPSERVG 74
>gi|198274661|ref|ZP_03207193.1| hypothetical protein BACPLE_00817 [Bacteroides plebeius DSM 17135]
gi|198272108|gb|EDY96377.1| hypothetical protein BACPLE_00817 [Bacteroides plebeius DSM 17135]
Length = 666
Score = 84.1 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ ++ L + H YY L+ P +D +DR+ L L+ + PE +DE+ P VG
Sbjct: 4 IERIDQLREELHTHNHNYYILNAPTISDQEFDRLMRELQDLEAKHPEHYDENSPSVRVG 62
>gi|170739961|ref|YP_001768616.1| DNA ligase, NAD-dependent [Methylobacterium sp. 4-46]
gi|254781369|sp|B0UQ51|DNLJ_METS4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|168194235|gb|ACA16182.1| DNA ligase, NAD-dependent [Methylobacterium sp. 4-46]
Length = 827
Score = 84.1 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 35/72 (48%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
+ V ++ EA E L H + Y+ D P+ +D YD + RL+A++E+FP+
Sbjct: 5 TTRPVEEITAEEARAAHEALSAEIAEHDRRYHGEDAPIISDAAYDSLRRRLEAIEERFPD 64
Query: 107 LFDEDHPWNTVG 118
L +VG
Sbjct: 65 LAGTGAASASVG 76
>gi|227832930|ref|YP_002834637.1| DNA ligase [Corynebacterium aurimucosum ATCC 700975]
gi|262182581|ref|ZP_06042002.1| NAD-dependent DNA ligase LigA [Corynebacterium aurimucosum ATCC
700975]
gi|254781299|sp|C3PFU5|DNLJ_CORA7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|227453946|gb|ACP32699.1| DNA ligase [Corynebacterium aurimucosum ATCC 700975]
Length = 674
Score = 84.1 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+ E L + H++ YY + P D +D + +RL AL+ + PEL D P V
Sbjct: 6 DIQREWSELAQEVRKHRELYYNGE-PSIPDADFDELFQRLLALEAEHPELQTPDSPTQQV 64
Query: 118 G 118
G
Sbjct: 65 G 65
>gi|329767007|ref|ZP_08258535.1| DNA ligase [Gemella haemolysans M341]
gi|328837732|gb|EGF87357.1| DNA ligase [Gemella haemolysans M341]
Length = 663
Score = 84.1 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 31/62 (50%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ ++ LV + + YY DNP +D YD + ++L+ L+E PE E+ P
Sbjct: 2 KQVQEKISKLVSLLNKYSYDYYVEDNPQISDTEYDTLYKQLEKLEENHPEYILENSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|300858287|ref|YP_003783270.1| DNA ligase [Corynebacterium pseudotuberculosis FRC41]
gi|300685741|gb|ADK28663.1| DNA ligase [Corynebacterium pseudotuberculosis FRC41]
gi|302206007|gb|ADL10349.1| NAD-dependent DNA ligase LigA [Corynebacterium pseudotuberculosis
C231]
gi|302330560|gb|ADL20754.1| NAD-dependent DNA ligase LigA [Corynebacterium pseudotuberculosis
1002]
gi|308276242|gb|ADO26141.1| NAD-dependent DNA ligase LigA [Corynebacterium pseudotuberculosis
I19]
Length = 694
Score = 84.1 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 41 LESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDAL 100
L+ + + + S E + + L + +H+ YY D P +D +D + L L
Sbjct: 6 LKLNTNDKLDIVTDSNIELRRQWDELAEQVRYHRDAYY-NDTPEISDQDFDALFRTLQKL 64
Query: 101 QEQFPELFDEDHPWNTVG 118
+E+ PEL D P VG
Sbjct: 65 EEEHPELAVPDSPTLEVG 82
>gi|303258051|ref|ZP_07344059.1| DNA ligase, NAD-dependent [Burkholderiales bacterium 1_1_47]
gi|331000674|ref|ZP_08324326.1| DNA ligase [Parasutterella excrementihominis YIT 11859]
gi|302859070|gb|EFL82153.1| DNA ligase, NAD-dependent [Burkholderiales bacterium 1_1_47]
gi|329570827|gb|EGG52542.1| DNA ligase [Parasutterella excrementihominis YIT 11859]
Length = 684
Score = 84.1 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 29/62 (46%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ +E L + H K YY + P +D +YD + + L L++++P+ P
Sbjct: 10 EAVKLRMEKLAEELEKHNKAYYIDNAPTVSDEIYDSLFQELARLEKEYPQFKSPVSPTER 69
Query: 117 VG 118
VG
Sbjct: 70 VG 71
>gi|21910027|ref|NP_664295.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS315]
gi|28896275|ref|NP_802625.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes SSI-1]
gi|81759290|sp|Q8K831|DNLJ_STRP3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|21904217|gb|AAM79098.1| putative DNA ligase [Streptococcus pyogenes MGAS315]
gi|28811526|dbj|BAC64458.1| putative DNA ligase [Streptococcus pyogenes SSI-1]
Length = 652
Score = 84.1 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 28/59 (47%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L + ++ YY D P +D YD++ L L++ +PE +D P VG
Sbjct: 2 KKRIKELTDLLNRYRYDYYTKDAPSVSDSDYDKLYRELVTLEQSYPEYVLQDSPTQQVG 60
>gi|166215834|sp|Q18E49|DNLJ_HALWD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
Length = 736
Score = 84.1 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 36 PNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSE 95
PN L + + + LS+ A+ + L + H YY +P+ D YD + +
Sbjct: 51 PNNPYLSNIDGDFRPIEQLSEEAAVEQATQLREAIREHDYQYYIRASPIIADRAYDILFD 110
Query: 96 RLDALQEQFPELFDEDHPWNTVG 118
RL AL++ F L E P VG
Sbjct: 111 RLQALEDIF-NLDTEASPTRRVG 132
>gi|94994051|ref|YP_602149.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS10750]
gi|123257616|sp|Q1J7G9|DNLJ_STRPF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|94547559|gb|ABF37605.1| NAD-dependent DNA ligase [Streptococcus pyogenes MGAS10750]
Length = 652
Score = 83.7 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 28/59 (47%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L + ++ YY D P +D YD++ L L++ +PE +D P VG
Sbjct: 2 KKRIKELTDLLNRYRYDYYTKDAPSVSDSDYDKLYRELVTLEQSYPEYVLQDSPTQQVG 60
>gi|71903217|ref|YP_280020.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS6180]
gi|123761437|sp|Q48UE1|DNLJ_STRPM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|71802312|gb|AAX71665.1| NAD-dependent DNA ligase [Streptococcus pyogenes MGAS6180]
Length = 652
Score = 83.7 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 28/59 (47%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L + ++ YY D P +D YD++ L L++ +PE +D P VG
Sbjct: 2 KKRIKELTDLLNRYRYDYYTKDAPSVSDSDYDKLYRELVTLEQSYPEYVLQDSPTQQVG 60
>gi|260102794|ref|ZP_05753031.1| DNA ligase [Lactobacillus helveticus DSM 20075]
gi|260083398|gb|EEW67518.1| DNA ligase [Lactobacillus helveticus DSM 20075]
Length = 689
Score = 83.7 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 34/82 (41%)
Query: 37 NKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSER 96
NK + ++ K+ ++ EA E L YY D P D +YD+ R
Sbjct: 8 NKDKNKKIFNQEVKMAKITLDEAKKEAASLRTKLDEWADAYYSKDAPEVEDNVYDQSYNR 67
Query: 97 LDALQEQFPELFDEDHPWNTVG 118
L L++ FPE+ D VG
Sbjct: 68 LLELEKAFPEIVTPDSITQRVG 89
>gi|50913936|ref|YP_059908.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS10394]
gi|81372213|sp|Q5XCY8|DNLJ_STRP6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|50903010|gb|AAT86725.1| NAD-dependent DNA ligase [Streptococcus pyogenes MGAS10394]
Length = 652
Score = 83.7 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 28/59 (47%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L + ++ YY D P +D YD++ L L++ +PE +D P VG
Sbjct: 2 KKRIKELTDLLNRYRYDYYTKDAPSVSDSDYDKLYRELVTLEQSYPEYVLQDSPTQQVG 60
>gi|323467080|gb|ADX70767.1| DNA ligase [Lactobacillus helveticus H10]
Length = 689
Score = 83.7 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 34/82 (41%)
Query: 37 NKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSER 96
NK + ++ K+ ++ EA E L YY D P D +YD+ R
Sbjct: 8 NKDKNKKIFNQEVKMAKITLDEAKKEAASLRTKLDEWADAYYSKDAPEVEDNVYDQSYNR 67
Query: 97 LDALQEQFPELFDEDHPWNTVG 118
L L++ FPE+ D VG
Sbjct: 68 LLELEKAFPEIVTPDSITQRVG 89
>gi|19745839|ref|NP_606975.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS8232]
gi|94990137|ref|YP_598237.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS10270]
gi|139474058|ref|YP_001128774.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes str.
Manfredo]
gi|81632934|sp|Q8P1L1|DNLJ_STRP8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|123258039|sp|Q1JHP3|DNLJ_STRPD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|166216247|sp|A2RFD0|DNLJ_STRPG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|19747987|gb|AAL97474.1| putative DNA ligase [Streptococcus pyogenes MGAS8232]
gi|94543645|gb|ABF33693.1| NAD-dependent DNA ligase [Streptococcus pyogenes MGAS10270]
gi|134272305|emb|CAM30559.1| DNA ligase [Streptococcus pyogenes str. Manfredo]
Length = 652
Score = 83.7 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 28/59 (47%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L + ++ YY D P +D YD++ L L++ +PE +D P VG
Sbjct: 2 KKRIKELTDLLNRYRYDYYTKDAPSVSDSDYDKLYRELVTLEQSYPEYVLQDSPTQQVG 60
>gi|7674019|sp|Q9ZHI0|DNLJ_THEFI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]; AltName: Full=Tfi DNA ligase
Length = 670
Score = 83.7 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 33/65 (50%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+++ EA + L + +H YY L +P +D YDR+ L L+E+FPE D P
Sbjct: 1 MTREEARRRINELRDLIRYHNYRYYVLADPEISDAEYDRLLRELKELEERFPEFKSPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TEQVG 65
>gi|209559128|ref|YP_002285600.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes NZ131]
gi|254781429|sp|B5XKP3|DNLJ_STRPZ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|209540329|gb|ACI60905.1| DNA ligase [Streptococcus pyogenes NZ131]
Length = 652
Score = 83.7 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 28/59 (47%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L + ++ YY D P +D YD++ L L++ +PE +D P VG
Sbjct: 2 KKRIKELTDLLNRYRYDYYTKDAPSVSDSDYDKLYRELVTLEQSYPEYVLQDSPTQQVG 60
>gi|134102614|ref|YP_001108275.1| NAD-dependent DNA ligase LigA [Saccharopolyspora erythraea NRRL
2338]
gi|291004701|ref|ZP_06562674.1| NAD-dependent DNA ligase LigA [Saccharopolyspora erythraea NRRL
2338]
gi|166216238|sp|A4FMS5|DNLJ_SACEN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|133915237|emb|CAM05350.1| DNA ligase, NAD-dependent [Saccharopolyspora erythraea NRRL 2338]
Length = 727
Score = 83.7 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 27/60 (45%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV+ HQ YY LD+P +DG +D + L L+ P L D D P VG
Sbjct: 43 VRERYADLVEQVRAHQFRYYVLDSPTISDGEFDELFTELQTLESDHPALRDPDSPTQVVG 102
>gi|116071920|ref|ZP_01469188.1| DNA ligase [Synechococcus sp. BL107]
gi|116065543|gb|EAU71301.1| DNA ligase [Synechococcus sp. BL107]
Length = 682
Score = 83.7 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
+ E E+ L+ A H YY LD P D +YDR+ L L++ P L D P
Sbjct: 3 DQSERASELRNLLNTAAH---AYYVLDTPTMEDAVYDRLYRELLELEQTTPSLKTADSPT 59
Query: 115 NTVG 118
VG
Sbjct: 60 QRVG 63
>gi|15674800|ref|NP_268974.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes M1 GAS]
gi|71910386|ref|YP_281936.1| NAD-dependent DNA ligase LigA [Streptococcus pyogenes MGAS5005]
gi|81533831|sp|Q9A0J5|DNLJ_STRP1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|13621930|gb|AAK33695.1| putative DNA ligase [Streptococcus pyogenes M1 GAS]
gi|71853168|gb|AAZ51191.1| NAD-dependent DNA ligase [Streptococcus pyogenes MGAS5005]
Length = 652
Score = 83.7 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 28/59 (47%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L + ++ YY D P +D YD++ L L++ +PE +D P VG
Sbjct: 2 KKRIKELTDLLNRYRYDYYTKDAPSVSDSDYDKLYRELVTLEQSYPEYVLQDSPTQQVG 60
>gi|290580089|ref|YP_003484481.1| DNA ligase [Streptococcus mutans NN2025]
gi|254996988|dbj|BAH87589.1| DNA ligase [Streptococcus mutans NN2025]
Length = 652
Score = 83.7 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 31/59 (52%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV++ + + YY DNP +D YD++ L L+++FPE + P + VG
Sbjct: 2 KERMNELVQLLNQYAREYYTKDNPSVSDAEYDKLYRELVELEKEFPEDILSNSPTHRVG 60
>gi|55981066|ref|YP_144363.1| DNA ligase [NAD+] [Thermus thermophilus HB8]
gi|118780|sp|P26996|DNLJ_THET8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]; AltName: Full=Tth DNA ligase
gi|94721|pir||A40363 DNA ligase (NAD) (EC 6.5.1.2) - Thermus aquaticus
gi|155088|gb|AAA27486.1| DNA ligase [Thermus thermophilus]
gi|155090|gb|AAA27487.1| DNA ligase [Thermus thermophilus]
gi|55772479|dbj|BAD70920.1| DNA ligase [NAD+] [Thermus thermophilus HB8]
Length = 676
Score = 83.7 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 33/65 (50%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ EA V L + +H YY L +P +D YDR+ L L+E+FPEL D P
Sbjct: 1 MTLEEARKRVNELRDLIRYHNYRYYVLADPEISDAEYDRLLRELKELEERFPELKSPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TLQVG 65
>gi|325956253|ref|YP_004286863.1| DNA ligase [Lactobacillus acidophilus 30SC]
gi|325332818|gb|ADZ06726.1| DNA ligase [Lactobacillus acidophilus 30SC]
Length = 667
Score = 83.7 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 29/68 (42%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
+ ++ EA E L YY D P D +YD+ RL L+++FPE+
Sbjct: 1 MAEITLDEAKKEAASLRTQLNEWADAYYSKDAPEVEDNVYDQSYNRLLELEKEFPEIVTP 60
Query: 111 DHPWNTVG 118
D VG
Sbjct: 61 DSITQRVG 68
>gi|258648381|ref|ZP_05735850.1| DNA ligase, NAD-dependent [Prevotella tannerae ATCC 51259]
gi|260851551|gb|EEX71420.1| DNA ligase, NAD-dependent [Prevotella tannerae ATCC 51259]
Length = 677
Score = 83.7 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 28/59 (47%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++L K H YY +NP D +D + + L L+++ PE D + P VG
Sbjct: 8 KDRIDFLRKELHRHNYNYYVKNNPEILDADFDALMQELADLEQKHPEWADNNSPTVRVG 66
>gi|170781460|ref|YP_001709792.1| NAD-dependent DNA ligase LigA [Clavibacter michiganensis subsp.
sepedonicus]
gi|190359244|sp|B0RGA7|DNLJ_CLAMS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|169156028|emb|CAQ01163.1| DNA ligase [Clavibacter michiganensis subsp. sepedonicus]
Length = 847
Score = 83.7 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Query: 46 DKAKKVTSLSKGEAM-IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
D A T+ + EA V+ L H+ YY +D YD + L A+++
Sbjct: 12 DAAVPATTPADLEAASARVDELRAEIERHRDAYYGETGGTVSDAEYDALERELRAIEDAH 71
Query: 105 PELFDEDHPWNTVG 118
P L +D P TVG
Sbjct: 72 PTLRSQDSPTQTVG 85
>gi|226356158|ref|YP_002785898.1| DNA ligase (NAD(+)) [Deinococcus deserti VCD115]
gi|254778151|sp|C1CVC7|DNLJ2_DEIDV RecName: Full=DNA ligase 2; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] 2
gi|226318148|gb|ACO46144.1| putative DNA ligase (NAD(+)) [Deinococcus deserti VCD115]
Length = 686
Score = 83.7 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L H + YY D P +D YD ++ L ++ + PE ++D P T+G
Sbjct: 16 LRAEVARHNRAYYEQDAPEISDDEYDALARALRDMEARHPEWVEDDSPVQTIG 68
>gi|87123447|ref|ZP_01079298.1| BRCT domain:NAD-dependent DNA ligase N-terminus [Synechococcus sp.
RS9917]
gi|86169167|gb|EAQ70423.1| BRCT domain:NAD-dependent DNA ligase N-terminus [Synechococcus sp.
RS9917]
Length = 694
Score = 83.7 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 23/58 (39%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L + YY LD P D +YDR+ L L++ P L D P VG
Sbjct: 7 ERARELRTLLNRAAHAYYVLDAPEMEDPVYDRLYRELVELEQADPSLCSPDSPTQRVG 64
>gi|313890529|ref|ZP_07824157.1| DNA ligase (NAD+) [Streptococcus pseudoporcinus SPIN 20026]
gi|313121046|gb|EFR44157.1| DNA ligase (NAD+) [Streptococcus pseudoporcinus SPIN 20026]
Length = 652
Score = 83.7 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L + +++ YY DNP +D YD++ L AL+ ++PEL +D P VG
Sbjct: 2 EKRIIELTNLLNQYRQEYYTNDNPTVSDQEYDKLYHELLALETEYPELIQKDSPTQGVG 60
>gi|315037778|ref|YP_004031346.1| DNA ligase [Lactobacillus amylovorus GRL 1112]
gi|312275911|gb|ADQ58551.1| DNA ligase [Lactobacillus amylovorus GRL 1112]
Length = 667
Score = 83.7 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 29/68 (42%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
+ ++ EA E L YY D P D +YD+ RL L+++FPE+
Sbjct: 1 MAEITLDEAKKEAASLRTQLNEWADAYYSKDAPEVEDNVYDQSYNRLLELEKEFPEIVTP 60
Query: 111 DHPWNTVG 118
D VG
Sbjct: 61 DSITQRVG 68
>gi|313904335|ref|ZP_07837713.1| DNA ligase, NAD-dependent [Eubacterium cellulosolvens 6]
gi|313470885|gb|EFR66209.1| DNA ligase, NAD-dependent [Eubacterium cellulosolvens 6]
Length = 670
Score = 83.7 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 26/58 (44%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E L + +H YY LD P +D YD++ L +++ P+ D P +G
Sbjct: 4 EEYNRLKEKIDYHMDRYYNLDEPEISDYEYDQLMIALKKAEKEHPDWISPDSPSQKIG 61
>gi|120434999|ref|YP_860685.1| DNA ligase [Gramella forsetii KT0803]
gi|166215777|sp|A0LZ23|DNLJ_GRAFK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|117577149|emb|CAL65618.1| DNA ligase [Gramella forsetii KT0803]
Length = 664
Score = 83.7 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 30/61 (49%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E ++ L + H YY LD P +D +D + L L+E++PE D++ P V
Sbjct: 2 EVEKKIRGLREELQQHNYNYYVLDKPQISDYEFDIKLKELQELEEKYPEFEDDNSPTRRV 61
Query: 118 G 118
G
Sbjct: 62 G 62
>gi|159904348|ref|YP_001551692.1| NAD-dependent DNA ligase LigA [Prochlorococcus marinus str. MIT
9211]
gi|254781392|sp|A9BDC5|DNLJ_PROM4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|159889524|gb|ABX09738.1| NAD-dependent DNA ligase (contains BRCT domain type II)
[Prochlorococcus marinus str. MIT 9211]
Length = 697
Score = 83.7 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 25/54 (46%)
Query: 65 YLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L K+ YY LD PL D +YDR+ L +++ P L D P +G
Sbjct: 14 ELRKLLNRANHAYYVLDTPLMEDTVYDRLYRELLNIEKNHPSLITADSPSQRLG 67
>gi|76801093|ref|YP_326101.1| NAD-dependent DNA ligase LigA [Natronomonas pharaonis DSM 2160]
gi|121729348|sp|Q3ITK1|DNLJ_NATPD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|76556958|emb|CAI48532.1| DNA ligase (NAD) [Natronomonas pharaonis DSM 2160]
Length = 691
Score = 83.7 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
+ V L A +VE L + H YY+L +P+ +D YD++ ERL+ L+ +F +
Sbjct: 16 DFEPVDELDAASATRQVETLREAIRFHDYRYYQLADPVISDRAYDQLFERLERLESKF-D 74
Query: 107 LFDEDHPWNTVG 118
P VG
Sbjct: 75 RSSATSPTQRVG 86
>gi|298372045|ref|ZP_06982035.1| DNA ligase, NAD-dependent [Bacteroidetes oral taxon 274 str. F0058]
gi|298274949|gb|EFI16500.1| DNA ligase, NAD-dependent [Bacteroidetes oral taxon 274 str. F0058]
Length = 670
Score = 83.7 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 35/65 (53%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ + ++ L K H YY +NP +D +D ++L+++++ +PE FD++ P
Sbjct: 1 MANTDIEQQIIKLRKEIEAHNHAYYVDNNPTISDFEFDMRLKQLESMEKAYPEYFDKNSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|300813135|ref|ZP_07093512.1| DNA ligase (NAD(+)) [Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
gi|300495889|gb|EFK31034.1| DNA ligase (NAD(+)) [Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
Length = 671
Score = 83.7 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 28/64 (43%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S EA EV L K YY D P+ D +YD+ RL L+ +PEL D
Sbjct: 4 SLEEAKQEVRQLRAQLDQWAKAYYEQDAPVVEDHVYDKKYARLLELEAAYPELKSADSIT 63
Query: 115 NTVG 118
VG
Sbjct: 64 QRVG 67
>gi|238854176|ref|ZP_04644523.1| DNA ligase, NAD-dependent [Lactobacillus gasseri 202-4]
gi|238833252|gb|EEQ25542.1| DNA ligase, NAD-dependent [Lactobacillus gasseri 202-4]
Length = 668
Score = 83.7 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 33/65 (50%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
L+ +A +V+ L K + YY D P+ D +YD+ + L L++QFP+L D
Sbjct: 4 LTHNQASQKVDELRKKLDEWAEDYYAKDAPVVEDAVYDKAYQELVELEKQFPDLVTSDSI 63
Query: 114 WNTVG 118
VG
Sbjct: 64 TQRVG 68
>gi|154492286|ref|ZP_02031912.1| hypothetical protein PARMER_01920 [Parabacteroides merdae ATCC
43184]
gi|154087511|gb|EDN86556.1| hypothetical protein PARMER_01920 [Parabacteroides merdae ATCC
43184]
Length = 666
Score = 83.4 bits (205), Expect = 8e-15, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 26/60 (43%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L + H YY L P +D +D + + L L+E PE D P VG
Sbjct: 3 VKDKIKALREALEQHNYNYYVLSAPTISDREFDEMMKELQVLEESHPEYADPHSPTQRVG 62
>gi|116630136|ref|YP_815308.1| NAD-dependent DNA ligase [Lactobacillus gasseri ATCC 33323]
gi|122272927|sp|Q041K2|DNLJ_LACGA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|116095718|gb|ABJ60870.1| NAD-dependent DNA ligase [Lactobacillus gasseri ATCC 33323]
Length = 668
Score = 83.4 bits (205), Expect = 9e-15, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 33/65 (50%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
L+ +A +V+ L K + YY D P+ D +YD+ + L L++QFP+L D
Sbjct: 4 LTHNQASQKVDELRKKLDEWAEDYYAKDAPVVEDAVYDKAYQELVELEKQFPDLVTSDSI 63
Query: 114 WNTVG 118
VG
Sbjct: 64 TQRVG 68
>gi|297717812|gb|ADI50049.1| DNA ligase [Candidatus Odyssella thessalonicensis L13]
Length = 676
Score = 83.4 bits (205), Expect = 9e-15, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L K +H + Y++ D P +D YD + R ++ FP+L ED P VG
Sbjct: 1 LAKTIAYHDELYFQKDMPQISDAAYDALVVRNRQIENLFPDLRREDSPSKRVG 53
>gi|300781381|ref|ZP_07091235.1| NAD-dependent DNA ligase LigA [Corynebacterium genitalium ATCC
33030]
gi|300533088|gb|EFK54149.1| NAD-dependent DNA ligase LigA [Corynebacterium genitalium ATCC
33030]
Length = 674
Score = 83.4 bits (205), Expect = 9e-15, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 54 LSKGEA----MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
+++ + + + L K H+ YY D P+ TD +D + RL L+E PEL
Sbjct: 1 MTEAQVSEDLLRQWNELAKEVRRHRDLYYNGD-PVITDAEFDEMFRRLQQLEEDHPELAV 59
Query: 110 EDHPWNTVG 118
D P VG
Sbjct: 60 PDSPTKEVG 68
>gi|260436246|ref|ZP_05790216.1| DNA ligase, NAD-dependent [Synechococcus sp. WH 8109]
gi|260414120|gb|EEX07416.1| DNA ligase, NAD-dependent [Synechococcus sp. WH 8109]
Length = 680
Score = 83.4 bits (205), Expect = 9e-15, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 24/58 (41%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L + YY LD P+ D +YDR+ L L++ P L D P VG
Sbjct: 6 ERAAELRHLLNRAGHAYYVLDAPVMEDAVYDRLYRELLELEQNDPGLQRPDSPTQRVG 63
>gi|254420802|ref|ZP_05034526.1| DNA ligase, NAD-dependent [Brevundimonas sp. BAL3]
gi|196186979|gb|EDX81955.1| DNA ligase, NAD-dependent [Brevundimonas sp. BAL3]
Length = 776
Score = 83.4 bits (205), Expect = 9e-15, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Query: 41 LESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDAL 100
+ S + V L+ A E+ +L H Y P +D YD + R A+
Sbjct: 1 MSSAIPPFPPVEDLTAETAAEELAWLAAEMARHDALYNEA-TPEISDADYDALRARNLAI 59
Query: 101 QEQFPELFDEDHPWNTVG 118
+ FP+L D P + VG
Sbjct: 60 ETAFPDLVRPDSPSHKVG 77
>gi|327183069|gb|AEA31516.1| DNA ligase [Lactobacillus amylovorus GRL 1118]
Length = 667
Score = 83.4 bits (205), Expect = 9e-15, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 29/68 (42%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
+ ++ EA E L YY D P D +YD+ RL L+++FPE+
Sbjct: 1 MAEITLDEAKKEAASLRTQLNEWADAYYSKDAPEVEDNVYDQSYNRLLELEKEFPEIVTP 60
Query: 111 DHPWNTVG 118
D VG
Sbjct: 61 DSITQRVG 68
>gi|187251632|ref|YP_001876114.1| DNA ligase, NAD-dependent [Elusimicrobium minutum Pei191]
gi|254781329|sp|B2KE31|DNLJ_ELUMP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|186971792|gb|ACC98777.1| DNA ligase, NAD-dependent [Elusimicrobium minutum Pei191]
Length = 656
Score = 83.4 bits (205), Expect = 9e-15, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ E+E L +H YY LDN +D YD + RL L+ P+ D P
Sbjct: 2 DKIKKEIEDLRSKINYHNNLYYNLDNAEISDAEYDGLYARLKFLEAMNPDYADAASPTQK 61
Query: 117 VG 118
+G
Sbjct: 62 IG 63
>gi|154498024|ref|ZP_02036402.1| hypothetical protein BACCAP_02004 [Bacteroides capillosus ATCC
29799]
gi|150273014|gb|EDN00171.1| hypothetical protein BACCAP_02004 [Bacteroides capillosus ATCC
29799]
Length = 664
Score = 83.4 bits (205), Expect = 9e-15, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 27/59 (45%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ E+ L YY LDNP +D +D RL+ L++ P+ ED P VG
Sbjct: 4 IQEIALLRAELNKASYEYYVLDNPTMSDYDFDHKLRRLEELEQAHPDQITEDSPTRRVG 62
>gi|254445017|ref|ZP_05058493.1| DNA ligase, NAD-dependent [Verrucomicrobiae bacterium DG1235]
gi|198259325|gb|EDY83633.1| DNA ligase, NAD-dependent [Verrucomicrobiae bacterium DG1235]
Length = 668
Score = 83.4 bits (205), Expect = 9e-15, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 28/65 (43%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK + +E L H + YYR P +D YD + L L+ PEL E P
Sbjct: 1 MSKASDLKRIEQLRAEIRRHDELYYRNAEPEISDFDYDGLKRELADLEAANPELPMEASP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQAVG 65
>gi|47169437|pdb|1V9P|A Chain A, Crystal Structure Of Nad+-Dependent Dna Ligase
gi|47169438|pdb|1V9P|B Chain B, Crystal Structure Of Nad+-Dependent Dna Ligase
Length = 584
Score = 83.4 bits (205), Expect = 9e-15, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 33/65 (50%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+++ EA + L + +H YY L +P +D YDR+ L L+E+FPE D P
Sbjct: 1 MTREEARRRINELRDLIRYHNYRYYVLADPEISDAEYDRLLRELKELEERFPEFKSPDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TEQVG 65
>gi|117926963|ref|YP_867580.1| Fis family transcriptional regulator [Magnetococcus sp. MC-1]
gi|166215818|sp|A0LDY1|DNLJ_MAGSM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|117610719|gb|ABK46174.1| transcriptional regulator, Fis family [Magnetococcus sp. MC-1]
Length = 768
Score = 83.4 bits (205), Expect = 9e-15, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 27/60 (45%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L K H+ Y+ LD L +D YDR+ L +L+ P L D P + VG
Sbjct: 2 SASRAAELRKRLNHYAHSYHTLDTSLVSDAEYDRLFRELQSLEAADPTLISADSPTHRVG 61
>gi|319902123|ref|YP_004161851.1| DNA ligase, NAD-dependent [Bacteroides helcogenes P 36-108]
gi|319417154|gb|ADV44265.1| DNA ligase, NAD-dependent [Bacteroides helcogenes P 36-108]
Length = 665
Score = 83.4 bits (205), Expect = 9e-15, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 28/60 (46%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
A +++ L H YY L+ P +D +D + L L++++PE D P VG
Sbjct: 3 AKEKIDQLRADLHRHNYNYYVLNAPEISDKEFDSMMRDLQNLEKEYPEYQDNSSPTMRVG 62
>gi|282851211|ref|ZP_06260576.1| DNA ligase (NAD(+)) [Lactobacillus gasseri 224-1]
gi|282557179|gb|EFB62776.1| DNA ligase (NAD(+)) [Lactobacillus gasseri 224-1]
Length = 668
Score = 83.4 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 33/65 (50%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
L+ +A +V+ L K + YY D P+ D +YD+ + L L++QFP+L D
Sbjct: 4 LTHNQASQKVDELRKKLDEWAEDYYAKDAPVVEDAVYDKAYQELVELEKQFPDLVTSDSI 63
Query: 114 WNTVG 118
VG
Sbjct: 64 TQRVG 68
>gi|329667842|gb|AEB93790.1| NAD-dependent DNA ligase [Lactobacillus johnsonii DPC 6026]
Length = 668
Score = 83.4 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 32/65 (49%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
L+ EA +V+ L K YY D P+ D +YD+ + L L+EQFP+L +
Sbjct: 4 LTHNEASQKVDELRKKLDKWADDYYAKDAPVVEDAVYDKTYQELVELEEQFPDLVTANSI 63
Query: 114 WNTVG 118
VG
Sbjct: 64 TQRVG 68
>gi|29346304|ref|NP_809807.1| DNA ligase [Bacteroides thetaiotaomicron VPI-5482]
gi|253568276|ref|ZP_04845687.1| DNA ligase [Bacteroides sp. 1_1_6]
gi|81445157|sp|Q8A9C1|DNLJ_BACTN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|29338199|gb|AAO76001.1| DNA ligase [Bacteroides thetaiotaomicron VPI-5482]
gi|251842349|gb|EES70429.1| DNA ligase [Bacteroides sp. 1_1_6]
Length = 666
Score = 83.4 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 26/61 (42%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+ ++E L H YY L+ P +D +D L L+ PE DE+ P V
Sbjct: 2 DIKEKIEELRAELHRHNYNYYVLNAPEISDKEFDDKMRELQDLELAHPEYKDENSPTMRV 61
Query: 118 G 118
G
Sbjct: 62 G 62
>gi|326334401|ref|ZP_08200613.1| NAD-dependent DNA ligase LigA [Capnocytophaga sp. oral taxon 338
str. F0234]
gi|325693368|gb|EGD35295.1| NAD-dependent DNA ligase LigA [Capnocytophaga sp. oral taxon 338
str. F0234]
Length = 670
Score = 83.4 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ ++E L H YY LD+P +D +D+ + L L+ Q+P+ D + P
Sbjct: 3 DSVLQQIETLRTELNEHNYNYYVLDSPTISDYEFDQKLKHLQELEHQYPQYKDPNSPTVR 62
Query: 117 VG 118
VG
Sbjct: 63 VG 64
>gi|239995022|ref|ZP_04715546.1| NAD-dependent DNA ligase [Alteromonas macleodii ATCC 27126]
Length = 70
Score = 83.4 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 33/64 (51%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S +A ++E L + YY +D+P D +YDR + L AL++Q+P L + P
Sbjct: 4 SLEQAKQQIETLRNTLNEYNYQYYVMDDPSVPDAVYDRDMQALIALEKQYPTLQSPNSPS 63
Query: 115 NTVG 118
VG
Sbjct: 64 QKVG 67
>gi|33866919|ref|NP_898478.1| NAD-dependent DNA ligase LigA [Synechococcus sp. WH 8102]
gi|81573701|sp|Q7U3P1|DNLJ_SYNPX RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|33639520|emb|CAE08904.1| Putative DNA ligase [Synechococcus sp. WH 8102]
Length = 679
Score = 83.4 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 25/62 (40%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
E L + YY LD P+ D LYDR+ L L++ P L D P
Sbjct: 2 AEQQQRAAELRSLLNRAAHAYYVLDAPVMEDTLYDRLYRELQQLEQADPSLLSADSPTQR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|330837729|ref|YP_004412370.1| DNA ligase [Spirochaeta coccoides DSM 17374]
gi|329749632|gb|AEC02988.1| DNA ligase [Spirochaeta coccoides DSM 17374]
Length = 716
Score = 83.4 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 32/64 (50%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
++ A+ + L +I L Q YY L P +D YD + + L AL+ P++ + D P
Sbjct: 3 TQETAVRRMAELSRILLDAQHEYYVLGRPSMSDKEYDTLMDELAALEAAHPDVKEADSPT 62
Query: 115 NTVG 118
VG
Sbjct: 63 QRVG 66
>gi|308176651|ref|YP_003916057.1| DNA ligase [Arthrobacter arilaitensis Re117]
gi|307744114|emb|CBT75086.1| DNA ligase [Arthrobacter arilaitensis Re117]
Length = 767
Score = 83.4 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 46 DKAKKVTSLSKGEA-MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
D A T+ EA + LV+ H+ YY+ D PL +D YD + L L+ +
Sbjct: 14 DVAPVETTNVPPEADKTRYDQLVEQIRAHRDAYYQNDAPLVSDVEYDALFHELQLLEATY 73
Query: 105 PELFDEDHPWNTVG 118
P L +D P VG
Sbjct: 74 PILAGQDSPTQEVG 87
>gi|255324552|ref|ZP_05365669.1| DNA ligase, NAD-dependent [Corynebacterium tuberculostearicum
SK141]
gi|255298458|gb|EET77758.1| DNA ligase, NAD-dependent [Corynebacterium tuberculostearicum
SK141]
Length = 689
Score = 83.4 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E L + H+ YY + P D +D + +RL AL+E+ PEL D P VG
Sbjct: 13 EWNDLAQEVRRHRNLYYNGE-PAIPDADFDALFQRLLALEEEHPELAVPDSPTQQVG 68
>gi|298385661|ref|ZP_06995219.1| DNA ligase, NAD-dependent [Bacteroides sp. 1_1_14]
gi|298261802|gb|EFI04668.1| DNA ligase, NAD-dependent [Bacteroides sp. 1_1_14]
Length = 666
Score = 83.4 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 26/61 (42%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+ ++E L H YY L+ P +D +D L L+ PE DE+ P V
Sbjct: 2 DIKEKIEELRAELHRHNYNYYVLNAPEISDKEFDDKMRELQDLELAHPEYKDENSPTMRV 61
Query: 118 G 118
G
Sbjct: 62 G 62
>gi|188584367|ref|YP_001927812.1| DNA ligase, NAD-dependent [Methylobacterium populi BJ001]
gi|254781367|sp|B1Z9P1|DNLJ_METPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|179347865|gb|ACB83277.1| DNA ligase, NAD-dependent [Methylobacterium populi BJ001]
Length = 814
Score = 83.4 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 28/60 (46%)
Query: 48 AKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
+ V SLS+ A L + YY D P TD YD + + L+A++ +FP L
Sbjct: 7 SAAVESLSEDAAQARHAELSRAIERANHLYYNEDAPELTDAEYDALRQELEAIEARFPAL 66
>gi|306835907|ref|ZP_07468900.1| NAD-dependent DNA ligase LigA [Corynebacterium accolens ATCC 49726]
gi|304568181|gb|EFM43753.1| NAD-dependent DNA ligase LigA [Corynebacterium accolens ATCC 49726]
Length = 689
Score = 83.4 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
+ + E L + H+ YY + P D +D + +RL L++Q PEL D P
Sbjct: 6 NPADVQREWNDLAQEVRRHRNLYYNGE-PAIPDADFDALFQRLMDLEKQHPELAVPDSPT 64
Query: 115 NTVG 118
VG
Sbjct: 65 QQVG 68
>gi|300361107|ref|ZP_07057284.1| NAD-dependent DNA ligase LigA [Lactobacillus gasseri JV-V03]
gi|300353726|gb|EFJ69597.1| NAD-dependent DNA ligase LigA [Lactobacillus gasseri JV-V03]
Length = 668
Score = 83.4 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 33/65 (50%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
L+ +A +V+ L K + YY D P+ D +YD+ + L L+++FP+L D
Sbjct: 4 LTHNQASQKVDELRKKLDEWAEDYYAKDAPIVEDAVYDKAYQELVELEKRFPDLVTSDSI 63
Query: 114 WNTVG 118
VG
Sbjct: 64 TQRVG 68
>gi|104773603|ref|YP_618583.1| NAD-dependent DNA ligase [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|122984006|sp|Q1GBF7|DNLJ_LACDA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|103422684|emb|CAI97297.1| NAD-dependent DNA ligase [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
Length = 671
Score = 83.0 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 27/64 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S EA EV L K YY D P+ D +YD RL L+ +PEL D
Sbjct: 4 SLEEAKQEVRQLRAQLDQWAKAYYEQDAPVVEDHVYDEKYARLLELEAAYPELKSADSIT 63
Query: 115 NTVG 118
VG
Sbjct: 64 QRVG 67
>gi|289422752|ref|ZP_06424592.1| DNA ligase (NAD(+)) [Peptostreptococcus anaerobius 653-L]
gi|289156931|gb|EFD05556.1| DNA ligase (NAD(+)) [Peptostreptococcus anaerobius 653-L]
Length = 700
Score = 83.0 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 32/69 (46%)
Query: 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
+ SL A V L +H YY DNP +D YDR+ L L++++P+L
Sbjct: 19 DIGSLDIDGARDLVGDLTYTLNYHSDSYYNKDNPEISDYQYDRMMRCLIGLEDKYPDLKA 78
Query: 110 EDHPWNTVG 118
D P VG
Sbjct: 79 PDSPSVRVG 87
>gi|330752433|emb|CBL87383.1| DNA ligase [uncultured Flavobacteria bacterium]
Length = 663
Score = 83.0 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 26/54 (48%)
Query: 65 YLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L H YY LD P +D +D ++L L+ Q+PEL D + P VG
Sbjct: 9 QLRNELRKHNHNYYVLDTPTISDFEFDIKLKKLQVLESQYPELSDPNSPTMRVG 62
>gi|325283108|ref|YP_004255649.1| DNA ligase [Deinococcus proteolyticus MRP]
gi|324314917|gb|ADY26032.1| DNA ligase [Deinococcus proteolyticus MRP]
Length = 676
Score = 83.0 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 23/54 (42%)
Query: 65 YLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L H + YY DNP D YD ++ ++ A + + PE P VG
Sbjct: 15 RLRAELERHNRAYYEQDNPEIPDDEYDALARQVRAAEAEHPEWAAAGSPTERVG 68
>gi|311740579|ref|ZP_07714406.1| NAD-dependent DNA ligase LigA [Corynebacterium pseudogenitalium
ATCC 33035]
gi|311304099|gb|EFQ80175.1| NAD-dependent DNA ligase LigA [Corynebacterium pseudogenitalium
ATCC 33035]
Length = 689
Score = 83.0 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E L + H+ YY + P D +D + +RL AL+E+ PEL D P VG
Sbjct: 13 EWNDLAQEVRRHRNLYYNGE-PAIPDADFDALFQRLLALEEEHPELAVPDSPTQQVG 68
>gi|224476961|ref|YP_002634567.1| DNA ligase [Staphylococcus carnosus subsp. carnosus TM300]
gi|254781419|sp|B9DMU3|DNLJ_STACT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|222421568|emb|CAL28382.1| DNA ligase [Staphylococcus carnosus subsp. carnosus TM300]
Length = 668
Score = 83.0 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 26/62 (41%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
E V+ L + + YY DNP D YD++ L ++ PE ED P
Sbjct: 2 AELATRVQELHHLLNKYSHEYYVQDNPSVPDSEYDKLLRELIDIENAHPEYKTEDSPTVR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|325684644|gb|EGD26799.1| NAD-dependent DNA ligase LigA [Lactobacillus delbrueckii subsp.
lactis DSM 20072]
Length = 671
Score = 83.0 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 27/64 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S EA EV L K YY D P+ D +YD RL L+ +PEL D
Sbjct: 4 SLEEAKQEVRQLRAQLDQWAKAYYEQDAPVVEDHVYDEKYARLLELEAAYPELKSADSIT 63
Query: 115 NTVG 118
VG
Sbjct: 64 QRVG 67
>gi|239638039|ref|ZP_04678998.1| DNA ligase, NAD-dependent [Staphylococcus warneri L37603]
gi|239596322|gb|EEQ78860.1| DNA ligase, NAD-dependent [Staphylococcus warneri L37603]
Length = 668
Score = 83.0 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
E V L + + YY DNP D YD++ L ++ + PE D P
Sbjct: 2 SELQNRVNDLHDLLNQYSYEYYVQDNPSVPDSEYDKLLHELIHIESEHPEFKTPDSPTVR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|291513768|emb|CBK62978.1| DNA ligase, NAD-dependent [Alistipes shahii WAL 8301]
Length = 674
Score = 83.0 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 24/60 (40%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+E L + H YY + P +D +D + L L+ PE D + P VG
Sbjct: 2 VRERIEELRRQLELHNFKYYVENAPEISDFEFDAMMRELQDLERAHPEYADPNSPSVRVG 61
>gi|123774771|sp|Q47SC6|DNLJ_THEFY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|71914739|gb|AAZ54641.1| NAD-dependent DNA ligase [Thermobifida fusca YX]
Length = 745
Score = 83.0 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
+ L + + YY L +P+ +D YD++ L L+ Q+P L D P
Sbjct: 27 PADVRERHARLSQDLDDYSYRYY-LGSPIISDAEYDQLMAELRDLEAQYPSLVTPDSPTQ 85
Query: 116 TVG 118
VG
Sbjct: 86 KVG 88
>gi|260889570|ref|ZP_05900833.1| DNA ligase, NAD-dependent [Leptotrichia hofstadii F0254]
gi|260860981|gb|EEX75481.1| DNA ligase, NAD-dependent [Leptotrichia hofstadii F0254]
Length = 702
Score = 83.0 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD----- 109
S + + L +H YY D PL +D YD + L L++++PEL
Sbjct: 22 SFSDVQEKYAKLRNEIEYHNNLYYNEDKPLISDMEYDALMRELKQLEQKYPELLKNEENG 81
Query: 110 EDHPWNTVG 118
E P +G
Sbjct: 82 ESSPTEKIG 90
>gi|223044011|ref|ZP_03614051.1| DNA ligase, NAD-dependent [Staphylococcus capitis SK14]
gi|222442554|gb|EEE48659.1| DNA ligase, NAD-dependent [Staphylococcus capitis SK14]
Length = 667
Score = 83.0 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 25/59 (42%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
V L + + YY DNP D YD++ L ++E+ PE D P VG
Sbjct: 5 QSRVNELHDLLNQYSYEYYVQDNPSVPDSEYDKLLHELIDIEEKHPEYKTADSPTVRVG 63
>gi|322387936|ref|ZP_08061543.1| NAD-dependent DNA ligase LigA [Streptococcus infantis ATCC 700779]
gi|321141209|gb|EFX36707.1| NAD-dependent DNA ligase LigA [Streptococcus infantis ATCC 700779]
Length = 652
Score = 83.0 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 29/58 (50%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ LV++ + YY DNP +D YDR+ L L+ +PE D P + VG
Sbjct: 3 ERMKELVELLNRYATEYYTSDNPSVSDSEYDRLYRELVELEIAYPEQVLPDSPTHRVG 60
>gi|161723110|ref|YP_288664.2| NAD-dependent DNA ligase LigA [Thermobifida fusca YX]
Length = 731
Score = 82.6 bits (203), Expect = 1e-14, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
+ L + + YY L +P+ +D YD++ L L+ Q+P L D P
Sbjct: 13 PADVRERHARLSQDLDDYSYRYY-LGSPIISDAEYDQLMAELRDLEAQYPSLVTPDSPTQ 71
Query: 116 TVG 118
VG
Sbjct: 72 KVG 74
>gi|58336856|ref|YP_193441.1| DNA ligase [Lactobacillus acidophilus NCFM]
gi|227903415|ref|ZP_04021220.1| DNA ligase [Lactobacillus acidophilus ATCC 4796]
gi|75357942|sp|Q5FLL4|DNLJ_LACAC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|58254173|gb|AAV42410.1| DNA ligase [Lactobacillus acidophilus NCFM]
gi|227868891|gb|EEJ76312.1| DNA ligase [Lactobacillus acidophilus ATCC 4796]
Length = 668
Score = 82.6 bits (203), Expect = 1e-14, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 29/68 (42%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
+ ++ EA E L YY D P D +YD+ RL L++QFPE+
Sbjct: 1 MADITLDEAKKEASLLRNQLDKWADAYYSKDAPEVEDNVYDQKYSRLLELEKQFPEIVTP 60
Query: 111 DHPWNTVG 118
D VG
Sbjct: 61 DSITQRVG 68
>gi|161485980|ref|NP_737948.2| NAD-dependent DNA ligase LigA [Corynebacterium efficiens YS-314]
gi|259506289|ref|ZP_05749191.1| DNA ligase [Corynebacterium efficiens YS-314]
gi|259166069|gb|EEW50623.1| DNA ligase [Corynebacterium efficiens YS-314]
Length = 678
Score = 82.6 bits (203), Expect = 1e-14, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
+ L + +H+ YY P D +D + +L L+EQ PEL D P
Sbjct: 4 DNAQLRRTWNELAEKVRYHRDLYYNQ-QPEIPDADFDALFRQLQDLEEQHPELAVPDSPT 62
Query: 115 NTVG 118
VG
Sbjct: 63 KEVG 66
>gi|313123177|ref|YP_004033436.1| DNA ligase [Lactobacillus delbrueckii subsp. bulgaricus ND02]
gi|312279740|gb|ADQ60459.1| DNA ligase [Lactobacillus delbrueckii subsp. bulgaricus ND02]
Length = 671
Score = 82.6 bits (203), Expect = 1e-14, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 27/64 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S EA EV L K YY D P+ D +YD RL L+ +PEL D
Sbjct: 4 SLEEAKQEVRQLRAQLDQWAKAYYEQDAPVVEDHVYDEKYARLLELEAAYPELKSADSIT 63
Query: 115 NTVG 118
VG
Sbjct: 64 QRVG 67
>gi|256824829|ref|YP_003148789.1| DNA ligase, NAD-dependent [Kytococcus sedentarius DSM 20547]
gi|256688222|gb|ACV06024.1| DNA ligase, NAD-dependent [Kytococcus sedentarius DSM 20547]
Length = 770
Score = 82.6 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Query: 46 DKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFP 105
D A+ + + + L + H+ YY L P +D +D + L+ L+ + P
Sbjct: 26 DAAQNTPDVPDEGVRHQWDDLARRVREHRFAYY-LGRPTISDADFDALFRELEQLESEHP 84
Query: 106 ELFDEDHPWNTVG 118
L + P VG
Sbjct: 85 GLRTPESPTQEVG 97
>gi|171779630|ref|ZP_02920586.1| hypothetical protein STRINF_01467 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171281732|gb|EDT47166.1| hypothetical protein STRINF_01467 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 652
Score = 82.6 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ LV ++K YY D P +D YD++ L L++ P+L D P VG
Sbjct: 2 KERIQKLVDELNQYRKEYYTQDQPTVSDSEYDKLYRELVELEKANPDLILPDSPTQAVG 60
>gi|16800936|ref|NP_471204.1| NAD-dependent DNA ligase LigA [Listeria innocua Clip11262]
gi|81526387|sp|Q92AQ0|DNLJ_LISIN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|16414371|emb|CAC97100.1| lin1870 [Listeria innocua Clip11262]
Length = 671
Score = 82.6 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 26/59 (44%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E L+ I + YY +DNP D YD+ + L ++E PE + P VG
Sbjct: 4 KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIEEAHPEWVTPESPSKRVG 62
>gi|314934069|ref|ZP_07841432.1| DNA ligase, NAD-dependent [Staphylococcus caprae C87]
gi|313653180|gb|EFS16939.1| DNA ligase, NAD-dependent [Staphylococcus caprae C87]
Length = 667
Score = 82.6 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 26/62 (41%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ V L + + YY DNP D YD++ L ++E+ PE D P
Sbjct: 2 EDLQSRVNELHDLLNQYSYEYYVQDNPSVPDSEYDKLLHELIDIEEKHPEYKTADSPTVR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|332829049|gb|EGK01713.1| DNA ligase [Dysgonomonas gadei ATCC BAA-286]
Length = 665
Score = 82.6 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++E L + H YY L +P +D +D+ + L L+ PE FD + P VG
Sbjct: 4 IKQQIEALREELNKHNHDYYVLSSPTISDFEFDKKLKELSELETLHPEYFDANSPTQRVG 63
>gi|322385709|ref|ZP_08059353.1| NAD-dependent DNA ligase LigA [Streptococcus cristatus ATCC 51100]
gi|321270447|gb|EFX53363.1| NAD-dependent DNA ligase LigA [Streptococcus cristatus ATCC 51100]
Length = 652
Score = 82.6 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 28/59 (47%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LVK+ + YY D P +D YDR+ L L+E++P D P + VG
Sbjct: 2 KERMSELVKLLNRYAHEYYTADRPSVSDSEYDRLYRELVELEEKYPTDILPDSPTHRVG 60
>gi|329726878|gb|EGG63336.1| DNA ligase (NAD+) [Staphylococcus epidermidis VCU144]
Length = 665
Score = 82.6 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ V L + + YY DNP D YD++ L ++E++PE D P
Sbjct: 2 QDVKKRVGKLHDLLNQYSYEYYVQDNPSVPDNEYDKLLHELIEIEEKYPEFKSTDSPTVR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|315303635|ref|ZP_07874170.1| DNA ligase, NAD-dependent [Listeria ivanovii FSL F6-596]
gi|313627998|gb|EFR96596.1| DNA ligase, NAD-dependent [Listeria ivanovii FSL F6-596]
Length = 678
Score = 82.6 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 26/59 (44%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E L+ I + YY +DNP D YD+ + L ++ PE + P N VG
Sbjct: 11 KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLQIEAAHPEWVTPESPSNRVG 69
>gi|222481049|ref|YP_002567286.1| DNA ligase, NAD-dependent [Halorubrum lacusprofundi ATCC 49239]
gi|254781342|sp|B9LU22|DNLJ_HALLT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|222453951|gb|ACM58216.1| DNA ligase, NAD-dependent [Halorubrum lacusprofundi ATCC 49239]
Length = 710
Score = 82.6 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 41 LESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDAL 100
+E+ + V +LS+ EA + L H YY +PL D YDR+ RL L
Sbjct: 17 VEAPPTDFEPVGALSEDEATEQASLLRAAIREHDHRYYLEADPLIPDETYDRLFTRLQEL 76
Query: 101 QEQFPELFDEDHPWNTVG 118
+ +F +L ++ P VG
Sbjct: 77 ENEF-DLPTQNSPTRRVG 93
>gi|78185772|ref|YP_378206.1| NAD-dependent DNA ligase LigA [Synechococcus sp. CC9902]
gi|123743489|sp|Q3AUH7|DNLJ_SYNS9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|78170066|gb|ABB27163.1| DNA ligase (NAD+) [Synechococcus sp. CC9902]
Length = 680
Score = 82.6 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
+ E E+ L+ A H YY LD P D +YDR+ + L L++ P L D P
Sbjct: 3 DQSERATELRNLLNTAAH---AYYVLDTPTMEDAVYDRLYQELLELEQNTPSLKTADSPT 59
Query: 115 NTVG 118
VG
Sbjct: 60 QRVG 63
>gi|313623350|gb|EFR93577.1| DNA ligase, NAD-dependent [Listeria innocua FSL J1-023]
Length = 671
Score = 82.6 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 26/59 (44%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E L+ I + YY +DNP D YD+ + L ++E PE + P VG
Sbjct: 4 KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIEEAHPEWVTPESPSKRVG 62
>gi|282919739|ref|ZP_06327471.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
C427]
gi|282316377|gb|EFB46754.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
C427]
Length = 667
Score = 82.6 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 25/58 (43%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
V L + + YY DNP D YD++ L ++E+ PE D P VG
Sbjct: 6 SRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELIKIEEEHPEFKTVDSPTVRVG 63
>gi|46907988|ref|YP_014377.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes serotype 4b
str. F2365]
gi|81565576|sp|Q71YR0|DNLJ_LISMF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|46881258|gb|AAT04554.1| DNA ligase, NAD-dependent [Listeria monocytogenes serotype 4b str.
F2365]
Length = 671
Score = 82.6 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 26/59 (44%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E L+ I + YY +DNP D YD+ + L ++E PE + P VG
Sbjct: 4 KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIEEAHPEWVTPESPSKRVG 62
>gi|47092911|ref|ZP_00230693.1| DNA ligase, NAD-dependent [Listeria monocytogenes str. 4b H7858]
gi|254825997|ref|ZP_05230998.1| DNA ligase [Listeria monocytogenes FSL J1-194]
gi|254853668|ref|ZP_05243016.1| DNA ligase [Listeria monocytogenes FSL R2-503]
gi|254932796|ref|ZP_05266155.1| DNA ligase [Listeria monocytogenes HPB2262]
gi|300765954|ref|ZP_07075926.1| DNA ligase, NAD-dependent [Listeria monocytogenes FSL N1-017]
gi|47018737|gb|EAL09488.1| DNA ligase, NAD-dependent [Listeria monocytogenes str. 4b H7858]
gi|258607047|gb|EEW19655.1| DNA ligase [Listeria monocytogenes FSL R2-503]
gi|293584349|gb|EFF96381.1| DNA ligase [Listeria monocytogenes HPB2262]
gi|293595236|gb|EFG02997.1| DNA ligase [Listeria monocytogenes FSL J1-194]
gi|300513340|gb|EFK40415.1| DNA ligase, NAD-dependent [Listeria monocytogenes FSL N1-017]
gi|328466510|gb|EGF37653.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes 1816]
gi|328473899|gb|EGF44721.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes 220]
gi|332312198|gb|EGJ25293.1| DNA ligase [Listeria monocytogenes str. Scott A]
Length = 671
Score = 82.6 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 26/59 (44%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E L+ I + YY +DNP D YD+ + L ++E PE + P VG
Sbjct: 4 KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIEEAHPEWVTPESPSKRVG 62
>gi|153806306|ref|ZP_01958974.1| hypothetical protein BACCAC_00565 [Bacteroides caccae ATCC 43185]
gi|149130983|gb|EDM22189.1| hypothetical protein BACCAC_00565 [Bacteroides caccae ATCC 43185]
Length = 666
Score = 82.6 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 27/61 (44%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+ ++E L H YY L+ P +D +D L L++ PE DE+ P V
Sbjct: 2 DIKEKIEGLRAELHRHNYNYYVLNAPEISDKEFDEKIRELQDLEQAHPEYKDENSPTMRV 61
Query: 118 G 118
G
Sbjct: 62 G 62
>gi|313637419|gb|EFS02883.1| DNA ligase, NAD-dependent [Listeria seeligeri FSL S4-171]
Length = 671
Score = 82.6 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 26/59 (44%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E L+ I + YY +DNP D YD+ + L ++E PE + P VG
Sbjct: 4 KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLQIEEAHPEWVTPESPSKRVG 62
>gi|257436941|ref|ZP_05612983.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
M876]
gi|282914702|ref|ZP_06322487.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
M899]
gi|257283730|gb|EEV13855.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
M876]
gi|282321416|gb|EFB51742.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
M899]
Length = 667
Score = 82.6 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 25/58 (43%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
V L + + YY DNP D YD++ L ++E+ PE D P VG
Sbjct: 6 SRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELIKIEEEHPEFKTVDSPTVRVG 63
>gi|49484145|ref|YP_041369.1| DNA ligase [Staphylococcus aureus subsp. aureus MRSA252]
gi|257426036|ref|ZP_05602458.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
55/2053]
gi|257428709|ref|ZP_05605104.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
65-1322]
gi|257431319|ref|ZP_05607695.1| DNA ligase [Staphylococcus aureus subsp. aureus 68-397]
gi|257434037|ref|ZP_05610388.1| DNA ligase [Staphylococcus aureus subsp. aureus E1410]
gi|282904535|ref|ZP_06312420.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
C160]
gi|282906308|ref|ZP_06314160.1| DNA ligase [Staphylococcus aureus subsp. aureus Btn1260]
gi|282909224|ref|ZP_06317040.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282911529|ref|ZP_06319329.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282925143|ref|ZP_06332803.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
C101]
gi|283958665|ref|ZP_06376111.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
A017934/97]
gi|293507779|ref|ZP_06667621.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
58-424]
gi|293510281|ref|ZP_06668987.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
M809]
gi|293539336|ref|ZP_06672015.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
M1015]
gi|295428486|ref|ZP_06821113.1| DNA ligase [Staphylococcus aureus subsp. aureus EMRSA16]
gi|297590042|ref|ZP_06948682.1| NAD-dependent DNA ligase LigA [Staphylococcus aureus subsp. aureus
MN8]
gi|81650789|sp|Q6GFF3|DNLJ_STAAR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|49242274|emb|CAG40981.1| DNA ligase [Staphylococcus aureus subsp. aureus MRSA252]
gi|257271179|gb|EEV03336.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
55/2053]
gi|257274353|gb|EEV05865.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
65-1322]
gi|257277968|gb|EEV08624.1| DNA ligase [Staphylococcus aureus subsp. aureus 68-397]
gi|257280963|gb|EEV11107.1| DNA ligase [Staphylococcus aureus subsp. aureus E1410]
gi|282313101|gb|EFB43499.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
C101]
gi|282324538|gb|EFB54850.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282326792|gb|EFB57089.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282330505|gb|EFB60022.1| DNA ligase [Staphylococcus aureus subsp. aureus Btn1260]
gi|282595091|gb|EFC00058.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
C160]
gi|283789705|gb|EFC28527.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
A017934/97]
gi|290919871|gb|EFD96940.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
M1015]
gi|291094842|gb|EFE25110.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
58-424]
gi|291466645|gb|EFF09165.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
M809]
gi|295127468|gb|EFG57107.1| DNA ligase [Staphylococcus aureus subsp. aureus EMRSA16]
gi|297577170|gb|EFH95884.1| NAD-dependent DNA ligase LigA [Staphylococcus aureus subsp. aureus
MN8]
gi|312437629|gb|ADQ76700.1| NAD-dependent DNA ligase LigA [Staphylococcus aureus subsp. aureus
TCH60]
gi|315193434|gb|EFU23831.1| DNA ligase [Staphylococcus aureus subsp. aureus CGS00]
Length = 667
Score = 82.6 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 25/58 (43%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
V L + + YY DNP D YD++ L ++E+ PE D P VG
Sbjct: 6 SRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELIKIEEEHPEFKTVDSPTVRVG 63
>gi|282889962|ref|ZP_06298497.1| hypothetical protein pah_c008o052 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281500155|gb|EFB42439.1| hypothetical protein pah_c008o052 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 668
Score = 82.6 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 29/65 (44%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++K + + L H K YY P+ +D +D + +L+ ++++ PE P
Sbjct: 1 MTKPSSHQSYQELCNQIWSHNKAYYVDHRPVISDEEFDHLMHQLEQMEKEHPEWISSASP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|226224361|ref|YP_002758468.1| DNA ligase [Listeria monocytogenes Clip81459]
gi|254781359|sp|C1KW57|DNLJ_LISMC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|225876823|emb|CAS05532.1| Putative DNA ligase [Listeria monocytogenes serotype 4b str. CLIP
80459]
Length = 671
Score = 82.6 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 26/59 (44%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E L+ I + YY +DNP D YD+ + L ++E PE + P VG
Sbjct: 4 KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIEEAHPEWVTPESPSKRVG 62
>gi|163747147|ref|ZP_02154503.1| DNA ligase, NAD-dependent [Oceanibulbus indolifex HEL-45]
gi|161379708|gb|EDQ04121.1| DNA ligase, NAD-dependent [Oceanibulbus indolifex HEL-45]
Length = 685
Score = 82.6 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
Y+ D P +D YD + R A++ ++P+L +D P VG
Sbjct: 12 YHTEDAPEISDAEYDALKRRNAAIEARYPDLKRDDSPTEQVG 53
>gi|297626017|ref|YP_003687780.1| DNA ligase (NAD+) [Propionibacterium freudenreichii subsp.
shermanii CIRM-BIA1]
gi|296921782|emb|CBL56340.1| DNA ligase (NAD+) [Propionibacterium freudenreichii subsp.
shermanii CIRM-BIA1]
Length = 764
Score = 82.6 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 26/59 (44%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LVK Q+ YY D P TD LYD + L L+ ++P L D P VG
Sbjct: 29 QRRHAELVKEIDDAQEAYYGRDKPFITDALYDELMLELQKLEAEYPSLRTPDSPTQRVG 87
>gi|290893414|ref|ZP_06556399.1| DNA ligase [Listeria monocytogenes FSL J2-071]
gi|290557065|gb|EFD90594.1| DNA ligase [Listeria monocytogenes FSL J2-071]
Length = 671
Score = 82.6 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 26/59 (44%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E L+ I + YY +DNP D YD+ + L ++E PE + P VG
Sbjct: 4 KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIEEAHPEWVTPESPSKRVG 62
>gi|217964094|ref|YP_002349772.1| DNA ligase, NAD-dependent [Listeria monocytogenes HCC23]
gi|254781360|sp|B8DFG5|DNLJ_LISMH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|217333364|gb|ACK39158.1| DNA ligase, NAD-dependent [Listeria monocytogenes HCC23]
gi|307571338|emb|CAR84517.1| DNA ligase, NAD-dependent [Listeria monocytogenes L99]
Length = 671
Score = 82.6 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 26/59 (44%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E L+ I + YY +DNP D YD+ + L ++E PE + P VG
Sbjct: 4 KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIEEAHPEWVTPESPSKRVG 62
>gi|254993539|ref|ZP_05275729.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes FSL J2-064]
Length = 665
Score = 82.6 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 26/59 (44%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E L+ I + YY +DNP D YD+ + L ++E PE + P VG
Sbjct: 4 KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIEEAHPEWVTPESPSKRVG 62
>gi|32476578|ref|NP_869572.1| DNA ligase [Rhodopirellula baltica SH 1]
gi|81659473|sp|Q7UKD1|DNLJ_RHOBA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|32447124|emb|CAD76950.1| DNA ligase [Rhodopirellula baltica SH 1]
Length = 706
Score = 82.6 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 25/62 (40%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
V+ LV H + YY P TD YD++ L L+ P+L D P
Sbjct: 10 DSIASRVQQLVDEINRHNRLYYDDAAPEITDLQYDQLLAELTQLENDHPDLRRPDSPTQL 69
Query: 117 VG 118
VG
Sbjct: 70 VG 71
>gi|87119444|ref|ZP_01075341.1| NAD-dependent DNA ligase [Marinomonas sp. MED121]
gi|86164920|gb|EAQ66188.1| NAD-dependent DNA ligase [Marinomonas sp. MED121]
Length = 676
Score = 82.6 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 26/58 (44%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ LV + Y+ D P +D YD L AL++Q P+L D P VG
Sbjct: 7 AQISELVNRLNDYSYAYHVKDEPKVSDAEYDLDYRTLIALEKQAPDLIQADSPTQRVG 64
>gi|254829489|ref|ZP_05234176.1| DNA ligase [Listeria monocytogenes FSL N3-165]
gi|258601904|gb|EEW15229.1| DNA ligase [Listeria monocytogenes FSL N3-165]
Length = 671
Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 26/59 (44%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E L+ I + YY +DNP D YD+ + L ++E PE + P VG
Sbjct: 4 KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIEEAHPEWVTPESPSKRVG 62
>gi|255026038|ref|ZP_05298024.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes FSL J2-003]
Length = 671
Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 26/59 (44%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E L+ I + YY +DNP D YD+ + L ++E PE + P VG
Sbjct: 4 KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIEEAHPEWVTPESPSKRVG 62
>gi|118581474|ref|YP_902724.1| DNA ligase, NAD-dependent [Pelobacter propionicus DSM 2379]
gi|166216225|sp|A1ATJ6|DNLJ_PELPD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|118504184|gb|ABL00667.1| DNA ligase, NAD-dependent [Pelobacter propionicus DSM 2379]
Length = 704
Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNP--LFTDGLYDRVSERLDALQEQFPEL 107
T +K ++ L ++ H+ + YY P D YD + + L L+ +FPE
Sbjct: 5 PTTEQTKNIVAERIQELRQLIAHNNRLYYENIPPRREIHDYEYDELFKELQELESRFPEF 64
Query: 108 FDEDHPWNTVG 118
D P VG
Sbjct: 65 QSADSPTQIVG 75
>gi|242371787|ref|ZP_04817361.1| DNA ligase [Staphylococcus epidermidis M23864:W1]
gi|242350488|gb|EES42089.1| DNA ligase [Staphylococcus epidermidis M23864:W1]
Length = 667
Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 25/62 (40%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ V L + + YY DNP D YD++ L ++ + PE D P
Sbjct: 2 EDLQRRVNELHDLLNQYSYEYYVQDNPSVPDSEYDKLLHELIEIETEHPEYKTADSPTVR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|198283038|ref|YP_002219359.1| NAD-dependent DNA ligase [Acidithiobacillus ferrooxidans ATCC
53993]
gi|218666742|ref|YP_002425245.1| DNA ligase, NAD-dependent [Acidithiobacillus ferrooxidans ATCC
23270]
gi|254781244|sp|B7J653|DNLJ_ACIF2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254781245|sp|B5EP61|DNLJ_ACIF5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|198247559|gb|ACH83152.1| DNA ligase, NAD-dependent [Acidithiobacillus ferrooxidans ATCC
53993]
gi|218518955|gb|ACK79541.1| DNA ligase, NAD-dependent [Acidithiobacillus ferrooxidans ATCC
23270]
Length = 671
Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 25/58 (43%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L + YYR D+P +D YD L L+++ P+ D P VG
Sbjct: 10 ERIQQLRAELVAANNAYYREDSPTLSDAEYDARLRELRTLEDRNPQWQSADSPTQRVG 67
>gi|332523413|ref|ZP_08399665.1| DNA ligase (NAD+) [Streptococcus porcinus str. Jelinkova 176]
gi|332314677|gb|EGJ27662.1| DNA ligase (NAD+) [Streptococcus porcinus str. Jelinkova 176]
Length = 652
Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L + +++ YY DNP +D YD++ L AL+ ++PE +D P VG
Sbjct: 2 EKRIIELTNLLNQYRQEYYTNDNPTVSDQEYDKLYHELLALETEYPEFIQKDSPTQGVG 60
>gi|126661836|ref|ZP_01732835.1| DNA ligase [Flavobacteria bacterium BAL38]
gi|126625215|gb|EAZ95904.1| DNA ligase [Flavobacteria bacterium BAL38]
Length = 663
Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L + H YY LDNP+ +D +D+ ++L L+ Q P+ FDE+ P VG
Sbjct: 7 IKNLREELNQHNYNYYVLDNPIISDFEFDQKLKQLQDLEIQNPDFFDENSPTQRVG 62
>gi|47095684|ref|ZP_00233291.1| DNA ligase, NAD-dependent [Listeria monocytogenes str. 1/2a F6854]
gi|254900737|ref|ZP_05260661.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes J0161]
gi|254913778|ref|ZP_05263790.1| DNA ligase [Listeria monocytogenes J2818]
gi|254938165|ref|ZP_05269862.1| DNA ligase [Listeria monocytogenes F6900]
gi|284802202|ref|YP_003414067.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes 08-5578]
gi|284995344|ref|YP_003417112.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes 08-5923]
gi|47015969|gb|EAL06895.1| DNA ligase, NAD-dependent [Listeria monocytogenes str. 1/2a F6854]
gi|258610778|gb|EEW23386.1| DNA ligase [Listeria monocytogenes F6900]
gi|284057764|gb|ADB68705.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes 08-5578]
gi|284060811|gb|ADB71750.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes 08-5923]
gi|293591794|gb|EFG00129.1| DNA ligase [Listeria monocytogenes J2818]
Length = 671
Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 26/59 (44%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E L+ I + YY +DNP D YD+ + L ++E PE + P VG
Sbjct: 4 KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIEEAHPEWVTPESPSKRVG 62
>gi|298208451|ref|YP_003716630.1| DNA ligase [Croceibacter atlanticus HTCC2559]
gi|83848374|gb|EAP86243.1| DNA ligase [Croceibacter atlanticus HTCC2559]
Length = 664
Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 30/60 (50%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L + H YY LD P +D +D+ ++L L+ + PE +D + P VG
Sbjct: 3 VKDQIQQLREELRQHNYNYYVLDKPEISDYDFDQKLKQLQDLETENPEFYDANSPTLRVG 62
>gi|319744895|gb|EFV97229.1| NAD-dependent DNA ligase LigA [Streptococcus agalactiae ATCC 13813]
Length = 652
Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV + + K YY DNP +D YD++ L L+EQ PE + P + VG
Sbjct: 2 ENRMNELVSLLNQYAKEYYTQDNPTVSDSQYDQLYRELVELEEQHPENILPNSPTHRVG 60
>gi|25010923|ref|NP_735318.1| NAD-dependent DNA ligase LigA [Streptococcus agalactiae NEM316]
gi|81457056|sp|Q8E5W1|DNLJ_STRA3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|23095302|emb|CAD46512.1| Unknown [Streptococcus agalactiae NEM316]
Length = 652
Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV + + K YY DNP +D YD++ L L+EQ PE + P + VG
Sbjct: 2 ENRMNELVSLLNQYAKEYYTQDNPTVSDSQYDQLYRELVELEEQHPENILPNSPTHRVG 60
>gi|323143662|ref|ZP_08078336.1| DNA ligase (NAD+) [Succinatimonas hippei YIT 12066]
gi|322416595|gb|EFY07255.1| DNA ligase (NAD+) [Succinatimonas hippei YIT 12066]
Length = 696
Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 64 EYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV + + K YY D+P+ TD YDR+ +L+ +++ P + D P VG
Sbjct: 9 KDLVALLNRYAKAYYVDDDPIVTDSEYDRLYRQLEIMEQADPTIISPDSPTRRVG 63
>gi|258421012|ref|ZP_05683943.1| DNA ligase, NAD-dependent [Staphylococcus aureus A9719]
gi|257842960|gb|EEV67378.1| DNA ligase, NAD-dependent [Staphylococcus aureus A9719]
Length = 667
Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 25/58 (43%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
V L + + YY DNP D YD++ L ++E+ PE D P VG
Sbjct: 6 SRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTVDSPTVRVG 63
>gi|114797923|ref|YP_759116.1| DNA ligase, NAD-dependent [Hyphomonas neptunium ATCC 15444]
gi|122942770|sp|Q0C577|DNLJ_HYPNA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|114738097|gb|ABI76222.1| DNA ligase, NAD-dependent [Hyphomonas neptunium ATCC 15444]
Length = 701
Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY+ D P TD YD + +R A++ +FP L ED P + VG
Sbjct: 33 YYQNDAPELTDADYDALRQRNLAIEARFPALKREDSPTDRVG 74
>gi|82751560|ref|YP_417301.1| DNA ligase [Staphylococcus aureus RF122]
gi|123754599|sp|Q2YU70|DNLJ_STAAB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|82657091|emb|CAI81528.1| DNA ligase [Staphylococcus aureus RF122]
Length = 667
Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 25/58 (43%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
V L + + YY DNP D YD++ L ++E+ PE D P VG
Sbjct: 6 SRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTVDSPTVRVG 63
>gi|254832503|ref|ZP_05237158.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes 10403S]
Length = 671
Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 26/59 (44%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E L+ I + YY +DNP D YD+ + L ++E PE + P VG
Sbjct: 4 KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIEEAHPEWVTPESPSKRVG 62
>gi|16803798|ref|NP_465283.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes EGD-e]
gi|224499523|ref|ZP_03667872.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes Finland 1988]
gi|224503316|ref|ZP_03671623.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes FSL R2-561]
gi|81508669|sp|Q8Y6D0|DNLJ_LISMO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|16411212|emb|CAC99836.1| lmo1758 [Listeria monocytogenes EGD-e]
Length = 671
Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 26/59 (44%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E L+ I + YY +DNP D YD+ + L ++E PE + P VG
Sbjct: 4 KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIEEAHPEWVTPESPSKRVG 62
>gi|16329180|ref|NP_439908.1| NAD-dependent DNA ligase LigA [Synechocystis sp. PCC 6803]
gi|7674015|sp|P72588|DNLJ_SYNY3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|1651660|dbj|BAA16588.1| DNA ligase [Synechocystis sp. PCC 6803]
Length = 669
Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 75 KWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P+ D +YD++ L L+ + PEL D P VG
Sbjct: 19 YAYYVLDAPVMEDSVYDQLYRELQRLEAENPELITPDSPTQRVG 62
>gi|78214056|ref|YP_382835.1| NAD-dependent DNA ligase LigA [Synechococcus sp. CC9605]
gi|123729638|sp|Q3AGK2|DNLJ_SYNSC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|78198515|gb|ABB36280.1| DNA ligase, NAD-dependent [Synechococcus sp. CC9605]
Length = 680
Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 23/58 (39%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L + YY LD P D +YDR+ L L++ P L D P VG
Sbjct: 6 ERAAELRHLLNRAGHAYYVLDAPEMEDTVYDRLYRELLELEQNDPGLQRPDSPTQRVG 63
>gi|317477010|ref|ZP_07936252.1| DNA ligase [Bacteroides eggerthii 1_2_48FAA]
gi|316906803|gb|EFV28515.1| DNA ligase [Bacteroides eggerthii 1_2_48FAA]
Length = 666
Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 27/60 (45%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L H YY L+ P +D +D + L L+++ PE DE+ P VG
Sbjct: 3 IKERIDQLRTDLHRHNYNYYVLNTPEISDKEFDDMMRELQDLEKEHPEYQDENSPTMRVG 62
>gi|332359434|gb|EGJ37254.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK355]
Length = 652
Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 28/59 (47%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LVK+ + YY D P +D YDR+ L L+E++P D P + VG
Sbjct: 2 KERMSELVKLLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDILPDSPTHRVG 60
>gi|258422981|ref|ZP_05685880.1| DNA ligase, NAD-dependent [Staphylococcus aureus A9635]
gi|257846768|gb|EEV70783.1| DNA ligase, NAD-dependent [Staphylococcus aureus A9635]
Length = 667
Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 25/58 (43%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
V L + + YY DNP D YD++ L ++E+ PE D P VG
Sbjct: 6 SRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTVDSPTVRVG 63
>gi|253729682|ref|ZP_04863847.1| DNA ligase [Staphylococcus aureus subsp. aureus USA300_TCH959]
gi|253726568|gb|EES95297.1| DNA ligase [Staphylococcus aureus subsp. aureus USA300_TCH959]
Length = 667
Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 25/58 (43%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
V L + + YY DNP D YD++ L ++E+ PE D P VG
Sbjct: 6 SRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTVDSPTVRVG 63
>gi|218131107|ref|ZP_03459911.1| hypothetical protein BACEGG_02712 [Bacteroides eggerthii DSM 20697]
gi|217986811|gb|EEC53144.1| hypothetical protein BACEGG_02712 [Bacteroides eggerthii DSM 20697]
Length = 666
Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 27/60 (45%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L H YY L+ P +D +D + L L+++ PE DE+ P VG
Sbjct: 3 IKERIDQLRTDLHRHNYNYYVLNTPEISDKEFDDMMRELQDLEKEHPEYQDENSPTMRVG 62
>gi|57650655|ref|YP_186789.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus COL]
gi|81694155|sp|Q5HEL8|DNLJ_STAAC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|57284841|gb|AAW36935.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus COL]
Length = 667
Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 25/58 (43%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
V L + + YY DNP D YD++ L ++E+ PE D P VG
Sbjct: 6 SRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTVDSPTVRVG 63
>gi|325694926|gb|EGD36831.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK150]
Length = 652
Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV++ + YY D P +D YDR+ L L+E++P D P + VG
Sbjct: 2 KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDILPDSPTHRVG 60
>gi|302333569|gb|ADL23762.1| DNA ligase (polydeoxyribonucleotide syntase) [Staphylococcus aureus
subsp. aureus JKD6159]
Length = 667
Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 25/58 (43%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
V L + + YY DNP D YD++ L ++E+ PE D P VG
Sbjct: 6 SRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTVDSPTVRVG 63
>gi|260655066|ref|ZP_05860554.1| DNA ligase, NAD-dependent [Jonquetella anthropi E3_33 E1]
gi|260630177|gb|EEX48371.1| DNA ligase, NAD-dependent [Jonquetella anthropi E3_33 E1]
Length = 670
Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 27/59 (45%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV+ + YY D P+ +D +D++ L +++ + P+ D P VG
Sbjct: 4 RARYDELVETVNENSYLYYVKDAPVLSDFEWDQLMNELLSIEREHPDWIRPDSPSRRVG 62
>gi|21283574|ref|NP_646662.1| DNA ligase [Staphylococcus aureus subsp. aureus MW2]
gi|49486723|ref|YP_043944.1| DNA ligase [Staphylococcus aureus subsp. aureus MSSA476]
gi|87161485|ref|YP_494537.1| DNA ligase [Staphylococcus aureus subsp. aureus USA300_FPR3757]
gi|88195803|ref|YP_500613.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus NCTC
8325]
gi|151222054|ref|YP_001332876.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus str.
Newman]
gi|161510127|ref|YP_001575786.1| DNA ligase (NAD(+)) [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|221140357|ref|ZP_03564850.1| DNA ligase (NAD(+)) [Staphylococcus aureus subsp. aureus str.
JKD6009]
gi|253734986|ref|ZP_04869151.1| DNA ligase [Staphylococcus aureus subsp. aureus TCH130]
gi|258451030|ref|ZP_05699066.1| DNA ligase, NAD-dependent [Staphylococcus aureus A5948]
gi|282923243|ref|ZP_06330924.1| DNA ligase, NAD-dependent [Staphylococcus aureus A9765]
gi|284024951|ref|ZP_06379349.1| DNA ligase [Staphylococcus aureus subsp. aureus 132]
gi|294849453|ref|ZP_06790195.1| DNA ligase [Staphylococcus aureus A9754]
gi|297208934|ref|ZP_06925338.1| NAD-dependent DNA ligase LigA [Staphylococcus aureus subsp. aureus
ATCC 51811]
gi|300913009|ref|ZP_07130447.1| NAD-dependent DNA ligase LigA [Staphylococcus aureus subsp. aureus
TCH70]
gi|304379092|ref|ZP_07361839.1| NAD-dependent DNA ligase LigA [Staphylococcus aureus subsp. aureus
ATCC BAA-39]
gi|75410712|sp|Q9AIU7|DNLJ_STAAU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|81649030|sp|Q6G829|DNLJ_STAAS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|81704301|sp|Q7A0H1|DNLJ_STAAW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|123098079|sp|Q2G1Y0|DNLJ_STAA8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|123749595|sp|Q2FFJ1|DNLJ_STAA3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|190359293|sp|A6QID2|DNLJ_STAAE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|190359294|sp|A8Z2R8|DNLJ_STAAT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|13182984|gb|AAK15020.1| DNA ligase [Staphylococcus aureus]
gi|21205015|dbj|BAB95710.1| DNA ligase [Staphylococcus aureus subsp. aureus MW2]
gi|49245166|emb|CAG43632.1| DNA ligase [Staphylococcus aureus subsp. aureus MSSA476]
gi|87127459|gb|ABD21973.1| DNA ligase [Staphylococcus aureus subsp. aureus USA300_FPR3757]
gi|87203361|gb|ABD31171.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus NCTC
8325]
gi|150374854|dbj|BAF68114.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus str.
Newman]
gi|160368936|gb|ABX29907.1| DNA ligase (NAD(+)) [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|253727168|gb|EES95897.1| DNA ligase [Staphylococcus aureus subsp. aureus TCH130]
gi|257861272|gb|EEV84084.1| DNA ligase, NAD-dependent [Staphylococcus aureus A5948]
gi|269941376|emb|CBI49773.1| DNA ligase [Staphylococcus aureus subsp. aureus TW20]
gi|282593154|gb|EFB98153.1| DNA ligase, NAD-dependent [Staphylococcus aureus A9765]
gi|294823590|gb|EFG40017.1| DNA ligase [Staphylococcus aureus A9754]
gi|296886424|gb|EFH25353.1| NAD-dependent DNA ligase LigA [Staphylococcus aureus subsp. aureus
ATCC 51811]
gi|298695246|gb|ADI98468.1| DNA ligase [Staphylococcus aureus subsp. aureus ED133]
gi|300885787|gb|EFK80994.1| NAD-dependent DNA ligase LigA [Staphylococcus aureus subsp. aureus
TCH70]
gi|302751777|gb|ADL65954.1| DNA ligase (polydeoxyribonucleotide syntase) [Staphylococcus aureus
subsp. aureus str. JKD6008]
gi|304342327|gb|EFM08219.1| NAD-dependent DNA ligase LigA [Staphylococcus aureus subsp. aureus
ATCC BAA-39]
gi|320139715|gb|EFW31584.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
MRSA131]
gi|320142368|gb|EFW34182.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
MRSA177]
gi|323439848|gb|EGA97564.1| DNA ligase [Staphylococcus aureus O11]
gi|323443011|gb|EGB00632.1| DNA ligase [Staphylococcus aureus O46]
gi|329314581|gb|AEB88994.1| DNA ligase [Staphylococcus aureus subsp. aureus T0131]
gi|329728576|gb|EGG65006.1| DNA ligase (NAD+) [Staphylococcus aureus subsp. aureus 21189]
gi|329731482|gb|EGG67845.1| DNA ligase (NAD+) [Staphylococcus aureus subsp. aureus 21193]
Length = 667
Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 25/58 (43%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
V L + + YY DNP D YD++ L ++E+ PE D P VG
Sbjct: 6 SRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTVDSPTVRVG 63
>gi|229828351|ref|ZP_04454420.1| hypothetical protein GCWU000342_00409 [Shuttleworthia satelles DSM
14600]
gi|229792945|gb|EEP29059.1| hypothetical protein GCWU000342_00409 [Shuttleworthia satelles DSM
14600]
Length = 675
Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 26/55 (47%)
Query: 64 EYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L+ +H YY D +D YD++ ++L A + + P+ D P +G
Sbjct: 7 QELIDQINYHMDLYYNQDKTEISDYEYDQLMQQLKAAEAEHPDWVRPDSPSQKIG 61
>gi|289581750|ref|YP_003480216.1| DNA ligase, NAD-dependent [Natrialba magadii ATCC 43099]
gi|289531303|gb|ADD05654.1| DNA ligase, NAD-dependent [Natrialba magadii ATCC 43099]
Length = 699
Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 48 AKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
+ LS EA +VE L H + YY ++PL D YD + ERL L+ F +L
Sbjct: 21 FEPPEQLSDDEAEQQVEQLRDAIREHDRRYYVENDPLIADRTYDTLFERLQVLESTF-DL 79
Query: 108 FDEDHPWNTVG 118
D P +VG
Sbjct: 80 SHPDSPTRSVG 90
>gi|182411830|ref|YP_001816896.1| DNA ligase, NAD-dependent [Opitutus terrae PB90-1]
gi|254778148|sp|B1ZWH2|DNLJ1_OPITP RecName: Full=DNA ligase 1; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] 1
gi|177839044|gb|ACB73296.1| DNA ligase, NAD-dependent [Opitutus terrae PB90-1]
Length = 675
Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 25/65 (38%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ EA + L H + Y+R P D YD + L L+ +P+ P
Sbjct: 1 MTPVEAQSRIAELRAQVARHDELYHRRAQPQIGDFEYDALKRELAELEAAWPQFARGASP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TEQVG 65
>gi|157804104|ref|YP_001492653.1| NAD-dependent DNA ligase LigA [Rickettsia canadensis str. McKiel]
gi|166216233|sp|A8EZT5|DNLJ_RICCK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|157785367|gb|ABV73868.1| DNA ligase [Rickettsia canadensis str. McKiel]
Length = 689
Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 32/65 (49%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+S+ EA ++ L + YY +N L +D YD++ L+++FP L E+ P
Sbjct: 7 ISEKEAKKLLKELADKIERYNHAYYIENNHLVSDAEYDQLFNTNLKLEQKFPHLILENSP 66
Query: 114 WNTVG 118
VG
Sbjct: 67 SKKVG 71
>gi|146301217|ref|YP_001195808.1| DNA ligase, NAD-dependent [Flavobacterium johnsoniae UW101]
gi|190359257|sp|A5FE87|DNLJ_FLAJO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|146155635|gb|ABQ06489.1| DNA ligase, NAD-dependent [Flavobacterium johnsoniae UW101]
Length = 668
Score = 81.8 bits (201), Expect = 2e-14, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 28/56 (50%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L + H YY LDN +D +D + L L+ + PE FDED P VG
Sbjct: 7 IQTLREELNQHNYNYYVLDNATISDYDFDIKLKELQDLENKHPEFFDEDSPTQRVG 62
>gi|15924894|ref|NP_372428.1| DNA ligase [Staphylococcus aureus subsp. aureus Mu50]
gi|15927478|ref|NP_375011.1| DNA ligase (polydeoxyribonucleotide syntase) [Staphylococcus aureus
subsp. aureus N315]
gi|148268377|ref|YP_001247320.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus JH9]
gi|150394439|ref|YP_001317114.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus JH1]
gi|156980220|ref|YP_001442479.1| DNA ligase [Staphylococcus aureus subsp. aureus Mu3]
gi|253316913|ref|ZP_04840126.1| DNA ligase [Staphylococcus aureus subsp. aureus str. CF-Marseille]
gi|255006691|ref|ZP_05145292.2| DNA ligase [Staphylococcus aureus subsp. aureus Mu50-omega]
gi|258408884|ref|ZP_05681166.1| DNA ligase [Staphylococcus aureus A9763]
gi|258430016|ref|ZP_05688386.1| DNA ligase [Staphylococcus aureus A9299]
gi|258443466|ref|ZP_05691808.1| DNA ligase [Staphylococcus aureus A8115]
gi|258445324|ref|ZP_05693515.1| DNA ligase [Staphylococcus aureus A6300]
gi|258447888|ref|ZP_05696022.1| DNA ligase [Staphylococcus aureus A6224]
gi|258453321|ref|ZP_05701306.1| DNA ligase [Staphylococcus aureus A5937]
gi|269203557|ref|YP_003282826.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
ED98]
gi|282894571|ref|ZP_06302799.1| DNA ligase, NAD-dependent [Staphylococcus aureus A8117]
gi|282928077|ref|ZP_06335684.1| DNA ligase, NAD-dependent [Staphylococcus aureus A10102]
gi|295407285|ref|ZP_06817084.1| DNA ligase [Staphylococcus aureus A8819]
gi|296275664|ref|ZP_06858171.1| DNA ligase [Staphylococcus aureus subsp. aureus MR1]
gi|297246190|ref|ZP_06930041.1| DNA ligase [Staphylococcus aureus A8796]
gi|81705420|sp|Q7A4Q5|DNLJ_STAAN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|81781309|sp|Q99SY3|DNLJ_STAAM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|166216246|sp|A7X432|DNLJ_STAA1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|190359291|sp|A6U309|DNLJ_STAA2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|190359292|sp|A5IU71|DNLJ_STAA9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|13701697|dbj|BAB42990.1| DNA ligase [Staphylococcus aureus subsp. aureus N315]
gi|14247676|dbj|BAB58066.1| DNA ligase [Staphylococcus aureus subsp. aureus Mu50]
gi|147741446|gb|ABQ49744.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus JH9]
gi|149946891|gb|ABR52827.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus JH1]
gi|156722355|dbj|BAF78772.1| DNA ligase [Staphylococcus aureus subsp. aureus Mu3]
gi|257840331|gb|EEV64793.1| DNA ligase [Staphylococcus aureus A9763]
gi|257849610|gb|EEV73578.1| DNA ligase [Staphylococcus aureus A9299]
gi|257851351|gb|EEV75291.1| DNA ligase [Staphylococcus aureus A8115]
gi|257855842|gb|EEV78766.1| DNA ligase [Staphylococcus aureus A6300]
gi|257858820|gb|EEV81689.1| DNA ligase [Staphylococcus aureus A6224]
gi|257864529|gb|EEV87272.1| DNA ligase [Staphylococcus aureus A5937]
gi|262075847|gb|ACY11820.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
ED98]
gi|282590141|gb|EFB95222.1| DNA ligase, NAD-dependent [Staphylococcus aureus A10102]
gi|282763058|gb|EFC03190.1| DNA ligase, NAD-dependent [Staphylococcus aureus A8117]
gi|285817585|gb|ADC38072.1| DNA ligase [Staphylococcus aureus 04-02981]
gi|294967860|gb|EFG43890.1| DNA ligase [Staphylococcus aureus A8819]
gi|297176897|gb|EFH36154.1| DNA ligase [Staphylococcus aureus A8796]
gi|312830277|emb|CBX35119.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
ECT-R 2]
gi|315129286|gb|EFT85280.1| DNA ligase [Staphylococcus aureus subsp. aureus CGS03]
gi|329724802|gb|EGG61306.1| DNA ligase (NAD+) [Staphylococcus aureus subsp. aureus 21172]
Length = 667
Score = 81.8 bits (201), Expect = 2e-14, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 25/58 (43%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
V L + + YY DNP D YD++ L ++E+ PE D P VG
Sbjct: 6 SRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTVDSPTVRVG 63
>gi|324993931|gb|EGC25850.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK405]
gi|324994750|gb|EGC26663.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK678]
gi|327463193|gb|EGF09514.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK1]
Length = 652
Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV++ + YY D P +D YDR+ L L+E++P D P + VG
Sbjct: 2 KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDILPDSPTHRVG 60
>gi|313674932|ref|YP_004052928.1| DNA ligase, nad-dependent [Marivirga tractuosa DSM 4126]
gi|312941630|gb|ADR20820.1| DNA ligase, NAD-dependent [Marivirga tractuosa DSM 4126]
Length = 671
Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 32/65 (49%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K A +++ L + ++ YY+ +D +D + + L L+E+FP+L D P
Sbjct: 1 MEKKAAEQKIQELSEKLHYYNYKYYQESVSEISDYEFDMMLKELIELEEKFPDLKTSDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SQRVG 65
>gi|283471175|emb|CAQ50386.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
ST398]
Length = 667
Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 25/58 (43%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
V L + + YY DNP D YD++ L ++E+ PE D P VG
Sbjct: 6 SRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTVDSPTVRVG 63
>gi|323344237|ref|ZP_08084463.1| NAD-dependent DNA ligase LigA [Prevotella oralis ATCC 33269]
gi|323094966|gb|EFZ37541.1| NAD-dependent DNA ligase LigA [Prevotella oralis ATCC 33269]
Length = 665
Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 27/59 (45%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L + H YY L+ P +D +D + L L+ ++P++ D + P VG
Sbjct: 4 KQRISELRQQLHEHNYKYYVLNAPTISDQAFDFMMHELQDLEAKYPKMDDPNSPTKRVG 62
>gi|15807063|ref|NP_295792.1| DNA ligase [Deinococcus radiodurans R1]
gi|81550876|sp|Q9RSQ5|DNLJ_DEIRA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|6459863|gb|AAF11619.1|AE002043_4 DNA ligase [Deinococcus radiodurans R1]
Length = 700
Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 24/53 (45%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L H + YY D P D YDR++ L L+ PE D+ P TVG
Sbjct: 21 LRDEVALHNRAYYEQDAPTIPDDEYDRLARELRELEAAHPEFADDHSPVQTVG 73
>gi|325696052|gb|EGD37943.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK160]
Length = 652
Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV++ + YY D P +D YDR+ L L+E++P D P + VG
Sbjct: 2 KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDILPDSPTHRVG 60
>gi|291166519|gb|EFE28565.1| DNA ligase, NAD-dependent [Filifactor alocis ATCC 35896]
Length = 668
Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 32/61 (52%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+A +++ L + ++ YY+ D P +D YD + + L +L+++ P L + P V
Sbjct: 2 DAEKKIKLLRERLEYYSAKYYQEDAPEISDAEYDSMMKELMSLEKEHPSLRSAESPSEKV 61
Query: 118 G 118
G
Sbjct: 62 G 62
>gi|83312957|ref|YP_423221.1| NAD-dependent DNA ligase [Magnetospirillum magneticum AMB-1]
gi|123726860|sp|Q2W0G3|DNLJ_MAGMM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|82947798|dbj|BAE52662.1| NAD-dependent DNA ligase [Magnetospirillum magneticum AMB-1]
Length = 698
Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
V +L+ EA IE LV+ + Y+ D P D +YD RL ++ +FPEL
Sbjct: 3 PVEALTPFEARIEHAELVETIARWDEAYHAKDAPEVPDDVYDGAKRRLARIEGRFPEL-A 61
Query: 110 EDHPWN-TVG 118
P VG
Sbjct: 62 AKSPIRDKVG 71
>gi|332366947|gb|EGJ44687.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK1059]
Length = 652
Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV++ + YY D P +D YDR+ L L+E++P D P + VG
Sbjct: 2 KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDILPDSPTHRVG 60
>gi|91216495|ref|ZP_01253461.1| DNA ligase [Psychroflexus torquis ATCC 700755]
gi|91185289|gb|EAS71666.1| DNA ligase [Psychroflexus torquis ATCC 700755]
Length = 667
Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 26/60 (43%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++E L + H YY LD P +D +D L L++ PE D + P VG
Sbjct: 3 IQDQIENLRQELHEHNYKYYVLDAPEISDYDFDMKLNALQELEKTHPEYKDPNSPTMRVG 62
>gi|325690880|gb|EGD32881.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK115]
Length = 652
Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV++ + YY D P +D YDR+ L L+E++P D P + VG
Sbjct: 2 KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDILPDSPTHRVG 60
>gi|257053690|ref|YP_003131523.1| NAD-dependent DNA ligase LigA [Halorhabdus utahensis DSM 12940]
gi|256692453|gb|ACV12790.1| DNA ligase, NAD-dependent [Halorhabdus utahensis DSM 12940]
Length = 693
Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 36 PNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSE 95
P+ +E+ + V +L A + E L + +H YY ++P+ D YD +
Sbjct: 7 PDNPYVENPPTDFESVDALDAESAHEQAEQLREAIRYHDHQYYVENDPVIGDRTYDALFA 66
Query: 96 RLDALQEQFPELFDEDHPWNTVG 118
RL L++ F L E+ P VG
Sbjct: 67 RLQDLEDGF-GLDRENSPTQRVG 88
>gi|325687188|gb|EGD29210.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK72]
Length = 652
Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV++ + YY D P +D YDR+ L L+E++P D P + VG
Sbjct: 2 KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDILPDSPTHRVG 60
>gi|228476354|ref|ZP_04061055.1| DNA ligase, NAD-dependent [Staphylococcus hominis SK119]
gi|228269637|gb|EEK11143.1| DNA ligase, NAD-dependent [Staphylococcus hominis SK119]
Length = 667
Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 25/60 (41%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
V L + + YY DNP D YD++ L ++ PEL +D P VG
Sbjct: 4 IQNRVNELHDLLNQYSYEYYVKDNPSVPDSEYDKLLRELIDIENAHPELKTDDSPTVRVG 63
>gi|327470726|gb|EGF16182.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK330]
Length = 652
Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV++ + YY D P +D YDR+ L L+E++P D P + VG
Sbjct: 2 KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDILPDSPTHRVG 60
>gi|324991571|gb|EGC23504.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK353]
Length = 652
Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV++ + YY D P +D YDR+ L L+E++P D P + VG
Sbjct: 2 KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDILPDSPTHRVG 60
>gi|314936043|ref|ZP_07843392.1| DNA ligase, NAD-dependent [Staphylococcus hominis subsp. hominis
C80]
gi|313655860|gb|EFS19603.1| DNA ligase, NAD-dependent [Staphylococcus hominis subsp. hominis
C80]
Length = 667
Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 25/60 (41%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
V L + + YY DNP D YD++ L ++ PEL +D P VG
Sbjct: 4 IQNRVNELHDLLNQYSYEYYVKDNPSVPDSEYDKLLRELIDIENAHPELKTDDSPTVRVG 63
>gi|332361975|gb|EGJ39777.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK49]
Length = 652
Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV++ + YY D P +D YDR+ L L+E++P D P + VG
Sbjct: 2 KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDILPDSPTHRVG 60
>gi|323351288|ref|ZP_08086944.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis VMC66]
gi|322122512|gb|EFX94223.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis VMC66]
Length = 652
Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV++ + YY D P +D YDR+ L L+E++P D P + VG
Sbjct: 2 KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDILPDSPTHRVG 60
>gi|125718295|ref|YP_001035428.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK36]
gi|166216249|sp|A3CNX3|DNLJ_STRSV RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|125498212|gb|ABN44878.1| DNA ligase, putative [Streptococcus sanguinis SK36]
Length = 652
Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV++ + YY D P +D YDR+ L L+E++P D P + VG
Sbjct: 2 KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDILPDSPTHRVG 60
>gi|289435095|ref|YP_003464967.1| DNA ligase, NAD-dependent [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|289171339|emb|CBH27881.1| DNA ligase, NAD-dependent [Listeria seeligeri serovar 1/2b str.
SLCC3954]
Length = 671
Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 25/59 (42%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E L+ I + YY +DNP D YD+ + L ++ PE + P VG
Sbjct: 4 KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLQIEAAHPEWVTPESPSKRVG 62
>gi|282917251|ref|ZP_06325006.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
D139]
gi|283771054|ref|ZP_06343945.1| DNA ligase [Staphylococcus aureus subsp. aureus H19]
gi|282318878|gb|EFB49233.1| DNA ligase, NAD-dependent [Staphylococcus aureus subsp. aureus
D139]
gi|283459648|gb|EFC06739.1| DNA ligase [Staphylococcus aureus subsp. aureus H19]
Length = 667
Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 25/58 (43%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
V L + + YY DNP D YD++ L ++E+ PE D P VG
Sbjct: 6 SRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELINIEEEHPEYKTVDSPTVRVG 63
>gi|327489925|gb|EGF21714.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK1058]
Length = 652
Score = 81.4 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV++ + YY D P +D YDR+ L L+E++P D P + VG
Sbjct: 2 KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDILPDSPTHRVG 60
>gi|251782129|ref|YP_002996431.1| NAD-dependent DNA ligase LigA [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|242390758|dbj|BAH81217.1| NAD-dependent DNA ligase [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
Length = 652
Score = 81.4 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L ++ +++ YY D+P +D YD++ L L+ Q+PE +D P VG
Sbjct: 2 KKRIRELTELLNRYRQEYYTNDSPSVSDSEYDKLYRELVDLENQYPEHVLQDSPTQNVG 60
>gi|225155696|ref|ZP_03724184.1| DNA ligase (NAD(+)) [Opitutaceae bacterium TAV2]
gi|224803490|gb|EEG21725.1| DNA ligase (NAD(+)) [Opitutaceae bacterium TAV2]
Length = 761
Score = 81.4 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 54 LSKGEA--MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
++ E + + L H + YYR P +D YDR+ L L+ Q P+L D
Sbjct: 1 MTPAEPTPVQRIANLRAELARHDELYYRAARPEISDYDYDRLKRELANLESQHPQLDLGD 60
Query: 112 HPWNTVG 118
P +G
Sbjct: 61 SPTLRIG 67
>gi|327461089|gb|EGF07422.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK1057]
Length = 652
Score = 81.4 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV++ + YY D P +D YDR+ L L+E++P D P + VG
Sbjct: 2 KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDILPDSPTHRVG 60
>gi|319955749|ref|YP_004167016.1| DNA ligase [Cellulophaga algicola DSM 14237]
gi|319424409|gb|ADV51518.1| DNA ligase [Cellulophaga algicola DSM 14237]
Length = 666
Score = 81.4 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 29/61 (47%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E+ ++E L H YY LD P +D +D + L L+E+ PE +D P V
Sbjct: 2 ESKQKIEALRIGLREHNYNYYVLDTPTISDYDFDMQLKELQDLEEKHPEFYDATSPSLRV 61
Query: 118 G 118
G
Sbjct: 62 G 62
>gi|146329194|ref|YP_001209306.1| DNA ligase, NAD-dependent [Dichelobacter nodosus VCS1703A]
gi|166215582|sp|A5EVZ5|DNLJ_DICNV RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|146232664|gb|ABQ13642.1| DNA ligase, NAD-dependent [Dichelobacter nodosus VCS1703A]
Length = 678
Score = 81.4 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 26/60 (43%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E+E L + H+ YY L+ P D +D + ++L AL+ D P VG
Sbjct: 8 IAAELEALRQTIRAHEYAYYVLEAPNIADSEFDALMQKLRALEAASGLPIPADSPTQRVG 67
>gi|15900984|ref|NP_345588.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae TIGR4]
gi|81531953|sp|Q97QT2|DNLJ_STRPN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|14972593|gb|AAK75228.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae TIGR4]
Length = 652
Score = 81.4 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 27/58 (46%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV + + YY DNP +D YDR+ L L+ +PE D P + VG
Sbjct: 3 KRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPTHRVG 60
>gi|294789790|ref|ZP_06755020.1| DNA ligase, NAD-dependent [Simonsiella muelleri ATCC 29453]
gi|294482296|gb|EFG29993.1| DNA ligase, NAD-dependent [Simonsiella muelleri ATCC 29453]
Length = 798
Score = 81.4 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 24/53 (45%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L + + YY LD P D YDR+ L+AL+ +P + P VG
Sbjct: 14 LTEKLNRYAHEYYTLDAPSVPDSEYDRLYRELEALEMAYPTFRLPESPTQRVG 66
>gi|323126984|gb|ADX24281.1| NAD-dependent DNA ligase LigA [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
Length = 652
Score = 81.4 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L ++ +++ YY D+P +D YD++ L L+ Q+PE +D P VG
Sbjct: 2 KKRIRELTELLNRYRQEYYTNDSPSVSDSEYDKLYRELVDLENQYPEHVLQDSPTQNVG 60
>gi|332665881|ref|YP_004448669.1| DNA ligase [Haliscomenobacter hydrossis DSM 1100]
gi|332334695|gb|AEE51796.1| DNA ligase [Haliscomenobacter hydrossis DSM 1100]
Length = 711
Score = 81.4 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 31/58 (53%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+ L + ++H+ YY ++P+ +D YD++ + L+ L+E PEL D P V
Sbjct: 30 AQQHAELCGLIIYHEWRYYIQNDPVLSDYEYDQLFKLLERLEEVHPELVSADSPSQRV 87
>gi|38233671|ref|NP_939438.1| NAD-dependent DNA ligase LigA [Corynebacterium diphtheriae NCTC
13129]
gi|81401524|sp|Q6NHQ4|DNLJ_CORDI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|38199932|emb|CAE49600.1| DNA ligase [Corynebacterium diphtheriae]
Length = 677
Score = 81.4 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
+ + + + L + HH+ YY P +D +D++ +L L+++ PEL + P
Sbjct: 4 NFADLRRQWDDLAEQVRHHRDAYYNH-TPEISDAEFDQLFRQLQQLEQEHPELAVPESPT 62
Query: 115 NTVG 118
VG
Sbjct: 63 LRVG 66
>gi|304436815|ref|ZP_07396781.1| NAD-dependent DNA ligase LigA [Selenomonas sp. oral taxon 149 str.
67H29BP]
gi|304370187|gb|EFM23846.1| NAD-dependent DNA ligase LigA [Selenomonas sp. oral taxon 149 str.
67H29BP]
Length = 677
Score = 81.4 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 29/62 (46%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
E E+ L + + K YY + +D +D + RL L+ +PEL ++ P T
Sbjct: 5 DEVKTELSELRRKIRKYSKQYYDDNESEISDYDFDMLMMRLKKLEAAYPELITKNSPTRT 64
Query: 117 VG 118
VG
Sbjct: 65 VG 66
>gi|163788595|ref|ZP_02183040.1| putative DNA ligase [Flavobacteriales bacterium ALC-1]
gi|159875832|gb|EDP69891.1| putative DNA ligase [Flavobacteriales bacterium ALC-1]
Length = 664
Score = 81.4 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 29/59 (49%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++E L + H YY LDN +D +D + L AL+E PE FD + P VG
Sbjct: 4 KQKIEILREELRQHNYNYYILDNATISDYEFDIKLKELQALEEANPEFFDPNSPTQRVG 62
>gi|167763098|ref|ZP_02435225.1| hypothetical protein BACSTE_01465 [Bacteroides stercoris ATCC
43183]
gi|167699438|gb|EDS16017.1| hypothetical protein BACSTE_01465 [Bacteroides stercoris ATCC
43183]
Length = 665
Score = 81.4 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 27/60 (45%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L H YY L+ P +D +D L L+++ PE D++ P VG
Sbjct: 3 VKEKIDQLRADLHRHNYNYYVLNAPEISDKEFDDRMRELQELEKEHPEYQDDNSPTMRVG 62
>gi|329954852|ref|ZP_08295869.1| DNA ligase [Bacteroides clarus YIT 12056]
gi|328526956|gb|EGF53967.1| DNA ligase [Bacteroides clarus YIT 12056]
Length = 665
Score = 81.4 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 27/60 (45%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L H YY L+ P +D +D L L+++ PE DE+ P VG
Sbjct: 3 IKEKIDQLRADLHRHNYNYYVLNTPEISDKEFDDRMRELQELEKEHPEYQDENSPTMRVG 62
>gi|322392021|ref|ZP_08065484.1| NAD-dependent DNA ligase LigA [Streptococcus peroris ATCC 700780]
gi|321145119|gb|EFX40517.1| NAD-dependent DNA ligase LigA [Streptococcus peroris ATCC 700780]
Length = 652
Score = 81.4 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 28/58 (48%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV++ + YY DNP +D YDR+ L L++ PE + P + VG
Sbjct: 3 ERMNELVELLNRYATEYYTSDNPSVSDSEYDRLYRELVELEQAHPEQVLPNSPTHRVG 60
>gi|227501728|ref|ZP_03931777.1| NAD-dependent DNA ligase LigA [Corynebacterium accolens ATCC 49725]
gi|227077753|gb|EEI15716.1| NAD-dependent DNA ligase LigA [Corynebacterium accolens ATCC 49725]
Length = 680
Score = 81.4 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E L + H+ YY + P D +D + +RL L++Q PEL D P VG
Sbjct: 2 QREWNDLAQEVRRHRNLYYNGE-PAIPDADFDALFQRLMDLEKQHPELAVPDSPTQQVG 59
>gi|116074145|ref|ZP_01471407.1| DNA ligase [Synechococcus sp. RS9916]
gi|116069450|gb|EAU75202.1| DNA ligase [Synechococcus sp. RS9916]
Length = 691
Score = 81.4 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ A + L + YY LD P+ D +YDR+ L L+ P L D P
Sbjct: 1 MTAASAQ-RAQELRGLLNTAAHAYYVLDAPVMEDPVYDRLYRELLELESADPSLVTVDSP 59
Query: 114 WNTVG 118
VG
Sbjct: 60 TQRVG 64
>gi|169834268|ref|YP_001694538.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae
Hungary19A-6]
gi|254781426|sp|B1IBQ3|DNLJ_STRPI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|168996770|gb|ACA37382.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae Hungary19A-6]
Length = 652
Score = 81.4 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 27/58 (46%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV + + YY DNP +D YDR+ L L+ +PE D P + VG
Sbjct: 3 KRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPTHRVG 60
>gi|149012887|ref|ZP_01833800.1| DNA ligase [Streptococcus pneumoniae SP19-BS75]
gi|182684133|ref|YP_001835880.1| DNA ligase [Streptococcus pneumoniae CGSP14]
gi|254781428|sp|B2IPZ1|DNLJ_STRPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|147763176|gb|EDK70116.1| DNA ligase [Streptococcus pneumoniae SP19-BS75]
gi|182629467|gb|ACB90415.1| DNA ligase [Streptococcus pneumoniae CGSP14]
gi|301801994|emb|CBW34723.1| DNA ligase [Streptococcus pneumoniae INV200]
Length = 652
Score = 81.4 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 27/58 (46%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV + + YY DNP +D YDR+ L L+ +PE D P + VG
Sbjct: 3 KRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPTHRVG 60
>gi|313632855|gb|EFR99806.1| DNA ligase, NAD-dependent [Listeria seeligeri FSL N1-067]
Length = 678
Score = 81.4 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 25/59 (42%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E L+ I + YY +DNP D YD+ + L ++ PE + P VG
Sbjct: 11 KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLQIEAAHPEWITPESPSKRVG 69
>gi|330984116|gb|EGH82219.1| DNA ligase, NAD-dependent [Pseudomonas syringae pv. lachrymans str.
M301315]
Length = 675
Score = 81.4 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 23/57 (40%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L + H Y+ LD P TD Y+ + + L A++ P D P +G
Sbjct: 6 RAAELRHLIDHANYRYHVLDEPTITDNEYNALFQELLAIEAADPTQQTPDSPTQKIG 62
>gi|77414096|ref|ZP_00790264.1| DNA ligase, NAD-dependent [Streptococcus agalactiae 515]
gi|77159848|gb|EAO70991.1| DNA ligase, NAD-dependent [Streptococcus agalactiae 515]
Length = 648
Score = 81.4 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV + + K YY DNP +D YD++ L L+EQ PE + P + VG
Sbjct: 1 MNELVSLLNQYAKEYYTQDNPTVSDSQYDQLYRELVELEEQHPENILPNSPTHRVG 56
>gi|168486469|ref|ZP_02710977.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC1087-00]
gi|183570508|gb|EDT91036.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC1087-00]
Length = 652
Score = 81.4 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 27/58 (46%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV + + YY DNP +D YDR+ L L+ +PE D P + VG
Sbjct: 3 KRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPTHRVG 60
>gi|149024919|ref|ZP_01836320.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP23-BS72]
gi|303259779|ref|ZP_07345754.1| DNA ligase [Streptococcus pneumoniae SP-BS293]
gi|303262954|ref|ZP_07348889.1| DNA ligase [Streptococcus pneumoniae SP14-BS292]
gi|303264916|ref|ZP_07350832.1| DNA ligase [Streptococcus pneumoniae BS397]
gi|303266897|ref|ZP_07352775.1| DNA ligase [Streptococcus pneumoniae BS457]
gi|303268933|ref|ZP_07354718.1| DNA ligase [Streptococcus pneumoniae BS458]
gi|147929542|gb|EDK80536.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP23-BS72]
gi|301794230|emb|CBW36650.1| DNA ligase [Streptococcus pneumoniae INV104]
gi|302635931|gb|EFL66431.1| DNA ligase [Streptococcus pneumoniae SP14-BS292]
gi|302638984|gb|EFL69444.1| DNA ligase [Streptococcus pneumoniae SP-BS293]
gi|302641551|gb|EFL71913.1| DNA ligase [Streptococcus pneumoniae BS458]
gi|302643595|gb|EFL73864.1| DNA ligase [Streptococcus pneumoniae BS457]
gi|302645604|gb|EFL75835.1| DNA ligase [Streptococcus pneumoniae BS397]
gi|332202976|gb|EGJ17044.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae GA47901]
Length = 652
Score = 81.4 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 27/58 (46%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV + + YY DNP +D YDR+ L L+ +PE D P + VG
Sbjct: 3 KRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPTHRVG 60
>gi|148986045|ref|ZP_01819066.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP3-BS71]
gi|147921879|gb|EDK73005.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP3-BS71]
gi|301800082|emb|CBW32679.1| DNA ligase [Streptococcus pneumoniae OXC141]
Length = 652
Score = 81.4 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 27/58 (46%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV + + YY DNP +D YDR+ L L+ +PE D P + VG
Sbjct: 3 KRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPTHRVG 60
>gi|148994566|ref|ZP_01823725.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP9-BS68]
gi|168488962|ref|ZP_02713161.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP195]
gi|147927160|gb|EDK78197.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP9-BS68]
gi|183572496|gb|EDT93024.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP195]
gi|332073479|gb|EGI83958.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae GA17570]
Length = 652
Score = 81.4 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 27/58 (46%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV + + YY DNP +D YDR+ L L+ +PE D P + VG
Sbjct: 3 KRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPTHRVG 60
>gi|149003762|ref|ZP_01828594.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP14-BS69]
gi|237650785|ref|ZP_04525037.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae CCRI 1974]
gi|237822373|ref|ZP_04598218.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae CCRI
1974M2]
gi|147758208|gb|EDK65210.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP14-BS69]
Length = 652
Score = 81.4 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 27/58 (46%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV + + YY DNP +D YDR+ L L+ +PE D P + VG
Sbjct: 3 KRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPTHRVG 60
>gi|225858927|ref|YP_002740437.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae 70585]
gi|254781425|sp|C1C7B1|DNLJ_STRP7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|225720821|gb|ACO16675.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae 70585]
Length = 652
Score = 81.1 bits (199), Expect = 4e-14, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 27/58 (46%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV + + YY DNP +D YDR+ L L+ +PE D P + VG
Sbjct: 3 KRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPTHRVG 60
>gi|149006206|ref|ZP_01829918.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP18-BS74]
gi|225856757|ref|YP_002738268.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae P1031]
gi|307127352|ref|YP_003879383.1| NAD-dependent DNA ligase [Streptococcus pneumoniae 670-6B]
gi|254781432|sp|C1CKI0|DNLJ_STRZP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|147761983|gb|EDK68945.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP18-BS74]
gi|225725530|gb|ACO21382.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae P1031]
gi|306484414|gb|ADM91283.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae 670-6B]
gi|332075451|gb|EGI85920.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae GA41301]
Length = 652
Score = 81.1 bits (199), Expect = 4e-14, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 27/58 (46%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV + + YY DNP +D YDR+ L L+ +PE D P + VG
Sbjct: 3 KRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPTHRVG 60
>gi|148998387|ref|ZP_01825829.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP11-BS70]
gi|168576158|ref|ZP_02722052.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae MLV-016]
gi|194398076|ref|YP_002037745.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae G54]
gi|225861080|ref|YP_002742589.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae
Taiwan19F-14]
gi|298230922|ref|ZP_06964603.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae str. Canada
MDR_19F]
gi|298254162|ref|ZP_06977748.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae str. Canada
MDR_19A]
gi|298502866|ref|YP_003724806.1| DNA ligase (NAD(+)) [Streptococcus pneumoniae TCH8431/19A]
gi|254781424|sp|B5E4M9|DNLJ_STRP4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254781433|sp|C1CRL7|DNLJ_STRZT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|147755784|gb|EDK62829.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae SP11-BS70]
gi|183577935|gb|EDT98463.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae MLV-016]
gi|194357743|gb|ACF56191.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae G54]
gi|225727034|gb|ACO22885.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae Taiwan19F-14]
gi|298238461|gb|ADI69592.1| DNA ligase (NAD(+)) [Streptococcus pneumoniae TCH8431/19A]
gi|327389325|gb|EGE87670.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae GA04375]
gi|332075071|gb|EGI85542.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae GA17545]
Length = 652
Score = 81.1 bits (199), Expect = 4e-14, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 27/58 (46%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV + + YY DNP +D YDR+ L L+ +PE D P + VG
Sbjct: 3 KRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPTHRVG 60
>gi|254564006|ref|YP_003071101.1| DNA ligase [Methylobacterium extorquens DM4]
gi|254271284|emb|CAX27296.1| DNA ligase, NAD(+)-dependent [Methylobacterium extorquens DM4]
Length = 814
Score = 81.1 bits (199), Expect = 4e-14, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 48 AKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
+ V +LS+ A L + + YY D P TD YD + + L+A++ +FP L
Sbjct: 7 SAAVEALSEDAAQARHAELSRAIERANQLYYNEDAPELTDAEYDALRQELEAIEARFPAL 66
>gi|15903068|ref|NP_358618.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae R6]
gi|116516470|ref|YP_816476.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae D39]
gi|81449679|sp|Q8DPS9|DNLJ_STRR6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|122278638|sp|Q04KH2|DNLJ_STRP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|15458641|gb|AAK99828.1| DNA ligase [Streptococcus pneumoniae R6]
gi|116077046|gb|ABJ54766.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae D39]
Length = 652
Score = 81.1 bits (199), Expect = 4e-14, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 27/58 (46%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV + + YY DNP +D YDR+ L L+ +PE D P + VG
Sbjct: 3 KRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPTHRVG 60
>gi|332291077|ref|YP_004429686.1| DNA ligase, NAD-dependent [Krokinobacter diaphorus 4H-3-7-5]
gi|332169163|gb|AEE18418.1| DNA ligase, NAD-dependent [Krokinobacter diaphorus 4H-3-7-5]
Length = 664
Score = 81.1 bits (199), Expect = 4e-14, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L H YY LD P +D +D+ ++L+AL+ PE D + P + VG
Sbjct: 3 IEEQILALRNELQSHNHSYYVLDTPTISDFDFDQKLKQLEALEAAHPEFDDPNSPTHRVG 62
>gi|332362528|gb|EGJ40328.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK1056]
Length = 652
Score = 81.1 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV++ + YY D P +D YDR+ L L+E++P D P + VG
Sbjct: 2 EERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEEKYPTDILPDSPTHRVG 60
>gi|322389291|ref|ZP_08062851.1| NAD-dependent DNA ligase LigA [Streptococcus parasanguinis ATCC
903]
gi|321144035|gb|EFX39453.1| NAD-dependent DNA ligase LigA [Streptococcus parasanguinis ATCC
903]
Length = 652
Score = 81.1 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 27/59 (45%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ LV++ + YY D P +D YD++ L L+ P+ + P + VG
Sbjct: 2 KTRMKELVELLNRYAYEYYTKDAPSVSDSEYDQLYRELVELETAHPDEILPESPTHRVG 60
>gi|229137130|ref|ZP_04265749.1| DNA ligase [Bacillus cereus BDRD-ST26]
gi|228646302|gb|EEL02517.1| DNA ligase [Bacillus cereus BDRD-ST26]
Length = 74
Score = 81.1 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK A +E L + Y+ LDNP +D YDR + L L+ + PE ED P
Sbjct: 1 MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SVRVG 65
>gi|255327262|ref|ZP_05368336.1| DNA ligase, NAD-dependent [Rothia mucilaginosa ATCC 25296]
gi|255295542|gb|EET74885.1| DNA ligase, NAD-dependent [Rothia mucilaginosa ATCC 25296]
Length = 735
Score = 81.1 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
A+ +++ E L ++ YY D P +D YD++ RL+ ++ + P
Sbjct: 12 PAENTAEITEA-LRAEYAELTDKIRAARRAYYNEDAPFLSDAEYDKLYRRLEIIEAEHPL 70
Query: 107 LFDEDHPWNTVG 118
+ D P VG
Sbjct: 71 IIANDSPTQEVG 82
>gi|238926785|ref|ZP_04658545.1| DNA ligase (NAD(+)) [Selenomonas flueggei ATCC 43531]
gi|238885317|gb|EEQ48955.1| DNA ligase (NAD(+)) [Selenomonas flueggei ATCC 43531]
Length = 677
Score = 81.1 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 29/62 (46%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
E E+ L + + K YY + +D +D + RL L+ +PEL ++ P T
Sbjct: 5 DEVKTELSELRRKIRKYSKQYYDDNESEISDYDFDMLMMRLKKLEAAYPELITKNSPTRT 64
Query: 117 VG 118
VG
Sbjct: 65 VG 66
>gi|161507068|ref|YP_001577022.1| DNA ligase [Lactobacillus helveticus DPC 4571]
gi|190359262|sp|A8YTZ3|DNLJ_LACH4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|160348057|gb|ABX26731.1| DNA ligase [Lactobacillus helveticus DPC 4571]
Length = 668
Score = 81.1 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 28/68 (41%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
+ ++ EA E L YY D P D +YD+ RL L++ FPE+
Sbjct: 1 MAKITLDEAKKEAASLRTKLDEWADAYYSKDAPEVEDNVYDQSYNRLLELEKAFPEIVTP 60
Query: 111 DHPWNTVG 118
D VG
Sbjct: 61 DSITQRVG 68
>gi|22537014|ref|NP_687865.1| NAD-dependent DNA ligase LigA [Streptococcus agalactiae 2603V/R]
gi|81454504|sp|Q8E084|DNLJ_STRA5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|22533870|gb|AAM99737.1|AE014230_17 DNA ligase, NAD-dependent [Streptococcus agalactiae 2603V/R]
Length = 652
Score = 81.1 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV + + K YY DNP +D YD++ L L++Q PE + P + VG
Sbjct: 2 ENRMNELVSLLNQYAKEYYTQDNPTVSDSQYDQLYRELVELEKQHPENILPNSPTHRVG 60
>gi|76787534|ref|YP_329595.1| NAD-dependent DNA ligase LigA [Streptococcus agalactiae A909]
gi|123771969|sp|Q3K1K8|DNLJ_STRA1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|76562591|gb|ABA45175.1| DNA ligase, NAD-dependent [Streptococcus agalactiae A909]
Length = 652
Score = 81.1 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV + + K YY DNP +D YD++ L L++Q PE + P + VG
Sbjct: 2 ENRMNELVSLLNQYAKEYYTQDNPTVSDSQYDQLYRELVELEKQHPENILPNSPTHRVG 60
>gi|114768813|ref|ZP_01446439.1| DNA ligase [alpha proteobacterium HTCC2255]
gi|114549730|gb|EAU52611.1| DNA ligase [alpha proteobacterium HTCC2255]
Length = 711
Score = 81.1 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 35/74 (47%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
+ + V L K +A E+ L +I YY D P+ +D YD + +R ++ +F
Sbjct: 1 MSEDHPVEKLDKMQAEKELIRLNEILDRANSDYYSNDAPILSDAEYDTLKKRNLDIESRF 60
Query: 105 PELFDEDHPWNTVG 118
P L ++ + +G
Sbjct: 61 PNLKLKNSVSDKIG 74
>gi|240141492|ref|YP_002965972.1| DNA ligase, NAD(+)-dependent [Methylobacterium extorquens AM1]
gi|240011469|gb|ACS42695.1| DNA ligase, NAD(+)-dependent [Methylobacterium extorquens AM1]
Length = 814
Score = 81.1 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 48 AKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
+ V +LS+ A L + + YY D P TD YD + + L+A++ +FP L
Sbjct: 7 SAAVEALSEDAAQARHAELSRAIERANQLYYNEDAPELTDAEYDALRQELEAIEARFPAL 66
>gi|325955534|ref|YP_004239194.1| DNA ligase [Weeksella virosa DSM 16922]
gi|323438152|gb|ADX68616.1| DNA ligase [Weeksella virosa DSM 16922]
Length = 663
Score = 81.1 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 26/59 (44%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L + H YY LD P +D +D + L L+++ PE D + P VG
Sbjct: 4 QQRILALREELHQHNYRYYVLDQPSISDFEFDLKLKELQKLEKEHPEFSDPNSPTVRVG 62
>gi|163854038|ref|YP_001642081.1| DNA ligase, NAD-dependent [Methylobacterium extorquens PA1]
gi|254781364|sp|A9VWA4|DNLJ_METEP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|163665643|gb|ABY33010.1| DNA ligase, NAD-dependent [Methylobacterium extorquens PA1]
Length = 814
Score = 81.1 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 48 AKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
+ V +LS+ A L + + YY D P TD YD + + L+A++ +FP L
Sbjct: 7 SAAVEALSEDAAQARHAELSRAIERANQLYYNEDAPELTDAEYDALRQELEAIEARFPAL 66
>gi|56460801|ref|YP_156082.1| NAD-dependent DNA ligase [Idiomarina loihiensis L2TR]
gi|81362279|sp|Q5QUK1|DNLJ_IDILO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|56179811|gb|AAV82533.1| NAD-dependent DNA ligase [Idiomarina loihiensis L2TR]
Length = 670
Score = 81.1 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 26/57 (45%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L ++ + + YY D P D YDR+ L L+ + P+L P VG
Sbjct: 8 RMQELEQLLNRYNQEYYENDEPSVPDAEYDRLFRELKTLETEHPDLKSAQSPTMKVG 64
>gi|284166901|ref|YP_003405180.1| DNA ligase, NAD-dependent [Haloterrigena turkmenica DSM 5511]
gi|284016556|gb|ADB62507.1| DNA ligase, NAD-dependent [Haloterrigena turkmenica DSM 5511]
Length = 692
Score = 81.1 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
V LS+ EA +VE L + H + YY +P+ D YD + RL L++ F
Sbjct: 19 DFAPVGELSEDEAREQVELLREAIREHDRRYYVESDPVIADRTYDALFARLRDLEDAF-G 77
Query: 107 LFDEDHPWNTVG 118
L D P +VG
Sbjct: 78 LEHPDSPTRSVG 89
>gi|144899097|emb|CAM75961.1| NAD-dependent DNA ligase [Magnetospirillum gryphiswaldense MSR-1]
Length = 693
Score = 81.1 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
++ +L+ EA IE L + + Y++ D P D YD RL A++ +FPEL
Sbjct: 4 EIDALTPFEARIEASALREKLIRWDLAYHQADAPEVDDATYDAAKLRLLAIEARFPEL-A 62
Query: 110 EDHPWNTVG 118
P +G
Sbjct: 63 AGSPTAKIG 71
>gi|227540068|ref|ZP_03970117.1| DNA ligase (NAD(+)) [Sphingobacterium spiritivorum ATCC 33300]
gi|227240084|gb|EEI90099.1| DNA ligase (NAD(+)) [Sphingobacterium spiritivorum ATCC 33300]
Length = 673
Score = 81.1 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 33/65 (50%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+S E ++ L + H+ YY L L +D +D+ + L+AL+ Q+P+ D + P
Sbjct: 1 MSAVEIQEKIAQLTQELNHYNYQYYVLAQSLISDYDFDQKLKELEALESQYPQFADPNSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TRRVG 65
>gi|300771799|ref|ZP_07081670.1| NAD-dependent DNA ligase LigA [Sphingobacterium spiritivorum ATCC
33861]
gi|300761185|gb|EFK58010.1| NAD-dependent DNA ligase LigA [Sphingobacterium spiritivorum ATCC
33861]
Length = 673
Score = 80.7 bits (198), Expect = 6e-14, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 33/65 (50%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+S E ++ L + H+ YY L L +D +D+ + L+AL+ Q+P+ D + P
Sbjct: 1 MSAVEIQEKIAQLTQELNHYNYQYYVLAQSLISDYDFDQKLKELEALESQYPQFADPNSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TRRVG 65
>gi|306825169|ref|ZP_07458511.1| NAD-dependent DNA ligase LigA [Streptococcus sp. oral taxon 071
str. 73H25AP]
gi|304432605|gb|EFM35579.1| NAD-dependent DNA ligase LigA [Streptococcus sp. oral taxon 071
str. 73H25AP]
Length = 652
Score = 80.7 bits (198), Expect = 6e-14, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV + + YY DNP +D YDR+ L L+ +P+ D P + VG
Sbjct: 3 ERMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELEAAYPDQVLADSPTHRVG 60
>gi|111658008|ref|ZP_01408712.1| hypothetical protein SpneT_02000805 [Streptococcus pneumoniae
TIGR4]
Length = 648
Score = 80.7 bits (198), Expect = 6e-14, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 27/56 (48%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV + + YY DNP +D YDR+ L L+ +PE D P + VG
Sbjct: 1 MNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPTHRVG 56
>gi|33864448|ref|NP_896008.1| NAD-dependent DNA ligase LigA [Prochlorococcus marinus str. MIT
9313]
gi|81576658|sp|Q7V3Z9|DNLJ_PROMM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|33641228|emb|CAE22358.1| NAD-dependent DNA ligase [Prochlorococcus marinus str. MIT 9313]
Length = 696
Score = 80.7 bits (198), Expect = 6e-14, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 52 TSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
TS++ + E+ L+ A H YY LD P D +YDR+ L L+ + L D
Sbjct: 4 TSITPPKRAAELRQLLNQAAH---SYYVLDTPTMEDAVYDRLYRELLNLEAKDSSLLTPD 60
Query: 112 HPWNTVG 118
P +G
Sbjct: 61 SPTQRIG 67
>gi|317051097|ref|YP_004112213.1| DNA ligase, NAD-dependent [Desulfurispirillum indicum S5]
gi|316946181|gb|ADU65657.1| DNA ligase, NAD-dependent [Desulfurispirillum indicum S5]
Length = 660
Score = 80.7 bits (198), Expect = 6e-14, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+S E ++ L + + YY L +P+ DG YD + L AL+ +FP+ D P
Sbjct: 1 MSAAE-RERIDQLTALLQKADEAYYTLADPIMGDGEYDGLYRELRALEARFPQYVHADSP 59
Query: 114 WNTVG 118
+G
Sbjct: 60 TRRIG 64
>gi|218532981|ref|YP_002423797.1| DNA ligase, NAD-dependent [Methylobacterium chloromethanicum CM4]
gi|254781363|sp|B7KU78|DNLJ_METC4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|218525284|gb|ACK85869.1| DNA ligase, NAD-dependent [Methylobacterium chloromethanicum CM4]
Length = 814
Score = 80.7 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
V +LS+ A L + + YY D P TD YD + + L+A++ +FP L
Sbjct: 10 VEALSEDAAQARHAELSRAIERANQLYYNEDAPELTDAEYDALRQELEAIEARFPAL 66
>gi|322375289|ref|ZP_08049802.1| DNA ligase, NAD-dependent [Streptococcus sp. C300]
gi|321279552|gb|EFX56592.1| DNA ligase, NAD-dependent [Streptococcus sp. C300]
Length = 652
Score = 80.7 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV + + YY DNP +D YDR+ L L+ +P+ D P + VG
Sbjct: 3 ERMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELEAAYPDQVLADSPTHRVG 60
>gi|222152820|ref|YP_002561997.1| NAD-dependent DNA ligase LigA [Streptococcus uberis 0140J]
gi|254781430|sp|B9DRS2|DNLJ_STRU0 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|222113633|emb|CAR41520.1| DNA ligase [Streptococcus uberis 0140J]
Length = 652
Score = 80.7 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L + +++ YY DNP +D YD++ L L++++PE +D P VG
Sbjct: 2 EKRIRELTSLLNQYRQEYYTNDNPSVSDQEYDKLYHELIDLEKEYPEYIQKDSPSQAVG 60
>gi|332200505|gb|EGJ14577.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae GA41317]
Length = 648
Score = 80.7 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 27/56 (48%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV + + YY DNP +D YDR+ L L+ +PE D P + VG
Sbjct: 1 MNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPTHRVG 56
>gi|219681449|ref|YP_002467834.1| DNA ligase (NAD+) [Buchnera aphidicola str. 5A (Acyrthosiphon
pisum)]
gi|257471124|ref|ZP_05635123.1| DNA ligase (NAD+) [Buchnera aphidicola str. LSR1 (Acyrthosiphon
pisum)]
gi|254781271|sp|B8D8M5|DNLJ_BUCA5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|219624292|gb|ACL30447.1| DNA ligase (NAD+) [Buchnera aphidicola str. 5A (Acyrthosiphon
pisum)]
Length = 675
Score = 80.7 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 31/59 (52%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++E L KI L ++ +Y+ L+ + +D YD + +L L+ + EL D P VG
Sbjct: 5 KDKIEKLRKILLKYEYFYHTLNQSIISDAEYDYLFRQLYELELKHKELIPSDSPTQKVG 63
>gi|327474802|gb|EGF20207.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK408]
Length = 652
Score = 80.3 bits (197), Expect = 7e-14, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 28/59 (47%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV++ + YY D P +D YDR+ L L++++P D P + VG
Sbjct: 2 KERMSELVELLNRYAHEYYTADRPSVSDSEYDRLYRELAELEKKYPTDILPDSPTHRVG 60
>gi|331266328|ref|YP_004325958.1| DNA ligase, NAD-dependent [Streptococcus oralis Uo5]
gi|326683000|emb|CBZ00617.1| DNA ligase, NAD-dependent [Streptococcus oralis Uo5]
Length = 652
Score = 80.3 bits (197), Expect = 7e-14, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV + + YY DNP +D YDR+ L L+ +P+ D P + VG
Sbjct: 3 ERMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELEAAYPDQVLADSPTHRVG 60
>gi|297191909|ref|ZP_06909307.1| DNA ligase [Streptomyces pristinaespiralis ATCC 25486]
gi|197721112|gb|EDY65020.1| DNA ligase [Streptomyces pristinaespiralis ATCC 25486]
Length = 736
Score = 80.3 bits (197), Expect = 7e-14, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 32/62 (51%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
+A E L + H+ YY D+P+ +D +D++ L+ L+E++PEL D P
Sbjct: 19 PAQAREEHALLAEQIEEHRFRYYVKDSPVISDAEFDKLLRELEGLEERYPELRTPDSPTQ 78
Query: 116 TV 117
V
Sbjct: 79 KV 80
>gi|55379625|ref|YP_137475.1| NAD-dependent DNA ligase LigA [Haloarcula marismortui ATCC 43049]
gi|74516349|sp|Q5UY84|DNLJ_HALMA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|55232350|gb|AAV47769.1| DNA ligase [Haloarcula marismortui ATCC 43049]
Length = 691
Score = 80.3 bits (197), Expect = 7e-14, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
+ V + A + + L + +H YY ++P+ D YD + RL L+ F
Sbjct: 19 DFESVEDVDAETAREQADQLREALRYHDYRYYVENDPVIGDRAYDALFSRLQRLESAF-N 77
Query: 107 LFDEDHPWNTVG 118
L + P VG
Sbjct: 78 LDTDGSPTQRVG 89
>gi|307067701|ref|YP_003876667.1| NAD-dependent DNA ligase (contains BRCT domain type II)
[Streptococcus pneumoniae AP200]
gi|306409238|gb|ADM84665.1| NAD-dependent DNA ligase (contains BRCT domain type II)
[Streptococcus pneumoniae AP200]
Length = 648
Score = 80.3 bits (197), Expect = 7e-14, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 27/56 (48%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV + + YY DNP +D YDR+ L L+ +PE D P + VG
Sbjct: 1 MNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPTHRVG 56
>gi|270292770|ref|ZP_06198981.1| DNA ligase, NAD-dependent [Streptococcus sp. M143]
gi|270278749|gb|EFA24595.1| DNA ligase, NAD-dependent [Streptococcus sp. M143]
Length = 652
Score = 80.3 bits (197), Expect = 8e-14, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV + + YY DNP +D YDR+ L L+ +P+ D P + VG
Sbjct: 3 KRMNELVALLNRYASEYYTSDNPSVSDSEYDRLYRELVELEAAYPDQVLADSPTHRVG 60
>gi|320094066|ref|ZP_08025884.1| NAD-dependent DNA ligase LigA [Actinomyces sp. oral taxon 178 str.
F0338]
gi|319979007|gb|EFW10532.1| NAD-dependent DNA ligase LigA [Actinomyces sp. oral taxon 178 str.
F0338]
Length = 776
Score = 80.3 bits (197), Expect = 8e-14, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 27/64 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S + LV ++ YY D P D YDR+ L+ ++ P+L D P
Sbjct: 6 SFDAIRSRYDQLVAAIEEARRAYYDRDAPTLADAEYDRLYRELEDIERAHPQLRGADSPT 65
Query: 115 NTVG 118
+VG
Sbjct: 66 LSVG 69
>gi|299820617|ref|ZP_07052507.1| NAD-dependent DNA ligase LigA [Listeria grayi DSM 20601]
gi|299818112|gb|EFI85346.1| NAD-dependent DNA ligase LigA [Listeria grayi DSM 20601]
Length = 674
Score = 80.3 bits (197), Expect = 8e-14, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 26/59 (44%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E L++ + YY DNP D +YD+ + L ++E P+ D P VG
Sbjct: 5 KKRYEALIEELNQYSYDYYVQDNPSVEDVVYDKAMQELLKIEEAHPDWITVDSPSQRVG 63
>gi|315613211|ref|ZP_07888121.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis ATCC 49296]
gi|315314773|gb|EFU62815.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis ATCC 49296]
Length = 652
Score = 80.3 bits (197), Expect = 8e-14, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV + + YY DNP +D YDR+ L L+ +P+ D P + VG
Sbjct: 3 ERMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELEAAYPDQVLADSPTHRVG 60
>gi|237807406|ref|YP_002891846.1| DNA ligase, NAD-dependent [Tolumonas auensis DSM 9187]
gi|237499667|gb|ACQ92260.1| DNA ligase, NAD-dependent [Tolumonas auensis DSM 9187]
Length = 686
Score = 80.3 bits (197), Expect = 8e-14, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 25/61 (40%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E + L ++ + YY D P D YDR+ L L+ P+ D + P V
Sbjct: 3 EIQSRMHALQQLLERYNTEYYLHDEPSVPDAEYDRLMNELRELEAANPQWLDVNSPTQRV 62
Query: 118 G 118
G
Sbjct: 63 G 63
>gi|195867759|ref|ZP_03079760.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 9 str.
ATCC 33175]
gi|195660614|gb|EDX53870.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 9 str.
ATCC 33175]
Length = 673
Score = 80.3 bits (197), Expect = 8e-14, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 26/62 (41%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ L + YY LD+P D +YD+V L L+ +P+ + P
Sbjct: 2 DRIKAKINELKQKLDQWNYEYYVLDDPSVPDHVYDQVMRELIELENAYPQFKTNNSPSVR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|213964541|ref|ZP_03392741.1| DNA ligase, NAD-dependent [Corynebacterium amycolatum SK46]
gi|213952734|gb|EEB64116.1| DNA ligase, NAD-dependent [Corynebacterium amycolatum SK46]
Length = 703
Score = 80.3 bits (197), Expect = 8e-14, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
+ + + + + L + YY P+ +D YD + +L L+EQ+P+L
Sbjct: 23 PASEPAPADVREKWQELATRIRDNAALYYTA-QPVISDAEYDEMFRQLQQLEEQWPDLVV 81
Query: 110 EDHPWNTVG 118
D P VG
Sbjct: 82 PDSPTQQVG 90
>gi|306829554|ref|ZP_07462744.1| NAD-dependent DNA ligase LigA [Streptococcus mitis ATCC 6249]
gi|304428640|gb|EFM31730.1| NAD-dependent DNA ligase LigA [Streptococcus mitis ATCC 6249]
Length = 652
Score = 80.3 bits (197), Expect = 9e-14, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV + + YY DNP +D YDR+ L L+ +P+ D P + VG
Sbjct: 3 KRMNELVALLNRYASEYYTSDNPSVSDSEYDRLYRELVELEAAYPDQVLADSPTHRVG 60
>gi|322411466|gb|EFY02374.1| NAD-dependent DNA ligase LigA [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
Length = 652
Score = 80.3 bits (197), Expect = 9e-14, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 30/59 (50%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ + ++ +++ YY D+P +D YD++ L L+ Q+PE +D P VG
Sbjct: 2 KKRIREVTELLNRYRQEYYTNDSPSVSDSEYDKLYRELVELENQYPEHVLQDSPTQNVG 60
>gi|189490484|ref|YP_001957054.1| putative DNA ligase [Pseudomonas phage 201phi2-1]
gi|164609549|gb|ABY63158.1| putative DNA ligase [Pseudomonas phage 201phi2-1]
Length = 695
Score = 80.3 bits (197), Expect = 9e-14, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
E + L K H+ YY LD + D LYD++ L L+++ PE D P TVG+
Sbjct: 6 EYDVLCKRIRHYNYMYYVLDISIIPDSLYDQLLISLKLLEKEHPEWVTRDSPTQTVGH 63
>gi|76798177|ref|ZP_00780429.1| DNA ligase, NAD-dependent [Streptococcus agalactiae 18RS21]
gi|77405561|ref|ZP_00782652.1| DNA ligase, NAD-dependent [Streptococcus agalactiae H36B]
gi|77410701|ref|ZP_00787060.1| DNA ligase, NAD-dependent [Streptococcus agalactiae CJB111]
gi|76586485|gb|EAO62991.1| DNA ligase, NAD-dependent [Streptococcus agalactiae 18RS21]
gi|77163237|gb|EAO74189.1| DNA ligase, NAD-dependent [Streptococcus agalactiae CJB111]
gi|77175868|gb|EAO78646.1| DNA ligase, NAD-dependent [Streptococcus agalactiae H36B]
Length = 648
Score = 80.3 bits (197), Expect = 9e-14, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV + + K YY DNP +D YD++ L L++Q PE + P + VG
Sbjct: 1 MNELVSLLNQYAKEYYTQDNPTVSDSQYDQLYRELVELEKQHPENILPNSPTHRVG 56
>gi|312867643|ref|ZP_07727849.1| DNA ligase (NAD+) [Streptococcus parasanguinis F0405]
gi|311096706|gb|EFQ54944.1| DNA ligase (NAD+) [Streptococcus parasanguinis F0405]
Length = 652
Score = 79.9 bits (196), Expect = 9e-14, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 27/59 (45%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ LV++ + YY D P +D YD++ L L+ P+ + P + VG
Sbjct: 2 KTRMKELVELLNRYAYEYYTKDTPSVSDSEYDQLYRELVELETAHPDEILPESPTHRVG 60
>gi|296876694|ref|ZP_06900742.1| NAD-dependent DNA ligase LigA [Streptococcus parasanguinis ATCC
15912]
gi|296432196|gb|EFH17995.1| NAD-dependent DNA ligase LigA [Streptococcus parasanguinis ATCC
15912]
Length = 652
Score = 79.9 bits (196), Expect = 9e-14, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 27/59 (45%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ LV++ + YY D P +D YD++ L L+ P+ + P + VG
Sbjct: 2 KTRMKELVELLNRYAYEYYTKDTPSVSDSEYDQLYRELVELETAHPDEILPESPTHRVG 60
>gi|12045108|ref|NP_072919.1| DNA ligase, NAD-dependent [Mycoplasma genitalium G37]
gi|1352291|sp|P47496|DNLJ_MYCGE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|3844852|gb|AAC71474.1| DNA ligase, NAD-dependent [Mycoplasma genitalium G37]
gi|166078824|gb|ABY79442.1| DNA ligase, NAD-dependent [synthetic Mycoplasma genitalium
JCVI-1.0]
Length = 659
Score = 79.9 bits (196), Expect = 9e-14, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 31/61 (50%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+ ++++ LV + ++ YY L PL D YD + + L L++ P+L D P V
Sbjct: 3 DVKLKIQQLVNLIKNYDYHYYVLSEPLIDDFEYDMLYKSLQQLEKDHPDLIQIDSPTQRV 62
Query: 118 G 118
G
Sbjct: 63 G 63
>gi|255660255|ref|ZP_05405664.1| DNA ligase, NAD-dependent [Mycoplasma genitalium G37]
Length = 658
Score = 79.9 bits (196), Expect = 9e-14, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 31/61 (50%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+ ++++ LV + ++ YY L PL D YD + + L L++ P+L D P V
Sbjct: 2 DVKLKIQQLVNLIKNYDYHYYVLSEPLIDDFEYDMLYKSLQQLEKDHPDLIQIDSPTQRV 61
Query: 118 G 118
G
Sbjct: 62 G 62
>gi|149275978|ref|ZP_01882123.1| DNA ligase [Pedobacter sp. BAL39]
gi|149233406|gb|EDM38780.1| DNA ligase [Pedobacter sp. BAL39]
Length = 671
Score = 79.9 bits (196), Expect = 9e-14, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 33/65 (50%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK E +++ LVK H YY L P D +DR L+ L++Q+PE D + P
Sbjct: 1 MSKNEVKDKMDALVKELNQHTYDYYVLAMPTIADYEFDRKLAALNKLEQQYPEYADPNSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQQVG 65
>gi|315660157|ref|ZP_07913014.1| NAD-dependent DNA ligase LigA [Staphylococcus lugdunensis M23590]
gi|315494838|gb|EFU83176.1| NAD-dependent DNA ligase LigA [Staphylococcus lugdunensis M23590]
Length = 667
Score = 79.9 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 23/57 (40%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
V L + + YY DNP D YD++ L ++ PE D P VG
Sbjct: 7 RVNELHDLLNQYSYEYYVQDNPSVPDSEYDKLLHELIQIEADHPEYKTTDSPTVRVG 63
>gi|325102906|ref|YP_004272560.1| DNA ligase, NAD-dependent [Pedobacter saltans DSM 12145]
gi|324971754|gb|ADY50738.1| DNA ligase, NAD-dependent [Pedobacter saltans DSM 12145]
Length = 670
Score = 79.9 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+S E +++ LV H YY+L P +D +D+ + L+ L+++ P D P
Sbjct: 1 MSLFEIKEKIDALVTELNRHNYNYYQLAMPTISDYEFDQKLKELEKLEQENPAFIRIDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQKVG 65
>gi|85713360|ref|ZP_01044373.1| NAD-dependent DNA ligase [Idiomarina baltica OS145]
gi|85692818|gb|EAQ30803.1| NAD-dependent DNA ligase [Idiomarina baltica OS145]
Length = 449
Score = 79.9 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 25/60 (41%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L + + K YY LD P D YD++ L L+ PEL + P VG
Sbjct: 7 VEQRMRELEQQLTRYNKEYYELDEPTIPDSEYDKLFRELQTLEANNPELKSQHSPTEKVG 66
>gi|313125027|ref|YP_004035291.1| DNA ligase, NAD-dependent [Halogeometricum borinquense DSM 11551]
gi|312291392|gb|ADQ65852.1| DNA ligase, NAD-dependent [Halogeometricum borinquense DSM 11551]
Length = 694
Score = 79.9 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
+ V SLS A E L + H YY +PL D YD + RL L++ F +
Sbjct: 23 DFEPVESLSAEAAEREARLLREAVREHDHRYYVAADPLVADRTYDALFNRLQELEDAF-D 81
Query: 107 LFDEDHPWNTVG 118
L DE P VG
Sbjct: 82 LDDESSPTRRVG 93
>gi|89891625|ref|ZP_01203129.1| DNA ligase [Flavobacteria bacterium BBFL7]
gi|89516172|gb|EAS18835.1| DNA ligase [Flavobacteria bacterium BBFL7]
Length = 684
Score = 79.9 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 27/59 (45%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L H YY DNP +D +D+ E+L L+ PE +D P VG
Sbjct: 4 KEQIQSLRDELREHNYNYYVNDNPTISDFEFDKKLEQLKTLEAAHPEFYDATSPSVRVG 62
>gi|289550377|ref|YP_003471281.1| DNA ligase [Staphylococcus lugdunensis HKU09-01]
gi|289179909|gb|ADC87154.1| DNA ligase [Staphylococcus lugdunensis HKU09-01]
Length = 667
Score = 79.9 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 23/57 (40%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
V L + + YY DNP D YD++ L ++ PE D P VG
Sbjct: 7 RVNELHDLLNQYSYEYYVQDNPSVPDSEYDKLLHELIQIEADHPEYKTTDSPTVRVG 63
>gi|163841673|ref|YP_001626078.1| NAD-dependent DNA ligase [Renibacterium salmoninarum ATCC 33209]
gi|190359277|sp|A9WTZ3|DNLJ_RENSM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|162955149|gb|ABY24664.1| NAD-dependent DNA ligase [Renibacterium salmoninarum ATCC 33209]
Length = 758
Score = 79.9 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 27/59 (45%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E LV+ H++ YY L +D +D + RL+ ++ PEL D P VG
Sbjct: 33 RAEYSKLVEDIRHYRFAYYNEAESLVSDAEFDVLFRRLEEIEALHPELISNDSPTQEVG 91
>gi|157150014|ref|YP_001450670.1| NAD-dependent DNA ligase LigA [Streptococcus gordonii str. Challis
substr. CH1]
gi|190359295|sp|A8AY10|DNLJ_STRGC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|157074808|gb|ABV09491.1| DNA ligase, NAD-dependent [Streptococcus gordonii str. Challis
substr. CH1]
Length = 652
Score = 79.9 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 28/59 (47%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV + + YY D P +D YD++ L +L+EQ+P + P + VG
Sbjct: 2 KDRMSELVSLLNRYAHEYYTKDAPSVSDSEYDQLYRELVSLEEQYPNEILPESPTHRVG 60
>gi|302336117|ref|YP_003801324.1| DNA ligase, NAD-dependent [Olsenella uli DSM 7084]
gi|301319957|gb|ADK68444.1| DNA ligase, NAD-dependent [Olsenella uli DSM 7084]
Length = 747
Score = 79.9 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 26/59 (44%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L +I YY LD+P TD +DR+ L AL+ PEL + +G
Sbjct: 45 VARAAELNRILSRAAYAYYALDDPEMTDAEFDRLLVELQALESAHPELVSPESYTQRIG 103
>gi|262282968|ref|ZP_06060735.1| NAD-dependent DNA ligase LigA [Streptococcus sp. 2_1_36FAA]
gi|262261220|gb|EEY79919.1| NAD-dependent DNA ligase LigA [Streptococcus sp. 2_1_36FAA]
Length = 652
Score = 79.9 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 28/59 (47%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV + + YY D P +D YD++ L +L+EQ+P + P + VG
Sbjct: 2 KDRMSELVSLLNRYAHEYYTKDAPSVSDSEYDQLYRELVSLEEQYPNEILPESPTHRVG 60
>gi|162448184|ref|YP_001621316.1| DNA ligase [Acholeplasma laidlawii PG-8A]
gi|190359222|sp|A9NHW0|DNLJ_ACHLI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|161986291|gb|ABX81940.1| DNA ligase, NAD-dependent [Acholeplasma laidlawii PG-8A]
Length = 659
Score = 79.9 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 28/61 (45%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+ ++ L K Y+ D P+ +D +YD + L L+ ++PE DE P +
Sbjct: 2 DIQTRIKELRKQINEANYLYHTKDQPIISDFVYDGLMRELIELETKYPEYDDETSPTKKI 61
Query: 118 G 118
G
Sbjct: 62 G 62
>gi|289168011|ref|YP_003446280.1| DNA ligase [Streptococcus mitis B6]
gi|288907578|emb|CBJ22415.1| DNA ligase [Streptococcus mitis B6]
Length = 652
Score = 79.9 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV + + YY DNP +D YDR+ L L+ +P+ D P + VG
Sbjct: 3 KRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPDQVLADSPTHRVG 60
>gi|166032192|ref|ZP_02235021.1| hypothetical protein DORFOR_01895 [Dorea formicigenerans ATCC
27755]
gi|166027915|gb|EDR46672.1| hypothetical protein DORFOR_01895 [Dorea formicigenerans ATCC
27755]
Length = 690
Score = 79.9 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
KK S+S + ++ LVK ++ YY D PL +D YDR+ + L L+EQ
Sbjct: 20 PQKKGDSMS----VKRIKNLVKQLNEYRHAYYNQDAPLVSDAEYDRLFDELKELEEQ-TG 74
Query: 107 LFDEDHPWNTVGY 119
+ P TVGY
Sbjct: 75 FILSNSPTQTVGY 87
>gi|307704876|ref|ZP_07641768.1| DNA ligase, NAD-dependent [Streptococcus mitis SK597]
gi|307621589|gb|EFO00634.1| DNA ligase, NAD-dependent [Streptococcus mitis SK597]
Length = 652
Score = 79.9 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV + + YY DNP +D YDR+ L L+ +P+ D P + VG
Sbjct: 3 KRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPDQVLADSPTHRVG 60
>gi|307708748|ref|ZP_07645210.1| DNA ligase, NAD-dependent [Streptococcus mitis NCTC 12261]
gi|307615114|gb|EFN94325.1| DNA ligase, NAD-dependent [Streptococcus mitis NCTC 12261]
Length = 652
Score = 79.9 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV + + YY DNP +D YDR+ L L+ +P+ D P + VG
Sbjct: 3 KRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPDQVLADSPTHRVG 60
>gi|124024594|ref|YP_001018901.1| NAD-dependent DNA ligase LigA [Prochlorococcus marinus str. MIT
9303]
gi|166216228|sp|A2CDS6|DNLJ_PROM3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|123964880|gb|ABM79636.1| NAD-dependent DNA ligase [Prochlorococcus marinus str. MIT 9303]
Length = 696
Score = 79.5 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 52 TSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
TS + E E+ L+ A H YY LD P D +YDR+ L L+ + L D
Sbjct: 4 TSRTPPERAAELRQLLNQAAH---SYYVLDTPTMEDAVYDRLYRELLDLEVKDSSLLTPD 60
Query: 112 HPWNTVG 118
P +G
Sbjct: 61 SPTQRIG 67
>gi|251799680|ref|YP_003014411.1| NAD-dependent DNA ligase LigA [Paenibacillus sp. JDR-2]
gi|247547306|gb|ACT04325.1| DNA ligase, NAD-dependent [Paenibacillus sp. JDR-2]
Length = 677
Score = 79.5 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E + ++ L H YY LD P D YD++ + L AL+ + D P V
Sbjct: 9 EQLTRMQELAAEISAHNYSYYTLDQPTINDADYDKLYDELVALEAD-TGVVLPDSPTQRV 67
Query: 118 G 118
G
Sbjct: 68 G 68
>gi|226325717|ref|ZP_03801235.1| hypothetical protein COPCOM_03530 [Coprococcus comes ATCC 27758]
gi|225205841|gb|EEG88195.1| hypothetical protein COPCOM_03530 [Coprococcus comes ATCC 27758]
Length = 687
Score = 79.5 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
KK S+S + ++ LVK ++ YY D PL +D YDR+ + L L+EQ
Sbjct: 20 PQKKGDSMS----VKRIKNLVKQLNEYRHAYYNQDAPLVSDAEYDRLFDELKELEEQ-TG 74
Query: 107 LFDEDHPWNTVGY 119
+ P TVGY
Sbjct: 75 FILSNSPTQTVGY 87
>gi|322376748|ref|ZP_08051241.1| DNA ligase, NAD-dependent [Streptococcus sp. M334]
gi|321282555|gb|EFX59562.1| DNA ligase, NAD-dependent [Streptococcus sp. M334]
Length = 652
Score = 79.5 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV + + YY DNP +D YDR+ L L+ +P+ D P + VG
Sbjct: 3 KRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPDQVLADSPTHRVG 60
>gi|225868755|ref|YP_002744703.1| DNA ligase [Streptococcus equi subsp. zooepidemicus]
gi|225702031|emb|CAW99626.1| DNA ligase [Streptococcus equi subsp. zooepidemicus]
Length = 652
Score = 79.5 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 27/59 (45%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L + +++ YY D P +D YD++ L L++ +P +D P VG
Sbjct: 2 KKRIRELTDLLNQYRQEYYTNDAPSVSDSEYDKLYRELVELEQTYPAYILKDSPTQLVG 60
>gi|195977913|ref|YP_002123157.1| NAD-dependent DNA ligase LigA [Streptococcus equi subsp.
zooepidemicus MGCS10565]
gi|254781421|sp|B4U2C7|DNLJ_STREM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|195974618|gb|ACG62144.1| DNA ligase LigA [Streptococcus equi subsp. zooepidemicus MGCS10565]
Length = 652
Score = 79.5 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 27/59 (45%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L + +++ YY D P +D YD++ L L++ +P +D P VG
Sbjct: 2 KKRIRELTDLLNQYRQEYYTNDAPSVSDSEYDKLYRELVELEQTYPAYILKDSPTQLVG 60
>gi|168483195|ref|ZP_02708147.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC1873-00]
gi|168492012|ref|ZP_02716155.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC0288-04]
gi|221231854|ref|YP_002511006.1| DNA ligase [Streptococcus pneumoniae ATCC 700669]
gi|225854613|ref|YP_002736125.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae JJA]
gi|254781427|sp|B8ZPV9|DNLJ_STRPJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254781431|sp|C1CEA4|DNLJ_STRZJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|172043461|gb|EDT51507.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC1873-00]
gi|183573785|gb|EDT94313.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC0288-04]
gi|220674314|emb|CAR68857.1| DNA ligase [Streptococcus pneumoniae ATCC 700669]
gi|225722247|gb|ACO18100.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae JJA]
gi|332201605|gb|EGJ15675.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae GA47368]
Length = 652
Score = 79.5 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 26/58 (44%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV + + YY DNP D YDR+ L L+ +PE D P + VG
Sbjct: 3 KRMNELVALLNRYATEYYTSDNPSVADSEYDRLYRELVELETAYPEQVLADSPTHRVG 60
>gi|307706499|ref|ZP_07643306.1| DNA ligase, NAD-dependent [Streptococcus mitis SK321]
gi|307617954|gb|EFN97114.1| DNA ligase, NAD-dependent [Streptococcus mitis SK321]
Length = 652
Score = 79.5 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV + + YY DNP +D YDR+ L L+ +P+ D P + VG
Sbjct: 3 KRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPDQVLADSPTHRVG 60
>gi|329936847|ref|ZP_08286526.1| NAD-dependent DNA ligase LigA [Streptomyces griseoaurantiacus M045]
gi|329303772|gb|EGG47656.1| NAD-dependent DNA ligase LigA [Streptomyces griseoaurantiacus M045]
Length = 731
Score = 79.5 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 28/62 (45%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
+A L + H+ YY D P+ +D +DR+ L L+E+ PEL D P
Sbjct: 13 PAQARERHVRLAEQIEEHRFRYYVKDAPVVSDAEFDRLLRELQELEERHPELRTPDSPTQ 72
Query: 116 TV 117
V
Sbjct: 73 KV 74
>gi|225870290|ref|YP_002746237.1| DNA ligase [Streptococcus equi subsp. equi 4047]
gi|254781420|sp|C0M6L2|DNLJ_STRE4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|225699694|emb|CAW93413.1| DNA ligase [Streptococcus equi subsp. equi 4047]
Length = 652
Score = 79.5 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 27/59 (45%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L + +++ YY D P +D YD++ L L++ +P +D P VG
Sbjct: 2 KKRIRELTDLLNQYRQEYYTNDAPSVSDSEYDKLYRELVELEQTYPAYILKDSPTQLVG 60
>gi|212715716|ref|ZP_03323844.1| hypothetical protein BIFCAT_00616 [Bifidobacterium catenulatum DSM
16992]
gi|212661083|gb|EEB21658.1| hypothetical protein BIFCAT_00616 [Bifidobacterium catenulatum DSM
16992]
Length = 891
Score = 79.5 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 29/69 (42%)
Query: 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
V+S+S A + Q YY D P+ +D YD L AL+ QFP L
Sbjct: 64 DVSSMSAEAAARLWARVAAWVESDQIAYYIDDAPVSSDAAYDARMRCLQALEAQFPSLDS 123
Query: 110 EDHPWNTVG 118
P + VG
Sbjct: 124 TQSPTHRVG 132
>gi|257793288|ref|ZP_05642267.1| DNA ligase, NAD-dependent [Staphylococcus aureus A9781]
gi|257787260|gb|EEV25600.1| DNA ligase, NAD-dependent [Staphylococcus aureus A9781]
Length = 245
Score = 79.5 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 25/58 (43%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
V L + + YY DNP D YD++ L ++E+ PE D P VG
Sbjct: 6 SRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTVDSPTVRVG 63
>gi|185178794|ref|ZP_02554752.2| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 5 str.
ATCC 27817]
gi|188024241|ref|ZP_02569990.2| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 7 str.
ATCC 27819]
gi|188518556|ref|ZP_03004016.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 11 str.
ATCC 33695]
gi|209554205|ref|YP_002284543.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 10 str.
ATCC 33699]
gi|225551582|ref|ZP_03772528.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 8 str.
ATCC 27618]
gi|254781448|sp|B5ZAV3|DNLJ_UREU1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|184209414|gb|EDU06457.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 5 str.
ATCC 27817]
gi|188018900|gb|EDU56940.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 7 str.
ATCC 27819]
gi|188997873|gb|EDU66970.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 11 str.
ATCC 33695]
gi|209541706|gb|ACI59935.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 10 str.
ATCC 33699]
gi|225379397|gb|EEH01762.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 8 str.
ATCC 27618]
Length = 673
Score = 79.5 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 25/62 (40%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ L + YY LD+P D +YD+ L L+ +P+ + P
Sbjct: 2 DRIKAKINELKQKLDQWNYEYYVLDDPSVPDHVYDQAMRELIELENAYPQFKTNNSPSVR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|171920530|ref|ZP_02695360.2| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 13 str.
ATCC 33698]
gi|171903225|gb|EDT49514.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 13 str.
ATCC 33698]
Length = 673
Score = 79.5 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 25/62 (40%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ L + YY LD+P D +YD+ L L+ +P+ + P
Sbjct: 2 DRIKAKINELKQKLDQWNYEYYVLDDPSVPDHVYDQAMRELIELENAYPQFKTNNSPSVR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|225550545|ref|ZP_03771494.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 2 str.
ATCC 27814]
gi|225379699|gb|EEH02061.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 2 str.
ATCC 27814]
Length = 673
Score = 79.5 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 25/62 (40%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ L + YY LD+P D +YD+ L L+ +P+ + P
Sbjct: 2 DRIKAKINELKQKLDQWNYEYYVLDDPSVPDHVYDQAMRELIELENAYPQFKTNNSPSVR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|42521704|ref|NP_967084.1| DNA ligase [Bdellovibrio bacteriovorus HD100]
gi|81618744|sp|Q6MRL9|DNLJ_BDEBA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|39574234|emb|CAE77738.1| DNA ligase [Bdellovibrio bacteriovorus HD100]
Length = 684
Score = 79.5 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 26/60 (43%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ E L KI H Y+ LD P TD YD++ L +++ L D P VG
Sbjct: 20 SKKRHEELKKIISEHDHNYHVLDKPTITDYEYDQLFAELLDIEKNPKGLDLSDSPSQRVG 79
>gi|227503896|ref|ZP_03933945.1| NAD-dependent DNA ligase LigA [Corynebacterium striatum ATCC 6940]
gi|227199519|gb|EEI79567.1| NAD-dependent DNA ligase LigA [Corynebacterium striatum ATCC 6940]
Length = 680
Score = 79.1 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+ + L + H++ YY + P D +D + +RL L+ + PEL D P V
Sbjct: 12 DIQRKWSELAQEVRKHRELYYNGE-PSIPDADFDELFQRLLKLEAEHPELAVPDSPTQQV 70
Query: 118 G 118
G
Sbjct: 71 G 71
>gi|188524111|ref|ZP_03004188.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 12 str.
ATCC 33696]
gi|198273308|ref|ZP_03205844.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 4 str.
ATCC 27816]
gi|195659974|gb|EDX53354.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 12 str.
ATCC 33696]
gi|198249828|gb|EDY74608.1| DNA ligase, NAD-dependent [Ureaplasma urealyticum serovar 4 str.
ATCC 27816]
Length = 673
Score = 79.1 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 25/62 (40%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
++ L + YY LD+P D +YD+ L L+ +P+ + P
Sbjct: 2 DRIKAKINELKQKLDQWNYEYYVLDDPSVPDHVYDQAMRELIELENAYPQFKTNNSPSVR 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|56962859|ref|YP_174586.1| NAD-dependent DNA ligase LigA [Bacillus clausii KSM-K16]
gi|81366743|sp|Q5WJ30|DNLJ_BACSK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|56909098|dbj|BAD63625.1| DNA ligase [Bacillus clausii KSM-K16]
Length = 671
Score = 79.1 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K +A ++ L + + YY LD P D YDR+ L L+ +P+L ED P
Sbjct: 1 MDKHQAEKRLKELRLLLEDYGYHYYVLDTPKVPDSEYDRLMNELLQLEADYPDLVTEDSP 60
Query: 114 WNTVG 118
+G
Sbjct: 61 SVRIG 65
>gi|148989161|ref|ZP_01820551.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae SP6-BS73]
gi|147925384|gb|EDK76462.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae SP6-BS73]
Length = 374
Score = 79.1 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 27/56 (48%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV + + YY DNP +D YDR+ L L+ +PE D P + VG
Sbjct: 1 MNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPTHRVG 56
>gi|281307118|pdb|3JSL|A Chain A, Crystal Structure Of The Adenylation Domain Of Nad+-
Dependent Dna Ligase From Staphylococcus Aureus
gi|281307119|pdb|3JSL|B Chain B, Crystal Structure Of The Adenylation Domain Of Nad+-
Dependent Dna Ligase From Staphylococcus Aureus
gi|281307120|pdb|3JSN|A Chain A, Crystal Structure Of The Adenylation Domain Of Nad+-
Dependent Dna Ligase From Staphylococcus Aureus
Length = 318
Score = 79.1 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 25/58 (43%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
V L + + YY DNP D YD++ L ++E+ PE D P VG
Sbjct: 6 SRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTVDSPTVRVG 63
>gi|163757008|ref|ZP_02164114.1| DNA ligase [Kordia algicida OT-1]
gi|161323012|gb|EDP94355.1| DNA ligase [Kordia algicida OT-1]
Length = 665
Score = 79.1 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 25/60 (41%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L H YY LDN +D +D + L L+ + PE D + P VG
Sbjct: 4 IQEKLTALRDELREHNYNYYVLDNATISDYEFDMKLKELQELEAKHPEFHDPNSPTLRVG 63
>gi|313884866|ref|ZP_07818618.1| DNA ligase (NAD+) [Eremococcus coleocola ACS-139-V-Col8]
gi|312619557|gb|EFR30994.1| DNA ligase (NAD+) [Eremococcus coleocola ACS-139-V-Col8]
Length = 673
Score = 78.7 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 49 KKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF 108
K++ ++ + + L + YY LD P D +YD++ +L+ L++ P+
Sbjct: 2 KEIKEMTLDDY----QDLKEQLNQLAYAYYVLDKPQAEDAVYDQMYRQLENLEKIHPDWL 57
Query: 109 DEDHPWNTVG 118
D P +G
Sbjct: 58 SPDSPTQRIG 67
>gi|307709253|ref|ZP_07645711.1| DNA ligase, NAD-dependent [Streptococcus mitis SK564]
gi|307619836|gb|EFN98954.1| DNA ligase, NAD-dependent [Streptococcus mitis SK564]
Length = 648
Score = 78.7 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV + + YY DNP +D YDR+ L L+ +P+ D P + VG
Sbjct: 1 MNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELESAYPDQVLADSPTHRVG 56
>gi|113954059|ref|YP_731994.1| NAD-dependent DNA ligase LigA [Synechococcus sp. CC9311]
gi|122945488|sp|Q0I6C8|DNLJ_SYNS3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|113881410|gb|ABI46368.1| DNA ligase, NAD-dependent [Synechococcus sp. CC9311]
Length = 697
Score = 78.7 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 24/58 (41%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E L ++ YY LD P D +YD++ L L+ Q L D P VG
Sbjct: 15 ERAEELRRLLNRAAHAYYVLDAPDMEDPVYDQLYRELQDLEHQDSTLVSADSPTQRVG 72
>gi|183603490|ref|ZP_02717204.2| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC3059-06]
gi|183576581|gb|EDT97109.1| DNA ligase, NAD-dependent [Streptococcus pneumoniae CDC3059-06]
Length = 648
Score = 78.7 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 26/56 (46%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV + + YY DNP D YDR+ L L+ +PE D P + VG
Sbjct: 1 MNELVALLNRYATEYYTSDNPSVADSEYDRLYRELVELETAYPEQVLADSPTHRVG 56
>gi|154488672|ref|ZP_02029521.1| hypothetical protein BIFADO_01979 [Bifidobacterium adolescentis
L2-32]
gi|154082809|gb|EDN81854.1| hypothetical protein BIFADO_01979 [Bifidobacterium adolescentis
L2-32]
Length = 890
Score = 78.7 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 28/69 (40%)
Query: 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
V S+S A + Q YY D P+ +D YD L +L+ QFP L
Sbjct: 60 DVASMSAEAAARLWARVAAWVESDQIAYYIDDAPVSSDAAYDARLRCLQSLEAQFPSLDS 119
Query: 110 EDHPWNTVG 118
P + VG
Sbjct: 120 PQSPTHRVG 128
>gi|119025970|ref|YP_909815.1| LigA [Bifidobacterium adolescentis ATCC 15703]
gi|166215398|sp|A1A200|DNLJ_BIFAA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|118765554|dbj|BAF39733.1| LigA [Bifidobacterium adolescentis ATCC 15703]
Length = 892
Score = 78.7 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 28/69 (40%)
Query: 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
V S+S A + Q YY D P+ +D YD L +L+ QFP L
Sbjct: 62 DVASMSAEAAARLWARVAAWVESDQIAYYIDDAPVSSDAAYDARLRCLQSLEAQFPSLDS 121
Query: 110 EDHPWNTVG 118
P + VG
Sbjct: 122 PQSPTHRVG 130
>gi|325125239|gb|ADY84569.1| DNA ligase [Lactobacillus delbrueckii subsp. bulgaricus 2038]
Length = 671
Score = 78.7 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 26/64 (40%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S EA EV L K YY D P+ D +YD RL L+ + EL D
Sbjct: 4 SLEEAKQEVRQLRAQLDQWAKAYYEQDAPVVEDHVYDEKYARLLELEAAYSELKSADSIT 63
Query: 115 NTVG 118
VG
Sbjct: 64 QRVG 67
>gi|154507531|ref|ZP_02043173.1| hypothetical protein ACTODO_00010 [Actinomyces odontolyticus ATCC
17982]
gi|153799320|gb|EDN81740.1| hypothetical protein ACTODO_00010 [Actinomyces odontolyticus ATCC
17982]
Length = 777
Score = 78.7 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 30/69 (43%)
Query: 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
+ + LV + YY D+P D YDR+ ++ ++E++P+L
Sbjct: 3 PMADSTFETTRDRYNDLVDRINEARAAYYDRDSPTLADADYDRMYREVEEIEERYPQLRG 62
Query: 110 EDHPWNTVG 118
D P +VG
Sbjct: 63 ADSPTMSVG 71
>gi|256785054|ref|ZP_05523485.1| NAD-dependent DNA ligase LigA [Streptomyces lividans TK24]
gi|289768947|ref|ZP_06528325.1| DNA ligase, NAD-dependent [Streptomyces lividans TK24]
gi|289699146|gb|EFD66575.1| DNA ligase, NAD-dependent [Streptomyces lividans TK24]
Length = 735
Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 46 DKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFP 105
DK + TS+ EA L + H+ YY D P+ +D +DR+ L+ L+E+ P
Sbjct: 8 DKQAETTSV-PAEARERHAQLAEQIEEHRFRYYVNDAPVVSDAEFDRLLRTLEELEERHP 66
Query: 106 ELFDEDHPWNTV 117
EL + P V
Sbjct: 67 ELRTPESPTQKV 78
>gi|171742735|ref|ZP_02918542.1| hypothetical protein BIFDEN_01849 [Bifidobacterium dentium ATCC
27678]
gi|283456203|ref|YP_003360767.1| NAD-dependent DNA ligase [Bifidobacterium dentium Bd1]
gi|171278349|gb|EDT46010.1| hypothetical protein BIFDEN_01849 [Bifidobacterium dentium ATCC
27678]
gi|283102837|gb|ADB09943.1| NAD-dependent DNA ligase [Bifidobacterium dentium Bd1]
Length = 897
Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 29/69 (42%)
Query: 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
V+SLS A + Q YY D P+ +D YD L AL+ QFP L
Sbjct: 62 DVSSLSAEAAARLWAKVAAWVESDQIAYYIDDAPISSDAAYDARLRCLQALESQFPSLDT 121
Query: 110 EDHPWNTVG 118
P + VG
Sbjct: 122 PQSPTHRVG 130
>gi|21223850|ref|NP_629629.1| NAD-dependent DNA ligase LigA [Streptomyces coelicolor A3(2)]
gi|7674017|sp|Q9Z585|DNLJ1_STRCO RecName: Full=DNA ligase 1; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] 1
gi|4467245|emb|CAB37570.1| putative DNA ligase [Streptomyces coelicolor A3(2)]
Length = 735
Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 46 DKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFP 105
DK + TS+ EA L + H+ YY D P+ +D +DR+ L+ L+E+ P
Sbjct: 8 DKQAETTSV-PAEARERHAQLAEQIEEHRFRYYVNDAPVVSDAEFDRLLRTLEELEERHP 66
Query: 106 ELFDEDHPWNTV 117
EL + P V
Sbjct: 67 ELRTPESPTQKV 78
>gi|171920195|ref|ZP_02931577.1| DNA ligase, NAD-dependent [Ureaplasma parvum serovar 1 str. ATCC
27813]
gi|171902576|gb|EDT48865.1| DNA ligase, NAD-dependent [Ureaplasma parvum serovar 1 str. ATCC
27813]
Length = 673
Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ +++ L + YY LD+P D +YD+ L L+ +P+ + P
Sbjct: 2 DKIKAKIDELKQKLDQWNYEYYVLDDPSVPDHVYDQTMRELIELENNYPQFKTNNSPSVK 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|78485583|ref|YP_391508.1| DNA ligase, NAD-dependent [Thiomicrospira crunogena XCL-2]
gi|123741582|sp|Q31G89|DNLJ_THICR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|78363869|gb|ABB41834.1| DNA ligase, NAD-dependent [Thiomicrospira crunogena XCL-2]
Length = 672
Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 30/55 (54%)
Query: 64 EYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV+ H YY LD+P+ +D YD + ++L ++++ P+ + P +G
Sbjct: 8 QKLVESLNQHSYQYYVLDDPIISDPQYDVLYQKLLRIEDEHPDWILPESPSQRIG 62
>gi|13357678|ref|NP_077952.1| DNA ligase [Ureaplasma parvum serovar 3 str. ATCC 700970]
gi|170762219|ref|YP_001752204.1| DNA ligase, NAD-dependent [Ureaplasma parvum serovar 3 str. ATCC
27815]
gi|183508850|ref|ZP_02958298.1| DNA ligase, NAD-dependent [Ureaplasma parvum serovar 14 str. ATCC
33697]
gi|81549679|sp|Q9PR23|DNLJ_UREPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254781447|sp|B1AIB0|DNLJ_UREP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|11272940|pir||F82930 DNA ligase UU121 [imported] - Ureaplasma urealyticum
gi|6899079|gb|AAF30527.1|AE002113_1 DNA ligase [Ureaplasma parvum serovar 3 str. ATCC 700970]
gi|168827796|gb|ACA33058.1| DNA ligase, NAD-dependent [Ureaplasma parvum serovar 3 str. ATCC
27815]
gi|182675825|gb|EDT87730.1| DNA ligase, NAD-dependent [Ureaplasma parvum serovar 14 str. ATCC
33697]
Length = 673
Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ +++ L + YY LD+P D +YD+ L L+ +P+ + P
Sbjct: 2 DKIKAKIDELKQKLDQWNYEYYVLDDPSVPDHVYDQTMRELIELENNYPQFKTNNSPSVK 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|309777086|ref|ZP_07672052.1| DNA ligase, NAD-dependent [Erysipelotrichaceae bacterium 3_1_53]
gi|308915156|gb|EFP60930.1| DNA ligase, NAD-dependent [Erysipelotrichaceae bacterium 3_1_53]
Length = 665
Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 29/60 (48%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ + L KI YY LD P +D YDR + L AL+E++P+ D + VG
Sbjct: 2 SQQRILELRKILDRLAYEYYVLDQPSMSDQEYDRYYQELVALEEKYPQYRDPNSITQRVG 61
>gi|186701986|ref|ZP_02554435.2| DNA ligase, NAD-dependent [Ureaplasma parvum serovar 6 str. ATCC
27818]
gi|186700761|gb|EDU19043.1| DNA ligase, NAD-dependent [Ureaplasma parvum serovar 6 str. ATCC
27818]
Length = 673
Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 27/62 (43%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ +++ L + YY LD+P D +YD+ L L+ +P+ + P
Sbjct: 2 DKIKAKIDELKQKLDQWNYEYYVLDDPSVPDHVYDQTMRELIELENNYPQFKTNNSPSVK 61
Query: 117 VG 118
VG
Sbjct: 62 VG 63
>gi|116513594|ref|YP_812500.1| NAD-dependent DNA ligase [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
gi|122275636|sp|Q04BW0|DNLJ_LACDB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|116092909|gb|ABJ58062.1| NAD-dependent DNA ligase [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
Length = 671
Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 26/64 (40%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S EA EV L K YY D P+ D +YD RL L+ + EL D
Sbjct: 4 SLEEAKQEVRQLRAQLDQWAKAYYEQDAPVVEDHVYDEKYARLLELEAAYSELKSADSIT 63
Query: 115 NTVG 118
VG
Sbjct: 64 QRVG 67
>gi|46447394|ref|YP_008759.1| NAD-dependent DNA ligase LigA [Candidatus Protochlamydia
amoebophila UWE25]
gi|81626502|sp|Q6MAB5|DNLJ_PARUW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|46401035|emb|CAF24484.1| probable DNA ligase [Candidatus Protochlamydia amoebophila UWE25]
Length = 665
Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 64 EYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E L HH K YY P+ +D +D + ++L+ ++ PE E P V
Sbjct: 8 EKLCHEIWHHNKLYYIEHQPIISDEEFDALLKKLEEIERSHPEWITEFSPSQRV 61
>gi|149372321|ref|ZP_01891509.1| putative DNA ligase [unidentified eubacterium SCB49]
gi|149354711|gb|EDM43274.1| putative DNA ligase [unidentified eubacterium SCB49]
Length = 677
Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 29/60 (48%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L + + YY LDN +D +D+ + L L++ PE FD + P VG
Sbjct: 3 IEQQIKELREELRAYNYQYYVLDNATVSDFEFDQKLKELQQLEDAHPEYFDANSPTQRVG 62
>gi|88800009|ref|ZP_01115580.1| DNA ligase, NAD-dependent [Reinekea sp. MED297]
gi|88777287|gb|EAR08491.1| DNA ligase, NAD-dependent [Reinekea sp. MED297]
Length = 674
Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 24/60 (40%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E + L++ + YY L+ D YDR+ E L ++ + P+ P V
Sbjct: 3 ELHDRYQALIQQIRRYDHEYYVLNESAIPDVEYDRLMEELKRIESEHPQWVTPQSPTQRV 62
>gi|296532809|ref|ZP_06895486.1| NAD-dependent DNA ligase LigA [Roseomonas cervicalis ATCC 49957]
gi|296266870|gb|EFH12818.1| NAD-dependent DNA ligase LigA [Roseomonas cervicalis ATCC 49957]
Length = 719
Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 35/68 (51%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
++ VT+L++ +A E+ L + Y++ D P+ TD YD + R A++ +FP
Sbjct: 6 RSLPVTALTEAQAAEELAALAQAIAEADLAYHQQDAPVITDAEYDALRRRNAAIEARFPA 65
Query: 107 LFDEDHPW 114
L D P
Sbjct: 66 LKRADSPS 73
>gi|145295383|ref|YP_001138204.1| NAD-dependent DNA ligase LigA [Corynebacterium glutamicum R]
gi|166215581|sp|A4QDK5|DNLJ_CORGB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|140845303|dbj|BAF54302.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 680
Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 54 LSKGEAMIE--VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
+++ A + L + +H+ YY + P D +D + ++L L+E PEL D
Sbjct: 1 MTEDNAQLRRTWNDLAEKVRYHRDRYY-NEQPEIPDADFDALFKQLQQLEEDHPELAVPD 59
Query: 112 HPWNTVG 118
P VG
Sbjct: 60 SPTMVVG 66
>gi|19552465|ref|NP_600467.1| NAD-dependent DNA ligase LigA [Corynebacterium glutamicum ATCC
13032]
gi|62390131|ref|YP_225533.1| NAD-dependent DNA ligase LigA [Corynebacterium glutamicum ATCC
13032]
gi|81760918|sp|Q8NR20|DNLJ_CORGL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|21324011|dbj|BAB98637.1| NAD-dependent DNA ligase (contains BRCT domain type II)
[Corynebacterium glutamicum ATCC 13032]
gi|41325467|emb|CAF19947.1| DNA LIGASE [Corynebacterium glutamicum ATCC 13032]
Length = 680
Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 54 LSKGEAMIE--VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
+++ A + L + +H+ YY + P D +D + ++L L+E PEL D
Sbjct: 1 MTEDNAQLRRTWNDLAEKVRYHRDRYY-NEQPEIPDADFDALFKQLQQLEEDHPELAVPD 59
Query: 112 HPWNTVG 118
P VG
Sbjct: 60 SPTMVVG 66
>gi|153853203|ref|ZP_01994612.1| hypothetical protein DORLON_00597 [Dorea longicatena DSM 13814]
gi|149753989|gb|EDM63920.1| hypothetical protein DORLON_00597 [Dorea longicatena DSM 13814]
Length = 692
Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
KK S+S + ++ LVK ++ YY D PL +D YDR+ ++L L+EQ
Sbjct: 20 PQKKGDSMS----IKRIKNLVKQLNEYRHAYYNQDAPLVSDAEYDRLFDKLKKLEEQ-TG 74
Query: 107 LFDEDHPWNTVGY 119
+ P TVGY
Sbjct: 75 FILSNSPTQTVGY 87
>gi|255535523|ref|YP_003095894.1| DNA ligase [Flavobacteriaceae bacterium 3519-10]
gi|255341719|gb|ACU07832.1| DNA ligase [Flavobacteriaceae bacterium 3519-10]
Length = 667
Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 29/63 (46%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
+++ L K H YY LD P +D +D + L L+ QFPE +D + P
Sbjct: 2 PENIQQKIDALRKEIHQHNYSYYSLDEPTISDFEFDLKLKELQDLELQFPEFYDNNSPTL 61
Query: 116 TVG 118
VG
Sbjct: 62 RVG 64
>gi|289178474|gb|ADC85720.1| NAD-dependent DNA ligase [Bifidobacterium animalis subsp. lactis
BB-12]
Length = 889
Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 30/69 (43%)
Query: 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
V+ L+ +A+ L Q YY D PL +D YD L L+ +FP+L
Sbjct: 65 DVSKLNVEQAVRLWSRLSAWVEGDQVAYYVKDAPLSSDAAYDARMNCLKRLESEFPQLDT 124
Query: 110 EDHPWNTVG 118
P + VG
Sbjct: 125 PQSPTHRVG 133
>gi|171463268|ref|YP_001797381.1| DNA ligase, NAD-dependent [Polynucleobacter necessarius subsp.
necessarius STIR1]
gi|254781389|sp|B1XTU0|DNLJ_POLNS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|171192806|gb|ACB43767.1| DNA ligase, NAD-dependent [Polynucleobacter necessarius subsp.
necessarius STIR1]
Length = 671
Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 23/59 (38%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+L + YY LDNPL D YDR+ L ++ PE + VG
Sbjct: 10 AERYAFLQAELARLEHAYYVLDNPLLPDIEYDRLYRELLDIEAVHPEWVTSESLSQRVG 68
>gi|15672401|ref|NP_266575.1| NAD-dependent DNA ligase LigA [Lactococcus lactis subsp. lactis
Il1403]
gi|81538437|sp|Q9CIE4|DNLJ_LACLA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|12723294|gb|AAK04517.1|AE006278_8 DNA ligase [Lactococcus lactis subsp. lactis Il1403]
gi|326405996|gb|ADZ63067.1| NAD-dependent DNA ligase [Lactococcus lactis subsp. lactis CV56]
Length = 654
Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 28/60 (46%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L + + YY LD P D YDR+ + L L+ + P+L D P + G
Sbjct: 3 IESKIKELTEKLNQYAYEYYTLDEPSVEDSEYDRLYQELVKLEAENPQLTRADSPTHRTG 62
>gi|254465633|ref|ZP_05079044.1| DNA ligase, NAD-dependent [Rhodobacterales bacterium Y4I]
gi|206686541|gb|EDZ47023.1| DNA ligase, NAD-dependent [Rhodobacterales bacterium Y4I]
Length = 750
Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 34/75 (45%)
Query: 44 WLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQ 103
+ K VT+L+ +A E L Y++ D P +D YD + +R AL E
Sbjct: 2 AENSEKDVTALTAEDARAEFLALEDQLRAADLAYHQADAPEISDAEYDSLKQRYRALAEA 61
Query: 104 FPELFDEDHPWNTVG 118
FP+L D + VG
Sbjct: 62 FPDLADAATHLDAVG 76
>gi|281490961|ref|YP_003352941.1| NAD-dependent DNA ligase [Lactococcus lactis subsp. lactis KF147]
gi|281374719|gb|ADA64239.1| NAD-dependent DNA ligase [Lactococcus lactis subsp. lactis KF147]
Length = 654
Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 28/60 (46%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L + + YY LD P D YDR+ + L L+ + P+L D P + G
Sbjct: 3 IESKIKELTEKLNQYAYEYYTLDEPSVEDSEYDRLYQELVKLEAENPQLTRADSPTHRTG 62
>gi|293365500|ref|ZP_06612209.1| NAD-dependent DNA ligase LigA [Streptococcus oralis ATCC 35037]
gi|307703456|ref|ZP_07640398.1| DNA ligase, NAD-dependent [Streptococcus oralis ATCC 35037]
gi|291315868|gb|EFE56312.1| NAD-dependent DNA ligase LigA [Streptococcus oralis ATCC 35037]
gi|307622863|gb|EFO01858.1| DNA ligase, NAD-dependent [Streptococcus oralis ATCC 35037]
Length = 652
Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV + + YY DNP +D YD + L L+ +P+ D P + VG
Sbjct: 3 ERMNELVALLNRYATEYYTSDNPSVSDSEYDCLYRELVELEAAYPDQVLADSPTHRVG 60
>gi|328954073|ref|YP_004371407.1| DNA ligase [Desulfobacca acetoxidans DSM 11109]
gi|328454397|gb|AEB10226.1| DNA ligase [Desulfobacca acetoxidans DSM 11109]
Length = 676
Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 29/61 (47%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E L +H YY LD+P +D YD + L+ L+E++PEL D P V
Sbjct: 10 EIAARAARLRDQIHYHDYRYYVLDDPEISDAEYDLLFRELERLEEEYPELVTPDSPTQRV 69
Query: 118 G 118
G
Sbjct: 70 G 70
>gi|145589636|ref|YP_001156233.1| DNA ligase, NAD-dependent [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
gi|190359270|sp|A4SYV5|DNLJ_POLSQ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|145048042|gb|ABP34669.1| DNA ligase, NAD-dependent [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
Length = 671
Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 22/53 (41%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L + YY LDNPL D YDR+ L ++ P+ + VG
Sbjct: 16 LQAELARLEHAYYVLDNPLLPDIEYDRLYRELLDIEAAHPQWVTSESLSQRVG 68
>gi|306822599|ref|ZP_07455977.1| NAD-dependent DNA ligase LigA [Bifidobacterium dentium ATCC 27679]
gi|304554144|gb|EFM42053.1| NAD-dependent DNA ligase LigA [Bifidobacterium dentium ATCC 27679]
Length = 897
Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 29/69 (42%)
Query: 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
V+SLS A + Q YY D P+ +D YD L AL+ QFP L
Sbjct: 62 DVSSLSAEAAARLWAKVAAWVESDQIAYYIDDAPISSDAAYDARLRCLQALESQFPPLDT 121
Query: 110 EDHPWNTVG 118
P + VG
Sbjct: 122 PQSPTHRVG 130
>gi|326796428|ref|YP_004314248.1| DNA ligase [Marinomonas mediterranea MMB-1]
gi|326547192|gb|ADZ92412.1| DNA ligase [Marinomonas mediterranea MMB-1]
Length = 680
Score = 78.0 bits (191), Expect = 5e-13, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 54 LSKGE--AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
++ + ++ V+ LV + Y+ D+P D YDR+ + L ++ + P+ D
Sbjct: 1 MTDAQTPSLEYVKTLVSQLNDYSYSYHVKDDPKVPDSEYDRLYKALQLIELKNPQWIQPD 60
Query: 112 HPWNTVG 118
P VG
Sbjct: 61 SPTQRVG 67
>gi|183601766|ref|ZP_02963136.1| LigA [Bifidobacterium animalis subsp. lactis HN019]
gi|219683704|ref|YP_002470087.1| DNA ligase, NAD-dependent [Bifidobacterium animalis subsp. lactis
AD011]
gi|241190736|ref|YP_002968130.1| LigA [Bifidobacterium animalis subsp. lactis Bl-04]
gi|241196142|ref|YP_002969697.1| LigA [Bifidobacterium animalis subsp. lactis DSM 10140]
gi|254781258|sp|B8DU32|DNLJ_BIFA0 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|183219372|gb|EDT90013.1| LigA [Bifidobacterium animalis subsp. lactis HN019]
gi|219621354|gb|ACL29511.1| DNA ligase, NAD-dependent [Bifidobacterium animalis subsp. lactis
AD011]
gi|240249128|gb|ACS46068.1| LigA [Bifidobacterium animalis subsp. lactis Bl-04]
gi|240250696|gb|ACS47635.1| LigA [Bifidobacterium animalis subsp. lactis DSM 10140]
gi|295793725|gb|ADG33260.1| LigA [Bifidobacterium animalis subsp. lactis V9]
Length = 863
Score = 78.0 bits (191), Expect = 5e-13, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 30/69 (43%)
Query: 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
V+ L+ +A+ L Q YY D PL +D YD L L+ +FP+L
Sbjct: 39 DVSKLNVEQAVRLWSRLSAWVEGDQVAYYVKDAPLSSDAAYDARMNCLKRLESEFPQLDT 98
Query: 110 EDHPWNTVG 118
P + VG
Sbjct: 99 PQSPTHRVG 107
>gi|125623311|ref|YP_001031794.1| NAD-dependent DNA ligase LigA [Lactococcus lactis subsp. cremoris
MG1363]
gi|166215816|sp|A2RIF3|DNLJ_LACLM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|124492119|emb|CAL97048.1| DNA ligase [Lactococcus lactis subsp. cremoris MG1363]
gi|300070060|gb|ADJ59460.1| NAD-dependent DNA ligase LigA [Lactococcus lactis subsp. cremoris
NZ9000]
Length = 686
Score = 78.0 bits (191), Expect = 5e-13, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 25/60 (41%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L YY LD P D YD + L L+++ P+L D P + G
Sbjct: 3 IESKIKELTDQLNQFAYEYYTLDEPSVEDSEYDHLYHELVKLEQENPQLVRADSPTHRTG 62
>gi|293188969|ref|ZP_06607703.1| DNA ligase, NAD-dependent [Actinomyces odontolyticus F0309]
gi|292822104|gb|EFF81029.1| DNA ligase, NAD-dependent [Actinomyces odontolyticus F0309]
Length = 777
Score = 78.0 bits (191), Expect = 5e-13, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 30/69 (43%)
Query: 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
+ + LV + YY D+P D YDR+ ++ ++E++P+L
Sbjct: 3 PMADSTFETTRDRYNDLVDRINDARAAYYDRDSPTLADADYDRMYREVEQIEERYPQLRS 62
Query: 110 EDHPWNTVG 118
D P +VG
Sbjct: 63 ADSPTMSVG 71
>gi|309800924|ref|ZP_07695056.1| DNA ligase (NAD+) [Bifidobacterium dentium JCVIHMP022]
gi|308222460|gb|EFO78740.1| DNA ligase (NAD+) [Bifidobacterium dentium JCVIHMP022]
Length = 885
Score = 77.6 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 29/69 (42%)
Query: 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
V+SLS A + Q YY D P+ +D YD L AL+ QFP L
Sbjct: 62 DVSSLSAEAAARLWAKVAAWVESDQIAYYIDDAPISSDAAYDARLRCLQALESQFPPLDT 121
Query: 110 EDHPWNTVG 118
P + VG
Sbjct: 122 PQSPTHRVG 130
>gi|296454555|ref|YP_003661698.1| DNA ligase [Bifidobacterium longum subsp. longum JDM301]
gi|296183986|gb|ADH00868.1| DNA ligase, NAD-dependent [Bifidobacterium longum subsp. longum
JDM301]
Length = 920
Score = 77.6 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 9/96 (9%)
Query: 32 AKFLPNKRALESWLDKAKK---------VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDN 82
A+F P + L V +++ A + Q YY D+
Sbjct: 26 ARFAPGSEQWIAALQPTDDDAIRLDRFDVNTMTAEAAARLWARVAAWVESDQIAYYIDDS 85
Query: 83 PLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
P+ +D YD L+ L+ FP L + P + VG
Sbjct: 86 PVSSDAAYDARMRCLERLEAAFPSLDNPQSPTHRVG 121
>gi|328946560|gb|EGG40699.1| NAD-dependent DNA ligase LigA [Streptococcus sanguinis SK1087]
Length = 652
Score = 77.6 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 27/59 (45%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LVK+ + YY D P +D YDR+ L L+E++ D P + VG
Sbjct: 2 KERMSELVKLLNRYAHEYYTADRPSVSDSEYDRLYRELVELEEKYSTDILPDSPTHRVG 60
>gi|294054681|ref|YP_003548339.1| DNA ligase, NAD-dependent [Coraliomargarita akajimensis DSM 45221]
gi|293614014|gb|ADE54169.1| DNA ligase, NAD-dependent [Coraliomargarita akajimensis DSM 45221]
Length = 711
Score = 77.6 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 27/58 (46%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E+ L H + YY+ P D YDR+ RL AL+ Q PEL P TVG
Sbjct: 54 KEIAQLRAAIEKHDRLYYKKAQPEIDDQAYDRLKARLTALESQNPELDFGSSPTQTVG 111
>gi|313207091|ref|YP_004046268.1| DNA ligase, naD-dependent [Riemerella anatipestifer DSM 15868]
gi|312446407|gb|ADQ82762.1| DNA ligase, NAD-dependent [Riemerella anatipestifer DSM 15868]
gi|315022511|gb|EFT35538.1| DNA ligase [Riemerella anatipestifer RA-YM]
Length = 669
Score = 77.6 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+S + ++E L + H YY LD P +D +D + E L L+ +PE D + P
Sbjct: 1 MSLDDIKHKIEELREELHQHNYNYYVLDTPSISDYEFDMMLEELKELELAYPEFADNNSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|322689624|ref|YP_004209358.1| DNA ligase [Bifidobacterium longum subsp. infantis 157F]
gi|322691585|ref|YP_004221155.1| DNA ligase [Bifidobacterium longum subsp. longum JCM 1217]
gi|291516189|emb|CBK69805.1| DNA ligase, NAD-dependent [Bifidobacterium longum subsp. longum F8]
gi|320456441|dbj|BAJ67063.1| DNA ligase [Bifidobacterium longum subsp. longum JCM 1217]
gi|320460960|dbj|BAJ71580.1| DNA ligase [Bifidobacterium longum subsp. infantis 157F]
Length = 920
Score = 77.2 bits (189), Expect = 6e-13, Method: Composition-based stats.
Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 9/96 (9%)
Query: 32 AKFLPNKRALESWLDKAKK---------VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDN 82
A+F P + L V +++ A + Q YY D+
Sbjct: 26 ARFAPGSEQWIAALQPTDDDAIRLDRFDVNTMTAEAAARLWARVAAWVESDQIAYYIDDS 85
Query: 83 PLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
P+ +D YD L+ L+ FP L + P + VG
Sbjct: 86 PVSSDAAYDARMRCLERLEAAFPSLDNPQSPTHRVG 121
>gi|227546782|ref|ZP_03976831.1| DNA ligase (NAD(+)) [Bifidobacterium longum subsp. infantis ATCC
55813]
gi|227212744|gb|EEI80625.1| DNA ligase (NAD(+)) [Bifidobacterium longum subsp. infantis ATCC
55813]
Length = 920
Score = 77.2 bits (189), Expect = 6e-13, Method: Composition-based stats.
Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 9/96 (9%)
Query: 32 AKFLPNKRALESWLDKAKK---------VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDN 82
A+F P + L V +++ A + Q YY D+
Sbjct: 26 ARFAPGSEQWIAALQPTDDDAIRLDRFDVNTMTAEAAARLWARVAAWVESDQIAYYIDDS 85
Query: 83 PLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
P+ +D YD L+ L+ FP L + P + VG
Sbjct: 86 PVSSDAAYDARMRCLERLEAAFPSLDNPQSPTHRVG 121
>gi|239620760|ref|ZP_04663791.1| LigA [Bifidobacterium longum subsp. infantis CCUG 52486]
gi|312132368|ref|YP_003999707.1| lig [Bifidobacterium longum subsp. longum BBMN68]
gi|239516336|gb|EEQ56203.1| LigA [Bifidobacterium longum subsp. infantis CCUG 52486]
gi|311772424|gb|ADQ01912.1| Lig [Bifidobacterium longum subsp. longum BBMN68]
Length = 920
Score = 77.2 bits (189), Expect = 6e-13, Method: Composition-based stats.
Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 9/96 (9%)
Query: 32 AKFLPNKRALESWLDKAKK---------VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDN 82
A+F P + L V +++ A + Q YY D+
Sbjct: 26 ARFAPGSEQWIAALQPTDDDAIRLDRFDVNTMTAEAAARLWARVAAWVESDQIAYYIDDS 85
Query: 83 PLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
P+ +D YD L+ L+ FP L + P + VG
Sbjct: 86 PVSSDAAYDARMRCLERLEAAFPSLDNPQSPTHRVG 121
>gi|317481657|ref|ZP_07940691.1| DNA ligase [Bifidobacterium sp. 12_1_47BFAA]
gi|316916889|gb|EFV38277.1| DNA ligase [Bifidobacterium sp. 12_1_47BFAA]
Length = 920
Score = 77.2 bits (189), Expect = 6e-13, Method: Composition-based stats.
Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 9/96 (9%)
Query: 32 AKFLPNKRALESWLDKAKK---------VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDN 82
A+F P + L V +++ A + Q YY D+
Sbjct: 26 ARFAPGSEQWIAALQPTDDDAIRLDRFDVNTMTAEAAARLWARVAAWVESDQIAYYIDDS 85
Query: 83 PLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
P+ +D YD L+ L+ FP L + P + VG
Sbjct: 86 PVSSDAAYDARMRCLERLEAAFPSLDNPQSPTHRVG 121
>gi|330444629|ref|YP_004377615.1| DNA ligase [Chlamydophila pecorum E58]
gi|328807739|gb|AEB41912.1| DNA ligase, NAD-dependent [Chlamydophila pecorum E58]
Length = 666
Score = 77.2 bits (189), Expect = 6e-13, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 22/54 (40%)
Query: 65 YLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L + H YY L PL +D YD L +++Q PE P +G
Sbjct: 16 ELCQELEKHDYQYYVLHAPLISDYDYDMKMRELQLIEKQHPEWRVPWSPTLRLG 69
>gi|225352232|ref|ZP_03743255.1| hypothetical protein BIFPSEUDO_03848 [Bifidobacterium
pseudocatenulatum DSM 20438]
gi|225157479|gb|EEG70818.1| hypothetical protein BIFPSEUDO_03848 [Bifidobacterium
pseudocatenulatum DSM 20438]
Length = 909
Score = 77.2 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 29/69 (42%)
Query: 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
V+S+S A + Q YY D P+ +D YD L AL+ QFP L
Sbjct: 82 DVSSISAEAAARLWARVAAWVESDQIAYYIDDAPVSSDAAYDARIRCLQALEAQFPSLDS 141
Query: 110 EDHPWNTVG 118
P + VG
Sbjct: 142 AQSPTHRVG 150
>gi|149203841|ref|ZP_01880810.1| DNA ligase, NAD-dependent [Roseovarius sp. TM1035]
gi|149142958|gb|EDM31000.1| DNA ligase, NAD-dependent [Roseovarius sp. TM1035]
Length = 717
Score = 77.2 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 36/82 (43%)
Query: 37 NKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSER 96
R E + V L++ EA E+ L + + Y+ D P TD YD + R
Sbjct: 4 ASRISEGPMTDKLAVEDLTESEAQAELGRLAALLAAANRAYHTEDAPEITDAAYDALKAR 63
Query: 97 LDALQEQFPELFDEDHPWNTVG 118
A++ +FP L +D + VG
Sbjct: 64 NAAIEARFPTLKRDDSASDQVG 85
>gi|325335472|gb|ADZ11746.1| NAD-dependent DNA ligase (contains BRCT domain type II) [Riemerella
anatipestifer RA-GD]
Length = 669
Score = 77.2 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+S + ++E L + H YY LD P +D +D + E L L+ +PE D + P
Sbjct: 1 MSLDDIKHKIEELREELHQHNYNYYVLDTPSISDYEFDMMLEELKELELAYPEFADNNSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQRVG 65
>gi|23464680|ref|NP_695283.1| LigA [Bifidobacterium longum NCC2705]
gi|81754681|sp|Q8G830|DNLJ_BIFLO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|23325242|gb|AAN23919.1| LigA [Bifidobacterium longum NCC2705]
Length = 920
Score = 77.2 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 9/96 (9%)
Query: 32 AKFLPNKRALESWLDKAKK---------VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDN 82
A+F P + L V +++ A + Q YY D+
Sbjct: 26 ARFAPGSEQWIAALQPTDDDAIRLDRFDVNTMTAEAAARLWARVAAWVESDQIAYYIDDS 85
Query: 83 PLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
P+ +D YD L+ L+ FP L + P + VG
Sbjct: 86 PVSSDAAYDARMRCLERLEAAFPSLDNPQSPTHRVG 121
>gi|213691626|ref|YP_002322212.1| DNA ligase, NAD-dependent [Bifidobacterium longum subsp. infantis
ATCC 15697]
gi|254781260|sp|B7GPV4|DNLJ_BIFLI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|213523087|gb|ACJ51834.1| DNA ligase, NAD-dependent [Bifidobacterium longum subsp. infantis
ATCC 15697]
gi|320457713|dbj|BAJ68334.1| DNA ligase [Bifidobacterium longum subsp. infantis ATCC 15697]
Length = 921
Score = 77.2 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 9/96 (9%)
Query: 32 AKFLPNKRALESWLDKAKK---------VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDN 82
A+F P + L V +++ A + Q YY D+
Sbjct: 26 ARFAPGSEQWIAALQPTDDDAIRLDRFDVNTMTAEAAARLWARVAAWVESDQIAYYIDDS 85
Query: 83 PLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
P+ +D YD L+ L+ FP L + P + VG
Sbjct: 86 PVSSDAAYDARMRCLERLEAAFPSLDNPQSPTHRVG 121
>gi|26553637|ref|NP_757571.1| NAD-dependent DNA ligase [Mycoplasma penetrans HF-2]
gi|81748016|sp|Q8EWL9|DNLJ_MYCPE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|26453643|dbj|BAC43975.1| NAD-dependent DNA ligase [Mycoplasma penetrans HF-2]
Length = 701
Score = 77.2 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 30/64 (46%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
+ E + ++ L K + YY L+NP +D YD + L L+ Q+PE + P
Sbjct: 18 NNKEILNRIQNLRKNLNQYNYEYYGLENPSVSDYEYDMCLKELIQLETQYPEFDSPNSPS 77
Query: 115 NTVG 118
VG
Sbjct: 78 KKVG 81
>gi|329116783|ref|ZP_08245500.1| DNA ligase (NAD+) [Streptococcus parauberis NCFD 2020]
gi|326907188|gb|EGE54102.1| DNA ligase (NAD+) [Streptococcus parauberis NCFD 2020]
Length = 654
Score = 77.2 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L + ++ YY D+P +D YDR+ L L+E++PE +D P VG
Sbjct: 2 EKRIKELTDLLNQYRLEYYTNDSPSVSDQDYDRLYHELVQLEEEYPEYALKDSPTQAVG 60
>gi|311086964|gb|ADP67044.1| DNA ligase (NAD+) [Buchnera aphidicola str. JF99 (Acyrthosiphon
pisum)]
Length = 678
Score = 77.2 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 31/59 (52%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++E L KI L ++ +Y+ L+ + +D YD + +L L+ + EL D P VG
Sbjct: 5 KDKIEKLRKILLKYEYFYHTLNQSIISDAEYDYLFRQLYELELKNKELIPSDSPTQKVG 63
>gi|219682005|ref|YP_002468389.1| DNA ligase (NAD+) [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
pisum)]
gi|254781272|sp|B8D6X9|DNLJ_BUCAT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|219621738|gb|ACL29894.1| DNA ligase (NAD+) [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
pisum)]
gi|311085811|gb|ADP65893.1| DNA ligase (NAD+) [Buchnera aphidicola str. LL01 (Acyrthosiphon
pisum)]
gi|311086384|gb|ADP66465.1| DNA ligase (NAD+) [Buchnera aphidicola str. TLW03 (Acyrthosiphon
pisum)]
Length = 676
Score = 77.2 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 31/59 (52%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++E L KI L ++ +Y+ L+ + +D YD + +L L+ + EL D P VG
Sbjct: 5 KDKIEKLRKILLKYEYFYHTLNQSIISDAEYDYLFRQLYELELKNKELIPSDSPTQKVG 63
>gi|15616692|ref|NP_239904.1| DNA ligase (NAD+) [Buchnera aphidicola str. APS (Acyrthosiphon
pisum)]
gi|11132251|sp|P57172|DNLJ_BUCAI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|25294009|pir||F84937 DNA ligase (NAD) (EC 6.5.1.2) [imported] - Buchnera sp. (strain
APS)
gi|10038755|dbj|BAB12790.1| DNA ligase (NAD+) [Buchnera aphidicola str. APS (Acyrthosiphon
pisum)]
Length = 675
Score = 77.2 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 31/59 (52%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++E L KI L ++ +Y+ L+ + +D YD + +L L+ + EL D P VG
Sbjct: 5 KDKIEKLRKILLKYEYFYHTLNQSIISDAEYDYLFRQLYELELKNKELIPSDSPTQKVG 63
>gi|303254175|ref|ZP_07340287.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae BS455]
gi|302598846|gb|EFL65880.1| NAD-dependent DNA ligase LigA [Streptococcus pneumoniae BS455]
Length = 652
Score = 77.2 bits (189), Expect = 8e-13, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ LV + + YY DNP +D YD + L L+ +P+ D P + VG
Sbjct: 3 KRMNELVALLNRYATEYYTSDNPSVSDSEYDCLYRELVELETAYPDQVLADSPTHRVG 60
>gi|256420112|ref|YP_003120765.1| DNA ligase, NAD-dependent [Chitinophaga pinensis DSM 2588]
gi|256035020|gb|ACU58564.1| DNA ligase, NAD-dependent [Chitinophaga pinensis DSM 2588]
Length = 709
Score = 76.8 bits (188), Expect = 8e-13, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
Query: 30 LEAKFLPNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGL 89
+E L + L L + + + L +E L ++ +++ YY +P+ +D
Sbjct: 6 IEITLLQLAKDLLGKLQQKETIQDLDST-----LENLRRVIIYNDWRYYVQSDPVLSDYE 60
Query: 90 YDRVSERLDALQEQFPELFDEDHPWNTV 117
YD++ L L+ P+ D P V
Sbjct: 61 YDQLFAWLKELETANPDKVSADSPTQRV 88
>gi|86142854|ref|ZP_01061293.1| DNA ligase [Leeuwenhoekiella blandensis MED217]
gi|85830886|gb|EAQ49344.1| DNA ligase [Leeuwenhoekiella blandensis MED217]
Length = 663
Score = 76.8 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 29/60 (48%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
A ++E L + + YY LD P D +D+ + L ++ + PE +D + P VG
Sbjct: 3 AQEKIEALRQELRQYNYEYYVLDKPQVDDYTFDQKLKELQEMEAKHPEFYDANSPTLRVG 62
>gi|319956399|ref|YP_004167662.1| DNA ligase, nad-dependent [Nitratifractor salsuginis DSM 16511]
gi|319418803|gb|ADV45913.1| DNA ligase, NAD-dependent [Nitratifractor salsuginis DSM 16511]
Length = 657
Score = 76.8 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E E V YY DNP TD +YDR+ ++A ++ P+ D P VG
Sbjct: 7 EYEEAVAKLKRWAYAYYVEDNPEVTDEVYDRLYREVEAYEKAHPDEIDPTSPTQRVG 63
>gi|291288208|ref|YP_003505024.1| DNA ligase, NAD-dependent [Denitrovibrio acetiphilus DSM 12809]
gi|290885368|gb|ADD69068.1| DNA ligase, NAD-dependent [Denitrovibrio acetiphilus DSM 12809]
Length = 652
Score = 76.4 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 26/55 (47%)
Query: 64 EYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV ++ K YY D+P+ D YD++ L ++ + P + D P VG
Sbjct: 4 RELVDKLNYYSKKYYVEDDPVVADAEYDKLYNELLRIEAEDPSIISHDSPSQRVG 58
>gi|317180385|dbj|BAJ58171.1| NAD-dependent DNA ligase LigA [Helicobacter pylori F32]
Length = 656
Score = 76.4 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S+ E + +EYL HH YY LD+P+ +D +YD++ + L A +E+ P + P
Sbjct: 4 SQKEYLERIEYL-NTLSHH---YYNLDDPIVSDAVYDKLYQELKAYEEKNPNSIQANSPT 59
Query: 115 NTVG 118
VG
Sbjct: 60 QKVG 63
>gi|311064086|ref|YP_003970811.1| NAD-dependent DNA ligase [Bifidobacterium bifidum PRL2010]
gi|310866405|gb|ADP35774.1| LigA NAD-dependent DNA ligase [Bifidobacterium bifidum PRL2010]
Length = 896
Score = 76.4 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 37/96 (38%), Gaps = 9/96 (9%)
Query: 32 AKFLPNKRALESWL-----DKAK----KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDN 82
A+F P + L D A+ V+SLS A + Q YY D
Sbjct: 36 ARFAPGSSQWVAALQSTDADAARLDRLDVSSLSNEVAARLWARVAAWVEADQIAYYIDDA 95
Query: 83 PLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
P+ +D YD L L+ +FP L P + VG
Sbjct: 96 PVSSDAAYDARLRCLQRLEAEFPSLDSPQSPTHRVG 131
>gi|67920947|ref|ZP_00514466.1| NAD-dependent DNA ligase [Crocosphaera watsonii WH 8501]
gi|67857064|gb|EAM52304.1| NAD-dependent DNA ligase [Crocosphaera watsonii WH 8501]
Length = 670
Score = 76.4 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 74 QKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LDNP+ D +YD++ LD L+++ L D P VG
Sbjct: 17 NYAYYVLDNPIMEDAVYDQLYRELDTLEKENTHLITSDSPTQRVG 61
>gi|296046593|gb|ADG86438.1| NAD-dependent DNA ligase [synthetic construct]
Length = 689
Score = 76.4 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+S+ E I +H+ YY LD P D YDR+ L L++ PEL D P
Sbjct: 1 MSEKEKKISQLQQQLNQYNHE--YYVLDQPSVPDAEYDRLMTALIDLEKTNPELKTIDSP 58
Query: 114 WNTVG 118
VG
Sbjct: 59 SQKVG 63
>gi|224437677|ref|ZP_03658624.1| NAD-dependent DNA ligase LigA [Helicobacter cinaedi CCUG 18818]
gi|313144124|ref|ZP_07806317.1| DNA ligase [Helicobacter cinaedi CCUG 18818]
gi|313129155|gb|EFR46772.1| DNA ligase [Helicobacter cinaedi CCUG 18818]
Length = 651
Score = 76.4 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+++ E ++ L K+A H YY LD+P+ TD YD + ++ + Q P L + P
Sbjct: 1 MTQQEYSSNIQKLTKMAYH----YYVLDDPIATDSQYDELYHQVLNFERQNPILISPNSP 56
Query: 114 WNTVG 118
VG
Sbjct: 57 TQRVG 61
>gi|310287227|ref|YP_003938485.1| NAD-dependent DNA ligase [Bifidobacterium bifidum S17]
gi|309251163|gb|ADO52911.1| NAD-dependent DNA ligase [Bifidobacterium bifidum S17]
Length = 900
Score = 76.4 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 37/96 (38%), Gaps = 9/96 (9%)
Query: 32 AKFLPNKRALESWL-----DKAK----KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDN 82
A+F P + L D A+ V+SLS A + Q YY D
Sbjct: 36 ARFAPGSSQWVAALQSTDADAARLDRLDVSSLSNEVAARLWARVAAWVEADQIAYYIDDA 95
Query: 83 PLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
P+ +D YD L L+ +FP L P + VG
Sbjct: 96 PVSSDAAYDARLRCLQRLEAEFPSLDSPQSPTHRVG 131
>gi|295090337|emb|CBK76444.1| DNA ligase, NAD-dependent [Clostridium cf. saccharolyticum K10]
Length = 676
Score = 76.4 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
+++ LV+ H+ YY L+ P +D YDR+ ++L+ L+E+ + + P TVGY
Sbjct: 15 ADKIKELVQTLNRHRHAYYNLNAPEISDAEYDRMYDQLERLEEE-TGIIYSNSPTQTVGY 73
>gi|86131748|ref|ZP_01050345.1| DNA ligase (NAD(+)) [Dokdonia donghaensis MED134]
gi|85817570|gb|EAQ38744.1| DNA ligase (NAD(+)) [Dokdonia donghaensis MED134]
Length = 664
Score = 76.4 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L + H YY LD P +D +D+ E+L AL+ P D + P + VG
Sbjct: 3 IEEQILQLRQELREHNYNYYTLDTPTISDFEFDKKLEQLKALELANPAYDDPNSPTHRVG 62
>gi|254781172|ref|YP_003065585.1| NAD-dependent DNA ligase LigA [Candidatus Liberibacter asiaticus
str. psy62]
gi|254040849|gb|ACT57645.1| NAD-dependent DNA ligase LigA [Candidatus Liberibacter asiaticus
str. psy62]
Length = 731
Score = 76.4 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
+ +LS +A E+ L + +H YY+ P+ D YD + R DA+ FP+L
Sbjct: 8 PIEALSIEQARKELSSLEQEISYHDDCYYQYSKPIILDSEYDALKRRCDAIAHAFPDLAR 67
Query: 110 ---EDHPWNTVG 118
+ P N +G
Sbjct: 68 SEDPNGPLNKIG 79
>gi|308811310|ref|XP_003082963.1| COG0272: NAD-dependent DNA ligase (ISS) [Ostreococcus tauri]
gi|116054841|emb|CAL56918.1| COG0272: NAD-dependent DNA ligase (ISS) [Ostreococcus tauri]
Length = 808
Score = 76.4 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 29/73 (39%)
Query: 46 DKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFP 105
+ SL+ EA E+E L + HH + YY + +D YD + R A++ P
Sbjct: 57 SSTRAPDSLTVDEARRELERLNEELAHHDRSYYNDGEGVISDSEYDSLRARYLAIERLHP 116
Query: 106 ELFDEDHPWNTVG 118
VG
Sbjct: 117 SAARALGASARVG 129
>gi|310644240|ref|YP_003948999.1| DNA ligase, nad-dependent [Paenibacillus polymyxa SC2]
gi|309249191|gb|ADO58758.1| DNA ligase, NAD-dependent [Paenibacillus polymyxa SC2]
Length = 671
Score = 76.0 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+E LV + YY LD+P +D YD + + L AL++ L D P VG
Sbjct: 6 RMEQLVAELNTYNYHYYTLDDPQISDKEYDVLYDELVALEQT-SGLVLPDSPTQRVG 61
>gi|332673586|gb|AEE70403.1| NAD-dependent DNA ligase LigA [Helicobacter pylori 83]
Length = 656
Score = 76.0 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S+ E + +EYL HH YY LD+P+ +D +YD + + L A +E+ P + P
Sbjct: 4 SQKEYLERIEYL-NTLSHH---YYNLDDPIVSDAVYDELYQELKAYEEKNPNSIQANSPT 59
Query: 115 NTVG 118
VG
Sbjct: 60 QKVG 63
>gi|330994412|ref|ZP_08318338.1| DNA ligase [Gluconacetobacter sp. SXCC-1]
gi|329758538|gb|EGG75056.1| DNA ligase [Gluconacetobacter sp. SXCC-1]
Length = 712
Score = 76.0 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 2/85 (2%)
Query: 36 PNKRALESWLDKAKKVTSLSKGE--AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRV 93
R E ++ + A + L + Y++ D PL D YD +
Sbjct: 6 EAPRPAEQARRLLADYATMEQDAPNAEKALTQLATLLPALDAAYHQHDAPLVDDATYDSL 65
Query: 94 SERLDALQEQFPELFDEDHPWNTVG 118
+ L+ +FP+L D P VG
Sbjct: 66 RQLNTRLEARFPDLRRTDSPAQQVG 90
>gi|255038855|ref|YP_003089476.1| DNA ligase, NAD-dependent [Dyadobacter fermentans DSM 18053]
gi|254951611|gb|ACT96311.1| DNA ligase, NAD-dependent [Dyadobacter fermentans DSM 18053]
Length = 695
Score = 76.0 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 13/59 (22%), Positives = 29/59 (49%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L + ++ YY+ +D +D++ + L AL+ ++P+ +D P VG
Sbjct: 4 EQRIQELSEKLHYYNDRYYQDSVSEISDYEFDQLLKELQALESEYPQFRQDDSPTQRVG 62
>gi|224282769|ref|ZP_03646091.1| LigA [Bifidobacterium bifidum NCIMB 41171]
gi|313139930|ref|ZP_07802123.1| LigA [Bifidobacterium bifidum NCIMB 41171]
gi|313132440|gb|EFR50057.1| LigA [Bifidobacterium bifidum NCIMB 41171]
Length = 900
Score = 76.0 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Query: 35 LPNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVS 94
L + A + LD+ V+SLS A + Q YY D P+ +D YD
Sbjct: 49 LQSTDADAARLDRL-DVSSLSNEVAARLWARVAAWVEADQIAYYIDDAPVSSDAAYDARL 107
Query: 95 ERLDALQEQFPELFDEDHPWNTVG 118
L L+ +FP L P + VG
Sbjct: 108 RCLQRLEAEFPSLDSPQSPTHRVG 131
>gi|150388772|ref|YP_001318821.1| NAD-dependent DNA ligase LigA [Alkaliphilus metalliredigens QYMF]
gi|190359225|sp|A6TLU4|DNLJ_ALKMQ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|149948634|gb|ABR47162.1| DNA ligase, NAD-dependent [Alkaliphilus metalliredigens QYMF]
Length = 660
Score = 76.0 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
M E+E LVK + YY LD P+ +D YD + ++L L+E+ D P VG
Sbjct: 4 MKEMEQLVKQLNEYSYKYYVLDQPIVSDKEYDSLYDQLIELEEKTGH-VLLDSPTQRVG 61
>gi|150025890|ref|YP_001296716.1| DNA ligase (NAD+) [Flavobacterium psychrophilum JIP02/86]
gi|166215404|sp|A6H0N9|DNLJ_FLAPJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|149772431|emb|CAL43913.1| DNA ligase (NAD+) [Flavobacterium psychrophilum JIP02/86]
Length = 666
Score = 76.0 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 31/60 (51%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ +++ L + H YY LDNP +D +D L +L++ PE FDE+ P VG
Sbjct: 3 VLQKIQSLREELNLHNYNYYVLDNPTISDYDFDVKLTDLQSLEKNNPEYFDENSPTQRVG 62
>gi|23336066|ref|ZP_00121295.1| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II)
[Bifidobacterium longum DJO10A]
gi|189438929|ref|YP_001954010.1| NAD-dependent DNA ligase [Bifidobacterium longum DJO10A]
gi|254781259|sp|B3DPR8|DNLJ_BIFLD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|189427364|gb|ACD97512.1| NAD-dependent DNA ligase [Bifidobacterium longum DJO10A]
Length = 920
Score = 76.0 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 22/96 (22%), Positives = 34/96 (35%), Gaps = 9/96 (9%)
Query: 32 AKFLPNKRALESWLDKAKK---------VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDN 82
A+F P + L V ++ A + Q YY D+
Sbjct: 26 ARFAPGSEQWIAALQPTDDDAIRLDRFDVNMMTAEAAARLWARVAAWVESDQIAYYIDDS 85
Query: 83 PLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
P+ +D YD L+ L+ FP L + P + VG
Sbjct: 86 PVSSDAAYDARMRCLERLEAAFPSLDNPQSPTHRVG 121
>gi|315122567|ref|YP_004063056.1| NAD-dependent DNA ligase LigA [Candidatus Liberibacter solanacearum
CLso-ZC1]
gi|313495969|gb|ADR52568.1| NAD-dependent DNA ligase LigA [Candidatus Liberibacter solanacearum
CLso-ZC1]
Length = 739
Score = 76.0 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
K + LS +A E+ +L +H YY+ P D YD++ ER DA+ FPE
Sbjct: 5 KFIPIEELSPEQAKKELSFLQHEISYHDDLYYQHSQPKILDFEYDQLKERCDAIARAFPE 64
Query: 107 LFD-EDH--PWNTVG 118
D P N +G
Sbjct: 65 FASLADSNGPLNKIG 79
>gi|224372650|ref|YP_002607022.1| NAD-dependent DNA ligase LigA [Nautilia profundicola AmH]
gi|254781379|sp|B9L8R4|DNLJ_NAUPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|223589900|gb|ACM93636.1| DNA ligase, NAD-dependent [Nautilia profundicola AmH]
Length = 656
Score = 76.0 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 67 VKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
V +YY LDNPL TD YD++ ++ +++ P+ D P VG
Sbjct: 12 VDTLKKWAYYYYVLDNPLVTDEEYDKLYHEVEEYEKKHPDKIDPTSPTQRVG 63
>gi|317010835|gb|ADU84582.1| NAD-dependent DNA ligase LigA [Helicobacter pylori SouthAfrica7]
Length = 657
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S+ E + +EYL HH YY LD P+ +D +YD + + L A +E+ P + P
Sbjct: 4 SQKEYLERIEYL-NTLSHH---YYNLDEPIVSDAVYDELYQELKAYEEENPSYIQANSPT 59
Query: 115 NTVG 118
VG
Sbjct: 60 QKVG 63
>gi|315586702|gb|ADU41083.1| NAD-dependent DNA ligase LigA [Helicobacter pylori 35A]
Length = 656
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S+ E + +EYL HH YY LD+P+ +D +YD + + L A +E+ P + P
Sbjct: 4 SQKEYLERIEYL-NTLSHH---YYNLDDPIVSDAVYDELYQELKAYEEKNPNSIQANSPT 59
Query: 115 NTVG 118
VG
Sbjct: 60 QKVG 63
>gi|317177554|dbj|BAJ55343.1| NAD-dependent DNA ligase LigA [Helicobacter pylori F16]
Length = 656
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S+ E + +EYL HH YY LD+P+ +D +YD + + L A +E+ P + P
Sbjct: 4 SQKEYLERIEYL-NTLSHH---YYNLDDPIVSDAVYDELYQELKAYEEKNPNSIQANSPT 59
Query: 115 NTVG 118
VG
Sbjct: 60 QKVG 63
>gi|304405678|ref|ZP_07387337.1| DNA ligase, NAD-dependent [Paenibacillus curdlanolyticus YK9]
gi|304345717|gb|EFM11552.1| DNA ligase, NAD-dependent [Paenibacillus curdlanolyticus YK9]
Length = 689
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 41 LESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDAL 100
+ES L++ + + + + + + L H YY LD P +D +D++ + L AL
Sbjct: 1 MESRLNEQEAAIAANPQQ-LERMRKLADEIERHSYSYYTLDRPTISDAEFDKLYDELVAL 59
Query: 101 QEQFPELFDEDHPWNTVG 118
++ + E P VG
Sbjct: 60 EKTI-GIVLEHSPTQRVG 76
>gi|23013561|ref|ZP_00053441.1| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II)
[Magnetospirillum magnetotacticum MS-1]
Length = 696
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
+ L+ EA IE LV+ + + Y+ D PL D +YD RL ++ +FPEL
Sbjct: 7 PIDVLTPFEARIEHAELVEKLVSWDEAYHGQDAPLVPDDVYDGAKRRLSGIEARFPEL-A 65
Query: 110 EDHPWN-TVG 118
P VG
Sbjct: 66 AKSPIKDKVG 75
>gi|67458584|ref|YP_246208.1| NAD-dependent DNA ligase LigA [Rickettsia felis URRWXCal2]
gi|67004117|gb|AAY61043.1| DNA ligase, NAD-dependent [Rickettsia felis URRWXCal2]
Length = 706
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 40/85 (47%)
Query: 34 FLPNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRV 93
+ ++L+ + + +S+ EA +E L + YY DNPL +D YD++
Sbjct: 4 LINTTKSLKKHDFLMQNIDLISEEEAKKLLEELADKIAAYNHAYYIEDNPLVSDSEYDQL 63
Query: 94 SERLDALQEQFPELFDEDHPWNTVG 118
L+++FP L E+ P +G
Sbjct: 64 FNTNLKLEQKFPHLVLENSPSKKIG 88
>gi|297379814|gb|ADI34701.1| DNA ligase, NAD-dependent [Helicobacter pylori v225d]
Length = 656
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S+ E + +EYL HH YY LD+P+ +D +YD + + L A +E+ P + P
Sbjct: 4 SQKEYLERIEYL-NTLSHH---YYNLDDPIVSDAVYDELYQELKAYEEKNPNSIQANSPT 59
Query: 115 NTVG 118
VG
Sbjct: 60 QKVG 63
>gi|315656502|ref|ZP_07909391.1| NAD-dependent DNA ligase LigA [Mobiluncus curtisii subsp. holmesii
ATCC 35242]
gi|315493061|gb|EFU82663.1| NAD-dependent DNA ligase LigA [Mobiluncus curtisii subsp. holmesii
ATCC 35242]
Length = 799
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 6/68 (8%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPL-----FTDGLYDRVSERLDALQEQFPELFDE 110
A+ + LV + YY P +D YD + +L L+ +P+L
Sbjct: 9 PESALAQHADLVDQIEAARTDYY-DQTPETGVTRLSDAEYDALFVQLQLLEAAYPDLVTP 67
Query: 111 DHPWNTVG 118
D P TVG
Sbjct: 68 DSPTQTVG 75
>gi|315655583|ref|ZP_07908481.1| NAD-dependent DNA ligase LigA [Mobiluncus curtisii ATCC 51333]
gi|315489647|gb|EFU79274.1| NAD-dependent DNA ligase LigA [Mobiluncus curtisii ATCC 51333]
Length = 794
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 6/68 (8%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPL-----FTDGLYDRVSERLDALQEQFPELFDE 110
A+ + LV + YY P +D YD + +L L+ +P+L
Sbjct: 8 PESALAQHADLVDQIEAARTDYY-DQTPETGVTRLSDAEYDALFVQLQLLEAAYPDLVTP 66
Query: 111 DHPWNTVG 118
D P TVG
Sbjct: 67 DSPTQTVG 74
>gi|304390721|ref|ZP_07372673.1| NAD-dependent DNA ligase LigA [Mobiluncus curtisii subsp. curtisii
ATCC 35241]
gi|304325604|gb|EFL92850.1| NAD-dependent DNA ligase LigA [Mobiluncus curtisii subsp. curtisii
ATCC 35241]
Length = 799
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 6/68 (8%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPL-----FTDGLYDRVSERLDALQEQFPELFDE 110
A+ + LV + YY P +D YD + +L L+ +P+L
Sbjct: 9 PESALAQHADLVDQIEAARTDYY-DQTPETGVTRLSDAEYDALFVQLQLLEAAYPDLVTP 67
Query: 111 DHPWNTVG 118
D P TVG
Sbjct: 68 DSPTQTVG 75
>gi|298345134|ref|YP_003717821.1| DNA ligase (NAD(+)) [Mobiluncus curtisii ATCC 43063]
gi|298235195|gb|ADI66327.1| DNA ligase (NAD(+)) [Mobiluncus curtisii ATCC 43063]
Length = 799
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 6/68 (8%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPL-----FTDGLYDRVSERLDALQEQFPELFDE 110
A+ + LV + YY P +D YD + +L L+ +P+L
Sbjct: 9 PESALAQHADLVDQIEAARTDYY-DQTPETGVTRLSDAEYDALFVQLQLLEAAYPDLVTP 67
Query: 111 DHPWNTVG 118
D P TVG
Sbjct: 68 DSPTQTVG 75
>gi|296046569|gb|ADG86426.1| NAD-dependent DNA ligase [Francisella novicida]
Length = 689
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ E I +H+ YY LD P D YDR+ L L++ PEL D P
Sbjct: 1 MTPVEKKISQLQQQLNQYNHE--YYVLDQPSVPDAEYDRLMTALIDLEKTNPELKTIDSP 58
Query: 114 WNTVG 118
VG
Sbjct: 59 SQKVG 63
>gi|261839558|gb|ACX99323.1| NAD-dependent DNA ligase LigA [Helicobacter pylori 52]
Length = 657
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S+ E + +EYL HH YY LD+P+ +D +YD + + L A +E+ P + P
Sbjct: 4 SQKEYLERIEYL-NTLSHH---YYNLDDPIVSDAVYDELYQELKAYEEKNPNSIQANSPT 59
Query: 115 NTVG 118
VG
Sbjct: 60 QKVG 63
>gi|291519153|emb|CBK74374.1| DNA ligase, NAD-dependent [Butyrivibrio fibrisolvens 16/4]
Length = 651
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY D P TD YD++ +L A +++ PE D P +G
Sbjct: 4 YYNDDEPEITDFEYDQLMLQLKAAEKEHPEWVTPDSPTQKIG 45
>gi|71281008|ref|YP_270140.1| DNA ligase, NAD-dependent [Colwellia psychrerythraea 34H]
gi|123774873|sp|Q47YI0|DNLJ_COLP3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|71146748|gb|AAZ27221.1| DNA ligase, NAD-dependent [Colwellia psychrerythraea 34H]
Length = 689
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 21/44 (47%)
Query: 75 KWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY LD P D YDR+ L L++ PEL D P VG
Sbjct: 20 HEYYVLDQPSVPDAEYDRLMTALIDLEKTNPELKTIDSPSQKVG 63
>gi|257069044|ref|YP_003155299.1| DNA ligase, NAD-dependent [Brachybacterium faecium DSM 4810]
gi|256559862|gb|ACU85709.1| DNA ligase, NAD-dependent [Brachybacterium faecium DSM 4810]
Length = 871
Score = 75.3 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 27/60 (45%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
A + L + YY D P D YD + + L AL+E P+L ED P TVG
Sbjct: 21 AQQRIAALTARIEQARVDYYEHDAPTMADAEYDELEKELRALEEANPQLAAEDSPTRTVG 80
>gi|73667316|ref|YP_303332.1| NAD-dependent DNA ligase [Ehrlichia canis str. Jake]
gi|123732189|sp|Q3YRC1|DNLJ_EHRCJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|72394457|gb|AAZ68734.1| NAD-dependent DNA ligase [Ehrlichia canis str. Jake]
Length = 677
Score = 75.3 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 34/65 (52%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + EA +E++ L HH YY DNP TD YD + + + + E FPEL ++
Sbjct: 1 MKQEEAKLELDKLNSQIQHHDFLYYTQDNPQITDAEYDVLCHKRNLILESFPELASNNNY 60
Query: 114 WNTVG 118
+ VG
Sbjct: 61 QDNVG 65
>gi|294155884|ref|YP_003560268.1| DNA ligase (NAD(+)) [Mycoplasma crocodyli MP145]
gi|291600422|gb|ADE19918.1| DNA ligase (NAD(+)) [Mycoplasma crocodyli MP145]
Length = 657
Score = 75.3 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 32/62 (51%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ + + + L+ + YY LD P +D YD + + L +++Q P++ ++D P
Sbjct: 3 QKVIDKYQELIAKIKQYNNEYYNLDQPSVSDAEYDALYKELLEIEKQNPKIINQDSPSQI 62
Query: 117 VG 118
+G
Sbjct: 63 IG 64
>gi|77409440|ref|ZP_00786135.1| DNA ligase, NAD-dependent [Streptococcus agalactiae COH1]
gi|77171952|gb|EAO75126.1| DNA ligase, NAD-dependent [Streptococcus agalactiae COH1]
Length = 643
Score = 75.3 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 75 KWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
K YY DNP +D YD++ L L+EQ PE + P + VG
Sbjct: 8 KEYYTQDNPTVSDSQYDQLYRELVELEEQHPENILPNSPTHRVG 51
>gi|217033559|ref|ZP_03438988.1| hypothetical protein HP9810_905g78 [Helicobacter pylori 98-10]
gi|216944084|gb|EEC23515.1| hypothetical protein HP9810_905g78 [Helicobacter pylori 98-10]
Length = 656
Score = 75.3 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S+ E + +EYL HH YY LD+P+ +D +YD + + L A +E+ P + P
Sbjct: 4 SQKEYLERIEYL-NTLSHH---YYNLDDPIVSDAVYDELYQELKAYEEKNPNGIQANSPT 59
Query: 115 NTVG 118
VG
Sbjct: 60 QKVG 63
>gi|253575959|ref|ZP_04853293.1| DNA ligase, NAD-dependent [Paenibacillus sp. oral taxon 786 str.
D14]
gi|251844753|gb|EES72767.1| DNA ligase, NAD-dependent [Paenibacillus sp. oral taxon 786 str.
D14]
Length = 672
Score = 75.3 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+AM +E LV+ + YY LD P+ +D YD++ + L AL+ + + D P V
Sbjct: 2 DAMQRMEQLVEQLNRYNYHYYTLDEPIISDKEYDQLYDELTALEAE-TGITLPDSPTGRV 60
Query: 118 G 118
G
Sbjct: 61 G 61
>gi|308071012|ref|YP_003872617.1| DNA ligase (polydeoxyribonucleotide synthase [NAD+]) [Paenibacillus
polymyxa E681]
gi|305860291|gb|ADM72079.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Paenibacillus
polymyxa E681]
Length = 680
Score = 75.3 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+E LV + YY LD P +D YD + + L AL++ L D P VG
Sbjct: 15 RMEQLVAELNTYNYHYYTLDEPKISDKEYDVLYDELVALEQT-SGLVLPDSPTQRVG 70
>gi|317968248|ref|ZP_07969638.1| NAD-dependent DNA ligase LigA [Synechococcus sp. CB0205]
Length = 239
Score = 75.3 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 22/59 (37%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L + YY LD P+ D +YDR+ L L+ L D P VG
Sbjct: 9 QARASELRDLLNRAAHAYYVLDAPVMEDPVYDRLYRELLDLENADASLISADSPTQRVG 67
>gi|317181928|dbj|BAJ59712.1| NAD-dependent DNA ligase LigA [Helicobacter pylori F57]
Length = 656
Score = 75.3 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S+ E + +EYL HH YY LD+P+ +D +YD + + L A +E+ P + P
Sbjct: 4 SQKEYLERIEYL-NTLSHH---YYNLDDPIVSDAVYDELYQELKAYEEKNPNSIQSNSPT 59
Query: 115 NTVG 118
VG
Sbjct: 60 QKVG 63
>gi|323359739|ref|YP_004226135.1| NAD-dependent DNA ligase [Microbacterium testaceum StLB037]
gi|323276110|dbj|BAJ76255.1| NAD-dependent DNA ligase [Microbacterium testaceum StLB037]
Length = 810
Score = 74.9 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 33/68 (48%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
+ LS +A E L + ++ YY D L D YD RL+AL+ + PEL +
Sbjct: 7 LPDLSLDDARAEAIDLTQRITDAREAYYGRDAELVDDATYDGWMHRLEALERRHPELQGQ 66
Query: 111 DHPWNTVG 118
D P +VG
Sbjct: 67 DSPTLSVG 74
>gi|134034096|sp|Q4UN15|DNLJ_RICFE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
Length = 689
Score = 74.9 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 70 ALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ YY DNPL +D YD++ L+++FP L E+ P +G
Sbjct: 23 IAAYNHAYYIEDNPLVSDSEYDQLFNTNLKLEQKFPHLVLENSPSKKIG 71
>gi|261838144|gb|ACX97910.1| DNA ligase [Helicobacter pylori 51]
Length = 656
Score = 74.9 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S+ E + +EYL HH YY LD+P+ +D LYD + + L A +E+ P + P
Sbjct: 4 SQKEYLERIEYL-NTLSHH---YYNLDDPIVSDALYDELYQELKAYEEKNPNGIQANSPT 59
Query: 115 NTVG 118
VG
Sbjct: 60 QKVG 63
>gi|109947386|ref|YP_664614.1| NAD-dependent DNA ligase LigA [Helicobacter acinonychis str.
Sheeba]
gi|123362647|sp|Q17XL1|DNLJ_HELAH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|109714607|emb|CAJ99615.1| DNA ligase [Helicobacter acinonychis str. Sheeba]
Length = 654
Score = 74.9 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S+ E + +EYL HH YY LD P+ +D +YD + + L A +E+ P + P
Sbjct: 4 SQKEYLERIEYL-NTLSHH---YYNLDEPIVSDAVYDELYQELKAYEEKNPSQIQANSPT 59
Query: 115 NTVG 118
VG
Sbjct: 60 QKVG 63
>gi|317179023|dbj|BAJ56811.1| NAD-dependent DNA ligase LigA [Helicobacter pylori F30]
Length = 657
Score = 74.9 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S+ E + +EYL HH YY LD+P+ +D +YD + + L A +E+ P + P
Sbjct: 4 SQKEYLERIEYL-NTLSHH---YYNLDDPIVSDAIYDELYQELKAYEEKNPNSIQANSPT 59
Query: 115 NTVG 118
VG
Sbjct: 60 QKVG 63
>gi|32267302|ref|NP_861334.1| NAD-dependent DNA ligase LigA [Helicobacter hepaticus ATCC 51449]
gi|81665265|sp|Q7VF74|DNLJ_HELHP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|32263355|gb|AAP78400.1| DNA ligase [Helicobacter hepaticus ATCC 51449]
Length = 650
Score = 74.9 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ E +V+ L K+A H YY LD P+ TD YD + ++ +E+ P L D P
Sbjct: 1 MTSQEYYTQVQILKKMAYH----YYVLDEPIATDEQYDSLYHQIVRFEEENPHLIDASSP 56
Query: 114 WNTVG 118
VG
Sbjct: 57 TQRVG 61
>gi|254442845|ref|ZP_05056321.1| DNA ligase, NAD-dependent [Verrucomicrobiae bacterium DG1235]
gi|198257153|gb|EDY81461.1| DNA ligase, NAD-dependent [Verrucomicrobiae bacterium DG1235]
Length = 718
Score = 74.5 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 50 KVTSLSKGE-AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
+ LS+ E + L H YYR P +D YD + L L+E +P+L
Sbjct: 41 DTSKLSEEERGRGRLVELRAEIARHDDLYYRKAAPEISDADYDALKRELHRLEELYPDL 99
>gi|317014035|gb|ADU81471.1| NAD-dependent DNA ligase LigA [Helicobacter pylori Gambia94/24]
Length = 656
Score = 74.5 bits (182), Expect = 5e-12, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S+ E + +EYL HH YY LD P+ +D +YD + + L A +E+ P + P
Sbjct: 4 SQKEYLERIEYL-NTLSHH---YYNLDEPIVSDAVYDELYQELKAYEEENPNRIQANSPT 59
Query: 115 NTVG 118
VG
Sbjct: 60 QKVG 63
>gi|217032016|ref|ZP_03437517.1| hypothetical protein HPB128_187g43 [Helicobacter pylori B128]
gi|216946326|gb|EEC24932.1| hypothetical protein HPB128_187g43 [Helicobacter pylori B128]
Length = 458
Score = 74.5 bits (182), Expect = 5e-12, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S+ E + + YL HH YY LD+P+ +D +YD + + L A +E+ P + P
Sbjct: 4 SQKEYLERIAYL-NTLSHH---YYNLDDPIVSDAVYDELYQELKAYEEKNPNSIQANSPT 59
Query: 115 NTVG 118
VG
Sbjct: 60 QKVG 63
>gi|160914436|ref|ZP_02076651.1| hypothetical protein EUBDOL_00440 [Eubacterium dolichum DSM 3991]
gi|158433594|gb|EDP11883.1| hypothetical protein EUBDOL_00440 [Eubacterium dolichum DSM 3991]
Length = 664
Score = 74.5 bits (182), Expect = 5e-12, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 28/60 (46%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ + L KI YY LD P +D YDR + L L+++FP+ D + VG
Sbjct: 2 SQQRILELRKILDRLAYEYYVLDKPSVSDQEYDRYYQELLKLEDEFPQYRDPNSITQRVG 61
>gi|297571016|ref|YP_003696790.1| DNA ligase, NAD-dependent [Arcanobacterium haemolyticum DSM 20595]
gi|296931363|gb|ADH92171.1| DNA ligase, NAD-dependent [Arcanobacterium haemolyticum DSM 20595]
Length = 843
Score = 74.5 bits (182), Expect = 5e-12, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 32/64 (50%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
+ +A + + L L Q+ YY + + D YD + L AL+E+FP+L+ D P
Sbjct: 8 NFDDAQVRWQELAPQLLDAQETYYSTGDQVMVDATYDALMRELRALEEEFPQLWSPDSPS 67
Query: 115 NTVG 118
VG
Sbjct: 68 TKVG 71
>gi|293401241|ref|ZP_06645385.1| DNA ligase, NAD-dependent [Erysipelotrichaceae bacterium 5_2_54FAA]
gi|291305367|gb|EFE46612.1| DNA ligase, NAD-dependent [Erysipelotrichaceae bacterium 5_2_54FAA]
Length = 662
Score = 74.1 bits (181), Expect = 5e-12, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 26/61 (42%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+ + L K + YY LD P D YD+ + L L++ +P+ D + V
Sbjct: 2 DVQQRILALRKQLDTYAYEYYVLDQPSVPDAEYDQAYQELLKLEDTYPQYRDPNSITQRV 61
Query: 118 G 118
G
Sbjct: 62 G 62
>gi|15611625|ref|NP_223276.1| NAD-dependent DNA ligase LigA [Helicobacter pylori J99]
gi|7674020|sp|Q9ZLM1|DNLJ_HELPJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|4155109|gb|AAD06141.1| DNA LIGASE [Helicobacter pylori J99]
Length = 656
Score = 74.1 bits (181), Expect = 5e-12, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S+ E + +EYL HH YY LD P+ +D +YD + + L A +E+ P + P
Sbjct: 4 SQKEYLERIEYL-NTLSHH---YYNLDEPIVSDAVYDELYQELKAYEEENPNRIQANSPT 59
Query: 115 NTVG 118
VG
Sbjct: 60 QKVG 63
>gi|254495534|ref|ZP_05108458.1| DNA ligase, NAD-dependent [Polaribacter sp. MED152]
gi|85819890|gb|EAQ41047.1| DNA ligase, NAD-dependent [Polaribacter sp. MED152]
Length = 665
Score = 74.1 bits (181), Expect = 5e-12, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 26/60 (43%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L H YY LDN +D +D + LD L+++ P FD + P VG
Sbjct: 3 VQERIIELRNELNRHNYNYYVLDNATISDFEFDIKLKELDKLEQENPLFFDANSPTQRVG 62
>gi|152990877|ref|YP_001356599.1| NAD-dependent DNA ligase LigA [Nitratiruptor sp. SB155-2]
gi|166216219|sp|A6Q433|DNLJ_NITSB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|151422738|dbj|BAF70242.1| DNA ligase, NAD-dependent [Nitratiruptor sp. SB155-2]
Length = 660
Score = 74.1 bits (181), Expect = 5e-12, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 26/57 (45%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E + V+ YY LDNP D +YD++ ++ ++ P+ D P +G
Sbjct: 7 EYKEAVEKLKRWAYAYYVLDNPEVPDEVYDKLYREVEEYEKAHPDQIDPTSPTQRIG 63
>gi|71892277|ref|YP_278011.1| DNA ligase [Candidatus Blochmannia pennsylvanicus str. BPEN]
gi|123747814|sp|Q492G5|DNLJ_BLOPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|71796383|gb|AAZ41134.1| DNA ligase [Candidatus Blochmannia pennsylvanicus str. BPEN]
Length = 595
Score = 74.1 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 29/60 (48%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L K H + YY + +D YD + E+L+ L++ +P L E P +G
Sbjct: 4 VKQKIQKLRKKLRHWEYLYYTKNESAVSDEKYDAMLEKLNQLEQIYPHLIAESSPTQRIG 63
>gi|207092489|ref|ZP_03240276.1| NAD-dependent DNA ligase LigA [Helicobacter pylori HPKX_438_AG0C1]
Length = 656
Score = 74.1 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S+ E + + YL HH YY LD+P+ +D +YD + + L A +E+ P + P
Sbjct: 4 SQKEYLERIAYL-NTLSHH---YYNLDDPIVSDAVYDELYQELKAYEEKNPNSIQANSPT 59
Query: 115 NTVG 118
VG
Sbjct: 60 QKVG 63
>gi|58038653|ref|YP_190617.1| NAD-dependent DNA ligase [Gluconobacter oxydans 621H]
gi|81352629|sp|Q5FUI5|DNLJ_GLUOX RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|58001067|gb|AAW59961.1| NAD-dependent DNA ligase [Gluconobacter oxydans 621H]
Length = 683
Score = 74.1 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 25/60 (41%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
A L + Y+ D P +D +YD L AL+E +P+L ++ VG
Sbjct: 8 AAERHAALEADLAQWDEAYHGRDEPEVSDAVYDAARRELLALEEAYPDLRSQEGASQRVG 67
>gi|311744048|ref|ZP_07717854.1| NAD-dependent DNA ligase LigA [Aeromicrobium marinum DSM 15272]
gi|311313178|gb|EFQ83089.1| NAD-dependent DNA ligase LigA [Aeromicrobium marinum DSM 15272]
Length = 782
Score = 73.7 bits (180), Expect = 7e-12, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
V L EA EV L++ ++ YY D L D YD +L+A++ + PEL
Sbjct: 9 PVPDLD--EARAEVTTLLERIAEAREAYYGQDASLVDDATYDGWLRQLEAVERRHPELQG 66
Query: 110 EDHPWNTVG 118
+D P VG
Sbjct: 67 QDSPTLNVG 75
>gi|298736308|ref|YP_003728834.1| NAD-dependent DNA ligase LigA [Helicobacter pylori B8]
gi|298355498|emb|CBI66370.1| NAD-dependent DNA ligase LigA [Helicobacter pylori B8]
Length = 656
Score = 73.7 bits (180), Expect = 7e-12, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S+ E + + YL HH YY LD+P+ +D +YD + + L A +E+ P + P
Sbjct: 4 SQKEYLERIAYL-NTLSHH---YYNLDDPIVSDAVYDELYQELKAYEEKNPNSIQANSPT 59
Query: 115 NTVG 118
VG
Sbjct: 60 QKVG 63
>gi|227542668|ref|ZP_03972717.1| NAD-dependent DNA ligase LigA [Corynebacterium glucuronolyticum
ATCC 51866]
gi|227181551|gb|EEI62523.1| NAD-dependent DNA ligase LigA [Corynebacterium glucuronolyticum
ATCC 51866]
Length = 679
Score = 73.7 bits (180), Expect = 7e-12, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E L +H+ YY P TD +D + +L L+ + P L D P VG
Sbjct: 7 ARWEELAAQVRYHRDKYY-NGTPEITDAEFDVLFSQLQQLEAEHPGLRAPDSPTLEVG 63
>gi|319441119|ref|ZP_07990275.1| NAD-dependent DNA ligase LigA [Corynebacterium variabile DSM 44702]
Length = 702
Score = 73.7 bits (180), Expect = 7e-12, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Query: 39 RALESWLDKAKKVTSLS--KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSER 96
R + + + K+ TS + + L HH+ YY + P+ TD +D +
Sbjct: 6 RTTLNRVSEPKQTTSPTASPDDPAERWSALAAEIRHHRDLYYYRE-PVITDAEFDTMMRE 64
Query: 97 LDALQEQFPELFDEDHPWNTV 117
L +L+ + PE+ P V
Sbjct: 65 LQSLEAEHPEVVTGPSPTTEV 85
>gi|227488027|ref|ZP_03918343.1| NAD-dependent DNA ligase LigA [Corynebacterium glucuronolyticum
ATCC 51867]
gi|227091889|gb|EEI27201.1| NAD-dependent DNA ligase LigA [Corynebacterium glucuronolyticum
ATCC 51867]
Length = 679
Score = 73.7 bits (180), Expect = 7e-12, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E L +H+ YY P TD +D + +L L+ + P L D P VG
Sbjct: 7 ARWEELAAQVRYHRDKYY-NGTPEITDAEFDVLFSQLQQLEAEHPGLRAPDSPTLEVG 63
>gi|108563021|ref|YP_627337.1| NAD-dependent DNA ligase LigA [Helicobacter pylori HPAG1]
gi|123246990|sp|Q1CTQ9|DNLJ_HELPH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|107836794|gb|ABF84663.1| DNA ligase [Helicobacter pylori HPAG1]
Length = 656
Score = 73.7 bits (180), Expect = 8e-12, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S+ E + + YL HH YY LD+P+ +D +YD + + L A +E+ P + P
Sbjct: 4 SQKEYLERIAYL-NTLSHH---YYNLDDPIVSDAVYDELYQELKAYEEKNPSHIQANSPT 59
Query: 115 NTVG 118
VG
Sbjct: 60 QKVG 63
>gi|297243530|ref|ZP_06927462.1| NAD-dependent DNA ligase, BRCT type II [Gardnerella vaginalis AMD]
gi|296888575|gb|EFH27315.1| NAD-dependent DNA ligase, BRCT type II [Gardnerella vaginalis AMD]
Length = 922
Score = 73.7 bits (180), Expect = 8e-12, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 40/104 (38%), Gaps = 2/104 (1%)
Query: 15 NEHNITPAQWKKLLTLEAKFLPNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQ 74
+E N T +K T A+ P + + +L+ +A L A Q
Sbjct: 20 DEQNETHENTQKTDTWIAQLQPTDTDALALGNLQP--ATLTIEQAAKLWAKLAAWAQSDQ 77
Query: 75 KWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YY D+P +D YD L AL+ FP L P + VG
Sbjct: 78 IAYYVEDSPTSSDAAYDARMRALSALEAAFPTLDTPQSPTHRVG 121
>gi|229817979|ref|ZP_04448261.1| hypothetical protein BIFANG_03266 [Bifidobacterium angulatum DSM
20098]
gi|229784583|gb|EEP20697.1| hypothetical protein BIFANG_03266 [Bifidobacterium angulatum DSM
20098]
Length = 927
Score = 73.7 bits (180), Expect = 8e-12, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 25/69 (36%)
Query: 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
V+ + A L Q YY D P+ +D YD L L+ FP L +
Sbjct: 71 DVSGMEADTAARLWAKLAAWVESDQIAYYIDDAPVSSDAAYDARLRCLQRLEAAFPTLDN 130
Query: 110 EDHPWNTVG 118
P VG
Sbjct: 131 PQSPTRRVG 139
>gi|88855225|ref|ZP_01129890.1| DNA ligase [marine actinobacterium PHSC20C1]
gi|88815753|gb|EAR25610.1| DNA ligase [marine actinobacterium PHSC20C1]
Length = 775
Score = 73.7 bits (180), Expect = 9e-12, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 29/62 (46%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
A EV L L + YY D L D YD + +RL+ L+ + PEL +D P
Sbjct: 27 AAARDEVGTLSTRILELRDAYYERDEVLVDDAEYDELIQRLERLEREHPELQSQDSPTLR 86
Query: 117 VG 118
VG
Sbjct: 87 VG 88
>gi|85702769|ref|ZP_01033873.1| DNA ligase, NAD-dependent [Roseovarius sp. 217]
gi|85671697|gb|EAQ26554.1| DNA ligase, NAD-dependent [Roseovarius sp. 217]
Length = 866
Score = 73.3 bits (179), Expect = 9e-12, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 32/74 (43%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
+ V L++ EA E+ L + + Y+ D P TD YD + R A++ +
Sbjct: 1 MTDRIAVEDLTEDEARTELARLAALLAEANRAYHTEDAPEITDAAYDALKARNAAIEARL 60
Query: 105 PELFDEDHPWNTVG 118
P L D + VG
Sbjct: 61 PALKRADSASDQVG 74
>gi|189485424|ref|YP_001956365.1| DNA ligase (NAD+) [uncultured Termite group 1 bacterium phylotype
Rs-D17]
gi|254781446|sp|B1H072|DNLJ_UNCTG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|170287383|dbj|BAG13904.1| DNA ligase (NAD+) [uncultured Termite group 1 bacterium phylotype
Rs-D17]
Length = 674
Score = 73.3 bits (179), Expect = 9e-12, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 31/64 (48%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ G ++YL K + H YY +NP +D YD +++ L+ ++++ P D P
Sbjct: 1 MIMGNIQNRIDYLRKELIRHNGLYYESNNPEISDSEYDNLAKELEQIEKENPLFALPDSP 60
Query: 114 WNTV 117
+
Sbjct: 61 TKKI 64
>gi|329924834|ref|ZP_08279795.1| DNA ligase (NAD+) [Paenibacillus sp. HGF5]
gi|328940396|gb|EGG36721.1| DNA ligase (NAD+) [Paenibacillus sp. HGF5]
Length = 670
Score = 73.3 bits (179), Expect = 9e-12, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++E L+ ++ YY LD PL +D YD + ++L AL+ + + D P VG
Sbjct: 4 KEKMEKLIAELNNYNYHYYTLDQPLVSDKEYDALYDQLVALEAE-TGVTLPDSPTQRVG 61
>gi|261409569|ref|YP_003245810.1| NAD-dependent DNA ligase LigA [Paenibacillus sp. Y412MC10]
gi|261286032|gb|ACX68003.1| DNA ligase, NAD-dependent [Paenibacillus sp. Y412MC10]
Length = 670
Score = 73.3 bits (179), Expect = 9e-12, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++E L+ ++ YY LD PL +D YD + ++L AL+ + + D P VG
Sbjct: 4 KEKMEKLIAELNNYNYHYYTLDQPLVSDKEYDALYDQLVALEAE-TGVTLPDSPTQRVG 61
>gi|237753058|ref|ZP_04583538.1| NAD-dependent DNA ligase LigA [Helicobacter winghamensis ATCC
BAA-430]
gi|229375325|gb|EEO25416.1| NAD-dependent DNA ligase LigA [Helicobacter winghamensis ATCC
BAA-430]
Length = 666
Score = 73.3 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 67 VKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+K K YY LD+P+ +D YD + ++ A + Q P+ +D P VG
Sbjct: 10 IKTLNLWAKHYYVLDDPIASDEEYDLLYHKVLAYEAQNPQFIAQDSPTQRVG 61
>gi|313681943|ref|YP_004059681.1| DNA ligase, nad-dependent [Sulfuricurvum kujiense DSM 16994]
gi|313154803|gb|ADR33481.1| DNA ligase, NAD-dependent [Sulfuricurvum kujiense DSM 16994]
Length = 676
Score = 73.3 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+++ + VE L K + YY LD+P+ TD YD + ++ A + + P D P
Sbjct: 1 MTQTDYKNAVEQLKK----YSYHYYVLDDPITTDEEYDILYHKVVAYEHEHPSEIISDSP 56
Query: 114 WNTVG 118
VG
Sbjct: 57 TQRVG 61
>gi|15835041|ref|NP_296800.1| NAD-dependent DNA ligase LigA [Chlamydia muridarum Nigg]
gi|270285206|ref|ZP_06194600.1| NAD-dependent DNA ligase LigA [Chlamydia muridarum Nigg]
gi|270289225|ref|ZP_06195527.1| NAD-dependent DNA ligase LigA [Chlamydia muridarum Weiss]
gi|301336602|ref|ZP_07224804.1| NAD-dependent DNA ligase LigA [Chlamydia muridarum MopnTet14]
gi|13626415|sp|Q9PKP2|DNLJ_CHLMU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|7190466|gb|AAF39279.1| DNA ligase [Chlamydia muridarum Nigg]
Length = 660
Score = 73.3 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 20/49 (40%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
L + H + YY LD P +D YD L ++ Q PE P
Sbjct: 12 LCTELIEHDRRYYVLDRPTISDYSYDMKMRELQKIEAQHPEWKVPWSPT 60
>gi|255533202|ref|YP_003093574.1| DNA ligase, NAD-dependent [Pedobacter heparinus DSM 2366]
gi|255346186|gb|ACU05512.1| DNA ligase, NAD-dependent [Pedobacter heparinus DSM 2366]
Length = 670
Score = 73.3 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 29/65 (44%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+S E ++ LVK H YY L P D +D+ E L L+ +PE D + P
Sbjct: 1 MSGSEVKTNMDALVKELNQHSYNYYVLAMPTIADYTFDKKLEELAQLELAYPEFADPNSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TRKVG 65
>gi|291456400|ref|ZP_06595790.1| DNA ligase, NAD-dependent [Bifidobacterium breve DSM 20213]
gi|291381677|gb|EFE89195.1| DNA ligase, NAD-dependent [Bifidobacterium breve DSM 20213]
Length = 930
Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 27/69 (39%)
Query: 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
V +L+ A + Q YY D P+ +D YD L L+ FP L +
Sbjct: 53 DVNTLNAEVAARLWARVAAWVEADQIAYYIDDAPVSSDAAYDARLRCLQKLEAAFPSLDN 112
Query: 110 EDHPWNTVG 118
P + VG
Sbjct: 113 PQSPTHRVG 121
>gi|313678467|ref|YP_004056207.1| DNA ligase (NAD+) [Mycoplasma bovis PG45]
gi|312950136|gb|ADR24731.1| DNA ligase (NAD+) [Mycoplasma bovis PG45]
Length = 654
Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ A ++ LV YY+L+ P +D YD+ L+ L++++PE +D P
Sbjct: 1 MESKNAKELIKSLVDKINQWNYEYYQLNKPSVSDLEYDKALWELEKLEKEYPEFVLDDSP 60
Query: 114 WNTVG 118
+G
Sbjct: 61 TFKLG 65
>gi|309800538|ref|ZP_07694688.1| DNA ligase [Streptococcus infantis SK1302]
gi|308115831|gb|EFO53357.1| DNA ligase [Streptococcus infantis SK1302]
Length = 315
Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 29/58 (50%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ LV++ + YY DNP +D YDR+ L L++ P+ + P + VG
Sbjct: 3 ERMKELVELLNRYATEYYTSDNPSVSDSEYDRLYRELVELEKARPDQVLPESPTHRVG 60
>gi|317009372|gb|ADU79952.1| NAD-dependent DNA ligase LigA [Helicobacter pylori India7]
Length = 656
Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S+ E + + YL HH YY LD+P+ +D +YD + + L A +E+ P + P
Sbjct: 4 SQKEYLERIGYL-NTLSHH---YYNLDDPIVSDAVYDELYQELKAYEEKNPSHIQANSPT 59
Query: 115 NTVG 118
VG
Sbjct: 60 QKVG 63
>gi|116511279|ref|YP_808495.1| NAD-dependent DNA ligase LigA [Lactococcus lactis subsp. cremoris
SK11]
gi|122940331|sp|Q031P9|DNLJ_LACLS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|116106933|gb|ABJ72073.1| NAD-dependent DNA ligase [Lactococcus lactis subsp. cremoris SK11]
Length = 686
Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 25/60 (41%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ YY LD P D YDR+ L L+++ P+L D P + G
Sbjct: 3 IESKIKEFTDQLNQFAYEYYTLDEPSVEDSEYDRLYHELVKLEQENPQLVRADSPTHWTG 62
>gi|88658391|ref|YP_507122.1| DNA ligase, NAD-dependent [Ehrlichia chaffeensis str. Arkansas]
gi|123763773|sp|Q2GHG1|DNLJ_EHRCR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|88599848|gb|ABD45317.1| DNA ligase, NAD-dependent [Ehrlichia chaffeensis str. Arkansas]
Length = 676
Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 32/64 (50%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
+ +A +E++ L K HH YY DNP +D YD + + + + FP+L +
Sbjct: 3 DQEKAKLELDKLNKQIQHHDVLYYVQDNPEISDAEYDELCRKRNLILNAFPKLTQSNDYQ 62
Query: 115 NTVG 118
N +G
Sbjct: 63 NNIG 66
>gi|152992057|ref|YP_001357778.1| NAD-dependent DNA ligase LigA [Sulfurovum sp. NBC37-1]
gi|166216278|sp|A6Q7G2|DNLJ_SULNB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|151423918|dbj|BAF71421.1| DNA ligase, NAD-dependent [Sulfurovum sp. NBC37-1]
Length = 648
Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ E +V+ L K YY DNP+ TD YDR+ + + + P+ ED P
Sbjct: 1 MTYDEYKEKVKTLKK----WAYAYYVEDNPVATDEEYDRLYHEVLDYEMKHPDKALEDSP 56
Query: 114 WNTVG 118
VG
Sbjct: 57 TKRVG 61
>gi|308063596|gb|ADO05483.1| NAD-dependent DNA ligase LigA [Helicobacter pylori Sat464]
Length = 656
Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S+ E + +EYL HH YY LD+P+ +D +YD + + L +E+ P + P
Sbjct: 4 SQKEYLERIEYL-NTLSHH---YYNLDDPIVSDAVYDELYQELKVYEEKNPNNIQANSPT 59
Query: 115 NTVG 118
VG
Sbjct: 60 QKVG 63
>gi|313898151|ref|ZP_07831690.1| DNA ligase (NAD+) [Clostridium sp. HGF2]
gi|312957179|gb|EFR38808.1| DNA ligase (NAD+) [Clostridium sp. HGF2]
Length = 665
Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 28/60 (46%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ + L I YY LD P +D YDR + L AL+++FP+ D + VG
Sbjct: 2 SQQRILELRSILDRLAYEYYVLDQPSKSDQEYDRYYQELVALEDEFPQYRDPNSITQRVG 61
>gi|283783245|ref|YP_003373999.1| DNA ligase (NAD(+)) [Gardnerella vaginalis 409-05]
gi|283441754|gb|ADB14220.1| DNA ligase (NAD(+)) [Gardnerella vaginalis 409-05]
Length = 962
Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 44/112 (39%), Gaps = 6/112 (5%)
Query: 11 SKFENEHNITPA-QWKKLLTLE---AKFLPNKRALESWLDKAKKVTSLSKGEAMIEVEYL 66
SK +N+ ++ A +W + E A P + + +L+ +A L
Sbjct: 52 SKTDNKTDMHEANEWNSTIDTEKWIANLKPTDTDALALGNLQP--ATLTIEQAAKLWAKL 109
Query: 67 VKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
A Q YY D+P +D YD L AL+ FP L P + VG
Sbjct: 110 AAWAQSDQIAYYVEDSPTSSDAAYDARMRALSALEAAFPTLDTPQSPTHRVG 161
>gi|254390812|ref|ZP_05006024.1| DNA ligase [Streptomyces clavuligerus ATCC 27064]
gi|197704511|gb|EDY50323.1| DNA ligase [Streptomyces clavuligerus ATCC 27064]
Length = 730
Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 27/62 (43%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
A L + H+ YY D P+ +D +DR+ L+ L+E+ P L D P
Sbjct: 10 PARARERHAELAEQIEEHRFRYYVKDQPVISDSEFDRLLRSLEELEERHPALCTPDSPTQ 69
Query: 116 TV 117
V
Sbjct: 70 KV 71
>gi|293363574|ref|ZP_06610330.1| DNA ligase (NAD(+)) [Mycoplasma alligatoris A21JP2]
gi|292552923|gb|EFF41677.1| DNA ligase (NAD(+)) [Mycoplasma alligatoris A21JP2]
Length = 660
Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 30/63 (47%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
K E + + L++ YY LD P TD +YD+ + L ++ +PE E+ P
Sbjct: 2 KPEILERYKRLIENLNKWNNEYYNLDTPSVTDEVYDQEYQELLEIESMYPEAILENSPSQ 61
Query: 116 TVG 118
+G
Sbjct: 62 IIG 64
>gi|15894478|ref|NP_347827.1| NAD-dependent DNA ligase LigA [Clostridium acetobutylicum ATCC 824]
gi|81530636|sp|Q97JS8|DNLJ1_CLOAB RecName: Full=DNA ligase 1; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] 1
gi|15024117|gb|AAK79167.1|AE007633_11 DNA ligase (NAD dependent), LigA [Clostridium acetobutylicum ATCC
824]
gi|325508609|gb|ADZ20245.1| NAD-dependent DNA ligase LigA [Clostridium acetobutylicum EA 2018]
Length = 663
Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+E L++ + YY LDNP+ D YD + + L L+E+ E + + P VG
Sbjct: 4 IEDLIEKLNKYSYSYYVLDNPIVADKEYDIMYDELKRLEEE-TEYINPNSPTQRVG 58
>gi|298252820|ref|ZP_06976614.1| NAD-dependent DNA ligase, BRCT type II [Gardnerella vaginalis 5-1]
gi|297533184|gb|EFH72068.1| NAD-dependent DNA ligase, BRCT type II [Gardnerella vaginalis 5-1]
Length = 962
Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 44/112 (39%), Gaps = 6/112 (5%)
Query: 11 SKFENEHNITPA-QWKKLLTLE---AKFLPNKRALESWLDKAKKVTSLSKGEAMIEVEYL 66
SK +N+ ++ A +W + E A P + + +L+ +A L
Sbjct: 52 SKTDNKTDMYEANEWNSTIDTEKWIANLKPTDTDALTLGNLQP--ATLTIEQAAKLWAKL 109
Query: 67 VKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
A Q YY D+P +D YD L AL+ FP L P + VG
Sbjct: 110 AAWAQSDQIAYYVEDSPTSSDAAYDARMRALSALEAAFPTLDTPQSPTHRVG 161
>gi|294815250|ref|ZP_06773893.1| DNA ligase [Streptomyces clavuligerus ATCC 27064]
gi|326443605|ref|ZP_08218339.1| NAD-dependent DNA ligase LigA [Streptomyces clavuligerus ATCC
27064]
gi|294327849|gb|EFG09492.1| DNA ligase [Streptomyces clavuligerus ATCC 27064]
Length = 767
Score = 72.2 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 27/62 (43%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
A L + H+ YY D P+ +D +DR+ L+ L+E+ P L D P
Sbjct: 47 PARARERHAELAEQIEEHRFRYYVKDQPVISDSEFDRLLRSLEELEERHPALCTPDSPTQ 106
Query: 116 TV 117
V
Sbjct: 107 KV 108
>gi|254476645|ref|ZP_05090031.1| DNA ligase, NAD-dependent [Ruegeria sp. R11]
gi|214030888|gb|EEB71723.1| DNA ligase, NAD-dependent [Ruegeria sp. R11]
Length = 783
Score = 72.2 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 34/91 (37%), Gaps = 8/91 (8%)
Query: 36 PNKRALESWLDKAKKVTS--------LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTD 87
P+ L +A VT L+ EA E L Y++ D P +D
Sbjct: 17 PSPYHLSKDKKEATDVTQPGDMDPQSLTLEEARPLFEQLQDELRAADLAYHQKDAPEISD 76
Query: 88 GLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
YD + AL E FP L E +TVG
Sbjct: 77 ADYDAKKRQYRALAEAFPNLAAEATELDTVG 107
>gi|228904740|ref|ZP_04068794.1| DNA ligase [Bacillus thuringiensis IBL 4222]
gi|228854754|gb|EEM99358.1| DNA ligase [Bacillus thuringiensis IBL 4222]
Length = 656
Score = 72.2 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 25/53 (47%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV YY +D P+ +D YDR+ + L ++E PE P N VG
Sbjct: 11 LVGELTMLNHHYYTMDKPIASDAEYDRLYDELVKIEELHPEWTVAHSPSNRVG 63
>gi|308235729|ref|ZP_07666466.1| DNA ligase (NAD(+)) [Gardnerella vaginalis ATCC 14018]
gi|311114720|ref|YP_003985941.1| NAD-dependent DNA ligase LigA [Gardnerella vaginalis ATCC 14019]
gi|310946214|gb|ADP38918.1| NAD-dependent DNA ligase LigA [Gardnerella vaginalis ATCC 14019]
Length = 960
Score = 71.8 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 27/65 (41%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
L+ +A L A Q YY D+P +D YD L +L+ FP L P
Sbjct: 99 LTSEQAARLWAKLAAWAQSDQIAYYVDDSPSSSDAAYDTRMRVLSSLESTFPILDTPQSP 158
Query: 114 WNTVG 118
+ VG
Sbjct: 159 THRVG 163
>gi|310830411|ref|YP_003965512.1| DNA ligase, NAD-dependent [Paenibacillus polymyxa SC2]
gi|309249878|gb|ADO59444.1| DNA ligase, NAD-dependent [Paenibacillus polymyxa SC2]
Length = 662
Score = 71.8 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDN--PLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
A ++ L H + Y D P+ +D Y+ + L L++Q+PE D P +
Sbjct: 7 AQQRIKQLTSEIRKHDELY---DQFKPVISDQEYNNLYYELLDLEKQYPEFVIPDSPTHK 63
Query: 117 V 117
+
Sbjct: 64 I 64
>gi|15645240|ref|NP_207410.1| NAD-dependent DNA ligase LigA [Helicobacter pylori 26695]
gi|3182983|sp|O25336|DNLJ_HELPY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|2313737|gb|AAD07680.1| DNA ligase (lig) [Helicobacter pylori 26695]
Length = 656
Score = 71.8 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S+ E + + YL HH YY LD P+ +D +YD + + L A +E+ P + P
Sbjct: 4 SQKEYLERIAYL-NTLSHH---YYNLDEPIVSDAIYDELYQELKAYEEKNPNGIQANSPT 59
Query: 115 NTVG 118
VG
Sbjct: 60 QKVG 63
>gi|51598803|ref|YP_072991.1| NAD-dependent DNA ligase LigA [Borrelia garinii PBi]
gi|81609923|sp|Q660X2|DNLJ_BORGA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|51573374|gb|AAU07399.1| DNA ligase [Borrelia garinii PBi]
Length = 660
Score = 71.8 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 25/61 (40%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+ E+E L K+ K YY P D +YD RL L+ + PE D P
Sbjct: 4 KIQQEIEDLKKLIRKWDKEYYVDSLPSVEDFVYDNHILRLKELESRHPEYKTLDSPTLKF 63
Query: 118 G 118
G
Sbjct: 64 G 64
>gi|39938924|ref|NP_950690.1| NAD-dependent DNA ligase [Onion yellows phytoplasma OY-M]
gi|81402396|sp|Q6YQD6|DNLJ_ONYPE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|39722033|dbj|BAD04523.1| NAD-dependent DNA ligase [Onion yellows phytoplasma OY-M]
Length = 671
Score = 71.8 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 27/60 (45%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ LVK YY L NP +D YD + + L L+ ++P+ P +G
Sbjct: 7 IKQKIKSLVKQLTKANYQYYNLSNPDLSDQQYDALLKELINLETRYPQFKLPYSPTLKIG 66
>gi|68536402|ref|YP_251107.1| NAD-dependent DNA ligase LigA [Corynebacterium jeikeium K411]
gi|123748223|sp|Q4JUL8|DNLJ_CORJK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|68264001|emb|CAI37489.1| DNA ligase [Corynebacterium jeikeium K411]
Length = 695
Score = 71.8 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+ L HH++ YY + P +D +D + + L L++ PE+ P V
Sbjct: 4 QSRWQELADQVRHHRQLYYYGE-PEISDADFDALLQELKDLEQAHPEVVTGASPTEEV 60
>gi|149195296|ref|ZP_01872384.1| NAD-dependent DNA ligase LigA [Caminibacter mediatlanticus TB-2]
gi|149134560|gb|EDM23048.1| NAD-dependent DNA ligase LigA [Caminibacter mediatlanticus TB-2]
Length = 682
Score = 71.8 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 30/58 (51%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E + V+ +YY LDNPL TD YD++ + ++ ++ P+ D+ P +G
Sbjct: 6 EEYKKAVETLKKWAYYYYVLDNPLVTDEEYDKLYKEVEEYEKNHPDEVDKTSPTQRIG 63
>gi|260577534|ref|ZP_05845474.1| DNA ligase [Corynebacterium jeikeium ATCC 43734]
gi|258604338|gb|EEW17575.1| DNA ligase [Corynebacterium jeikeium ATCC 43734]
Length = 688
Score = 71.8 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+ L HH++ YY + P +D +D + + L L++ PE+ P V
Sbjct: 4 QSRWQELADQVRHHRQLYYYGE-PEISDADFDALLQELKDLEQAHPEVVTGASPTEEV 60
>gi|187918415|ref|YP_001883978.1| NAD-dependent DNA ligase LigA [Borrelia hermsii DAH]
gi|254781263|sp|B2S0Q2|DNLJ_BORHD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|119861263|gb|AAX17058.1| NAD-dependent DNA ligase [Borrelia hermsii DAH]
Length = 669
Score = 71.4 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 25/62 (40%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ E+ L I + YY +P D YD+ RL L+ ++PE D P
Sbjct: 3 EDVEDEILRLKNIIKRWNREYYVDSSPSVGDLTYDKALLRLQDLESKYPEYKTLDSPTFR 62
Query: 117 VG 118
G
Sbjct: 63 FG 64
>gi|183219642|ref|YP_001837638.1| DNA ligase [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Paris)']
gi|189909780|ref|YP_001961335.1| DNA ligase [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Ames)']
gi|190359263|sp|B0SA75|DNLJ_LEPBA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254781356|sp|B0SKC1|DNLJ_LEPBP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|167774456|gb|ABZ92757.1| DNA ligase (NAD+) (contains BRCT domain type II) [Leptospira
biflexa serovar Patoc strain 'Patoc 1 (Ames)']
gi|167778064|gb|ABZ96362.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Leptospira
biflexa serovar Patoc strain 'Patoc 1 (Paris)']
Length = 671
Score = 71.4 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 51 VTSLSKGE-AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
+ +K E + L K H YY+ + P+ TD +D + + L L+ + P+L D
Sbjct: 1 MAKKTKAEDPKKRIITLRKEIGRHNDLYYKENAPVITDKEFDILVKELQKLESENPDLAD 60
Query: 110 EDHPWNTVG 118
P VG
Sbjct: 61 VSSPTAQVG 69
>gi|308189932|ref|YP_003922863.1| DNA ligase (NAD(+)) [Mycoplasma fermentans JER]
gi|238809881|dbj|BAH69671.1| hypothetical protein [Mycoplasma fermentans PG18]
gi|307624674|gb|ADN68979.1| DNA ligase (NAD(+)) [Mycoplasma fermentans JER]
Length = 664
Score = 71.4 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 14/66 (21%), Positives = 33/66 (50%)
Query: 53 SLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDH 112
+++ + ++ L K YY+ +NP +D YD+ + L+ L++++P+ +
Sbjct: 4 AMNALDIKKKIIELSNKLNQWNKEYYQDNNPSVSDFEYDKALQELEQLEKKYPQFIYVNS 63
Query: 113 PWNTVG 118
P +G
Sbjct: 64 PTQKLG 69
>gi|307700359|ref|ZP_07637399.1| DNA ligase (NAD+) [Mobiluncus mulieris FB024-16]
gi|307614570|gb|EFN93799.1| DNA ligase (NAD+) [Mobiluncus mulieris FB024-16]
Length = 917
Score = 71.4 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 8/68 (11%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNP------LFTDGLYDRVSERLDALQEQFPELFD 109
+ E + LV + YY DNP +D YD + RL L+ +P L
Sbjct: 8 PPQIQNEHQELVAQIEAARADYY--DNPDEHGVTRLSDADYDALFVRLQLLEGSYPALVT 65
Query: 110 EDHPWNTV 117
D P TV
Sbjct: 66 PDSPTQTV 73
>gi|306818992|ref|ZP_07452709.1| NAD-dependent DNA ligase LigA [Mobiluncus mulieris ATCC 35239]
gi|304648185|gb|EFM45493.1| NAD-dependent DNA ligase LigA [Mobiluncus mulieris ATCC 35239]
Length = 917
Score = 71.4 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 8/68 (11%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNP------LFTDGLYDRVSERLDALQEQFPELFD 109
+ E + LV + YY DNP +D YD + RL L+ +P L
Sbjct: 8 PPQIQNEHQELVAQIEAARADYY--DNPDEHGVTRLSDADYDALFVRLQLLEGSYPALVT 65
Query: 110 EDHPWNTV 117
D P TV
Sbjct: 66 PDSPTQTV 73
>gi|227875717|ref|ZP_03993845.1| DNA ligase (NAD(+)) [Mobiluncus mulieris ATCC 35243]
gi|269976734|ref|ZP_06183710.1| DNA ligase, NAD-dependent [Mobiluncus mulieris 28-1]
gi|227843659|gb|EEJ53840.1| DNA ligase (NAD(+)) [Mobiluncus mulieris ATCC 35243]
gi|269935099|gb|EEZ91657.1| DNA ligase, NAD-dependent [Mobiluncus mulieris 28-1]
Length = 917
Score = 71.4 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 8/68 (11%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNP------LFTDGLYDRVSERLDALQEQFPELFD 109
+ E + LV + YY DNP +D YD + RL L+ +P L
Sbjct: 8 PPQIQNEHQELVAQIEAARADYY--DNPDEHGVTRLSDADYDALFVRLQLLEGSYPALVT 65
Query: 110 EDHPWNTV 117
D P TV
Sbjct: 66 PDSPTQTV 73
>gi|317012429|gb|ADU83037.1| NAD-dependent DNA ligase LigA [Helicobacter pylori Lithuania75]
Length = 656
Score = 71.4 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S+ E + + YL HH YY LD P+ +D +YD + + L A +E+ P + P
Sbjct: 4 SQKEYLERIAYL-NTLSHH---YYNLDEPIVSDAIYDELYQELKAYEEKNPNDIQANSPT 59
Query: 115 NTVG 118
VG
Sbjct: 60 QKVG 63
>gi|255283571|ref|ZP_05348126.1| DNA ligase, NAD-dependent [Bryantella formatexigens DSM 14469]
gi|255265833|gb|EET59038.1| DNA ligase, NAD-dependent [Bryantella formatexigens DSM 14469]
Length = 667
Score = 71.4 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ + ++ L++ H+ YY L+ P TD YDR+ + L AL+++ + P T
Sbjct: 2 EQKITRMKQLIQNLNKHRNAYYNLNAPTITDQEYDRLYDELAALEKE-TGVILSYSPTQT 60
Query: 117 VGY 119
VGY
Sbjct: 61 VGY 63
>gi|302344112|ref|YP_003808641.1| DNA ligase, NAD-dependent [Desulfarculus baarsii DSM 2075]
gi|301640725|gb|ADK86047.1| DNA ligase, NAD-dependent [Desulfarculus baarsii DSM 2075]
Length = 691
Score = 71.4 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 24/64 (37%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S A V L + + YY D LYD+ L+ L+ FP L D P
Sbjct: 5 SLSAAARRVAQLSEELRRWSRVYYNEGRQEVADALYDQRFAELEELERLFPMLRLADSPT 64
Query: 115 NTVG 118
VG
Sbjct: 65 RRVG 68
>gi|319777211|ref|YP_004136862.1| DNA ligase [Mycoplasma fermentans M64]
gi|318038286|gb|ADV34485.1| DNA ligase [Mycoplasma fermentans M64]
Length = 660
Score = 71.0 bits (173), Expect = 4e-11, Method: Composition-based stats.
Identities = 14/65 (21%), Positives = 32/65 (49%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ + ++ L K YY+ +NP +D YD+ + L+ L++++P+ + P
Sbjct: 1 MNALDIKKKIIELSNKLNQWNKEYYQDNNPSVSDFEYDKALQELEQLEKKYPQFIYVNSP 60
Query: 114 WNTVG 118
+G
Sbjct: 61 TQKLG 65
>gi|216263494|ref|ZP_03435489.1| DNA ligase, NAD-dependent [Borrelia afzelii ACA-1]
gi|215980338|gb|EEC21159.1| DNA ligase, NAD-dependent [Borrelia afzelii ACA-1]
Length = 660
Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 26/62 (41%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ E+ L K+ K YY P D +YD+ RL L+ ++PE D P
Sbjct: 3 SKIQQEIADLKKLIRKWNKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTLDSPTLK 62
Query: 117 VG 118
G
Sbjct: 63 FG 64
>gi|34558095|ref|NP_907910.1| NAD-dependent DNA ligase LigA [Wolinella succinogenes DSM 1740]
gi|81653397|sp|Q7M8A0|DNLJ_WOLSU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|34483813|emb|CAE10810.1| DNA LIGASE POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+] [Wolinella
succinogenes]
Length = 650
Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ + +E L YY LD PL TD YD++ A + Q PE P
Sbjct: 1 MNPDQYSQAIERL----NAWAHAYYVLDAPLATDEEYDQLYHEALAFERQNPERIHPASP 56
Query: 114 WNTVG 118
+G
Sbjct: 57 TQRIG 61
>gi|224418026|ref|ZP_03656032.1| NAD-dependent DNA ligase LigA [Helicobacter canadensis MIT 98-5491]
gi|253827358|ref|ZP_04870243.1| DNA ligase, NAD-dependent [Helicobacter canadensis MIT 98-5491]
gi|313141565|ref|ZP_07803758.1| DNA ligase polydeoxyribonucleotide synthase [Helicobacter
canadensis MIT 98-5491]
gi|253510764|gb|EES89423.1| DNA ligase, NAD-dependent [Helicobacter canadensis MIT 98-5491]
gi|313130596|gb|EFR48213.1| DNA ligase polydeoxyribonucleotide synthase [Helicobacter
canadensis MIT 98-5491]
Length = 650
Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 24/52 (46%)
Query: 67 VKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+K K YY LD+P+ +D YD + ++ + P +D P VG
Sbjct: 10 IKTLNLWAKHYYILDDPIASDEEYDALYHQIKEFEANNPTQISKDSPTQRVG 61
>gi|303281478|ref|XP_003060031.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458686|gb|EEH55983.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 887
Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 30/67 (44%)
Query: 52 TSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
++L E + L + + Y+ +P+ +D YD RL+AL+ P + ED
Sbjct: 75 SALPASEVPAAMASLAEFISRADEAYHNDADPVASDAAYDATRLRLEALEALHPAMIRED 134
Query: 112 HPWNTVG 118
P VG
Sbjct: 135 SPIGAVG 141
>gi|71894578|ref|YP_278686.1| DNA ligase [Mycoplasma synoviae 53]
gi|123734274|sp|Q4A5J6|DNLJ_MYCS5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|71851366|gb|AAZ43975.1| DNA ligase [Mycoplasma synoviae 53]
Length = 697
Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 27/65 (41%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+S + ++ L H YY LD P D YD + L L+ ++P L ED
Sbjct: 1 MSNQQIKEKIISLNNYLKHLNHLYYDLDAPEVDDKTYDSLYNELLELEAKYPSLVLEDSV 60
Query: 114 WNTVG 118
+G
Sbjct: 61 TKIIG 65
>gi|160940658|ref|ZP_02088001.1| hypothetical protein CLOBOL_05552 [Clostridium bolteae ATCC
BAA-613]
gi|158436393|gb|EDP14160.1| hypothetical protein CLOBOL_05552 [Clostridium bolteae ATCC
BAA-613]
Length = 699
Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 34 FLPNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRV 93
F NK+ +E+ + K + LS+ I + +LVK ++ YY ++ P +D +YD +
Sbjct: 14 FNDNKKIMEAHM-KQNQNEHLSQE--AIRIHHLVKQLNQYRHEYYNMNAPSVSDAVYDCL 70
Query: 94 SERLDALQEQFPELFDEDHPWNTVGY 119
+ LDAL+++ + + P TVGY
Sbjct: 71 FDELDALEKR-TGIILSNSPTQTVGY 95
>gi|322382981|ref|ZP_08056811.1| NAD-dependent DNA ligase LigA-like protein [Paenibacillus larvae
subsp. larvae B-3650]
gi|321153004|gb|EFX45464.1| NAD-dependent DNA ligase LigA-like protein [Paenibacillus larvae
subsp. larvae B-3650]
Length = 673
Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L++ H YY LD P TD YD + +RL L+++ + P VG
Sbjct: 8 MKILIEEINKHNYHYYTLDEPTITDQEYDALYDRLLKLEKE-SGTVLPNSPTLRVG 62
>gi|308061946|gb|ADO03834.1| NAD-dependent DNA ligase LigA [Helicobacter pylori Cuz20]
Length = 656
Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S+ E + +EYL HH YY LD+ + +D +YD + + L A +E+ P + P
Sbjct: 4 SQKEYLERIEYL-NTLSHH---YYNLDDSIVSDAVYDELYQELKAYEEKNPNSIQANSPT 59
Query: 115 NTVG 118
VG
Sbjct: 60 QKVG 63
>gi|297583057|ref|YP_003698837.1| DNA ligase [Bacillus selenitireducens MLS10]
gi|297141514|gb|ADH98271.1| DNA ligase, NAD-dependent [Bacillus selenitireducens MLS10]
Length = 668
Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 28/62 (45%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ ++ L + + YY LD P D YDR+ + L+ L+ PEL D P
Sbjct: 5 QDVQKRIDTLTETVNDYAHHYYVLDQPKVPDAEYDRLLQELEELEAAHPELKRSDSPSER 64
Query: 117 VG 118
VG
Sbjct: 65 VG 66
>gi|315649754|ref|ZP_07902837.1| NAD-dependent DNA ligase LigA [Paenibacillus vortex V453]
gi|315274728|gb|EFU38109.1| NAD-dependent DNA ligase LigA [Paenibacillus vortex V453]
Length = 670
Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L+ ++ YY LD PL +D YD + ++L AL+ + + D P VG
Sbjct: 4 KEKMGKLITELNNYNYHYYTLDQPLVSDKEYDALYDQLVALEAE-TGVTLPDSPTQRVG 61
>gi|312149444|gb|ADQ29515.1| DNA ligase, NAD-dependent [Borrelia burgdorferi N40]
Length = 660
Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 26/62 (41%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ E+ L K+ K YY P D +YD+ RL L+ ++PE D P
Sbjct: 3 SKVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTLDSPTLK 62
Query: 117 VG 118
G
Sbjct: 63 FG 64
>gi|224533503|ref|ZP_03674092.1| DNA ligase, NAD-dependent [Borrelia burgdorferi CA-11.2a]
gi|224513176|gb|EEF83538.1| DNA ligase, NAD-dependent [Borrelia burgdorferi CA-11.2a]
Length = 660
Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 26/62 (41%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ E+ L K+ K YY P D +YD+ RL L+ ++PE D P
Sbjct: 3 SKVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTLDSPTLK 62
Query: 117 VG 118
G
Sbjct: 63 FG 64
>gi|224532693|ref|ZP_03673310.1| DNA ligase, NAD-dependent [Borrelia burgdorferi WI91-23]
gi|224512311|gb|EEF82695.1| DNA ligase, NAD-dependent [Borrelia burgdorferi WI91-23]
Length = 660
Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 26/62 (41%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ E+ L K+ K YY P D +YD+ RL L+ ++PE D P
Sbjct: 3 SKVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTLDSPTLK 62
Query: 117 VG 118
G
Sbjct: 63 FG 64
>gi|221218112|ref|ZP_03589578.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 72a]
gi|221192060|gb|EEE18281.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 72a]
Length = 660
Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 26/62 (41%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ E+ L K+ K YY P D +YD+ RL L+ ++PE D P
Sbjct: 3 SKVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTLDSPTLK 62
Query: 117 VG 118
G
Sbjct: 63 FG 64
>gi|195941686|ref|ZP_03087068.1| DNA ligase (lig) [Borrelia burgdorferi 80a]
gi|225549484|ref|ZP_03770450.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 118a]
gi|225369761|gb|EEG99208.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 118a]
Length = 660
Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 26/62 (41%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ E+ L K+ K YY P D +YD+ RL L+ ++PE D P
Sbjct: 3 SKVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTLDSPTLK 62
Query: 117 VG 118
G
Sbjct: 63 FG 64
>gi|226321858|ref|ZP_03797384.1| DNA ligase, NAD-dependent [Borrelia burgdorferi Bol26]
gi|226233047|gb|EEH31800.1| DNA ligase, NAD-dependent [Borrelia burgdorferi Bol26]
Length = 660
Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 26/62 (41%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ E+ L K+ K YY P D +YD+ RL L+ ++PE D P
Sbjct: 3 SKVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTLDSPTLK 62
Query: 117 VG 118
G
Sbjct: 63 FG 64
>gi|218249478|ref|YP_002375058.1| DNA ligase, NAD-dependent [Borrelia burgdorferi ZS7]
gi|254781261|sp|B7J2B3|DNLJ_BORBZ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|218164666|gb|ACK74727.1| DNA ligase, NAD-dependent [Borrelia burgdorferi ZS7]
Length = 660
Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 26/62 (41%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ E+ L K+ K YY P D +YD+ RL L+ ++PE D P
Sbjct: 3 SKVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTLDSPTLK 62
Query: 117 VG 118
G
Sbjct: 63 FG 64
>gi|216264759|ref|ZP_03436751.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 156a]
gi|223888694|ref|ZP_03623285.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 64b]
gi|225548725|ref|ZP_03769772.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 94a]
gi|215981232|gb|EEC22039.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 156a]
gi|223885510|gb|EEF56609.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 64b]
gi|225370755|gb|EEH00191.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 94a]
Length = 660
Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 26/62 (41%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ E+ L K+ K YY P D +YD+ RL L+ ++PE D P
Sbjct: 3 SKVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTLDSPTLK 62
Query: 117 VG 118
G
Sbjct: 63 FG 64
>gi|15594897|ref|NP_212686.1| NAD-dependent DNA ligase LigA [Borrelia burgdorferi B31]
gi|7673988|sp|O51502|DNLJ_BORBU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|2688477|gb|AAC66923.1| DNA ligase (lig) [Borrelia burgdorferi B31]
Length = 660
Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 26/62 (41%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ E+ L K+ K YY P D +YD+ RL L+ ++PE D P
Sbjct: 3 SKVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTLDSPTLK 62
Query: 117 VG 118
G
Sbjct: 63 FG 64
>gi|167461915|ref|ZP_02327004.1| NAD-dependent DNA ligase LigA [Paenibacillus larvae subsp. larvae
BRL-230010]
Length = 363
Score = 70.7 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L++ H YY LD P TD YD + +RL L+++ + P VG
Sbjct: 8 MKILIEEINKHNYHYYTLDEPTITDQEYDALYDRLLKLEKE-SGTVLPNSPTLRVG 62
>gi|333030674|ref|ZP_08458735.1| DNA ligase [Bacteroides coprosuis DSM 18011]
gi|332741271|gb|EGJ71753.1| DNA ligase [Bacteroides coprosuis DSM 18011]
Length = 667
Score = 70.7 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 29/60 (48%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
A ++ L K YY L+ P +D +D + + L L+++ P+ D + P + +G
Sbjct: 3 AKDRIDELRKYLHQQNYKYYILNQPEISDKEFDDLLKELQDLEKKNPQYDDPNSPTHRIG 62
>gi|163736311|ref|ZP_02143730.1| DNA ligase, NAD-dependent [Phaeobacter gallaeciensis BS107]
gi|161390181|gb|EDQ14531.1| DNA ligase, NAD-dependent [Phaeobacter gallaeciensis BS107]
Length = 752
Score = 70.7 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 28/69 (40%)
Query: 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
+ SL+ EA L Y++ D+P +D YD AL E FPEL D
Sbjct: 8 NLKSLTSDEARARFLLLQDELRAADLAYHQADDPEISDADYDAKKREYRALAEHFPELAD 67
Query: 110 EDHPWNTVG 118
TVG
Sbjct: 68 GATALETVG 76
>gi|315452902|ref|YP_004073172.1| DNA ligase [Helicobacter felis ATCC 49179]
gi|315131954|emb|CBY82582.1| DNA ligase [Helicobacter felis ATCC 49179]
Length = 733
Score = 70.7 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 71 LHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
HH YY LD+PL +D YD + +++ + PE E P VG
Sbjct: 19 AHH---YYVLDDPLVSDFEYDTLYQQIQDYEHAHPEQILEHSPTQRVG 63
>gi|257467825|ref|ZP_05631921.1| NAD-dependent DNA ligase [Fusobacterium ulcerans ATCC 49185]
Length = 688
Score = 70.7 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+E L L + ++YY + L +D YD + L L+E++PE E P VG
Sbjct: 18 KERIEKLRADLLKYNQYYYTNNESLISDVEYDMLMNELKELEEKYPEYKSEASPTVIVG 76
>gi|225552370|ref|ZP_03773310.1| DNA ligase, NAD-dependent [Borrelia sp. SV1]
gi|225371368|gb|EEH00798.1| DNA ligase, NAD-dependent [Borrelia sp. SV1]
Length = 660
Score = 70.7 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 26/62 (41%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ E+ L K+ K YY P D +YD+ RL L+ ++PE D P
Sbjct: 3 SKVQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELENKYPEYKTLDSPTLK 62
Query: 117 VG 118
G
Sbjct: 63 FG 64
>gi|269219963|ref|ZP_06163817.1| DNA ligase, NAD-dependent [Actinomyces sp. oral taxon 848 str.
F0332]
gi|269210599|gb|EEZ76939.1| DNA ligase, NAD-dependent [Actinomyces sp. oral taxon 848 str.
F0332]
Length = 799
Score = 70.7 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 31/64 (48%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
+ G+A + + Q+ Y+ D P+ TD YDR+ L L+ + PEL + P
Sbjct: 10 NFGDARERWNEIAPLVSSAQRAYHSGDEPIVTDEHYDRLVRELRRLEAEHPELAVDSSPA 69
Query: 115 NTVG 118
+VG
Sbjct: 70 QSVG 73
>gi|237785838|ref|YP_002906543.1| NAD-dependent DNA ligase LigA [Corynebacterium kroppenstedtii DSM
44385]
gi|237758750|gb|ACR18000.1| DNA ligase [Corynebacterium kroppenstedtii DSM 44385]
Length = 686
Score = 70.7 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L HH+ YY + P+ +D +D + + L L+ PEL P VG
Sbjct: 6 QAQWNSLAADVRHHRDLYYNSE-PVISDAEFDHLFKTLQDLEADHPELAKNGSPTEEVG 63
>gi|219685109|ref|ZP_03539929.1| DNA ligase, NAD-dependent [Borrelia garinii Far04]
gi|219673205|gb|EED30224.1| DNA ligase, NAD-dependent [Borrelia garinii Far04]
Length = 660
Score = 70.7 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 25/61 (40%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+ E+E L K+ K YY P D +YD RL L+ + PE D P
Sbjct: 4 KIQQEIENLKKLIRKWDKEYYVDSLPSVEDFVYDNHILRLKELESKHPEYKTLDSPTLKF 63
Query: 118 G 118
G
Sbjct: 64 G 64
>gi|312147884|gb|ADQ30543.1| DNA ligase, NAD-dependent [Borrelia burgdorferi JD1]
Length = 660
Score = 70.7 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 25/60 (41%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E+ L K+ K YY P D +YD+ RL L+ ++PE D P G
Sbjct: 5 VQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTLDSPTLKFG 64
>gi|226320519|ref|ZP_03796084.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 29805]
gi|226234083|gb|EEH32799.1| DNA ligase, NAD-dependent [Borrelia burgdorferi 29805]
Length = 660
Score = 70.7 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 25/60 (41%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E+ L K+ K YY P D +YD+ RL L+ ++PE D P G
Sbjct: 5 VQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKYPEYKTLDSPTLKFG 64
>gi|284931737|gb|ADC31675.1| DNA ligase [Mycoplasma gallisepticum str. F]
Length = 715
Score = 70.3 bits (171), Expect = 8e-11, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 56 KGEAMIEV-EYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
K E++ E+ E LVK + YY L NP +D +YD L + ++P+ P
Sbjct: 5 KNESIKEIIEDLVKKLTKWEHEYYVLSNPSVSDEVYDNTYRTLLGYERKYPQYVLSYSPT 64
Query: 115 NTVG 118
VG
Sbjct: 65 QRVG 68
>gi|294660617|ref|NP_853482.2| DNA ligase [Mycoplasma gallisepticum str. R(low)]
gi|298286803|sp|Q7NAF8|DNLJ_MYCGA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|284812280|gb|AAP57050.2| DNA ligase [Mycoplasma gallisepticum str. R(low)]
gi|284930979|gb|ADC30918.1| DNA ligase [Mycoplasma gallisepticum str. R(high)]
Length = 715
Score = 70.3 bits (171), Expect = 8e-11, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 56 KGEAMIEV-EYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
K E++ E+ E LVK + YY L NP +D +YD L + ++P+ P
Sbjct: 5 KNESIKEIIEDLVKKLTKWEHEYYVLSNPSVSDEVYDNTYRTLLGYERKYPQYVLSYSPT 64
Query: 115 NTVG 118
VG
Sbjct: 65 QRVG 68
>gi|242309547|ref|ZP_04808702.1| DNA ligase polydeoxyribonucleotide synthase [Helicobacter pullorum
MIT 98-5489]
gi|239524118|gb|EEQ63984.1| DNA ligase polydeoxyribonucleotide synthase [Helicobacter pullorum
MIT 98-5489]
Length = 648
Score = 70.3 bits (171), Expect = 8e-11, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 67 VKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+K K YY LD+P+ +D YD + ++ + + P +D P VG
Sbjct: 10 IKTLNLWAKHYYILDDPIASDEEYDTLYHQIKEFEAKNPNQIAKDSPTQRVG 61
>gi|320533083|ref|ZP_08033816.1| DNA ligase, NAD-dependent [Actinomyces sp. oral taxon 171 str.
F0337]
gi|320134698|gb|EFW26913.1| DNA ligase, NAD-dependent [Actinomyces sp. oral taxon 171 str.
F0337]
Length = 825
Score = 70.3 bits (171), Expect = 8e-11, Method: Composition-based stats.
Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 3/86 (3%)
Query: 36 PNKRALESWLDKAKKVT-SLSKGEAMIEVEYLVKIALHHQKWYY-RLDNPL-FTDGLYDR 92
P + + D+ V S+ A LV+ + YY +D +D YD
Sbjct: 12 PTPASSSARSDRQSPVDLSVVPAAARERWSELVRDIEAARDAYYNAIDAESPLSDADYDA 71
Query: 93 VSERLDALQEQFPELFDEDHPWNTVG 118
+ L+ L+ P L P +VG
Sbjct: 72 LYRELEGLEAAHPLLARAGSPTRSVG 97
>gi|229819870|ref|YP_002881396.1| DNA ligase, NAD-dependent [Beutenbergia cavernae DSM 12333]
gi|229565783|gb|ACQ79634.1| DNA ligase, NAD-dependent [Beutenbergia cavernae DSM 12333]
Length = 782
Score = 70.3 bits (171), Expect = 8e-11, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 1/84 (1%)
Query: 35 LPNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVS 94
+ RA + L T EA L + + YY D P +D +D +
Sbjct: 1 MSAPRATIA-LVTPSMPTPPVPPEAAHRWAELAQQVNDARFAYYVKDAPTLSDAAFDALL 59
Query: 95 ERLDALQEQFPELFDEDHPWNTVG 118
L+AL+E PEL D P VG
Sbjct: 60 HELEALEESHPELRVPDSPTQQVG 83
>gi|307720805|ref|YP_003891945.1| DNA ligase, NAD-dependent [Sulfurimonas autotrophica DSM 16294]
gi|306978898|gb|ADN08933.1| DNA ligase, NAD-dependent [Sulfurimonas autotrophica DSM 16294]
Length = 650
Score = 70.3 bits (171), Expect = 9e-11, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E + V+ YY LD+P+ TD +YD++ + ++ +E PE ++ P VG
Sbjct: 3 KQEYKQAVEKLNLWAYHYYVLDDPIMTDEVYDKLYKEVEQYEEAHPEDILKNSPTQRVG 61
>gi|227498227|ref|ZP_03928396.1| DNA ligase (NAD(+)) [Actinomyces urogenitalis DSM 15434]
gi|226832370|gb|EEH64753.1| DNA ligase (NAD(+)) [Actinomyces urogenitalis DSM 15434]
Length = 827
Score = 70.3 bits (171), Expect = 9e-11, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
Query: 48 AKKVTSLSKGEAMIEVEYLVKIALHHQKWYY-RLDN-PLFTDGLYDRVSERLDALQEQFP 105
+ EA E L ++ + YY LD +D YD + L+ L+ +P
Sbjct: 19 PRDDAEAVPQEARRRWEELAELVERARAAYYDALDAESTTSDAAYDALYRELEDLEAAWP 78
Query: 106 ELFDEDHPWNTVG 118
+L P +VG
Sbjct: 79 QLRVPHSPTRSVG 91
>gi|284929444|ref|YP_003421966.1| DNA ligase, NAD-dependent [cyanobacterium UCYN-A]
gi|284809888|gb|ADB95585.1| DNA ligase, NAD-dependent [cyanobacterium UCYN-A]
Length = 682
Score = 70.3 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 25/56 (44%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L K Y+ L+ + D +YD++ +L L+++ P L D VG
Sbjct: 10 IIKLRKHLQQANYAYHVLNESIMEDSVYDQLYRQLYNLEQRNPNLISSDSVTQRVG 65
>gi|308182775|ref|YP_003926902.1| NAD-dependent DNA ligase LigA [Helicobacter pylori PeCan4]
gi|308064960|gb|ADO06852.1| NAD-dependent DNA ligase LigA [Helicobacter pylori PeCan4]
Length = 656
Score = 69.9 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S+ E + +EYL HH YY LD + +D +YD + + L A +E+ P + P
Sbjct: 4 SQKEYLERIEYL-NTLSHH---YYNLDESIVSDAVYDELYQELKAYEEKNPNSIQANSPT 59
Query: 115 NTVG 118
VG
Sbjct: 60 QKVG 63
>gi|224534829|ref|ZP_03675401.1| DNA ligase, NAD-dependent [Borrelia spielmanii A14S]
gi|224514077|gb|EEF84399.1| DNA ligase, NAD-dependent [Borrelia spielmanii A14S]
Length = 660
Score = 69.9 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ E+ L K+ K YY P D +YD RL L+ ++PE D P
Sbjct: 3 SKIQQEIANLKKLIRKWDKEYYVDSLPSVEDFVYDEHILRLQELESKYPEYKTLDSPTLK 62
Query: 117 VG 118
G
Sbjct: 63 FG 64
>gi|85057601|ref|YP_456517.1| NAD-dependent DNA ligase [Aster yellows witches'-broom phytoplasma
AYWB]
gi|123725342|sp|Q2NJF5|DNLJ_AYWBP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|84789706|gb|ABC65438.1| NAD-dependent DNA ligase [Aster yellows witches'-broom phytoplasma
AYWB]
Length = 671
Score = 69.9 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 26/60 (43%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ LVK YY L +P +D YD + + L L+ +P+ P +G
Sbjct: 7 IKQKIKSLVKQLNKANYQYYNLSDPDLSDQQYDALIKELINLENHYPQFKLPYSPTLKIG 66
>gi|224531714|ref|ZP_03672346.1| DNA ligase, NAD-dependent [Borrelia valaisiana VS116]
gi|224511179|gb|EEF81585.1| DNA ligase, NAD-dependent [Borrelia valaisiana VS116]
Length = 660
Score = 69.9 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 26/62 (41%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ E+ L K+ K YY P D +YD+ RL L+ ++PE D P
Sbjct: 3 SKVQQEIADLKKLIRKWDKEYYVDSLPSVEDFIYDKHILRLQELESKYPEYKTLDSPTLK 62
Query: 117 VG 118
G
Sbjct: 63 FG 64
>gi|325479535|gb|EGC82631.1| DNA ligase (NAD+) [Anaerococcus prevotii ACS-065-V-Col13]
Length = 669
Score = 69.9 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+ E+ L++ YY LD PL +DG YD + +RL L+++ +E+ P V
Sbjct: 2 DIREEINQLIEEINRLNYHYYTLDEPLVSDGEYDEIYDRLVKLEDK-SGYINENSPTQKV 60
Query: 118 G 118
G
Sbjct: 61 G 61
>gi|308233598|ref|ZP_07664335.1| DNA ligase, NAD-dependent [Atopobium vaginae DSM 15829]
gi|328944216|ref|ZP_08241680.1| DNA ligase [Atopobium vaginae DSM 15829]
gi|327491135|gb|EGF22910.1| DNA ligase [Atopobium vaginae DSM 15829]
Length = 792
Score = 69.9 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
V L K+ +H YY LD PL TD +D + L L++ +P L DE + +G
Sbjct: 84 EARVRELRKLLEYHAYRYYALDAPLITDNQFDSYLQELLHLEKTYPYLDDEHSYTHRIG 142
>gi|119953337|ref|YP_945546.1| NAD-dependent DNA ligase LigA [Borrelia turicatae 91E135]
gi|254781266|sp|A1QZY4|DNLJ_BORT9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|119862108|gb|AAX17876.1| NAD-dependent DNA ligase [Borrelia turicatae 91E135]
Length = 676
Score = 69.9 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 25/62 (40%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ E+ L K YY +P +D YD+ RL L+ ++PE D P
Sbjct: 11 KDIEDEILCLRDNIRKWNKEYYVDSSPSVSDLTYDKALLRLQDLESKYPEYKTLDSPTLK 70
Query: 117 VG 118
G
Sbjct: 71 FG 72
>gi|88803633|ref|ZP_01119157.1| putative DNA ligase [Polaribacter irgensii 23-P]
gi|88780366|gb|EAR11547.1| putative DNA ligase [Polaribacter irgensii 23-P]
Length = 665
Score = 69.9 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
A ++ L H YY LDN + +D +D ++L+ L+++ P LFD + P VG
Sbjct: 3 AAQTIQLLRDELNTHNYNYYVLDNGMISDFDFDVKLKKLEQLEKENPLLFDANSPTQRVG 62
>gi|253583310|ref|ZP_04860508.1| DNA ligase [Fusobacterium varium ATCC 27725]
gi|251833882|gb|EES62445.1| DNA ligase [Fusobacterium varium ATCC 27725]
Length = 688
Score = 69.9 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+E L L + ++YY + L +D YD + L L+E++PE E P VG
Sbjct: 18 KERIEKLRADLLKYNQYYYTNNESLISDVEYDMLMNELKDLEEKYPEYKSEASPTVIVG 76
>gi|328957928|ref|YP_004375314.1| NAD-dependent DNA ligase LigA [Carnobacterium sp. 17-4]
gi|328674252|gb|AEB30298.1| NAD-dependent DNA ligase LigA [Carnobacterium sp. 17-4]
Length = 645
Score = 69.9 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 80 LDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
D P D YD++ L AL+E FP+L D P +G
Sbjct: 2 KDAPSIPDTDYDKLYNELVALEEAFPDLISNDSPTQRIG 40
>gi|308184399|ref|YP_003928532.1| NAD-dependent DNA ligase LigA [Helicobacter pylori SJM180]
gi|308060319|gb|ADO02215.1| NAD-dependent DNA ligase LigA [Helicobacter pylori SJM180]
Length = 656
Score = 69.5 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S+ E + +EYL HH YY LD + +D +YD + + L A +E+ P + P
Sbjct: 4 SQKEYLERIEYL-NTLSHH---YYNLDESIVSDAVYDELYQELKAYEEENPNRIQANSPT 59
Query: 115 NTVG 118
VG
Sbjct: 60 QKVG 63
>gi|307637302|gb|ADN79752.1| NAD-dependent DNA ligase [Helicobacter pylori 908]
gi|325995893|gb|ADZ51298.1| DNA ligase [Helicobacter pylori 2018]
gi|325997488|gb|ADZ49696.1| NAD-dependent DNA ligase [Helicobacter pylori 2017]
Length = 656
Score = 69.5 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S+ E + +EYL HH YY LD + +D +YD + + L A +E+ P + P
Sbjct: 4 SQKEYLERIEYL-NTLSHH---YYNLDESIVSDAVYDELYQELKAYEEENPNHIQANSPT 59
Query: 115 NTVG 118
VG
Sbjct: 60 QKVG 63
>gi|219684330|ref|ZP_03539274.1| DNA ligase, NAD-dependent [Borrelia garinii PBr]
gi|219672319|gb|EED29372.1| DNA ligase, NAD-dependent [Borrelia garinii PBr]
Length = 660
Score = 69.5 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 24/61 (39%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+ E+E L K+ K YY P D +YD RL L+ PE D P
Sbjct: 4 KIQQEIEDLKKLIRKWDKEYYVDSLPSVEDFVYDNHILRLKELESTHPEYKTLDSPTLKF 63
Query: 118 G 118
G
Sbjct: 64 G 64
>gi|259416760|ref|ZP_05740680.1| DNA ligase, NAD-dependent [Silicibacter sp. TrichCH4B]
gi|259348199|gb|EEW59976.1| DNA ligase, NAD-dependent [Silicibacter sp. TrichCH4B]
Length = 739
Score = 69.5 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ +A E E L Y++ D P +D YDR+ R AL E FPEL +E
Sbjct: 1 MNVTDARKEFEALQTKIEAADLDYHQKDAPTLSDAEYDRLKRRYLALAEAFPELAEEGTR 60
Query: 114 WNTVG 118
+VG
Sbjct: 61 VESVG 65
>gi|168017901|ref|XP_001761485.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687169|gb|EDQ73553.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1163
Score = 69.5 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
Query: 33 KFLPNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDR 92
K L + D + L G+ + VE L ++ + Y+ L NPL +D YD
Sbjct: 291 KLLAASKGAVETADSESEHP-LVDGDILDRVETLRRVIADYSYQYHTLGNPLISDSAYDA 349
Query: 93 VSERLDALQEQFPELFDEDHPWNTVG 118
+ L L+ + P E+ VG
Sbjct: 350 LVRELKDLESKLPAEASEESVTAKVG 375
>gi|228982993|ref|ZP_04143252.1| DNA ligase, NAD-dependent [Bacillus thuringiensis Bt407]
gi|228777176|gb|EEM25484.1| DNA ligase, NAD-dependent [Bacillus thuringiensis Bt407]
Length = 669
Score = 69.5 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+++ L + + H Y P+ TD YD++ L +L+E+ PE DE+ P +
Sbjct: 2 IEQKIKQLREEVMKHDLLY-DEGTPIITDSEYDQMYYELVSLEEKHPEFADENSPTKRI 59
>gi|210134818|ref|YP_002301257.1| NAD-dependent DNA ligase LigA [Helicobacter pylori P12]
gi|254781345|sp|B6JLJ9|DNLJ_HELP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|210132786|gb|ACJ07777.1| DNA ligase [Helicobacter pylori P12]
Length = 656
Score = 69.5 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S+ E + +EYL HH YY LD + +D +YD + + L A +E+ P + P
Sbjct: 4 SQKEYLERIEYL-NTLSHH---YYNLDESIVSDAVYDELYQELKAYEEKNPNDIQANSPT 59
Query: 115 NTVG 118
VG
Sbjct: 60 QKVG 63
>gi|203287992|ref|YP_002223007.1| DNA ligase [Borrelia recurrentis A1]
gi|254781265|sp|B5RPQ2|DNLJ_BORRA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|201085212|gb|ACH94786.1| DNA ligase [Borrelia recurrentis A1]
Length = 669
Score = 69.5 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 24/62 (38%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ E+ L + YY +P D YD+ RL L+ ++PE D P
Sbjct: 3 KDIKDEILSLRDAIKKWDREYYVDSSPTVGDVTYDKALLRLQYLENRYPEYKTLDSPTLK 62
Query: 117 VG 118
G
Sbjct: 63 FG 64
>gi|203284458|ref|YP_002222198.1| DNA ligase [Borrelia duttonii Ly]
gi|254781262|sp|B5RMA6|DNLJ_BORDL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|201083901|gb|ACH93492.1| DNA ligase [Borrelia duttonii Ly]
Length = 669
Score = 69.5 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 24/62 (38%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ E+ L + YY +P D YD+ RL L+ ++PE D P
Sbjct: 3 KDIKDEILSLRDAIKKWDREYYVDSSPTVGDVTYDKALLRLQYLENRYPEYKTLDSPTLK 62
Query: 117 VG 118
G
Sbjct: 63 FG 64
>gi|62185205|ref|YP_219990.1| NAD-dependent DNA ligase LigA [Chlamydophila abortus S26/3]
gi|81312632|sp|Q5L5Q2|DNLJ_CHLAB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|62148272|emb|CAH64037.1| putative DNA ligase [Chlamydophila abortus S26/3]
Length = 660
Score = 69.5 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 25/65 (38%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + + L K YY L NP +D YD +L +++ Q PE P
Sbjct: 1 MQSTYSREQYISLCKDIEEDDYRYYVLHNPTISDYDYDMKMRQLLSIEAQHPEWKVLWSP 60
Query: 114 WNTVG 118
+G
Sbjct: 61 SMRLG 65
>gi|239928777|ref|ZP_04685730.1| NAD-dependent DNA ligase LigA [Streptomyces ghanaensis ATCC 14672]
gi|291437098|ref|ZP_06576488.1| NAD-dependent DNA ligase LigA [Streptomyces ghanaensis ATCC 14672]
gi|291339993|gb|EFE66949.1| NAD-dependent DNA ligase LigA [Streptomyces ghanaensis ATCC 14672]
Length = 731
Score = 69.5 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 35/71 (49%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
+ T+ EA + L + H+ YY D P+ +D +DR+ L+AL+E++PE
Sbjct: 4 DQQAETTNVPAEAREQHVQLAEQIEEHRFRYYVNDAPVISDAEFDRLLRELEALEEEYPE 63
Query: 107 LFDEDHPWNTV 117
L D P V
Sbjct: 64 LRTPDSPTQKV 74
>gi|322379217|ref|ZP_08053608.1| NAD-dependent DNA ligase LigA [Helicobacter suis HS1]
gi|321148357|gb|EFX42866.1| NAD-dependent DNA ligase LigA [Helicobacter suis HS1]
Length = 680
Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 28/55 (50%)
Query: 64 EYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++LV + YY L +PL +D +YD++ ++ + ++P+ P VG
Sbjct: 9 KHLVDKLCQYAYHYYVLASPLISDAIYDQLYRQVLDYETKYPQNILPYSPTQRVG 63
>gi|322379711|ref|ZP_08054024.1| NAD-dependent DNA ligase LigA [Helicobacter suis HS5]
gi|321147860|gb|EFX42447.1| NAD-dependent DNA ligase LigA [Helicobacter suis HS5]
Length = 762
Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 28/55 (50%)
Query: 64 EYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++LV + YY L +PL +D +YD++ ++ + ++P+ P VG
Sbjct: 9 KHLVDKLCQYAYHYYVLASPLISDAIYDQLYRQVLDYETKYPQNILPYSPTQRVG 63
>gi|268679995|ref|YP_003304426.1| DNA ligase, NAD-dependent [Sulfurospirillum deleyianum DSM 6946]
gi|268618026|gb|ACZ12391.1| DNA ligase, NAD-dependent [Sulfurospirillum deleyianum DSM 6946]
Length = 648
Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 27/57 (47%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E ++I K YY D P+ +D YDR+ + A +++ P DE P VG
Sbjct: 5 EYSEKIEILKAWAKAYYVDDAPIASDEEYDRLYHEILAFEKENPLFADESSPTKRVG 61
>gi|227548037|ref|ZP_03978086.1| DNA ligase (NAD(+)) [Corynebacterium lipophiloflavum DSM 44291]
gi|227079891|gb|EEI17854.1| DNA ligase (NAD(+)) [Corynebacterium lipophiloflavum DSM 44291]
Length = 689
Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ + L HH+ YY + +D +D++ L A +E PEL + P VG
Sbjct: 28 QWDDLASQVRHHRDLYYNGQQ-VISDAEFDKLFNNLVAFEEAHPELAVPESPTKEVG 83
>gi|302392792|ref|YP_003828612.1| DNA ligase, NAD-dependent [Acetohalobium arabaticum DSM 5501]
gi|302204869|gb|ADL13547.1| DNA ligase, NAD-dependent [Acetohalobium arabaticum DSM 5501]
Length = 671
Score = 68.7 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E++ L+ + YY LD+PL +D YD++ +RL L+E+ ++ P VG
Sbjct: 8 EQEMKKLINKLNKYNYHYYVLDDPLVSDKEYDQLYDRLVELEEETGKVLSG-SPTQRVG 65
>gi|158319601|ref|YP_001512108.1| NAD-dependent DNA ligase LigA [Alkaliphilus oremlandii OhILAs]
gi|190359226|sp|A8MLJ8|DNLJ_ALKOO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|158139800|gb|ABW18112.1| DNA ligase, NAD-dependent [Alkaliphilus oremlandii OhILAs]
Length = 661
Score = 68.7 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL--FDEDHPWNT 116
+M + LV I + YY LD P+ +D YD++ + L L++ EL ED P
Sbjct: 3 SMERLRQLVDILNEYSYQYYVLDEPVVSDKEYDQLYDELVLLEK---ELNTVLEDSPTIR 59
Query: 117 VG 118
VG
Sbjct: 60 VG 61
>gi|237804493|ref|YP_002888647.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis B/TZ1A828/OT]
gi|231272793|emb|CAX09699.1| NAD-dependent DNA ligase [Chlamydia trachomatis B/TZ1A828/OT]
Length = 663
Score = 68.7 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 22/53 (41%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L + H + YY L+ P +D YD L ++ Q PE P +G
Sbjct: 12 LCAELVEHDRRYYVLNQPTISDYSYDVKMRELQEIEVQHPEWKVSWSPTMYLG 64
>gi|221195651|ref|ZP_03568705.1| DNA ligase, NAD-dependent [Atopobium rimae ATCC 49626]
gi|221184417|gb|EEE16810.1| DNA ligase, NAD-dependent [Atopobium rimae ATCC 49626]
Length = 706
Score = 68.7 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 54 LSKGE--AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
+S+ E L +I H YY LD P TD +DR+ L ++ PEL +
Sbjct: 1 MSEAEKSFRSRAAELNRILNHAAYAYYALDAPELTDAEFDRLLVELQGIEAAHPELIVPE 60
Query: 112 HPWNTVG 118
VG
Sbjct: 61 SYTQRVG 67
>gi|188527537|ref|YP_001910224.1| NAD-dependent DNA ligase LigA [Helicobacter pylori Shi470]
gi|254781347|sp|B2UTL2|DNLJ_HELPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|188143777|gb|ACD48194.1| NAD-dependent DNA ligase LigA [Helicobacter pylori Shi470]
Length = 656
Score = 68.7 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S+ E + +EYL HH YY LD+ + +D +YD + + L A + + P + P
Sbjct: 4 SQKEYLERIEYL-NTLSHH---YYNLDDSIVSDAVYDELYQELKAYEGKNPNSIQANSPT 59
Query: 115 NTVG 118
VG
Sbjct: 60 QKVG 63
>gi|329942957|ref|ZP_08291736.1| DNA ligase, NAD-dependent [Chlamydophila psittaci Cal10]
gi|332287548|ref|YP_004422449.1| NAD-dependent DNA ligase [Chlamydophila psittaci 6BC]
gi|313848123|emb|CBY17124.1| putative DNA ligase [Chlamydophila psittaci RD1]
gi|325506604|gb|ADZ18242.1| NAD-dependent DNA ligase [Chlamydophila psittaci 6BC]
gi|328815217|gb|EGF85206.1| DNA ligase, NAD-dependent [Chlamydophila psittaci Cal10]
gi|328914798|gb|AEB55631.1| DNA ligase, NAD-dependent [Chlamydophila psittaci 6BC]
Length = 660
Score = 68.7 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 22/53 (41%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L K YY L NP +D YD +L +++ Q PE P +G
Sbjct: 13 LCKDIEEDDYRYYVLHNPTISDYDYDMKMRQLLSIEAQHPEWKVLWSPSMRLG 65
>gi|172040410|ref|YP_001800124.1| NAD-dependent DNA ligase LigA [Corynebacterium urealyticum DSM
7109]
gi|254781300|sp|B1VG01|DNLJ_CORU7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|171851714|emb|CAQ04690.1| DNA ligase [Corynebacterium urealyticum DSM 7109]
Length = 712
Score = 68.3 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
E + + L HH++ YY NP +D +D + RL + PE P
Sbjct: 24 AELAQQWQSLADQVRHHREVYY-YGNPEISDAEFDALLTRLQEFENSHPEAVTGPSPTTE 82
Query: 117 V 117
V
Sbjct: 83 V 83
>gi|99081239|ref|YP_613393.1| DNA ligase, NAD-dependent [Ruegeria sp. TM1040]
gi|122984289|sp|Q1GGT5|DNLJ_SILST RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|99037519|gb|ABF64131.1| DNA ligase NAD-dependent [Ruegeria sp. TM1040]
Length = 739
Score = 68.3 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
+ + +A E E L Y++ D P +D YDR+ R AL + FP L
Sbjct: 1 MDEADARAEFEALQTKIEKADHDYHQKDAPTLSDADYDRLKRRYLALADAFPIL 54
>gi|304440548|ref|ZP_07400435.1| NAD-dependent DNA ligase LigA [Peptoniphilus duerdenii ATCC
BAA-1640]
gi|304371026|gb|EFM24645.1| NAD-dependent DNA ligase LigA [Peptoniphilus duerdenii ATCC
BAA-1640]
Length = 650
Score = 68.3 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ LV++ + YY LD PL D YDR+ + L L+++ D P N VG
Sbjct: 3 KRIDELVELLNKYSYHYYTLDEPLVADVEYDRLYDELVKLEKE-TGYIRPDSPTNRVG 59
>gi|163741160|ref|ZP_02148552.1| DNA ligase, NAD-dependent [Phaeobacter gallaeciensis 2.10]
gi|161385513|gb|EDQ09890.1| DNA ligase, NAD-dependent [Phaeobacter gallaeciensis 2.10]
Length = 741
Score = 68.3 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 26/65 (40%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ EA L Y++ D+P +D YD AL E FPEL D
Sbjct: 1 MTSDEARARFLLLQDELRVADLAYHQADDPEISDADYDAKKREYRALAEHFPELADGATA 60
Query: 114 WNTVG 118
TVG
Sbjct: 61 LETVG 65
>gi|28211984|ref|NP_782928.1| NAD-dependent DNA ligase LigA [Clostridium tetani E88]
gi|75541732|sp|Q891I0|DNLJ_CLOTE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|28204427|gb|AAO36865.1| NAD-dependent DNA ligase [Clostridium tetani E88]
Length = 668
Score = 68.3 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
E + L++ + YY LDNP +D YD+ + L L+++ P
Sbjct: 5 EEKKRRIHELIEELNKYAYEYYVLDNPTVSDKEYDKRYDELVNLEKE-TGFVLSYSPTQR 63
Query: 117 VG 118
VG
Sbjct: 64 VG 65
>gi|207109554|ref|ZP_03243716.1| NAD-dependent DNA ligase LigA [Helicobacter pylori HPKX_438_CA4C1]
Length = 87
Score = 68.3 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S+ E + + YL HH YY LD+P+ +D +YD + + L A +E+ P + P
Sbjct: 4 SQKEYLERIAYL-NTLSHH---YYNLDDPIVSDAVYDELYQELKAYEEKNPNSIQANSPT 59
Query: 115 NTVG 118
VG
Sbjct: 60 QKVG 63
>gi|261337889|ref|ZP_05965773.1| DNA ligase, NAD-dependent [Bifidobacterium gallicum DSM 20093]
gi|270277364|gb|EFA23218.1| DNA ligase, NAD-dependent [Bifidobacterium gallicum DSM 20093]
Length = 906
Score = 68.3 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 27/69 (39%)
Query: 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
V +L A + Q YY P+ +D YD L+A++ +PEL
Sbjct: 32 DVPALGAERARTLWRKVASWVEADQVAYYIDSAPISSDAAYDARLRFLEAMERAYPELDV 91
Query: 110 EDHPWNTVG 118
P + VG
Sbjct: 92 PSSPTHRVG 100
>gi|237802575|ref|YP_002887769.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis B/Jali20/OT]
gi|231273809|emb|CAX10593.1| NAD-dependent DNA ligase [Chlamydia trachomatis B/Jali20/OT]
Length = 663
Score = 68.3 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 22/53 (41%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L + H + YY L+ P +D YD L ++ Q PE P +G
Sbjct: 12 LCTELVEHDRRYYVLNQPTISDYSYDVKMRELQEIEVQHPEWKVSWSPTMYLG 64
>gi|15604865|ref|NP_219649.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis D/UW-3/CX]
gi|7673995|sp|O84148|DNLJ_CHLTR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|3328547|gb|AAC67737.1| DNA Ligase [Chlamydia trachomatis D/UW-3/CX]
gi|289525187|emb|CBJ14662.1| NAD-dependent DNA ligase [Chlamydia trachomatis Sweden2]
gi|297748276|gb|ADI50822.1| NAD-dependent DNA ligase [Chlamydia trachomatis D-EC]
gi|297749156|gb|ADI51834.1| NAD-dependent DNA ligase [Chlamydia trachomatis D-LC]
Length = 663
Score = 68.3 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 22/53 (41%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L + H + YY L+ P +D YD L ++ Q PE P +G
Sbjct: 12 LCTELVEHDRRYYVLNQPTISDYSYDVKMRELQEIEVQHPEWKVSWSPTMYLG 64
>gi|254779395|ref|YP_003057500.1| NAD-dependent DNA ligase LigA [Helicobacter pylori B38]
gi|254001306|emb|CAX29287.1| DNA ligase (NAD(+)) [Helicobacter pylori B38]
Length = 656
Score = 68.3 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S+ E + + YL HH YY LD + +D +YD + + L A +E+ P + P
Sbjct: 4 SQKEYLERIAYL-NTLSHH---YYNLDESIVSDAVYDELYQELKAYEEENPNDIQANSPT 59
Query: 115 NTVG 118
VG
Sbjct: 60 QKVG 63
>gi|255310946|ref|ZP_05353516.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis 6276]
gi|255317247|ref|ZP_05358493.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis 6276s]
gi|296435662|gb|ADH17836.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis G/9768]
gi|296436585|gb|ADH18755.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis G/11222]
gi|296437522|gb|ADH19683.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis G/11074]
gi|297140021|gb|ADH96779.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis G/9301]
Length = 663
Score = 68.3 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 22/53 (41%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L + H + YY L+ P +D YD L ++ Q PE P +G
Sbjct: 12 LCTELVEHDRRYYVLNQPTISDYSYDVKMRELQEIEVQHPEWKVSWSPTMYLG 64
>gi|208434535|ref|YP_002266201.1| DNA ligase [Helicobacter pylori G27]
gi|254781346|sp|B5Z6Y6|DNLJ_HELPG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|208432464|gb|ACI27335.1| DNA ligase [Helicobacter pylori G27]
Length = 658
Score = 68.0 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
S+ E + + YL HH YY LD + +D +YD + + L A +E+ P + P
Sbjct: 4 SQKEYLERIAYL-NTLSHH---YYNLDESIVSDAVYDELYQELKAYEEKNPNDIQANSPT 59
Query: 115 NTVG 118
VG
Sbjct: 60 QKVG 63
>gi|302874256|ref|YP_003842889.1| DNA ligase, NAD-dependent [Clostridium cellulovorans 743B]
gi|307689480|ref|ZP_07631926.1| NAD-dependent DNA ligase LigA [Clostridium cellulovorans 743B]
gi|302577113|gb|ADL51125.1| DNA ligase, NAD-dependent [Clostridium cellulovorans 743B]
Length = 665
Score = 68.0 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ ++ +E L++ YY LDNP +D YD++ + L L+++ P
Sbjct: 1 MEISDSKKRIEELIEQLNKFAYEYYALDNPSISDKEYDKLYDELTILEKE-TGYILSYSP 59
Query: 114 WNTVG 118
VG
Sbjct: 60 TQRVG 64
>gi|299144358|ref|ZP_07037438.1| DNA ligase, NAD-dependent [Peptoniphilus sp. oral taxon 386 str.
F0131]
gi|298518843|gb|EFI42582.1| DNA ligase, NAD-dependent [Peptoniphilus sp. oral taxon 386 str.
F0131]
Length = 664
Score = 68.0 bits (165), Expect = 5e-10, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E + + L+ YY LD+P+ +D YD + L L+++ ++ + P V
Sbjct: 2 EIIDRIRELIDKVNKLNYHYYTLDDPIVSDAEYDELYYELKKLEDEN-KIILANSPTTRV 60
Query: 118 G 118
G
Sbjct: 61 G 61
>gi|315638276|ref|ZP_07893457.1| NAD-dependent DNA ligase LigA [Campylobacter upsaliensis JV21]
gi|315481623|gb|EFU72246.1| NAD-dependent DNA ligase LigA [Campylobacter upsaliensis JV21]
Length = 644
Score = 67.6 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+S+ +E+ L + YY D PL +D YDR+ + A +++ P L D P
Sbjct: 1 MSEYLKKVELANL------WMRAYYEEDEPLASDEEYDRLIREIKAFEKENPSLISPDSP 54
Query: 114 WNTV 117
+
Sbjct: 55 TQKI 58
>gi|261749390|ref|YP_003257075.1| DNA ligase [Blattabacterium sp. (Periplaneta americana) str. BPLAN]
gi|261497482|gb|ACX83932.1| DNA ligase [Blattabacterium sp. (Periplaneta americana) str. BPLAN]
Length = 678
Score = 67.6 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 14/64 (21%), Positives = 29/64 (45%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
++ + ++ L K + YY L+ +D +D+ L L+++ PE +D P
Sbjct: 6 NQKDIKEKIYQLRKKLSEYNYQYYALNTSEISDYNFDKKLRELFLLEKEHPEFYDPSSPT 65
Query: 115 NTVG 118
+G
Sbjct: 66 LRIG 69
>gi|15618073|ref|NP_224357.1| NAD-dependent DNA ligase LigA [Chlamydophila pneumoniae CWL029]
gi|15835684|ref|NP_300208.1| NAD-dependent DNA ligase LigA [Chlamydophila pneumoniae J138]
gi|16752895|ref|NP_445166.1| NAD-dependent DNA ligase LigA [Chlamydophila pneumoniae AR39]
gi|33241485|ref|NP_876426.1| NAD-dependent DNA ligase LigA [Chlamydophila pneumoniae TW-183]
gi|7674003|sp|Q9Z934|DNLJ_CHLPN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|4376415|gb|AAD18302.1| DNA Ligase [Chlamydophila pneumoniae CWL029]
gi|7189537|gb|AAF38439.1| DNA ligase [Chlamydophila pneumoniae AR39]
gi|8978522|dbj|BAA98359.1| DNA ligase [Chlamydophila pneumoniae J138]
gi|33235993|gb|AAP98083.1| DNA ligase (NAD+) [Chlamydophila pneumoniae TW-183]
Length = 662
Score = 67.6 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 14/65 (21%), Positives = 23/65 (35%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + + L + H YY L P +D YD +L ++ PE P
Sbjct: 1 MKEENSQAHYLALCRELEDHDYSYYVLHRPRISDYEYDMKLRKLLEIERSHPEWKVLWSP 60
Query: 114 WNTVG 118
+G
Sbjct: 61 STRLG 65
>gi|166788183|emb|CAP40308.1| NAD-dependent DNA ligase [Candidatus Phytoplasma solani]
Length = 333
Score = 67.6 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 28/60 (46%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
A+ +++ LVK+ YY L NP D YD + + L L+ +P+ P +G
Sbjct: 5 AIKKIKSLVKLLNEANYQYYNLSNPKINDQQYDALLKELIILETNYPQHRLPYSPTLKIG 64
>gi|269303032|gb|ACZ33132.1| DNA ligase, NAD-dependent [Chlamydophila pneumoniae LPCoLN]
Length = 662
Score = 67.2 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 14/65 (21%), Positives = 23/65 (35%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + + L + H YY L P +D YD +L ++ PE P
Sbjct: 1 MKEENSQAHYLALCRELEDHDYSYYVLHRPRISDYEYDMKLRKLLEIERSHPEWKVLWSP 60
Query: 114 WNTVG 118
+G
Sbjct: 61 STRLG 65
>gi|294790698|ref|ZP_06755856.1| DNA ligase, NAD-dependent [Scardovia inopinata F0304]
gi|294458595|gb|EFG26948.1| DNA ligase, NAD-dependent [Scardovia inopinata F0304]
Length = 815
Score = 67.2 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 28/69 (40%)
Query: 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
V L +A + Q YY D+P+ +D YD + L L+ FP+L +
Sbjct: 24 NVADLDTSQAAHLWAKVASWVEDDQLAYYVNDSPISSDAAYDERMKTLQRLEAHFPQLDN 83
Query: 110 EDHPWNTVG 118
+ VG
Sbjct: 84 PQSLTHRVG 92
>gi|58617448|ref|YP_196647.1| DNA ligase [Ehrlichia ruminantium str. Gardel]
gi|75356732|sp|Q5FG20|DNLJ_EHRRG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|58417060|emb|CAI28173.1| DNA ligase [Ehrlichia ruminantium str. Gardel]
Length = 674
Score = 67.2 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 9/74 (12%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD----- 109
+ EA + ++ L + +H YY D+P +D YD + + + E+FP L
Sbjct: 3 DQEEAKLILDKLNEKIRYHDLLYYTQDSPEISDAEYDDLCHQRSIILEKFPSLNSYYQDY 62
Query: 110 ----EDHPWNTVGY 119
D ++ V +
Sbjct: 63 IGGDPDSRFSKVKH 76
>gi|57239421|ref|YP_180557.1| DNA ligase [Ehrlichia ruminantium str. Welgevonden]
gi|58579393|ref|YP_197605.1| DNA ligase [Ehrlichia ruminantium str. Welgevonden]
gi|81352823|sp|Q5HAI7|DNLJ_EHRRW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|57161500|emb|CAH58426.1| NAD-dependent DNA ligase [Ehrlichia ruminantium str. Welgevonden]
gi|58418019|emb|CAI27223.1| DNA ligase [Ehrlichia ruminantium str. Welgevonden]
Length = 674
Score = 67.2 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 9/74 (12%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD----- 109
+ EA + ++ L + +H YY D+P +D YD + + + E+FP L
Sbjct: 3 DQEEAKLILDKLNEKIRYHDLLYYTQDSPEISDAEYDDLCHQRSIILEKFPSLNSYYQDY 62
Query: 110 ----EDHPWNTVGY 119
D ++ V +
Sbjct: 63 IGGDPDSRFSKVKH 76
>gi|255316598|ref|ZP_05358181.1| DNA ligase, NAD-dependent [Clostridium difficile QCD-76w55]
Length = 663
Score = 67.2 bits (163), Expect = 8e-10, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+ ++ L + + H Y + D P+ +D YD++ +L L+E +PE DE+ P +
Sbjct: 3 KVEEKIRDLREEVIKHDLAYAKGD-PIISDTEYDKLYLKLVGLEELYPEYSDENSPTKRI 61
>gi|166154367|ref|YP_001654485.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis 434/Bu]
gi|166155242|ref|YP_001653497.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis
L2b/UCH-1/proctitis]
gi|301335620|ref|ZP_07223864.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis L2tet1]
gi|254781287|sp|B0B9Q4|DNLJ_CHLT2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254781289|sp|B0BBD3|DNLJ_CHLTB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|165930355|emb|CAP03841.1| NAD-dependent DNA ligase [Chlamydia trachomatis 434/Bu]
gi|165931230|emb|CAP06795.1| NAD-dependent DNA ligase [Chlamydia trachomatis
L2b/UCH-1/proctitis]
Length = 663
Score = 66.8 bits (162), Expect = 9e-10, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 22/53 (41%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L + H + YY L+ P +D YD L ++ Q PE P +G
Sbjct: 12 LCTELVEHDRRYYALNQPTISDYSYDMKMRELQEIEVQHPEWKVSWSPTMYLG 64
>gi|313888253|ref|ZP_07821924.1| DNA ligase (NAD+) [Peptoniphilus harei ACS-146-V-Sch2b]
gi|312845656|gb|EFR33046.1| DNA ligase (NAD+) [Peptoniphilus harei ACS-146-V-Sch2b]
Length = 665
Score = 66.8 bits (162), Expect = 9e-10, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ E+E L+K YY LD+PL +D YD++ ++L L+++ P VG
Sbjct: 5 IKEMENLIKEIDKLNYHYYTLDDPLLSDAEYDKLYDKLVNLEKE-SGTVLPYSPTTRVG 62
>gi|154148661|ref|YP_001406577.1| NAD-dependent DNA ligase LigA [Campylobacter hominis ATCC BAA-381]
gi|166215571|sp|A7I236|DNLJ_CAMHC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|153804670|gb|ABS51677.1| DNA ligase, NAD-dependent [Campylobacter hominis ATCC BAA-381]
Length = 645
Score = 66.8 bits (162), Expect = 9e-10, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 60 MIEVEYL--VKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
M E EYL V++ K YY DNPL TD YD + ++++ + +FP+L P N V
Sbjct: 1 MSEAEYLKAVEMLNIWAKAYYTQDNPLATDIEYDVLYKKVETFENEFPDLKVSYSPTNRV 60
Query: 118 G 118
G
Sbjct: 61 G 61
>gi|89898194|ref|YP_515304.1| NAD-dependent DNA ligase LigA [Chlamydophila felis Fe/C-56]
gi|123735917|sp|Q254X9|DNLJ_CHLFF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|89331566|dbj|BAE81159.1| DNA ligase [Chlamydophila felis Fe/C-56]
Length = 662
Score = 66.8 bits (162), Expect = 9e-10, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 25/59 (42%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L K YY L +P+ +D YD ++L +++ Q PE P +G
Sbjct: 7 REQYLALCKDIEEDDYRYYVLHDPIISDYDYDMKMQKLLSIEAQHPEWRVLWSPSMRLG 65
>gi|111115379|ref|YP_709997.1| DNA ligase [Borrelia afzelii PKo]
gi|123145685|sp|Q0SMV7|DNLJ_BORAP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|110890653|gb|ABH01821.1| DNA ligase [Borrelia afzelii PKo]
Length = 660
Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 25/62 (40%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ E+ L K+ K YY P D +YD+ RL L+ + PE D P
Sbjct: 3 SKIQQEIADLKKLIRKWDKEYYVDSLPSVEDFVYDKHILRLQELESKCPEYKTLDSPTLK 62
Query: 117 VG 118
G
Sbjct: 63 FG 64
>gi|182413875|ref|YP_001818941.1| DNA ligase, NAD-dependent [Opitutus terrae PB90-1]
gi|254778152|sp|B1ZMR3|DNLJ2_OPITP RecName: Full=DNA ligase 2; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] 2
gi|177841089|gb|ACB75341.1| DNA ligase, NAD-dependent [Opitutus terrae PB90-1]
Length = 708
Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 26/52 (50%)
Query: 53 SLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S+++ E++ +E L H Y+R P +D YD + + L L+ +F
Sbjct: 37 SVAETESLRRLELLRVEIARHDDLYFRKAQPEISDADYDALKQELRELESRF 88
>gi|256545196|ref|ZP_05472562.1| DNA ligase, NAD-dependent [Anaerococcus vaginalis ATCC 51170]
gi|256399237|gb|EEU12848.1| DNA ligase, NAD-dependent [Anaerococcus vaginalis ATCC 51170]
Length = 668
Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
I+++ L+ YY LDNP +DG YD++ + L L+++ +E P VG
Sbjct: 6 KIKIDELIDKINELNYHYYTLDNPTVSDGEYDKLYDELLNLEKK-TGYVNEFSPTQRVG 63
>gi|182419331|ref|ZP_02950583.1| DNA ligase, NAD-dependent [Clostridium butyricum 5521]
gi|237666454|ref|ZP_04526439.1| DNA ligase, NAD-dependent [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|182376662|gb|EDT74234.1| DNA ligase, NAD-dependent [Clostridium butyricum 5521]
gi|237657653|gb|EEP55208.1| DNA ligase, NAD-dependent [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 663
Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ LV+ ++ YY LD+P TD YD++ + L L+E+ P VG
Sbjct: 4 KEKIKELVEQLNNYSYKYYVLDDPSVTDKEYDKIYDELKKLEEE-TGFVLPYSPTLRVG 61
>gi|302558233|ref|ZP_07310575.1| DNA ligase, NAD-dependent [Streptomyces griseoflavus Tu4000]
gi|302475851|gb|EFL38944.1| DNA ligase, NAD-dependent [Streptomyces griseoflavus Tu4000]
Length = 731
Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 46 DKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFP 105
DK + TS+ EA + L + H+ YY D P+ +D +DR+ L+AL+E+ P
Sbjct: 4 DKQAETTSV-PAEAREKHAKLAERIEEHRFRYYVNDAPVISDADFDRLLRELEALEEEHP 62
Query: 106 ELFDEDHPWNTV 117
EL D P V
Sbjct: 63 ELRTPDSPTQKV 74
>gi|257066474|ref|YP_003152730.1| NAD-dependent DNA ligase LigA [Anaerococcus prevotii DSM 20548]
gi|256798354|gb|ACV29009.1| DNA ligase, NAD-dependent [Anaerococcus prevotii DSM 20548]
Length = 666
Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L++ + YY LD PL +DG YD++ + L L+E+ +D P VG
Sbjct: 4 REKIDKLIEKIENLNYHYYTLDEPLVSDGEYDQIYDELRKLEEE-TGYVRDDSPTQVVG 61
>gi|300933643|ref|ZP_07148899.1| NAD-dependent DNA ligase LigA [Corynebacterium resistens DSM 45100]
Length = 680
Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+ + L H++ YY D P +D +D + +L L+++ PEL P V
Sbjct: 4 SENRWQELADEVRLHRERYYYGD-PTISDADFDALLAQLRTLEDEHPELVTGPSPLTEV 61
>gi|148377548|ref|YP_001256424.1| DNA ligase [Mycoplasma agalactiae PG2]
gi|254781374|sp|A5IY71|DNLJ_MYCAP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|148291594|emb|CAL58980.1| DNA ligase [Mycoplasma agalactiae PG2]
Length = 654
Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 33/65 (50%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K EA ++ LV+ YY+L+ P +D YD+ L+ L+++ P+L + P
Sbjct: 1 MQKEEAKELIKSLVEKINQWNYEYYQLNKPSVSDLEYDKALLELEKLEKEHPDLILSNSP 60
Query: 114 WNTVG 118
+G
Sbjct: 61 TFRIG 65
>gi|32482045|gb|AAP49289.1| NAD-dependent DNA ligase [Bacillus sp. IMG-1]
Length = 107
Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 87 DGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
D YDR+ + L A++EQ+PEL D P +G
Sbjct: 1 DAEYDRLMQELIAIEEQYPELKTSDSPTQRIG 32
>gi|88607345|ref|YP_504763.1| DNA ligase, NAD-dependent [Anaplasma phagocytophilum HZ]
gi|123736456|sp|Q2GLI8|DNLJ_ANAPZ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|88598408|gb|ABD43878.1| DNA ligase, NAD-dependent [Anaplasma phagocytophilum HZ]
Length = 677
Score = 66.0 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 24/54 (44%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
+S ++ + L H Y+ D P +D YD + + L E+FPEL
Sbjct: 1 MSDNDSRRRLADLNAQLKLHDVLYHEHDAPEISDAQYDALVQEKRELLEKFPEL 54
>gi|255348508|ref|ZP_05380515.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis 70]
gi|255503049|ref|ZP_05381439.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis 70s]
gi|255506721|ref|ZP_05382360.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis D(s)2923]
gi|296434735|gb|ADH16913.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis E/150]
gi|296438453|gb|ADH20606.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis E/11023]
Length = 663
Score = 66.0 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 22/53 (41%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L + H + YY L+ P +D YD L ++ Q PE P +G
Sbjct: 12 LCTELVEHDRCYYVLNQPTISDYSYDVKMRELQEIEVQHPEWKVSWSPTMYLG 64
>gi|76788861|ref|YP_327947.1| NAD-dependent DNA ligase LigA [Chlamydia trachomatis A/HAR-13]
gi|123731251|sp|Q3KMM3|DNLJ_CHLTA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|76167391|gb|AAX50399.1| NAD-dependent DNA ligase [Chlamydia trachomatis A/HAR-13]
Length = 663
Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 22/53 (41%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L + H + YY L+ P +D YD L ++ Q PE P +G
Sbjct: 12 LCTELVEHDRCYYVLNQPTISDYSYDVKMRELQEIEVQHPEWKVSWSPTMYLG 64
>gi|86138407|ref|ZP_01056981.1| DNA ligase, NAD-dependent [Roseobacter sp. MED193]
gi|85824932|gb|EAQ45133.1| DNA ligase, NAD-dependent [Roseobacter sp. MED193]
Length = 752
Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 30/69 (43%)
Query: 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
+ LS+ +A E L + Y++ D P +D YD R L E FPEL D
Sbjct: 8 DPSGLSQEQAQAEFLELQTQLAAADQAYHQNDAPFLSDAAYDAAKRRYKVLAEAFPELKD 67
Query: 110 EDHPWNTVG 118
++VG
Sbjct: 68 IATQLDSVG 76
>gi|284037426|ref|YP_003387356.1| DNA ligase, NAD-dependent [Spirosoma linguale DSM 74]
gi|283816719|gb|ADB38557.1| DNA ligase, NAD-dependent [Spirosoma linguale DSM 74]
Length = 696
Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 24/59 (40%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L + YY+ D +D++ L AL+ Q+PE D P VG
Sbjct: 4 EEQIIDLTNRLNQYNFQYYQNSISEVDDFTFDKLLADLTALENQYPEFRQPDSPTARVG 62
>gi|32396672|gb|AAP49293.1| NAD-dependent DNA ligase [Geobacillus thermodenitrificans]
gi|32396682|gb|AAP49297.1| NAD-dependent DNA ligase [Bacillus coagulans]
Length = 107
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 87 DGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
D YDR+ + L A++EQ+PEL D P +G
Sbjct: 1 DAEYDRLMQELMAIEEQYPELKTSDSPTQRIG 32
>gi|89069525|ref|ZP_01156869.1| DNA ligase, NAD-dependent [Oceanicola granulosus HTCC2516]
gi|89044860|gb|EAR50950.1| DNA ligase, NAD-dependent [Oceanicola granulosus HTCC2516]
Length = 739
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 83 PLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
P+ D YD + R AL+ +FPEL D P VG
Sbjct: 30 PIMDDAAYDALKRRNAALEARFPELMRADSPTGQVG 65
>gi|15895931|ref|NP_349280.1| NAD-dependent DNA ligase LigA [Clostridium acetobutylicum ATCC 824]
gi|81529669|sp|Q97FQ5|DNLJ2_CLOAB RecName: Full=DNA ligase 2; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] 2
gi|15025704|gb|AAK80620.1|AE007765_2 NAD-dependent DNA ligase [Clostridium acetobutylicum ATCC 824]
Length = 669
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQ----FPELFDED 111
K ++ ++ L++ + YY LDNP+ D YD+ + L L+E+ +P
Sbjct: 4 KESNILRMQELIEELNKYSYSYYVLDNPIVADKEYDKRYDELVELEEKTGITYP-----Y 58
Query: 112 HPWNTVG 118
P N VG
Sbjct: 59 SPTNRVG 65
>gi|325510083|gb|ADZ21719.1| NAD-dependent DNA ligase LigA [Clostridium acetobutylicum EA 2018]
Length = 669
Score = 65.3 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQ----FPELFDED 111
K ++ ++ L++ + YY LDNP+ D YD+ + L L+E+ +P
Sbjct: 4 KESNILRMQELIEELNKYSYSYYVLDNPIVADKEYDKRYDELVELEEKTGITYP-----Y 58
Query: 112 HPWNTVG 118
P N VG
Sbjct: 59 SPTNRVG 65
>gi|160947381|ref|ZP_02094548.1| hypothetical protein PEPMIC_01315 [Parvimonas micra ATCC 33270]
gi|158446515|gb|EDP23510.1| hypothetical protein PEPMIC_01315 [Parvimonas micra ATCC 33270]
Length = 662
Score = 65.3 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
M +++ +V+ YY LD P +D YD++ + L L+++ + + P VG
Sbjct: 1 MDKMKEIVEKLNLWAYQYYTLDEPSVSDAEYDKLYDELLKLEKE-TGVILPNSPTQRVG 58
>gi|294786747|ref|ZP_06752001.1| DNA ligase, NAD-dependent [Parascardovia denticolens F0305]
gi|315226368|ref|ZP_07868156.1| DNA ligase [Parascardovia denticolens DSM 10105]
gi|294485580|gb|EFG33214.1| DNA ligase, NAD-dependent [Parascardovia denticolens F0305]
gi|315120500|gb|EFT83632.1| DNA ligase [Parascardovia denticolens DSM 10105]
Length = 868
Score = 65.3 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 29/69 (42%)
Query: 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
+ +L A + Q YY D+P+ +D YD+ L L+ QFP L +
Sbjct: 50 DLVALPVDLAARLWAKVASWVEDDQIAYYVNDSPVSSDSAYDQRMLTLQRLEAQFPALDN 109
Query: 110 EDHPWNTVG 118
P + VG
Sbjct: 110 PQSPTHRVG 118
>gi|57241999|ref|ZP_00369939.1| DNA ligase, NAD-dependent [Campylobacter upsaliensis RM3195]
gi|57017191|gb|EAL53972.1| DNA ligase, NAD-dependent [Campylobacter upsaliensis RM3195]
Length = 644
Score = 65.3 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 64 EYLVKIALH--HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
EYL K+AL + YY D PL +D YDR+ + +++ P L D P +
Sbjct: 3 EYLKKVALANLWMRAYYEEDEPLASDEEYDRLIREIKVFEKENPSLISPDSPTQKI 58
>gi|168179082|ref|ZP_02613746.1| DNA ligase, NAD-dependent [Clostridium botulinum NCTC 2916]
gi|182670115|gb|EDT82091.1| DNA ligase, NAD-dependent [Clostridium botulinum NCTC 2916]
Length = 664
Score = 65.3 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ LV+ + YY LDNP +D YD + L L+++ E+ P VG
Sbjct: 6 EKMKELVEELNQYAYEYYVLDNPSISDKEYDLKYDELVILEKK-TEVTLPYSPTQRVG 62
>gi|226950696|ref|YP_002805787.1| DNA ligase, NAD-dependent [Clostridium botulinum A2 str. Kyoto]
gi|254781293|sp|C1FLS8|DNLJ_CLOBJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|226842063|gb|ACO84729.1| DNA ligase, NAD-dependent [Clostridium botulinum A2 str. Kyoto]
Length = 664
Score = 64.9 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ LV+ + YY LDNP +D YD + L L+++ E+ P VG
Sbjct: 6 EKMKELVEELNQYAYEYYVLDNPSISDKEYDLKYDELVILEKK-TEVTLPYSPTQRVG 62
>gi|167041226|gb|ABZ05983.1| putative NAD-dependent DNA ligase adenylation domain protein
[uncultured marine microorganism HF4000_001N02]
Length = 727
Score = 64.9 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
Query: 52 TSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
+ +G +E L ++ HH YY P+ TD YD + + L L P+L
Sbjct: 4 EGIEEGAQSARIEELAQLLAHHSDLYYNEAAPVITDAEYDLLFDELKRLDPTHPQL---- 59
Query: 112 HPWNTVG 118
+ VG
Sbjct: 60 ---DRVG 63
>gi|88608555|ref|YP_506384.1| DNA ligase, NAD-dependent [Neorickettsia sennetsu str. Miyayama]
gi|123736355|sp|Q2GDR2|DNLJ_NEOSM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|88600724|gb|ABD46192.1| DNA ligase, NAD-dependent [Neorickettsia sennetsu str. Miyayama]
Length = 670
Score = 64.9 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 27/50 (54%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
EA E++ L + L H K YY+ D+P TD YD + +R L E P L
Sbjct: 2 EAKKEIQELYEKLLRHNKKYYQDDSPEITDAEYDSIKDRYLKLLEANPSL 51
>gi|322807581|emb|CBZ05156.1| DNA ligase [Clostridium botulinum H04402 065]
Length = 664
Score = 64.9 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ LV+ + YY LDNP +D YD + L L+++ E+ P VG
Sbjct: 6 EKMKELVEELNQYAYEYYVLDNPSISDKEYDLKYDELVILEKK-TEVTLPYSPTQRVG 62
>gi|170756080|ref|YP_001782894.1| NAD-dependent DNA ligase LigA [Clostridium botulinum B1 str. Okra]
gi|254781294|sp|B1ING1|DNLJ_CLOBK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|169121292|gb|ACA45128.1| DNA ligase, NAD-dependent [Clostridium botulinum B1 str. Okra]
Length = 664
Score = 64.9 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ LV+ + YY LDNP +D YD + L L+++ E+ P VG
Sbjct: 6 EKMKELVEELNQYAYEYYVLDNPSISDKEYDLKYDELVILEKK-TEVTLPYSPTQRVG 62
>gi|153940260|ref|YP_001392616.1| NAD-dependent DNA ligase LigA [Clostridium botulinum F str.
Langeland]
gi|166215578|sp|A7GIK6|DNLJ_CLOBL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|152936156|gb|ABS41654.1| DNA ligase, NAD-dependent [Clostridium botulinum F str. Langeland]
gi|295320603|gb|ADG00981.1| DNA ligase, NAD-dependent [Clostridium botulinum F str. 230613]
Length = 664
Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ LV+ + YY LDNP +D YD + L L+++ E+ P VG
Sbjct: 6 EKMKELVEELNQYAYEYYVLDNPSISDKEYDLKYDELVILEKK-TEVTLPYSPTQRVG 62
>gi|302668858|ref|YP_003832683.1| NAD-dependent DNA ligase LigA2 [Butyrivibrio proteoclasticus B316]
gi|302397198|gb|ADL36101.1| NAD-dependent DNA ligase LigA2 [Butyrivibrio proteoclasticus B316]
Length = 745
Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 34/74 (45%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
+++ + T+L + + + E L + + YY D P +D YD + +L A +++
Sbjct: 1 MNEIELNTALGEQLSKKDYEKLKNKLMDLARAYYDDDAPKVSDHEYDMLMVQLKACEKKN 60
Query: 105 PELFDEDHPWNTVG 118
P +D +G
Sbjct: 61 PSWVTDDSISQVIG 74
>gi|32396667|gb|AAP49291.1| NAD-dependent DNA ligase [Bacillus sp. IMG-2]
Length = 107
Score = 64.5 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 87 DGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
D YDR L L+E++PEL D P VG
Sbjct: 1 DAEYDRFMRELIELEEKYPELKTPDSPSQRVG 32
>gi|148381215|ref|YP_001255756.1| DNA ligase, NAD-dependent [Clostridium botulinum A str. ATCC 3502]
gi|153931904|ref|YP_001385590.1| NAD-dependent DNA ligase LigA [Clostridium botulinum A str. ATCC
19397]
gi|153935840|ref|YP_001388996.1| NAD-dependent DNA ligase LigA [Clostridium botulinum A str. Hall]
gi|166215576|sp|A7FYL7|DNLJ_CLOB1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|166215577|sp|A5I6Z7|DNLJ_CLOBH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|148290699|emb|CAL84829.1| DNA ligase [Clostridium botulinum A str. ATCC 3502]
gi|152927948|gb|ABS33448.1| DNA ligase, NAD-dependent [Clostridium botulinum A str. ATCC 19397]
gi|152931754|gb|ABS37253.1| DNA ligase, NAD-dependent [Clostridium botulinum A str. Hall]
Length = 664
Score = 64.5 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ LV+ + YY LDNP +D YD + L L+++ E+ P VG
Sbjct: 6 EKMKELVEELNQYAYEYYVLDNPSISDKEYDLKYDELVILEKK-TEVTLPYSPTQRVG 62
>gi|212696137|ref|ZP_03304265.1| hypothetical protein ANHYDRO_00673 [Anaerococcus hydrogenalis DSM
7454]
gi|212676766|gb|EEB36373.1| hypothetical protein ANHYDRO_00673 [Anaerococcus hydrogenalis DSM
7454]
Length = 668
Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
I+++ L+ YY LD P+ +DG YD++ + L L+ + P VG
Sbjct: 6 KIKIDELIDKINELNYHYYTLDEPIVSDGEYDKLYDELRELENS-TGYINAFSPTQRVG 63
>gi|297588239|ref|ZP_06946882.1| DNA ligase (NAD(+)) [Finegoldia magna ATCC 53516]
gi|297573612|gb|EFH92333.1| DNA ligase (NAD(+)) [Finegoldia magna ATCC 53516]
Length = 662
Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E ++YLV I + YY LD+PL D YD + + L L+++ + + P N +
Sbjct: 2 EKKDRIKYLVDILNKYAYHYYTLDDPLIEDSEYDVLYDELVNLEKE-TGIVLPNSPTNRI 60
Query: 118 G 118
G
Sbjct: 61 G 61
>gi|291320206|ref|YP_003515467.1| DNA ligase [Mycoplasma agalactiae]
gi|290752538|emb|CBH40510.1| DNA ligase [Mycoplasma agalactiae]
Length = 654
Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 33/65 (50%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K +A ++ LV+ YY+L+ P +D YD+ L+ L+++ P+L + P
Sbjct: 1 MQKEKAKELIKSLVETINQWNYEYYQLNKPSVSDLEYDKALLELEKLEKEHPDLILNNSP 60
Query: 114 WNTVG 118
+G
Sbjct: 61 TFRIG 65
>gi|170761523|ref|YP_001788587.1| NAD-dependent DNA ligase LigA [Clostridium botulinum A3 str. Loch
Maree]
gi|254781295|sp|B1L1H3|DNLJ_CLOBM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|169408512|gb|ACA56923.1| DNA ligase, NAD-dependent [Clostridium botulinum A3 str. Loch
Maree]
Length = 664
Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ LV+ + YY LDNP +D YD + L L+++ E+ P VG
Sbjct: 6 EKMKELVEELNQYAYEYYVLDNPSISDKEYDLKYDELVILEKK-TEVTLPYSPTQRVG 62
>gi|297156986|gb|ADI06698.1| NAD-dependent DNA ligase LigA [Streptomyces bingchenggensis BCW-1]
Length = 728
Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 31/62 (50%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
EA + L + H+ YY D P+ +D +DR+ L+AL+E++ EL D P
Sbjct: 10 PAEARDKHAILAEQVEEHRFRYYVKDAPIVSDAEFDRLLRELEALEEEYTELRTPDSPTQ 69
Query: 116 TV 117
V
Sbjct: 70 KV 71
>gi|302382738|ref|YP_003818561.1| DNA ligase, NAD-dependent [Brevundimonas subvibrioides ATCC 15264]
gi|302193366|gb|ADL00938.1| DNA ligase, NAD-dependent [Brevundimonas subvibrioides ATCC 15264]
Length = 777
Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 83 PLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
P +D YD + R A++ +FP L D P VG
Sbjct: 42 PTVSDADYDAMKARNLAIETRFPALVRSDSPSLKVG 77
>gi|317062114|ref|ZP_07926599.1| NAD-dependent DNA ligase [Fusobacterium ulcerans ATCC 49185]
gi|313687790|gb|EFS24625.1| NAD-dependent DNA ligase [Fusobacterium ulcerans ATCC 49185]
Length = 665
Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L + ++YY + L +D YD + L L+E++PE E P VG
Sbjct: 1 MRADLLKYNQYYYTNNESLISDVEYDMLMNELKELEEKYPEYKSEASPTVIVG 53
>gi|325068288|ref|ZP_08126961.1| DNA ligase (NAD(+)) [Actinomyces oris K20]
Length = 818
Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 32/87 (36%), Gaps = 5/87 (5%)
Query: 36 PNKRALESWLDKAKKVTSLS--KGEAMIEVEYLVKIALHHQKWYY-RLDNPL-FTDGLYD 91
P AL S + LS A LV+ + YY +D +D YD
Sbjct: 12 PAP-ALSSARSDQRGPVDLSAIPSAARERWSELVRDIEAARDAYYNAIDAESPLSDADYD 70
Query: 92 RVSERLDALQEQFPELFDEDHPWNTVG 118
+ L+ L+ +P L P +VG
Sbjct: 71 LLYRELEGLEAAYPLLARAGSPTRSVG 97
>gi|225389801|ref|ZP_03759525.1| hypothetical protein CLOSTASPAR_03549 [Clostridium asparagiforme
DSM 15981]
gi|225044136|gb|EEG54382.1| hypothetical protein CLOSTASPAR_03549 [Clostridium asparagiforme
DSM 15981]
Length = 673
Score = 64.1 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
E + + + L ++ YY L+ P +D +YDR+ E L L+ Q + + P +T
Sbjct: 3 QELIRKQQDLTARLNRYRHEYYNLNAPSISDAVYDRLFEELQDLERQ-TGIQMANSPTST 61
Query: 117 VGY 119
VGY
Sbjct: 62 VGY 64
>gi|321309600|ref|YP_004191929.1| DNA ligase [Mycoplasma haemofelis str. Langford 1]
gi|319801444|emb|CBY92090.1| DNA ligase [Mycoplasma haemofelis str. Langford 1]
Length = 662
Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
+E L K ++ YY D P +D +YD L L+ ++PE ED P N VG+
Sbjct: 7 IENLRKELKDLEEAYYAGD-PKESDEVYDFKLRTLLNLEHKYPEYKTEDSPSNRVGF 62
>gi|32307199|gb|AAP79092.1| NAD-dependent DNA ligase [Bacillus catenulatus]
Length = 107
Score = 64.1 bits (155), Expect = 7e-09, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 87 DGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
D YD + + L A++EQ+PEL D P +G
Sbjct: 1 DAEYDLLMQELIAIEEQYPELKTSDSPTQRIG 32
>gi|124006376|ref|ZP_01691210.1| DNA ligase, NAD-dependent [Microscilla marina ATCC 23134]
gi|123988033|gb|EAY27704.1| DNA ligase, NAD-dependent [Microscilla marina ATCC 23134]
Length = 691
Score = 63.7 bits (154), Expect = 7e-09, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 33/65 (50%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ EA + L K H+ YY+ + TD +D++ E L L+E+FP+ +D P
Sbjct: 1 MTNQEAQERIRELSKDLHHYNYMYYQKHVSVVTDYKFDKLLEELIDLEEKFPQFKKDDSP 60
Query: 114 WNTVG 118
VG
Sbjct: 61 SQRVG 65
>gi|81390835|sp|Q6AEE5|DNLJ_LEIXX RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|50951550|gb|AAT89251.1| DNA ligase [Leifsonia xyli subsp. xyli str. CTCB07]
Length = 747
Score = 63.7 bits (154), Expect = 7e-09, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 32/62 (51%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+A E + L L + YY LD L +D YDR+ RL+ L+ PEL +D P T
Sbjct: 3 ADARAEAQGLTTRILELRDAYYELDTVLVSDEEYDRMLRRLEELERLHPELQSQDSPTQT 62
Query: 117 VG 118
VG
Sbjct: 63 VG 64
>gi|325846528|ref|ZP_08169443.1| DNA ligase (NAD+) [Anaerococcus hydrogenalis ACS-025-V-Sch4]
gi|325481286|gb|EGC84327.1| DNA ligase (NAD+) [Anaerococcus hydrogenalis ACS-025-V-Sch4]
Length = 668
Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
I+++ L+ YY LD P+ +DG YD++ + L L+ + P VG
Sbjct: 6 KIKIDELIDKINELNYHYYTLDEPMVSDGEYDKLYDELRELENS-TGYINAFSPTQRVG 63
>gi|227499502|ref|ZP_03929609.1| DNA ligase (NAD(+)) [Anaerococcus tetradius ATCC 35098]
gi|227218381|gb|EEI83632.1| DNA ligase (NAD(+)) [Anaerococcus tetradius ATCC 35098]
Length = 666
Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E+ L++ YY LD PL +DG YD++ ++L L+ + + ++ P VG
Sbjct: 4 REEISQLIEKINELNYHYYTLDEPLVSDGEYDKLYDKLKKLENE-SGIVLDNSPTQIVG 61
>gi|161760708|ref|YP_062356.2| NAD-dependent DNA ligase LigA [Leifsonia xyli subsp. xyli str.
CTCB07]
Length = 755
Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 32/62 (51%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+A E + L L + YY LD L +D YDR+ RL+ L+ PEL +D P T
Sbjct: 11 ADARAEAQGLTTRILELRDAYYELDTVLVSDEEYDRMLRRLEELERLHPELQSQDSPTQT 70
Query: 117 VG 118
VG
Sbjct: 71 VG 72
>gi|315637028|ref|ZP_07892251.1| NAD-dependent DNA ligase LigA [Arcobacter butzleri JV22]
gi|315478564|gb|EFU69274.1| NAD-dependent DNA ligase LigA [Arcobacter butzleri JV22]
Length = 648
Score = 63.7 bits (154), Expect = 9e-09, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++K E + +E L+ YY DNP+ TD YD+++ A +++ P+L + P
Sbjct: 1 MTKEEYDLNIEKLIS----WANAYYVFDNPIATDEEYDKLARLCLAYEQENPKLSHPNSP 56
Query: 114 WNTVG 118
VG
Sbjct: 57 NKRVG 61
>gi|241668131|ref|ZP_04755709.1| DNA ligase (NAD(+)) [Francisella philomiragia subsp. philomiragia
ATCC 25015]
gi|254876666|ref|ZP_05249376.1| DNA ligase [Francisella philomiragia subsp. philomiragia ATCC
25015]
gi|254842687|gb|EET21101.1| DNA ligase [Francisella philomiragia subsp. philomiragia ATCC
25015]
Length = 678
Score = 63.7 bits (154), Expect = 9e-09, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 32/71 (45%)
Query: 48 AKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
+ +L+K + ++ L + Y+ +D P+ TD YD++ L L + P+L
Sbjct: 8 STDYKTLTKAQLKSYIDDLAEYLGEQSYLYHTIDKPVITDSDYDKLFRLLQDLVDDNPQL 67
Query: 108 FDEDHPWNTVG 118
+ + VG
Sbjct: 68 KPSNSVLDRVG 78
>gi|157737313|ref|YP_001489996.1| NAD-dependent DNA ligase LigA [Arcobacter butzleri RM4018]
gi|166215390|sp|A8ETQ3|DNLJ_ARCB4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|157699167|gb|ABV67327.1| DNA ligase [Arcobacter butzleri RM4018]
Length = 648
Score = 63.7 bits (154), Expect = 9e-09, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++K E + +E L+ YY DNP+ TD YD+++ A +++ P+L + P
Sbjct: 1 MTKEEYDLNIEKLIS----WANAYYVFDNPIATDEEYDKLARLCLAYEQENPKLSHPNSP 56
Query: 114 WNTVG 118
VG
Sbjct: 57 NKRVG 61
>gi|269959115|ref|YP_003328904.1| NAD-dependent DNA ligase [Anaplasma centrale str. Israel]
gi|269848946|gb|ACZ49590.1| NAD-dependent DNA ligase [Anaplasma centrale str. Israel]
Length = 673
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 28/62 (45%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+A + L HH Y+ LD P TD YD + + L ++FP++ D +
Sbjct: 3 EQARRRLAGLNAKLRHHDVLYHGLDAPEVTDHQYDLLVQEKKRLLDEFPDIRQYDDYADV 62
Query: 117 VG 118
VG
Sbjct: 63 VG 64
>gi|296273134|ref|YP_003655765.1| DNA ligase, NAD-dependent [Arcobacter nitrofigilis DSM 7299]
gi|296097308|gb|ADG93258.1| DNA ligase, NAD-dependent [Arcobacter nitrofigilis DSM 7299]
Length = 648
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+++ E ++ L+ YY DNP +D YD++S A +++ P L + P
Sbjct: 1 MTQNEYNEKINILIS----WAIAYYVEDNPQASDEEYDKLSRECLAYEQENPSLSHPNSP 56
Query: 114 WNTVG 118
VG
Sbjct: 57 NKRVG 61
>gi|257460489|ref|ZP_05625590.1| DNA ligase, NAD-dependent [Campylobacter gracilis RM3268]
gi|257441820|gb|EEV16962.1| DNA ligase, NAD-dependent [Campylobacter gracilis RM3268]
Length = 668
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 24/57 (42%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E V + YY D P+ +D YD + + + +EQ PEL P +G
Sbjct: 5 EYRSAVDTLNAWARAYYTDDRPIASDEEYDELYSQAEKFEEQNPELALSYSPTRRIG 61
>gi|222823679|ref|YP_002575253.1| DNA ligase, NAD-dependent [Campylobacter lari RM2100]
gi|254781279|sp|B9KG17|DNLJ_CAMLR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|222538901|gb|ACM64002.1| DNA ligase, NAD-dependent [Campylobacter lari RM2100]
Length = 651
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ E + +V+ L K + YY D PL +D YD++ L + + + +D P
Sbjct: 1 MTYQEYLEKVK-LAKE---WMRAYYEDDEPLASDEEYDKLIRELKEFEALYKDKISKDSP 56
Query: 114 WNTV 117
+
Sbjct: 57 TQNI 60
>gi|303234054|ref|ZP_07320703.1| DNA ligase (NAD+) [Finegoldia magna BVS033A4]
gi|302494979|gb|EFL54736.1| DNA ligase (NAD+) [Finegoldia magna BVS033A4]
Length = 662
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E ++YLV I + YY LD+PL D YD + + L L+++ + + P N +
Sbjct: 2 EKQDRIKYLVDILNKYAYHYYTLDDPLIADSEYDVLYDELVNLEKE-TGIVLPNSPTNRI 60
Query: 118 G 118
G
Sbjct: 61 G 61
>gi|154503603|ref|ZP_02040663.1| hypothetical protein RUMGNA_01427 [Ruminococcus gnavus ATCC 29149]
gi|260589901|ref|ZP_05855814.1| DNA ligase, NAD-dependent [Blautia hansenii DSM 20583]
gi|153795703|gb|EDN78123.1| hypothetical protein RUMGNA_01427 [Ruminococcus gnavus ATCC 29149]
gi|260539708|gb|EEX20277.1| DNA ligase, NAD-dependent [Blautia hansenii DSM 20583]
gi|291547890|emb|CBL20998.1| DNA ligase, NAD-dependent [Ruminococcus sp. SR1/5]
Length = 671
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
+ +++ LV + YY ++P +D YDR+ + L L++Q + P TVGY
Sbjct: 10 VEKIKQLVDYLNLQRNAYYNENSPNISDAEYDRIFDELVELEKQ-TGFILSNSPTQTVGY 68
>gi|302380539|ref|ZP_07269004.1| DNA ligase (NAD+) [Finegoldia magna ACS-171-V-Col3]
gi|302311482|gb|EFK93498.1| DNA ligase (NAD+) [Finegoldia magna ACS-171-V-Col3]
Length = 662
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E ++YLV I + YY LD+PL D YD + + L L+++ + + P N +
Sbjct: 2 EKQDRMKYLVDILNKYAYHYYTLDDPLIADSEYDVLYDELVNLEKE-TGIVLPNSPTNRI 60
Query: 118 G 118
G
Sbjct: 61 G 61
>gi|255526475|ref|ZP_05393386.1| DNA ligase, NAD-dependent [Clostridium carboxidivorans P7]
gi|296184848|ref|ZP_06853259.1| DNA ligase, NAD-dependent [Clostridium carboxidivorans P7]
gi|255509857|gb|EET86186.1| DNA ligase, NAD-dependent [Clostridium carboxidivorans P7]
gi|296050630|gb|EFG90053.1| DNA ligase, NAD-dependent [Clostridium carboxidivorans P7]
Length = 669
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++E LV+ + + YY LDNP +D YD + L L+++ + P VG
Sbjct: 8 KEQIEKLVEELNKYAQEYYLLDNPSVSDKEYDLRYDELLKLEKE-TGIILPYSPTQRVG 65
>gi|169824266|ref|YP_001691877.1| NAD-dependent DNA ligase LigA [Finegoldia magna ATCC 29328]
gi|254781333|sp|B0RZW0|DNLJ_FINM2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|167831071|dbj|BAG07987.1| NAD-dependent DNA ligase [Finegoldia magna ATCC 29328]
Length = 662
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E ++YLV I + YY LD+PL D YD + + L L+++ + + P N +
Sbjct: 2 EKQDRIKYLVDILNKYAYHYYTLDDPLIADSEYDVLYDELVNLEKE-TGIVLPNSPTNRI 60
Query: 118 G 118
G
Sbjct: 61 G 61
>gi|57168176|ref|ZP_00367315.1| DNA ligase (NAD) Cj0586 [Campylobacter coli RM2228]
gi|57020550|gb|EAL57219.1| DNA ligase (NAD) Cj0586 [Campylobacter coli RM2228]
Length = 467
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++K E + +V +A + YY D PL +D YD + L +EQ + +D P
Sbjct: 1 MTKKEYLEKVA----LAASWMRAYYEKDEPLASDEEYDALIRELRVFEEQNKDEISKDSP 56
Query: 114 WNTV 117
+
Sbjct: 57 TQKI 60
>gi|29840375|ref|NP_829481.1| NAD-dependent DNA ligase LigA [Chlamydophila caviae GPIC]
gi|75539575|sp|Q822R2|DNLJ_CHLCV RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|29834724|gb|AAP05359.1| DNA ligase [Chlamydophila caviae GPIC]
Length = 662
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 23/53 (43%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L K YY L N + +D YD ++L A++ Q PE P +G
Sbjct: 13 LCKELEKDDYCYYVLHNAVISDYDYDMKMQKLLAIEAQHPEWKVLWSPSMRLG 65
>gi|222474841|ref|YP_002563256.1| DNA ligase (ligA) [Anaplasma marginale str. Florida]
gi|255003944|ref|ZP_05278745.1| DNA ligase (ligA) [Anaplasma marginale str. Virginia]
gi|254781539|sp|B9KHN8|DNLJ_ANAMF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|222418977|gb|ACM49000.1| DNA ligase (ligA) [Anaplasma marginale str. Florida]
Length = 673
Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 28/62 (45%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+A + L HH Y+ LD P TD YD + + L ++FP++ D +
Sbjct: 3 EQARRRLAGLNAKLRHHDMLYHGLDAPEVTDHQYDLLVQEKKRLLDEFPDIRQYDDYADV 62
Query: 117 VG 118
VG
Sbjct: 63 VG 64
>gi|254796855|ref|YP_003081692.1| DNA ligase, NAD-dependent [Neorickettsia risticii str. Illinois]
gi|254590064|gb|ACT69426.1| DNA ligase, NAD-dependent [Neorickettsia risticii str. Illinois]
Length = 670
Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
+A E++ L + L H K YY+ D+P TD YD + R L E P L
Sbjct: 2 KAKKEIQELYEKLLRHNKKYYQDDSPEITDAEYDSIKGRYLKLLEANPSL 51
>gi|325119805|emb|CBZ55358.1| putative NAD-dependent DNA ligase OB-fold domain containing protein
[Neospora caninum Liverpool]
Length = 1981
Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 29/68 (42%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
V+ L E LV+ + Y+ + D +YD++ RL L+E P L
Sbjct: 276 VSPLPDPSEKEEYHKLVETLRACDRAYHVGAHSPLPDAVYDQLKARLLHLEEVHPSLVTP 335
Query: 111 DHPWNTVG 118
+ P + VG
Sbjct: 336 ESPSSYVG 343
>gi|305431677|ref|ZP_07400846.1| NAD-dependent DNA ligase LigA [Campylobacter coli JV20]
gi|304445272|gb|EFM37916.1| NAD-dependent DNA ligase LigA [Campylobacter coli JV20]
Length = 647
Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++K E + +V +A + YY D PL +D YD + L +EQ + +D P
Sbjct: 1 MTKKEYLEKVA----LAASWMRAYYEKDEPLASDEEYDALIRELRVFEEQNKDEISKDSP 56
Query: 114 WNTV 117
+
Sbjct: 57 TQKI 60
>gi|167627564|ref|YP_001678064.1| DNA ligase (NAD(+)) [Francisella philomiragia subsp. philomiragia
ATCC 25017]
gi|190359258|sp|B0TY02|DNLJ_FRAP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|167597565|gb|ABZ87563.1| DNA ligase (NAD(+)) [Francisella philomiragia subsp. philomiragia
ATCC 25017]
Length = 678
Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 32/71 (45%)
Query: 48 AKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
+ +L+K + ++ L + Y+ +D P+ TD YD++ L L + P+L
Sbjct: 8 SIDYKTLTKAQLKSYIDDLAEYLGEQSYLYHTIDKPVITDSDYDKLFRLLQDLVDDNPQL 67
Query: 108 FDEDHPWNTVG 118
+ + VG
Sbjct: 68 KPSNSVLDRVG 78
>gi|168183572|ref|ZP_02618236.1| DNA ligase (NAD(+)) [Clostridium botulinum Bf]
gi|237796711|ref|YP_002864263.1| NAD-dependent DNA ligase LigA [Clostridium botulinum Ba4 str. 657]
gi|254781290|sp|C3KUA1|DNLJ_CLOB6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|182673387|gb|EDT85348.1| DNA ligase (NAD(+)) [Clostridium botulinum Bf]
gi|229263356|gb|ACQ54389.1| DNA ligase, NAD-dependent [Clostridium botulinum Ba4 str. 657]
Length = 664
Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ LV+ + YY LDNP +D YD + L L+++ ++ P VG
Sbjct: 6 EKMKKLVEELNQYAYEYYVLDNPSISDKEYDLKYDELVILEKE-TQVTLPYSPTQRVG 62
>gi|254517673|ref|ZP_05129729.1| NAD-dependent DNA ligase LigA [Clostridium sp. 7_2_43FAA]
gi|226911422|gb|EEH96623.1| NAD-dependent DNA ligase LigA [Clostridium sp. 7_2_43FAA]
Length = 663
Score = 62.9 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+E LV + YY LDNP +D YD+ + L L+E+ P VG
Sbjct: 4 KQRIEELVNELNRYAYEYYSLDNPSVSDKDYDKKYDELKKLEEE-TNYVLPYSPTLRVG 61
>gi|154498647|ref|ZP_02037025.1| hypothetical protein BACCAP_02637 [Bacteroides capillosus ATCC
29799]
gi|150272386|gb|EDM99580.1| hypothetical protein BACCAP_02637 [Bacteroides capillosus ATCC
29799]
Length = 656
Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+ + + L++ + YY+ D P+ D YDR+ + L AL+ + P V
Sbjct: 2 QNLERMRELIQTIKEADEAYYKYDAPIMADLDYDRLYDELAALERE-TGTILSSSPTQRV 60
>gi|189184847|ref|YP_001938632.1| NAD-dependent DNA ligase LigA [Orientia tsutsugamushi str. Ikeda]
gi|254781383|sp|B3CVK1|DNLJ_ORITI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|189181618|dbj|BAG41398.1| DNA ligase [Orientia tsutsugamushi str. Ikeda]
Length = 699
Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 31/70 (44%)
Query: 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
+ L+ A V++L + + YY +NPL TD YD + + + +FP L
Sbjct: 10 NIEQLTSDHAKKIVDFLALELQKYDQAYYSDNNPLVTDAQYDVLKNLNNKIVAKFPHLAL 69
Query: 110 EDHPWNTVGY 119
+ VG+
Sbjct: 70 VNDHSKKVGF 79
>gi|148284934|ref|YP_001249024.1| NAD-dependent DNA ligase LigA [Orientia tsutsugamushi str. Boryong]
gi|166216222|sp|A5CEY0|DNLJ_ORITB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|146740373|emb|CAM80812.1| NAD-dependent DNA ligase [Orientia tsutsugamushi str. Boryong]
Length = 698
Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 31/70 (44%)
Query: 50 KVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
+ L+ A V++L + + YY +NPL TD YD + + + +FP L
Sbjct: 10 NIEQLTSDHAKKIVDFLALELQKYDQAYYSDNNPLVTDAQYDVLKNLNNKIVAKFPHLAL 69
Query: 110 EDHPWNTVGY 119
+ VG+
Sbjct: 70 VNDHSKKVGF 79
>gi|205355436|ref|ZP_03222207.1| DNA ligase [Campylobacter jejuni subsp. jejuni CG8421]
gi|205346670|gb|EDZ33302.1| DNA ligase [Campylobacter jejuni subsp. jejuni CG8421]
Length = 647
Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K E + +V +A + YY D PL +D YD + L A +EQ + +D P
Sbjct: 1 MKKEEYLEKVA----LANLWMRAYYEKDEPLASDEEYDALIRELRAFEEQNKDEISKDSP 56
Query: 114 WNTV 117
+
Sbjct: 57 TQKI 60
>gi|307747505|gb|ADN90775.1| DNA ligase [Campylobacter jejuni subsp. jejuni M1]
Length = 647
Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K E + +V +A + YY D PL +D YD + L A +EQ + +D P
Sbjct: 1 MKKEEYLEKVA----LANLWMRAYYEKDEPLASDEEYDALIRELRAFEEQNKDEISKDSP 56
Query: 114 WNTV 117
+
Sbjct: 57 TQKI 60
>gi|78187553|ref|YP_375596.1| DNA ligase (NAD+) [Chlorobium luteolum DSM 273]
gi|123743616|sp|Q3B278|DNLJ_PELLD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|78167455|gb|ABB24553.1| DNA ligase (NAD+) [Chlorobium luteolum DSM 273]
Length = 677
Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 22/46 (47%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
H YY P +D +DR+ RL L+ + PEL D P VG
Sbjct: 24 HNHLYYVEAKPEISDYDFDRLLLRLIELEREHPELVTPDSPTGRVG 69
>gi|157414868|ref|YP_001482124.1| NAD-dependent DNA ligase LigA [Campylobacter jejuni subsp. jejuni
81116]
gi|190359240|sp|A8FL10|DNLJ_CAMJ8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|157385832|gb|ABV52147.1| DNA ligase [Campylobacter jejuni subsp. jejuni 81116]
gi|315931784|gb|EFV10739.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni 327]
Length = 647
Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K E + +V +A + YY D PL +D YD + L A +EQ + +D P
Sbjct: 1 MKKEEYLEKVA----LANLWMRAYYEKDEPLASDEEYDALIRELRAFEEQNKDEISKDSP 56
Query: 114 WNTV 117
+
Sbjct: 57 TQKI 60
>gi|254994698|ref|ZP_05276888.1| DNA ligase [Anaplasma marginale str. Mississippi]
Length = 624
Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 28/62 (45%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+A + L HH Y+ LD P TD YD + + L ++FP++ D +
Sbjct: 3 EQARRRLAGLNAKLRHHDVLYHGLDAPEVTDHQYDLLVQEKKRLLDEFPDISQYDDYADV 62
Query: 117 VG 118
VG
Sbjct: 63 VG 64
>gi|212550985|ref|YP_002309302.1| NAD-dependent DNA ligase [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
gi|254781545|sp|B6YRR9|DNLJ_AZOPC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|212549223|dbj|BAG83891.1| NAD-dependent DNA ligase [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
Length = 663
Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 30/60 (50%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L + + YY + P+ +D +D+ + L+ L+ Q+PE +D P +G
Sbjct: 3 IKQKIDNLRQEIDNWNYRYYVIYQPIVSDFEFDKKLKELEKLEAQYPEYYDYYSPTQRIG 62
>gi|56416472|ref|YP_153546.1| DNA ligase [Anaplasma marginale str. St. Maries]
gi|81359291|sp|Q5PBN8|DNLJ_ANAMM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|56387704|gb|AAV86291.1| DNA ligase [Anaplasma marginale str. St. Maries]
Length = 673
Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 28/62 (45%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+A + L HH Y+ LD P TD YD + + L ++FP++ D +
Sbjct: 3 EQARRRLAGLNAKLRHHDVLYHGLDAPEVTDHQYDLLVQEKKRLLDEFPDISQYDDYADV 62
Query: 117 VG 118
VG
Sbjct: 63 VG 64
>gi|326774207|ref|ZP_08233489.1| DNA ligase, NAD-dependent [Actinomyces viscosus C505]
gi|326636346|gb|EGE37250.1| DNA ligase, NAD-dependent [Actinomyces viscosus C505]
Length = 818
Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 28/76 (36%), Gaps = 3/76 (3%)
Query: 46 DKAKKVT-SLSKGEAMIEVEYLVKIALHHQKWYY-RLDNPL-FTDGLYDRVSERLDALQE 102
D+ V S A LV+ + YY +D +D YD + L+ L+
Sbjct: 22 DQRGPVDLSAIPTAARERWSELVRDIEAARDAYYNAIDAESPLSDADYDTLYRELEGLEA 81
Query: 103 QFPELFDEDHPWNTVG 118
P L P +VG
Sbjct: 82 AHPLLARAGSPTRSVG 97
>gi|227485017|ref|ZP_03915333.1| DNA ligase (NAD(+)) [Anaerococcus lactolyticus ATCC 51172]
gi|227237014|gb|EEI87029.1| DNA ligase (NAD(+)) [Anaerococcus lactolyticus ATCC 51172]
Length = 667
Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E++ +++ YY LD PL +DG YD++ +L LQ+ E+ P N VG
Sbjct: 6 ELKKIIERINELDYHYYTLDKPLVSDGEYDKLYNQLIKLQKNL-AYVPENSPTNRVG 61
>gi|157164612|ref|YP_001467146.1| NAD-dependent DNA ligase LigA [Campylobacter concisus 13826]
gi|190359238|sp|A7ZED8|DNLJ_CAMC1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|112801346|gb|EAT98690.1| DNA ligase, NAD-dependent [Campylobacter concisus 13826]
Length = 647
Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 22/59 (37%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E E V K YY D PL +D YD + + A ++ P P VG
Sbjct: 3 KQEYEKAVDTLNAWAKAYYDEDEPLASDEEYDALYHAVLAFEQANPSEISLFSPTKRVG 61
>gi|329946006|ref|ZP_08293693.1| DNA ligase [Actinomyces sp. oral taxon 170 str. F0386]
gi|328528454|gb|EGF55432.1| DNA ligase [Actinomyces sp. oral taxon 170 str. F0386]
Length = 811
Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 22/62 (35%), Gaps = 2/62 (3%)
Query: 59 AMIEVEYLVKIALHHQKWYY--RLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
A LV+ + YY +D YD + L+ L+ P L P +
Sbjct: 27 ARERWGELVRDIEAARDAYYNAVDAESSLSDADYDVLYRELEDLEAAHPLLARAGSPTRS 86
Query: 117 VG 118
VG
Sbjct: 87 VG 88
>gi|262341099|ref|YP_003283954.1| DNA ligase [Blattabacterium sp. (Blattella germanica) str. Bge]
gi|262272436|gb|ACY40344.1| DNA ligase [Blattabacterium sp. (Blattella germanica) str. Bge]
Length = 681
Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 65 YLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L K + YY D +D +D+ E L L++++PE +D P +G
Sbjct: 27 QLRKELSKYNYQYYNFDTSDISDFHFDKKLEELFFLEKKYPEFYDPTSPTIKIG 80
>gi|311747945|ref|ZP_07721730.1| DNA ligase, NAD-dependent [Algoriphagus sp. PR1]
gi|126574918|gb|EAZ79276.1| DNA ligase, NAD-dependent [Algoriphagus sp. PR1]
Length = 791
Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 80 LDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
D + +D +D++ E L L+ +FP+L D P VG
Sbjct: 2 EDQAVISDFEFDKLLEELVQLETEFPDLLQPDSPSQRVG 40
>gi|193216704|ref|YP_001999946.1| DNA ligase [Mycoplasma arthritidis 158L3-1]
gi|254781372|sp|B3PMJ0|DNLJ_MYCA5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|193002027|gb|ACF07242.1| DNA ligase [Mycoplasma arthritidis 158L3-1]
Length = 665
Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD----ED 111
K + EV L YY LD PL D +YDR +L L+EQ+ F +
Sbjct: 4 KEKIRNEVFELQAKINEWDNAYYNLDAPLVEDAIYDREILKLKKLEEQYSSYFSFEELAN 63
Query: 112 HPWNTV 117
P +
Sbjct: 64 SPTQKI 69
>gi|194246669|ref|YP_002004308.1| NAD-dependent DNA ligase [Candidatus Phytoplasma mali]
gi|254781388|sp|B3QZS5|DNLJ_PHYMT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|193807026|emb|CAP18462.1| NAD-dependent DNA ligase [Candidatus Phytoplasma mali]
Length = 659
Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 14/62 (22%), Positives = 24/62 (38%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
E + +L+ YY L+ D YD + L L+ ++PE + P
Sbjct: 2 EEIKKRIIFLIDKINKTNYEYYTLNESSLNDQQYDALFRELLYLESKYPEYNYKFSPTTK 61
Query: 117 VG 118
+G
Sbjct: 62 IG 63
>gi|150015242|ref|YP_001307496.1| NAD-dependent DNA ligase LigA [Clostridium beijerinckii NCIMB 8052]
gi|190359245|sp|A6LQB0|DNLJ_CLOB8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|149901707|gb|ABR32540.1| DNA ligase, NAD-dependent [Clostridium beijerinckii NCIMB 8052]
Length = 663
Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ ++ LV+ + YY LD+P +D YD L L+ + E P VG
Sbjct: 4 IERIKELVEKLNRYSYEYYSLDSPSVSDKDYDEKYYELQELERE-TEYVLPYSPTLRVG 61
>gi|6179416|emb|CAB59902.1| DNA ligase [Campylobacter jejuni]
Length = 245
Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++K E + +V +A + YY D PL +D YD + L A +EQ + +D P
Sbjct: 1 MTKKEYLEKVA----LAASWMRAYYEKDEPLASDEEYDALIRELRAFEEQNKDEISKDSP 56
Query: 114 WNTV 117
+
Sbjct: 57 TQKI 60
>gi|283954134|ref|ZP_06371659.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni 414]
gi|283794413|gb|EFC33157.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni 414]
Length = 647
Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K E + +V +A + YY D PL +D YD + L A +EQ + +D P
Sbjct: 1 MKKEEYLEKVA----LANSWMRAYYEKDEPLASDEEYDALIRELRAFEEQNKDEILKDSP 56
Query: 114 WNTV 117
+
Sbjct: 57 TQKI 60
>gi|256832938|ref|YP_003161665.1| DNA ligase, NAD-dependent [Jonesia denitrificans DSM 20603]
gi|256686469|gb|ACV09362.1| DNA ligase, NAD-dependent [Jonesia denitrificans DSM 20603]
Length = 798
Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 7/62 (11%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF---PELFDEDHPWNT 116
+ E L ++ +Q YY D YD + L A++EQ P+ P
Sbjct: 54 QEQWERLARLIQRYQFEYYIQGESSVPDADYDALLAELVAVEEQLGGAPQ----GSPTQR 109
Query: 117 VG 118
VG
Sbjct: 110 VG 111
>gi|269123713|ref|YP_003306290.1| DNA ligase, NAD-dependent [Streptobacillus moniliformis DSM 12112]
gi|268315039|gb|ACZ01413.1| DNA ligase, NAD-dependent [Streptobacillus moniliformis DSM 12112]
Length = 675
Score = 61.4 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 28/49 (57%)
Query: 70 ALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ YY LD L TD YD + ++++ L+++FPEL ++ P +G
Sbjct: 23 IEIYNHHYYNLDESLITDREYDALLKKIELLEKEFPELKLKNSPTEIIG 71
>gi|187776813|ref|ZP_02993286.1| hypothetical protein CLOSPO_00329 [Clostridium sporogenes ATCC
15579]
gi|187775472|gb|EDU39274.1| hypothetical protein CLOSPO_00329 [Clostridium sporogenes ATCC
15579]
Length = 664
Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ LV+ H YY LDN +D YD + L L+++ ++ P VG
Sbjct: 6 EKMKELVEELNQHAYEYYVLDNSSISDKEYDLKYDELVVLEKE-TKVTLPYSPTQRVG 62
>gi|269119219|ref|YP_003307396.1| DNA ligase, NAD-dependent [Sebaldella termitidis ATCC 33386]
gi|268613097|gb|ACZ07465.1| DNA ligase, NAD-dependent [Sebaldella termitidis ATCC 33386]
Length = 669
Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 31/65 (47%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + E L + + + YY + L TD YD + + ++++++++PEL D
Sbjct: 1 MEQTGIKKRYEELKDLIRKYNEHYYEKNESLVTDYEYDMLLKEMESIEKEYPELKDTVSV 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TEKVG 65
>gi|312131728|ref|YP_003999068.1| DNA ligase, nad-dependent [Leadbetterella byssophila DSM 17132]
gi|311908274|gb|ADQ18715.1| DNA ligase, NAD-dependent [Leadbetterella byssophila DSM 17132]
Length = 680
Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 14/61 (22%), Positives = 25/61 (40%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+ ++ L H+ YY +D +D + + L+ L++ PE D P V
Sbjct: 2 DIKTRIQTLTDQINHYNDRYYLDAVSEISDFEFDTLLKELEELEKAHPEFRQPDSPTQRV 61
Query: 118 G 118
G
Sbjct: 62 G 62
>gi|330751993|emb|CBL80506.1| DNA ligase [uncultured Polaribacter sp.]
Length = 665
Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 31/60 (51%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L + +H YY LDN +D +DR + L+ L+++ P F+ + P VG
Sbjct: 3 VEEKIKELREQLNNHNYNYYVLDNATISDFDFDRTLKELEKLEKENPIFFNSNSPTQRVG 62
>gi|27904570|ref|NP_777696.1| DNA ligase [Buchnera aphidicola str. Bp (Baizongia pistaciae)]
gi|32129495|sp|Q89B02|DNLJ_BUCBP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|27903967|gb|AAO26801.1| DNA ligase [Buchnera aphidicola str. Bp (Baizongia pistaciae)]
Length = 672
Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 65 YLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD-EDHPWNTVG 118
L +H Y+ L++P +D YD + L L+++ +D P +VG
Sbjct: 10 KLQDEIRYHAYLYHTLNSPKISDEKYDFLVIELQRLEKKCKYSVRFKDSPTQSVG 64
>gi|282882908|ref|ZP_06291513.1| DNA ligase (NAD(+)) [Peptoniphilus lacrimalis 315-B]
gi|281297319|gb|EFA89810.1| DNA ligase (NAD(+)) [Peptoniphilus lacrimalis 315-B]
Length = 664
Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+A +++ LVK + +YY LD L D +YDR+ + L L+++ + D P V
Sbjct: 2 QASEKMQKLVKELNRYGYYYYTLDKSLIDDKVYDRMYDELVNLEKE-ENIVLADSPTTRV 60
Query: 118 G 118
G
Sbjct: 61 G 61
>gi|32396677|gb|AAP49295.1| NAD-dependent DNA ligase [Meiothermus ruber]
Length = 99
Score = 61.0 bits (147), Expect = 6e-08, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 87 DGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
D YDR+ + L AL+E PEL D P TVG
Sbjct: 1 DAEYDRLLQELRALEEAHPELIIPDSPTQTVG 32
>gi|331270357|ref|YP_004396849.1| DNA ligase [Clostridium botulinum BKT015925]
gi|329126907|gb|AEB76852.1| DNA ligase, NAD-dependent [Clostridium botulinum BKT015925]
Length = 663
Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ LV YY LDNP D YD+ + L L++Q + P VG
Sbjct: 5 KQQIYKLVDELNKLAYEYYVLDNPSVADKDYDKKYDELVQLEKQ-TGMMLPYSPTQRVG 62
>gi|262037707|ref|ZP_06011149.1| DNA ligase (NAD(+)) [Leptotrichia goodfellowii F0264]
gi|261748179|gb|EEY35576.1| DNA ligase (NAD(+)) [Leptotrichia goodfellowii F0264]
Length = 697
Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
E + L + + ++YY D PL +D YD + ++L ++E+ PEL
Sbjct: 16 EEYKKLREDIERYNRYYYDEDRPLISDKEYDDLIKKLQKIEEKNPEL 62
>gi|257484999|ref|ZP_05639040.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. tabaci ATCC
11528]
Length = 181
Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 90 YDRVSERLDALQEQFPELFDEDHPWNTVG 118
YDR+ L AL+ + P L D P VG
Sbjct: 1 YDRLFHELKALEAENPHLVTPDSPTQRVG 29
>gi|300813320|ref|ZP_07093675.1| DNA ligase (NAD(+)) [Peptoniphilus sp. oral taxon 836 str. F0141]
gi|300512591|gb|EFK39736.1| DNA ligase (NAD(+)) [Peptoniphilus sp. oral taxon 836 str. F0141]
Length = 664
Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+A +++ LVK + +YY LD L D +YDR+ + L L+++ + D P V
Sbjct: 2 QASEKMQKLVKELNRYGYYYYTLDKSLIDDKVYDRIYDELVNLEKE-ENIVLADSPTTRV 60
Query: 118 G 118
G
Sbjct: 61 G 61
>gi|213621265|ref|ZP_03374048.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Typhi str. E98-2068]
Length = 50
Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFP 105
++ L HH+ Y+ +D P D YDR+ L L+ Q P
Sbjct: 4 IEQQLTELRTTLRHHEYLYHVMDAPEILDAEYDRLMRELRELEAQRP 50
>gi|153956080|ref|YP_001396845.1| DNA ligase [Clostridium kluyveri DSM 555]
gi|146348938|gb|EDK35474.1| DNA ligase [Clostridium kluyveri DSM 555]
Length = 60
Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+ +VE L K+ YY D TD YD++S +L L++++PE +D P V
Sbjct: 2 DIKNKVEGLSKLIE-----YYNKDESEITDHEYDKLSLKLRKLEKEYPEYARKDSPTQKV 56
Query: 118 G 118
G
Sbjct: 57 G 57
>gi|58584805|ref|YP_198378.1| NAD-dependent DNA ligase, Lig [Wolbachia endosymbiont strain TRS of
Brugia malayi]
gi|75497767|sp|Q5GS88|DNLJ_WOLTR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|58419121|gb|AAW71136.1| NAD-dependent DNA ligase, Lig [Wolbachia endosymbiont strain TRS of
Brugia malayi]
Length = 683
Score = 60.6 bits (146), Expect = 8e-08, Method: Composition-based stats.
Identities = 11/51 (21%), Positives = 22/51 (43%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFP 105
+ + E L +H Y++ P D YD++ ++L ++ Q P
Sbjct: 3 DLEKMIEEFTKLRDQISYHDVLYHQKSKPEIADAEYDKLKQKLVEMEGQLP 53
>gi|296393986|ref|YP_003658870.1| DNA ligase, NAD-dependent [Segniliparus rotundus DSM 44985]
gi|296181133|gb|ADG98039.1| DNA ligase, NAD-dependent [Segniliparus rotundus DSM 44985]
Length = 690
Score = 60.3 bits (145), Expect = 9e-08, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
+ K K L + L HQ YY LD+P TD +D + L L+E+
Sbjct: 1 MSKGKAPARLDPAQ---RWRALADEIREHQFRYYVLDSPTVTDAQFDVLLRELQELEEEH 57
Query: 105 PELFDEDHPWNTVG 118
PEL D P VG
Sbjct: 58 PELASADSPTKLVG 71
>gi|251777669|ref|ZP_04820589.1| DNA ligase, NAD-dependent [Clostridium botulinum E1 str. 'BoNT E
Beluga']
gi|243081984|gb|EES47874.1| DNA ligase, NAD-dependent [Clostridium botulinum E1 str. 'BoNT E
Beluga']
Length = 667
Score = 60.3 bits (145), Expect = 9e-08, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ ++ LV+I + YY LDNP +D YD+ + L L+++ P +G
Sbjct: 5 IERIKELVEILNKYSYDYYVLDNPSVSDKDYDKKYDELKLLEKE-TGFVLPYSPTLRIG 62
>gi|153952455|ref|YP_001398174.1| NAD-dependent DNA ligase LigA [Campylobacter jejuni subsp. doylei
269.97]
gi|190359241|sp|A7H3U4|DNLJ_CAMJD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|152939901|gb|ABS44642.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. doylei
269.97]
Length = 647
Score = 60.3 bits (145), Expect = 9e-08, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K E + +V +A + YY D PL +D YD + L +EQ + +D P
Sbjct: 1 MKKEEYLEKVA----LANLWMRAYYEKDEPLASDEEYDALIRELRVFEEQNKDEVSKDSP 56
Query: 114 WNTV 117
+
Sbjct: 57 TQKI 60
>gi|86149767|ref|ZP_01067996.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni
CF93-6]
gi|88597007|ref|ZP_01100243.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni
84-25]
gi|218562237|ref|YP_002344016.1| NAD-dependent DNA ligase LigA [Campylobacter jejuni subsp. jejuni
NCTC 11168]
gi|122952953|sp|Q0PAT1|DNLJ_CAMJE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|85839585|gb|EAQ56845.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni
CF93-6]
gi|88190696|gb|EAQ94669.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni
84-25]
gi|112359943|emb|CAL34732.1| DNA ligase [Campylobacter jejuni subsp. jejuni NCTC 11168]
gi|284925847|gb|ADC28199.1| NAD-dependent DNA ligase LigA [Campylobacter jejuni subsp. jejuni
IA3902]
gi|315927323|gb|EFV06667.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni
DFVF1099]
gi|315930607|gb|EFV09637.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni 305]
Length = 647
Score = 60.3 bits (145), Expect = 9e-08, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K E + +V +A + YY D PL +D YD + L +EQ + +D P
Sbjct: 1 MKKEEYLEKVA----LANLWMRAYYEKDEPLASDEEYDALIRELRVFEEQNKDEISKDSP 56
Query: 114 WNTV 117
+
Sbjct: 57 TQKI 60
>gi|57238218|ref|YP_178701.1| NAD-dependent DNA ligase LigA [Campylobacter jejuni RM1221]
gi|81353856|sp|Q5HVI4|DNLJ_CAMJR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|57167022|gb|AAW35801.1| DNA ligase, NAD-dependent [Campylobacter jejuni RM1221]
gi|315058000|gb|ADT72329.1| DNA ligase [Campylobacter jejuni subsp. jejuni S3]
Length = 647
Score = 60.3 bits (145), Expect = 9e-08, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K E + +V +A + YY D PL +D YD + L +EQ + +D P
Sbjct: 1 MKKEEYLEKVA----LANLWMRAYYEKDEPLASDEEYDALIRELRVFEEQNKDEISKDSP 56
Query: 114 WNTV 117
+
Sbjct: 57 TQKI 60
>gi|126737638|ref|ZP_01753368.1| DNA ligase, NAD-dependent [Roseobacter sp. SK209-2-6]
gi|126721031|gb|EBA17735.1| DNA ligase, NAD-dependent [Roseobacter sp. SK209-2-6]
Length = 749
Score = 60.3 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 49 KKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF 108
K ++ LS+ EA E+ L + + ++ D +DG YDR RL L + FP+L
Sbjct: 3 KPISDLSENEAQEELNELKLLIWSADRLHHTHDISEISDGAYDREKRRLKELVDTFPKLR 62
>gi|78777542|ref|YP_393857.1| NAD-dependent DNA ligase LigA [Sulfurimonas denitrificans DSM 1251]
gi|123768611|sp|Q30QV9|DNLJ_SULDN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|78498082|gb|ABB44622.1| DNA ligase (NAD+) [Sulfurimonas denitrificans DSM 1251]
Length = 652
Score = 60.3 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
K E I+ L+ + +H YY LD+ + TD +YD++ + +E E ++ P
Sbjct: 2 KKEQYIKAVELLNLYSYH---YYVLDDAITTDEVYDKLYHEVLEYEESHKEDILKNSPTQ 58
Query: 116 TVG 118
VG
Sbjct: 59 RVG 61
>gi|187932891|ref|YP_001884644.1| NAD-dependent DNA ligase LigA [Clostridium botulinum B str. Eklund
17B]
gi|254781292|sp|B2TIZ7|DNLJ_CLOBB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|187721044|gb|ACD22265.1| DNA ligase, NAD-dependent [Clostridium botulinum B str. Eklund 17B]
Length = 667
Score = 60.3 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ ++ LV+I + YY LDNP +D YD+ + L L+++ P +G
Sbjct: 5 IERIKELVEILNKYSYDYYVLDNPSVSDKDYDKEYDELKLLEKE-TGFVLPYSPTLRIG 62
>gi|71893614|ref|YP_279060.1| DNA ligase [Mycoplasma hyopneumoniae J]
Length = 693
Score = 60.3 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED----H 112
+ ++ L + YY+L NPL D +YD+ L+ L+ + LF +
Sbjct: 6 SQIRAKIIELREKIEKWNHHYYQLQNPLVDDLVYDKTLRELEKLERENFFLFSLEELNQS 65
Query: 113 PWNTVG 118
P VG
Sbjct: 66 PSQKVG 71
>gi|166215830|sp|Q4A899|DNLJ_MYCH7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|144575353|gb|AAZ53640.2| DNA ligase [Mycoplasma hyopneumoniae 7448]
Length = 692
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED----H 112
+ ++ L + YY+L NPL D +YD+ L+ L+ + LF +
Sbjct: 5 SQIRAKIIELREKIEKWNHHYYQLQNPLVDDLVYDKTLRELEKLERENFFLFSLEELNQS 64
Query: 113 PWNTVG 118
P VG
Sbjct: 65 PSQKVG 70
>gi|166215831|sp|Q4AA72|DNLJ_MYCHJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|144227540|gb|AAZ44349.2| DNA ligase [Mycoplasma hyopneumoniae J]
Length = 692
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED----H 112
+ ++ L + YY+L NPL D +YD+ L+ L+ + LF +
Sbjct: 5 SQIRAKIIELREKIEKWNHHYYQLQNPLVDDLVYDKTLRELEKLERENFFLFSLEELNQS 64
Query: 113 PWNTVG 118
P VG
Sbjct: 65 PSQKVG 70
>gi|72080605|ref|YP_287663.1| DNA ligase [Mycoplasma hyopneumoniae 7448]
Length = 693
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED----H 112
+ ++ L + YY+L NPL D +YD+ L+ L+ + LF +
Sbjct: 6 SQIRAKIIELREKIEKWNHHYYQLQNPLVDDLVYDKTLRELEKLERENFFLFSLEELNQS 65
Query: 113 PWNTVG 118
P VG
Sbjct: 66 PSQKVG 71
>gi|54020343|ref|YP_115627.1| DNA ligase [Mycoplasma hyopneumoniae 232]
gi|81378764|sp|Q601T8|DNLJ_MYCH2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|53987516|gb|AAV27717.1| DNA ligase [Mycoplasma hyopneumoniae 232]
Length = 692
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED----H 112
+ ++ L + YY+L NPL D +YD+ L+ L+ + LF +
Sbjct: 5 SQIRAKIIELREKIEKWNHHYYQLQNPLVDDLVYDKTLRELEKLERENFFLFSLEELNQS 64
Query: 113 PWNTVG 118
P VG
Sbjct: 65 PSQKVG 70
>gi|332678645|gb|AEE87774.1| DNA ligase [Francisella cf. novicida Fx1]
Length = 678
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 27/65 (41%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
L+K E ++ L Y+ LD P+ +D YD++ L L P+ +
Sbjct: 14 LAKAELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDLVNDNPQFKPINSV 73
Query: 114 WNTVG 118
+ VG
Sbjct: 74 LDRVG 78
>gi|254374741|ref|ZP_04990222.1| hypothetical protein FTDG_00916 [Francisella novicida GA99-3548]
gi|151572460|gb|EDN38114.1| hypothetical protein FTDG_00916 [Francisella novicida GA99-3548]
Length = 678
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 27/65 (41%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
L+K E ++ L Y+ LD P+ +D YD++ L L P+ +
Sbjct: 14 LAKAELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDLVNDNPQFKPINSV 73
Query: 114 WNTVG 118
+ VG
Sbjct: 74 LDRVG 78
>gi|42520616|ref|NP_966531.1| DNA ligase, NAD-dependent [Wolbachia endosymbiont of Drosophila
melanogaster]
gi|81652444|sp|Q73H01|DNLJ_WOLPM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|42410355|gb|AAS14465.1| DNA ligase, NAD-dependent [Wolbachia endosymbiont of Drosophila
melanogaster]
Length = 662
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF-DEDH 112
++ E M E L +H Y++ + P +D YD + ++L ++ PE++ +D
Sbjct: 1 MTNLEKMRE--KLQDQINYHNVLYHQKNKPEISDAEYDELKKKLAEIE---PEIYATQDS 55
>gi|283955998|ref|ZP_06373487.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni 1336]
gi|283792474|gb|EFC31254.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni 1336]
Length = 647
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K E + +V +A + YY D PL +D YD + L +EQ + +D P
Sbjct: 1 MKKEEYLEKVA----LANLWMRAYYEKDEPLASDEEYDALIRELRVFEEQNKDEISKDSP 56
Query: 114 WNTV 117
+
Sbjct: 57 TQKI 60
>gi|208779663|ref|ZP_03247008.1| DNA ligase, NAD-dependent [Francisella novicida FTG]
gi|208744624|gb|EDZ90923.1| DNA ligase, NAD-dependent [Francisella novicida FTG]
Length = 678
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 27/65 (41%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
L+K E ++ L Y+ LD P+ +D YD++ L L P+ +
Sbjct: 14 LAKAELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDLVNDNPQFKPINSV 73
Query: 114 WNTVG 118
+ VG
Sbjct: 74 LDRVG 78
>gi|32396687|gb|AAP49299.1| NAD-dependent DNA ligase [Bacillus circulans]
Length = 108
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 87 DGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
D YD + L AL+EQ+PE +D P VG
Sbjct: 1 DAEYDLFMQELIALEEQYPEFKTKDSPSQRVG 32
>gi|118497929|ref|YP_898979.1| DNA ligase [Francisella tularensis subsp. novicida U112]
gi|194323151|ref|ZP_03056935.1| DNA ligase, NAD-dependent [Francisella tularensis subsp. novicida
FTE]
gi|166215758|sp|A0Q7L0|DNLJ_FRATN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|118423835|gb|ABK90225.1| DNA ligase [Francisella novicida U112]
gi|194322515|gb|EDX19995.1| DNA ligase, NAD-dependent [Francisella tularensis subsp. novicida
FTE]
Length = 678
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 27/65 (41%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
L+K E ++ L Y+ LD P+ +D YD++ L L P+ +
Sbjct: 14 LAKAELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDLVNDNPQFKPINSV 73
Query: 114 WNTVG 118
+ VG
Sbjct: 74 LDRVG 78
>gi|254373281|ref|ZP_04988769.1| hypothetical protein FTCG_00864 [Francisella tularensis subsp.
novicida GA99-3549]
gi|151571007|gb|EDN36661.1| hypothetical protein FTCG_00864 [Francisella novicida GA99-3549]
Length = 678
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 27/65 (41%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
L+K E ++ L Y+ LD P+ +D YD++ L L P+ +
Sbjct: 14 LAKAELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDLVNDNPQFKPINSV 73
Query: 114 WNTVG 118
+ VG
Sbjct: 74 LDRVG 78
>gi|115314545|ref|YP_763268.1| DNA ligase [Francisella tularensis subsp. holarctica OSU18]
gi|122325430|sp|Q0BMQ3|DNLJ_FRATO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|115129444|gb|ABI82631.1| DNA ligase (NAD(+)) [Francisella tularensis subsp. holarctica
OSU18]
Length = 678
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 27/65 (41%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
L+K E ++ L Y+ LD P+ +D YD++ L L P+ +
Sbjct: 14 LAKAELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDLVNDNPQFKPINSV 73
Query: 114 WNTVG 118
+ VG
Sbjct: 74 LDRVG 78
>gi|254368889|ref|ZP_04984902.1| DNA ligase [Francisella tularensis subsp. holarctica FSC022]
gi|157121810|gb|EDO65980.1| DNA ligase [Francisella tularensis subsp. holarctica FSC022]
Length = 678
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 27/65 (41%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
L+K E ++ L Y+ LD P+ +D YD++ L L P+ +
Sbjct: 14 LAKAELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDLVNDNPQFKPINSV 73
Query: 114 WNTVG 118
+ VG
Sbjct: 74 LDRVG 78
>gi|156502078|ref|YP_001428143.1| DNA ligase [Francisella tularensis subsp. holarctica FTNF002-00]
gi|290954221|ref|ZP_06558842.1| DNA ligase [Francisella tularensis subsp. holarctica URFT1]
gi|295312341|ref|ZP_06803126.1| DNA ligase [Francisella tularensis subsp. holarctica URFT1]
gi|166214810|sp|A7NB34|DNLJ_FRATF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|156252681|gb|ABU61187.1| DNA ligase, NAD-dependent [Francisella tularensis subsp. holarctica
FTNF002-00]
Length = 678
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 27/65 (41%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
L+K E ++ L Y+ LD P+ +D YD++ L L P+ +
Sbjct: 14 LAKAELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDLVNDNPQFKPINSV 73
Query: 114 WNTVG 118
+ VG
Sbjct: 74 LDRVG 78
>gi|89256066|ref|YP_513428.1| DNA ligase [Francisella tularensis subsp. holarctica LVS]
gi|167009870|ref|ZP_02274801.1| DNA ligase [Francisella tularensis subsp. holarctica FSC200]
gi|254367402|ref|ZP_04983428.1| DNA ligase [Francisella tularensis subsp. holarctica 257]
gi|123401612|sp|Q2A4C4|DNLJ_FRATH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|89143897|emb|CAJ79115.1| DNA ligase [Francisella tularensis subsp. holarctica LVS]
gi|134253218|gb|EBA52312.1| DNA ligase [Francisella tularensis subsp. holarctica 257]
Length = 678
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 27/65 (41%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
L+K E ++ L Y+ LD P+ +D YD++ L L P+ +
Sbjct: 14 LAKAELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDLVNDNPQFKPINSV 73
Query: 114 WNTVG 118
+ VG
Sbjct: 74 LDRVG 78
>gi|56708436|ref|YP_170332.1| DNA ligase [Francisella tularensis subsp. tularensis SCHU S4]
gi|110670907|ref|YP_667464.1| DNA ligase [Francisella tularensis subsp. tularensis FSC198]
gi|134301572|ref|YP_001121540.1| DNA ligase [Francisella tularensis subsp. tularensis WY96-3418]
gi|187931418|ref|YP_001891402.1| DNA ligase, NAD-dependent [Francisella tularensis subsp.
mediasiatica FSC147]
gi|224457588|ref|ZP_03666061.1| DNA ligase, NAD-dependent [Francisella tularensis subsp. tularensis
MA00-2987]
gi|254875281|ref|ZP_05247991.1| DNA ligase [Francisella tularensis subsp. tularensis MA00-2987]
gi|81597232|sp|Q5NF60|DNLJ_FRATT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|123063401|sp|Q14GL3|DNLJ_FRAT1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|166215759|sp|A4IWW8|DNLJ_FRATW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254781335|sp|B2SFT1|DNLJ_FRATM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|56604928|emb|CAG46020.1| DNA ligase [Francisella tularensis subsp. tularensis SCHU S4]
gi|110321240|emb|CAL09403.1| DNA ligase [Francisella tularensis subsp. tularensis FSC198]
gi|134049349|gb|ABO46420.1| DNA ligase, NAD-dependent [Francisella tularensis subsp. tularensis
WY96-3418]
gi|187712327|gb|ACD30624.1| DNA ligase, NAD-dependent [Francisella tularensis subsp.
mediasiatica FSC147]
gi|254841280|gb|EET19716.1| DNA ligase [Francisella tularensis subsp. tularensis MA00-2987]
gi|282159628|gb|ADA79019.1| DNA ligase, NAD-dependent [Francisella tularensis subsp. tularensis
NE061598]
Length = 678
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 27/65 (41%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
L+K E ++ L Y+ LD P+ +D YD++ L L P+ +
Sbjct: 14 LAKAELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDLVNDNPQFKPINSV 73
Query: 114 WNTVG 118
+ VG
Sbjct: 74 LDRVG 78
>gi|86153540|ref|ZP_01071744.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni
HB93-13]
gi|85843266|gb|EAQ60477.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni
HB93-13]
Length = 647
Score = 59.5 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K E + +V +A + YY D PL +D YD + L +EQ + +D P
Sbjct: 1 MKKEEYLEKVA----LANLWMRAYYEKDEPLASDEEYDALIRELSVFEEQNKDEISKDSP 56
Query: 114 WNTV 117
+
Sbjct: 57 TQKI 60
>gi|148925946|ref|ZP_01809633.1| DNA ligase [Campylobacter jejuni subsp. jejuni CG8486]
gi|145844932|gb|EDK22036.1| DNA ligase [Campylobacter jejuni subsp. jejuni CG8486]
Length = 647
Score = 59.5 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K E + +V +A + YY D PL +D YD + L +EQ + +D P
Sbjct: 1 MKKEEYLEKVA----LANLWMRAYYEKDEPLASDEEYDALIRELSVFEEQNKDEISKDSP 56
Query: 114 WNTV 117
+
Sbjct: 57 TQKI 60
>gi|188587790|ref|YP_001919828.1| NAD-dependent DNA ligase LigA [Clostridium botulinum E3 str. Alaska
E43]
gi|254781291|sp|B2UZ23|DNLJ_CLOBA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|188498071|gb|ACD51207.1| DNA ligase, NAD-dependent [Clostridium botulinum E3 str. Alaska
E43]
Length = 667
Score = 59.5 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ ++ LV+I + YY LDNP +D YD+ + L L+++ + P +G
Sbjct: 5 IERIKELVEILNKYSYDYYVLDNPSVSDKDYDKKYDELKLLEKE-TGVVLPYSPTLRIG 62
>gi|154174322|ref|YP_001408016.1| NAD-dependent DNA ligase LigA [Campylobacter curvus 525.92]
gi|190359239|sp|A7GXS4|DNLJ_CAMC5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|112803310|gb|EAU00654.1| DNA ligase, NAD-dependent [Campylobacter curvus 525.92]
Length = 654
Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 14/68 (20%), Positives = 26/68 (38%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
+ + + ++ E V K YY D P+ +D YD + + A ++ P
Sbjct: 1 MENFMRIDSKESYENAVATLNAWAKAYYDDDAPIASDEEYDALYHEVLAYEQVNPAQKSL 60
Query: 111 DHPWNTVG 118
P +G
Sbjct: 61 FSPTTRIG 68
>gi|33519955|ref|NP_878787.1| DNA ligase [Candidatus Blochmannia floridanus]
gi|81666906|sp|Q7VRU2|DNLJ_BLOFL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|33504301|emb|CAD83193.1| DNA ligase [Candidatus Blochmannia floridanus]
Length = 594
Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 12/59 (20%), Positives = 24/59 (40%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
V+ L + + + YY +D YD + E L L+ ++P L + ++
Sbjct: 4 IKNRVQILRERLNYLEYLYYVKSESKVSDEEYDILLEELRQLEFKYPYLITKSSSTQSI 62
>gi|332184463|gb|AEE26717.1| DNA ligase [Francisella cf. novicida 3523]
Length = 678
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 28/65 (43%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
L+K E ++ L Y+ LD P+ +D YD++ L L + P+ +
Sbjct: 14 LAKPELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDLVDDNPQFKPTNSV 73
Query: 114 WNTVG 118
+ VG
Sbjct: 74 LDRVG 78
>gi|190570889|ref|YP_001975247.1| DNA ligase, NAD-dependent [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|213019404|ref|ZP_03335210.1| DNA ligase, NAD-dependent [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
gi|254782310|sp|B3CPS1|DNLJ_WOLPP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|190357161|emb|CAQ54574.1| DNA ligase, NAD-dependent [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|212994826|gb|EEB55468.1| DNA ligase, NAD-dependent [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
Length = 651
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF-DEDH 112
++ E M E L +H YY+ P +D YD + ++L A++ PE + +D
Sbjct: 1 MTDLEKMRE--KLQNQINYHNILYYQKSKPEISDAEYDELKKKLAAIE---PEAYATQDS 55
>gi|406012|gb|AAD10575.1| Significant homology to DNA ligase M74792 [Mycoplasma genitalium]
Length = 60
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 22/48 (45%)
Query: 69 IALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ ++ YY L PL D YD + + L L++ P+L D P
Sbjct: 2 LIKNYDYHYYVLSEPLIDDFEYDMLYKSLQQLEKDHPDLIQIDSPTQR 49
>gi|283769205|ref|ZP_06342109.1| NAD-dependent DNA ligase domain protein [Bulleidia extructa W1219]
gi|283104181|gb|EFC05560.1| NAD-dependent DNA ligase domain protein [Bulleidia extructa W1219]
Length = 656
Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+ L++ YY + +D +DR+ + L AL+EQ L D P V
Sbjct: 4 KERMLALIQQLNEASNAYYNGQREILSDQEWDRLFDELKALEEQ-TGLILPDSPTQKV 60
>gi|223039682|ref|ZP_03609968.1| DNA ligase, NAD-dependent [Campylobacter rectus RM3267]
gi|222879065|gb|EEF14160.1| DNA ligase, NAD-dependent [Campylobacter rectus RM3267]
Length = 647
Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 20/59 (33%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E V K YY D P+ TD YD + ++ + P P VG
Sbjct: 3 KKEYLEAVDTLNAWAKAYYTDDAPIATDEEYDELYHKVLEFERANPGDISMFSPTKRVG 61
>gi|154502207|ref|ZP_02039267.1| hypothetical protein RUMGNA_00017 [Ruminococcus gnavus ATCC 29149]
gi|153797086|gb|EDN79506.1| hypothetical protein RUMGNA_00017 [Ruminococcus gnavus ATCC 29149]
Length = 663
Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
+ ++ LV+ ++ YY +D YDR+ + L L+ + + + P +VGY
Sbjct: 17 VKRIKELVEQLNEYRDAYYNEARSDVSDAEYDRLFDELSELENE-TGVVYTNSPTQSVGY 75
>gi|86151833|ref|ZP_01070047.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni
260.94]
gi|85841462|gb|EAQ58710.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni
260.94]
Length = 647
Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K E + +V +A + YY D PL +D YD + L +EQ + +D P
Sbjct: 1 MKKEEYLEKVA----LANLWMRAYYEKDEPLASDEEYDVLIRELRVFEEQNKDEISKDSP 56
Query: 114 WNTV 117
+
Sbjct: 57 TQKI 60
>gi|121612203|ref|YP_001000287.1| NAD-dependent DNA ligase LigA [Campylobacter jejuni subsp. jejuni
81-176]
gi|167005239|ref|ZP_02270997.1| NAD-dependent DNA ligase LigA [Campylobacter jejuni subsp. jejuni
81-176]
gi|166215572|sp|A1VYU6|DNLJ_CAMJJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|87250057|gb|EAQ73015.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni
81-176]
Length = 647
Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K E + +V +A + YY D PL +D YD + L +EQ + +D P
Sbjct: 1 MKKEEYLEKVA----LANLWMRAYYEKDEPLASDEEYDVLIRELRVFEEQNKDEISKDSP 56
Query: 114 WNTV 117
+
Sbjct: 57 TQKI 60
>gi|225630391|ref|YP_002727182.1| DNA ligase [Wolbachia sp. wRi]
gi|254782311|sp|C0R399|DNLJ_WOLWR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|225592372|gb|ACN95391.1| DNA ligase [Wolbachia sp. wRi]
Length = 662
Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF 108
++ E M E L +H Y++ + P +D YD + ++L ++ PE++
Sbjct: 1 MTNLEKMRE--KLQDQINYHNVLYHQKNKPEISDAEYDELKKKLAEIE---PEIY 50
>gi|315124105|ref|YP_004066109.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni
ICDCCJ07001]
gi|315017827|gb|ADT65920.1| DNA ligase, NAD-dependent [Campylobacter jejuni subsp. jejuni
ICDCCJ07001]
Length = 561
Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K E + +V +A + YY D PL +D YD + L +EQ + +D P
Sbjct: 1 MKKEEYLEKVA----LANLWMRAYYEKDEPLASDEEYDVLIRELRVFEEQNKDEISKDSP 56
Query: 114 WNTV 117
+
Sbjct: 57 TQKI 60
>gi|225028066|ref|ZP_03717258.1| hypothetical protein EUBHAL_02336 [Eubacterium hallii DSM 3353]
gi|224954614|gb|EEG35823.1| hypothetical protein EUBHAL_02336 [Eubacterium hallii DSM 3353]
Length = 653
Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
++ LV++ K YY+ D LF++ YD + + L AL+ + + P VGY
Sbjct: 4 QARMKKLVEVLNQASKAYYQEDRELFSNKEYDELYDELQALEAE-TGIVMSQSPTQNVGY 62
>gi|254458916|ref|ZP_05072339.1| DNA ligase, NAD-dependent [Campylobacterales bacterium GD 1]
gi|207084187|gb|EDZ61476.1| DNA ligase, NAD-dependent [Campylobacterales bacterium GD 1]
Length = 653
Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
++ + VE L + HH YY LD+P+ TD +YD++ + +E P
Sbjct: 1 MNLEDYKKAVEQL-NLYSHH---YYVLDDPITTDEVYDKLYHEVVRFEENNKNAVLYSSP 56
Query: 114 WNTVG 118
VG
Sbjct: 57 SQRVG 61
>gi|71082725|ref|YP_265444.1| DNA ligase [Candidatus Pelagibacter ubique HTCC1062]
gi|123775550|sp|Q4FPL3|DNLJ_PELUB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|71061838|gb|AAZ20841.1| DNA ligase [Candidatus Pelagibacter ubique HTCC1062]
Length = 676
Score = 57.6 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 62 EVEYLVKI--ALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
E+EYL KI H K YY + P+ +D +D + + + L+ ++ L E P ++G+
Sbjct: 7 EIEYLKKIDLFQRHNKHYYDKNKPIVSDQEFDLLKKDIIDLERKYKFLKSEYSPTKSIGF 66
>gi|58696662|ref|ZP_00372215.1| DNA ligase, NAD-dependent [Wolbachia endosymbiont of Drosophila
simulans]
gi|58537163|gb|EAL60267.1| DNA ligase, NAD-dependent [Wolbachia endosymbiont of Drosophila
simulans]
Length = 656
Score = 57.6 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 11/45 (24%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 64 EYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF 108
E L +H Y++ + P +D YD + ++L ++ PE++
Sbjct: 3 EKLQDQINYHNVLYHQKNKPEISDAEYDELKKKLAEIE---PEIY 44
>gi|154499783|ref|ZP_02037821.1| hypothetical protein BACCAP_03440 [Bacteroides capillosus ATCC
29799]
gi|150271381|gb|EDM98638.1| hypothetical protein BACCAP_03440 [Bacteroides capillosus ATCC
29799]
Length = 673
Score = 57.6 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 64 EYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
L ++ YY L++P +D +YDR+ E L L+ + + P NTVGY
Sbjct: 10 RELNDRLNRYRNEYYNLNSPSVSDAVYDRLFEELQELESA-TGVQMSNSPTNTVGY 64
>gi|302385528|ref|YP_003821350.1| DNA ligase, NAD-dependent [Clostridium saccharolyticum WM1]
gi|302196156|gb|ADL03727.1| DNA ligase, NAD-dependent [Clostridium saccharolyticum WM1]
Length = 672
Score = 57.6 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ L + +++ YY + P +D +YDR+ ++L L++Q + + P T
Sbjct: 3 ANIYEKQRDLTERLNIYREQYYDHNAPSVSDEIYDRLFDKLKELEQQ-TGIHMANSPTQT 61
Query: 117 VGY 119
VGY
Sbjct: 62 VGY 64
>gi|253680829|ref|ZP_04861632.1| DNA ligase, NAD-dependent [Clostridium botulinum D str. 1873]
gi|253562678|gb|EES92124.1| DNA ligase, NAD-dependent [Clostridium botulinum D str. 1873]
Length = 664
Score = 57.2 bits (137), Expect = 7e-07, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ LV YY LDNP D YD+ + L L+++ L P VG
Sbjct: 5 KQKIYKLVDELNKLAYEYYVLDNPSVADKDYDKKYDELVQLEKETGMLLS-YSPTQRVG 62
>gi|167769644|ref|ZP_02441697.1| hypothetical protein ANACOL_00978 [Anaerotruncus colihominis DSM
17241]
gi|167668005|gb|EDS12135.1| hypothetical protein ANACOL_00978 [Anaerotruncus colihominis DSM
17241]
Length = 674
Score = 57.2 bits (137), Expect = 8e-07, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 64 EYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
L ++ YY + P +D +YDR+ + L L+++ + + P TVGY
Sbjct: 10 RELNDRLNRYRDEYYNRNAPSVSDEVYDRLFDELKELEQE-TGIQMANSPTQTVGY 64
>gi|323485875|ref|ZP_08091210.1| hypothetical protein HMPREF9474_02961 [Clostridium symbiosum
WAL-14163]
gi|323400863|gb|EGA93226.1| hypothetical protein HMPREF9474_02961 [Clostridium symbiosum
WAL-14163]
Length = 674
Score = 56.8 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 64 EYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
L ++ YY + P +D +YDR+ + L L+++ + + P TVGY
Sbjct: 10 RDLNDRLNRYRDEYYNRNAPSVSDEVYDRLFDELKELEQE-TGIQMANSPTQTVGY 64
>gi|319760626|ref|YP_004124564.1| DNA ligase [Candidatus Blochmannia vafer str. BVAF]
gi|318039340|gb|ADV33890.1| DNA ligase [Candidatus Blochmannia vafer str. BVAF]
Length = 598
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 72 HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ YY + +D YD+ + L L+ ++P L E+ P +G
Sbjct: 17 QWEYAYYLKNESETSDEEYDKTLQELRQLEFEYPCLITENSPTKFLG 63
>gi|325661475|ref|ZP_08150101.1| DNA ligase [Lachnospiraceae bacterium 4_1_37FAA]
gi|325472424|gb|EGC75636.1| DNA ligase [Lachnospiraceae bacterium 4_1_37FAA]
Length = 660
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
++ L K ++ YY + +D YD++ + L+ L+ + L + P TVG+
Sbjct: 5 ERIKELTKKLNEYRNAYYNESESIISDYEYDKLYDELEKLENE-TGLSFANSPTKTVGF 62
>gi|254389746|ref|ZP_05004971.1| DNA ligase [Streptomyces clavuligerus ATCC 27064]
gi|197703458|gb|EDY49270.1| DNA ligase [Streptomyces clavuligerus ATCC 27064]
Length = 719
Score = 56.0 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 2/84 (2%)
Query: 35 LPNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRL-DNPLFTDGLYDRV 93
L + + + V + S + E E ++ + YY D+P D YD++
Sbjct: 23 LSDPHERITLMTTLPAVQAQSAVSSRTEYEAALQRLRDASRAYYGDGDSP-LDDATYDQL 81
Query: 94 SERLDALQEQFPELFDEDHPWNTV 117
+ A +++ P D P V
Sbjct: 82 RRSVLAWEQENPAEVSPDSPTGLV 105
>gi|118474676|ref|YP_892270.1| NAD-dependent DNA ligase LigA [Campylobacter fetus subsp. fetus
82-40]
gi|166215570|sp|A0RPY7|DNLJ_CAMFF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|118413902|gb|ABK82322.1| DNA ligase, NAD-dependent [Campylobacter fetus subsp. fetus 82-40]
Length = 645
Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
K YY D+P+ +D YD++ + +++ P+L P N +G
Sbjct: 16 WAKAYYTDDSPMASDDEYDKLYNAVVQFEKENPDLKLSYSPTNRIG 61
>gi|295093347|emb|CBK82438.1| DNA ligase, NAD-dependent [Coprococcus sp. ART55/1]
Length = 678
Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
+ ++ LVK K YY D + ++ YD + + L+AL+++ + + P VGY
Sbjct: 27 IARIKELVKQLNDAAKKYYMEDTEIMSNLEYDALYDELNALEKE-TGMVMSNSPTVKVGY 85
>gi|269114974|ref|YP_003302737.1| NAD(+)-dependent DNA ligase [Mycoplasma hominis]
gi|268322599|emb|CAX37334.1| NAD(+)-dependent DNA ligase [Mycoplasma hominis ATCC 23114]
Length = 668
Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE----DH 112
+ E+ L YY LD+P D +YD +L AL+E++ F + +
Sbjct: 8 EKIRKEIFDLQAKISAWDNAYYNLDSPEVPDEIYDVEFNKLKALEEKYASFFSDEELKNS 67
Query: 113 PWNTV 117
P +
Sbjct: 68 PTRKI 72
>gi|91762853|ref|ZP_01264818.1| DNA ligase [Candidatus Pelagibacter ubique HTCC1002]
gi|91718655|gb|EAS85305.1| DNA ligase [Candidatus Pelagibacter ubique HTCC1002]
Length = 676
Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 62 EVEYLVKI--ALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
E+EYL KI H K YY + P+ +D +D + + + L+ ++ L E P ++G+
Sbjct: 7 EIEYLKKIDLFQTHNKHYYDKNKPIVSDQEFDLLKKDIIDLESKYKFLKSEYSPTKSIGF 66
>gi|18311241|ref|NP_563175.1| NAD-dependent DNA ligase LigA [Clostridium perfringens str. 13]
gi|18145924|dbj|BAB81965.1| DNA ligase [Clostridium perfringens str. 13]
Length = 665
Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK + +E LV+ + YY L N TD YD+ L L+++ P
Sbjct: 1 MSKMDKKKLIEELVEELNKYAYEYYVLGNSSVTDKDYDKKYYELVDLEKE-TGYKLPYSP 59
Query: 114 WNTVG 118
VG
Sbjct: 60 TQRVG 64
>gi|116514984|ref|YP_802613.1| DNA ligase [Buchnera aphidicola str. Cc (Cinara cedri)]
gi|122285620|sp|Q058C9|DNLJ_BUCCC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|116256838|gb|ABJ90520.1| DNA ligase [Buchnera aphidicola str. Cc (Cinara cedri)]
Length = 587
Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 24/43 (55%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
++ L +H Y+ LD+P+ +D LYD + +L L++ +
Sbjct: 7 QILKLQLQIKYHNYMYHTLDSPIISDILYDELYNKLLQLEKLY 49
>gi|237751760|ref|ZP_04582240.1| NAD-dependent DNA ligase LigA [Helicobacter bilis ATCC 43879]
gi|229373126|gb|EEO23517.1| NAD-dependent DNA ligase LigA [Helicobacter bilis ATCC 43879]
Length = 686
Score = 56.0 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 57 GEAMIEVEYL--VKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
E EYL +K + K YY LD+P+ +D YD + + + +E + +D P
Sbjct: 2 QEIKSHEEYLESIKTLNLYAKHYYELDDPIASDFEYDMLYKAVKLYEENNIDKIAKDSPT 61
Query: 115 NTVG 118
+G
Sbjct: 62 QRIG 65
>gi|163816857|ref|ZP_02208220.1| hypothetical protein COPEUT_03048 [Coprococcus eutactus ATCC 27759]
gi|158448114|gb|EDP25109.1| hypothetical protein COPEUT_03048 [Coprococcus eutactus ATCC 27759]
Length = 678
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
+ ++ LVK K YY D + ++ YD + + L AL+++ + + P VGY
Sbjct: 27 IARIKELVKQLNDAAKKYYMEDTEIMSNLEYDALYDELSALEKE-TGMVMSNSPTVKVGY 85
>gi|257466592|ref|ZP_05630903.1| NAD-dependent DNA ligase [Fusobacterium gonidiaformans ATCC 25563]
gi|315917747|ref|ZP_07913987.1| DNA ligase [Fusobacterium gonidiaformans ATCC 25563]
gi|313691622|gb|EFS28457.1| DNA ligase [Fusobacterium gonidiaformans ATCC 25563]
Length = 676
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK E E L K + YY + L +D YD + + L+ L+ + ++ ++D
Sbjct: 2 ISKKEKENRREELQKKLQRYSDAYYSQNESLISDYEYDMLLKELENLEAEL-QIQNKDSI 60
Query: 114 WNTVG 118
TVG
Sbjct: 61 TQTVG 65
>gi|291545735|emb|CBL18843.1| pseudouridine synthase family [Ruminococcus sp. SR1/5]
Length = 610
Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
+++ L + + YY+ D + ++ YD + + L AL+++ + D P VGY
Sbjct: 168 KKMKELGEKLREASRAYYQEDREIMSNVEYDALYDTLSALEKE-TGIVLADSPTVNVGY 225
>gi|160895209|ref|ZP_02075981.1| hypothetical protein CLOL250_02768 [Clostridium sp. L2-50]
gi|156863088|gb|EDO56519.1| hypothetical protein CLOL250_02768 [Clostridium sp. L2-50]
Length = 653
Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E ++ LV+ K YY+ D + ++ YD + + L L+++ + + P V
Sbjct: 2 EKRDRIKELVEKLNEASKKYYQEDTEIMSNLEYDALYDELVELEKE-TGIVMSNSPTVHV 60
Query: 118 GY 119
GY
Sbjct: 61 GY 62
>gi|254383856|ref|ZP_04999203.1| DNA ligase [Streptomyces sp. Mg1]
gi|194342748|gb|EDX23714.1| DNA ligase [Streptomyces sp. Mg1]
Length = 696
Score = 54.9 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 4/83 (4%)
Query: 35 LPNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVS 94
L +AL S + + E + L + + YY + + D YDR+
Sbjct: 4 LTAAQALSSTSGTSGPAALTGRSEYEAALRRLREA----SQAYYGDGDSVMDDASYDRLR 59
Query: 95 ERLDALQEQFPELFDEDHPWNTV 117
L A + + P P V
Sbjct: 60 LALLAWETEHPAEVAPGSPTTLV 82
>gi|47459030|ref|YP_015892.1| NAD(+)-dependent DNA ligase [Mycoplasma mobile 163K]
gi|81614352|sp|Q6KI95|DNLJ_MYCMO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|47458358|gb|AAT27681.1| NAD(+)-dependent DNA ligase [Mycoplasma mobile 163K]
Length = 671
Score = 54.9 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 28/72 (38%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
K+K + + E L K Y+ D PL D +YD +L + Q+
Sbjct: 4 KSKMNDNEKNNRIISEYNDLKNKINLWNKAYFDYDEPLVEDSIYDATLLKLIKFENQYKF 63
Query: 107 LFDEDHPWNTVG 118
L + D P +G
Sbjct: 64 LDNSDSPTKNIG 75
>gi|82701055|ref|YP_418155.1| putative NAD-dependent DNA ligase [Pseudomonas phage EL]
gi|82657960|emb|CAG27216.1| putative NAD-dependent DNA ligase [Pseudomonas phage EL]
Length = 656
Score = 54.9 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 28/54 (51%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
+ K + ++YL + +H Y+ + +D YD + + L+ L +++PE+
Sbjct: 1 MGKHSPVERIKYLHEQLTYHAHLYFVENRNEISDEAYDVLEQELNELYDRYPEI 54
>gi|261886171|ref|ZP_06010210.1| NAD-dependent DNA ligase LigA [Campylobacter fetus subsp.
venerealis str. Azul-94]
Length = 292
Score = 54.9 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
K YY D+P+ +D YD++ + +++ P+L P N +G
Sbjct: 16 WAKAYYTDDSPMASDDEYDKLYNAVVQFEKENPDLKLSYSPTNRIG 61
>gi|326445394|ref|ZP_08220128.1| DNA ligase [Streptomyces clavuligerus ATCC 27064]
Length = 687
Score = 54.1 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 8/79 (10%)
Query: 40 ALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRL-DNPLFTDGLYDRVSERLD 98
+ V+S ++ EA ++ L + YY D+P D YD++ +
Sbjct: 2 TTLPAVQAQSAVSSRTEYEAALQ--RLRDA----SRAYYGDGDSP-LDDATYDQLRRSVL 54
Query: 99 ALQEQFPELFDEDHPWNTV 117
A +++ P D P V
Sbjct: 55 AWEQENPAEVSPDSPTGLV 73
>gi|297621454|ref|YP_003709591.1| NAD-dependent DNA ligase LigA [Waddlia chondrophila WSU 86-1044]
gi|297376755|gb|ADI38585.1| NAD-dependent DNA ligase LigA [Waddlia chondrophila WSU 86-1044]
Length = 665
Score = 54.1 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 26/55 (47%)
Query: 64 EYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E L K H K YY PL D +D + + L+ +++ PE D + P VG
Sbjct: 7 EALCKEVWEHNKRYYIDHAPLINDEEFDLLLKELEEIEKMHPEWIDPNSPTQRVG 61
>gi|284031885|ref|YP_003381816.1| DNA ligase, NAD-dependent [Kribbella flavida DSM 17836]
gi|283811178|gb|ADB33017.1| DNA ligase, NAD-dependent [Kribbella flavida DSM 17836]
Length = 671
Score = 54.1 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+E L + + YYR P D YD + + L AL PEL + +P + VG
Sbjct: 12 ERIETLADQIVQLRDAYYRG-APAVADAEYDAIEDELRALIAAHPELAPDPNPLDQVG 68
>gi|255994850|ref|ZP_05427985.1| DNA ligase [Eubacterium saphenum ATCC 49989]
gi|255993563|gb|EEU03652.1| DNA ligase [Eubacterium saphenum ATCC 49989]
Length = 647
Score = 54.1 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
+ + L+ I K YY N + ++ YD + + L AL+E+ + P VGY
Sbjct: 4 ITRMNELIDILSKANKAYYSDANEIMSNREYDELYDELQALEEE-SGIVLAASPTVNVGY 62
>gi|54024876|ref|YP_119118.1| putative DNA ligase [Nocardia farcinica IFM 10152]
gi|81374723|sp|Q5YVN7|DNLJ1_NOCFA RecName: Full=DNA ligase 1; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] 1
gi|54016384|dbj|BAD57754.1| putative DNA ligase [Nocardia farcinica IFM 10152]
Length = 663
Score = 54.1 bits (129), Expect = 7e-06, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+A + L + + YY PL D YD V + L AL PEL + +P + V
Sbjct: 2 DAGERIRELADRIVELRTAYY-EGAPLVADAEYDAVEDELRALIAAHPELAPDPNPLDQV 60
Query: 118 G 118
G
Sbjct: 61 G 61
>gi|197294788|ref|YP_001799329.1| NAD-dependent DNA ligase [Candidatus Phytoplasma australiense]
gi|254781387|sp|B1VAY1|DNLJ_PHYAS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|171854115|emb|CAM12104.1| NAD-dependent DNA ligase [Candidatus Phytoplasma australiense]
Length = 670
Score = 54.1 bits (129), Expect = 7e-06, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 25/60 (41%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+++ L YY NP TD YD + + L L+++FP+ P +G
Sbjct: 7 IEKKIKDLTNQLNEANYEYYVKSNPKLTDQQYDALLKELLVLEKKFPQFTLPYSPTLKIG 66
>gi|82548271|gb|ABB82962.1| NAD-dependent DNA ligase [uncultured organism HF70_19B12]
Length = 707
Score = 54.1 bits (129), Expect = 7e-06, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 21/48 (43%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
+ E + L H + YY P TD +D + +RL + P+L
Sbjct: 8 ISEADRLASEIQRHSELYYNYAEPEITDAQFDLLIQRLREIDPSNPQL 55
>gi|281358582|ref|ZP_06245061.1| DNA ligase (NAD(+)) [Victivallis vadensis ATCC BAA-548]
gi|281314930|gb|EFA98964.1| DNA ligase (NAD(+)) [Victivallis vadensis ATCC BAA-548]
Length = 626
Score = 53.7 bits (128), Expect = 7e-06, Method: Composition-based stats.
Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 64 EYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
+ L+++ +H + Y+ P D YD + L L+ EL
Sbjct: 14 DELIRLIEYHNRRYWDEGEPEIPDARYDELIRALQKLEPDH-ELVT 58
>gi|239624075|ref|ZP_04667106.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239522106|gb|EEQ61972.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 650
Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats.
Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ + ++ LV K YY+ + ++ YDR+ + L +L+++ + P
Sbjct: 2 EDRIQRMKELVSTLRQAGKAYYQESREIMSNFEYDRLYDELCSLEKE-TGIIMSGSPTQR 60
Query: 117 VGY 119
VGY
Sbjct: 61 VGY 63
>gi|255321406|ref|ZP_05362566.1| DNA ligase, NAD-dependent [Campylobacter showae RM3277]
gi|255301559|gb|EET80816.1| DNA ligase, NAD-dependent [Campylobacter showae RM3277]
Length = 647
Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 19/59 (32%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
E V K YY D P+ TD YD + ++ + P VG
Sbjct: 3 KKEYLEAVDTLNAWAKAYYTDDAPIATDEEYDELYHKVLEFERANLGEISMFSPTKRVG 61
>gi|168216777|ref|ZP_02642402.1| DNA ligase, NAD-dependent [Clostridium perfringens NCTC 8239]
gi|182381157|gb|EDT78636.1| DNA ligase, NAD-dependent [Clostridium perfringens NCTC 8239]
Length = 662
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+E LV+ + YY L N TD YD+ L L+++ P VG
Sbjct: 7 IEELVEELNKYAYEYYVLGNSSVTDKDYDKKYYELVDLEKE-TGYKLPYSPTQRVG 61
>gi|168211265|ref|ZP_02636890.1| DNA ligase, NAD-dependent [Clostridium perfringens B str. ATCC
3626]
gi|170710700|gb|EDT22882.1| DNA ligase, NAD-dependent [Clostridium perfringens B str. ATCC
3626]
Length = 662
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+E LV+ + YY L N TD YD+ L L+++ P VG
Sbjct: 7 IEELVEELNKYAYEYYVLGNSSVTDKDYDKKYYELVDLEKE-TGYKLPYSPTQRVG 61
>gi|166215590|sp|Q8XI62|DNLJ_CLOPE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
Length = 662
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+E LV+ + YY L N TD YD+ L L+++ P VG
Sbjct: 7 IEELVEELNKYAYEYYVLGNSSVTDKDYDKKYYELVDLEKE-TGYKLPYSPTQRVG 61
>gi|110801053|ref|YP_696931.1| NAD-dependent DNA ligase LigA [Clostridium perfringens ATCC 13124]
gi|123049624|sp|Q0TN59|DNLJ_CLOP1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|110675700|gb|ABG84687.1| DNA ligase, NAD-dependent [Clostridium perfringens ATCC 13124]
Length = 662
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+E LV+ + YY L N TD YD+ L L+++ P VG
Sbjct: 7 IEELVEELNKYAYEYYVLGNSSVTDKDYDKKYYELVDLEKE-TGYKLPYSPTQRVG 61
>gi|182625562|ref|ZP_02953333.1| DNA ligase, NAD-dependent [Clostridium perfringens D str. JGS1721]
gi|177909250|gb|EDT71715.1| DNA ligase, NAD-dependent [Clostridium perfringens D str. JGS1721]
Length = 662
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+E LV+ + YY L N TD YD+ L L+++ P VG
Sbjct: 7 IEELVEELNKYAYEYYVLGNSSVTDKDYDKKYYELVDLEKE-TGYKLPYSPTQRVG 61
>gi|168213168|ref|ZP_02638793.1| DNA ligase, NAD-dependent [Clostridium perfringens CPE str. F4969]
gi|170715278|gb|EDT27460.1| DNA ligase, NAD-dependent [Clostridium perfringens CPE str. F4969]
Length = 662
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+E LV+ + YY L N TD YD+ L L+++ P VG
Sbjct: 7 IEELVEELNKYAYEYYVLGNSSVTDKDYDKKYYELVDLEKE-TGYKLPYSPTQRVG 61
>gi|168205087|ref|ZP_02631092.1| DNA ligase, NAD-dependent [Clostridium perfringens E str. JGS1987]
gi|170663244|gb|EDT15927.1| DNA ligase, NAD-dependent [Clostridium perfringens E str. JGS1987]
Length = 662
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+E LV+ + YY L N TD YD+ L L+++ P VG
Sbjct: 7 IEELVEELNKYAYEYYVLGNSSVTDKDYDKKYYELVDLEKE-TGYKLPYSPTQRVG 61
>gi|110803876|ref|YP_699521.1| NAD-dependent DNA ligase LigA [Clostridium perfringens SM101]
gi|122956526|sp|Q0SQT6|DNLJ_CLOPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|110684377|gb|ABG87747.1| DNA ligase, NAD-dependent [Clostridium perfringens SM101]
Length = 662
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+E LV+ + YY L N TD YD+ L L+++ P VG
Sbjct: 7 IEELVEELNKYAYEYYVLGNSSVTDKDYDKKYYELVDLEKE-TGYKLPYSPTQRVG 61
>gi|240047590|ref|YP_002960978.1| DNA ligase [Mycoplasma conjunctivae HRC/581]
gi|239985162|emb|CAT05172.1| DNA ligase [Mycoplasma conjunctivae]
Length = 673
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED-- 111
+ E ++ L K + Y+ L NP D +YD ++L L+ ++ LF +
Sbjct: 1 MENHEIKQQILQLRKKIENWNHEYFDLQNPSVDDLIYDEELKKLKILENKYYFLFSLEEL 60
Query: 112 --HPWNTVG 118
P +G
Sbjct: 61 NSSPTQQIG 69
>gi|169347054|ref|ZP_02865996.1| DNA ligase, NAD-dependent [Clostridium perfringens C str. JGS1495]
gi|169296737|gb|EDS78866.1| DNA ligase, NAD-dependent [Clostridium perfringens C str. JGS1495]
Length = 662
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+E LV+ + YY L N TD YD+ L L+++ P VG
Sbjct: 7 IEELVEELNKYAYEYYVLGNSSVTDKDYDKKYYELLDLEKE-TGYKLPYSPTQRVG 61
>gi|261414540|ref|YP_003248223.1| DNA ligase, NAD-dependent [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261370996|gb|ACX73741.1| DNA ligase, NAD-dependent [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|302326001|gb|ADL25202.1| DNA ligase (NAD+) [Fibrobacter succinogenes subsp. succinogenes
S85]
Length = 715
Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 7/74 (9%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
+ + K + L K + YY+ +D +D + ++AL+ ++
Sbjct: 1 MSEQKDID-------RTRYFELKKQLEEASRLYYKDGVSPMSDQDFDFGLKEMEALEAKY 53
Query: 105 PELFDEDHPWNTVG 118
PEL + VG
Sbjct: 54 PELRGKGSLTQKVG 67
>gi|291460667|ref|ZP_06600057.1| DNA ligase, NAD-dependent [Oribacterium sp. oral taxon 078 str.
F0262]
gi|291416626|gb|EFE90345.1| DNA ligase, NAD-dependent [Oribacterium sp. oral taxon 078 str.
F0262]
Length = 664
Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 13/60 (21%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
+ ++ L+ I K YY+ + + ++ YD++ + L L+ + + P VGY
Sbjct: 3 IERMKELIGILNRASKAYYQDGDEIMSNLEYDKLYDELQGLERE-TGIVLSASPTERVGY 61
>gi|58699501|ref|ZP_00374229.1| DNA ligase, NAD-dependent [Wolbachia endosymbiont of Drosophila
ananassae]
gi|58533981|gb|EAL58252.1| DNA ligase, NAD-dependent [Wolbachia endosymbiont of Drosophila
ananassae]
Length = 143
Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 11/45 (24%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 64 EYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF 108
E L +H Y++ + P +D YD + ++L ++ PE++
Sbjct: 9 EKLQDQINYHNVLYHQKNKPEISDAEYDELKKKLAEIE---PEIY 50
>gi|281212695|gb|EFA86855.1| BRCT domain-containing protein [Polysphondylium pallidum PN500]
Length = 1835
Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQ----EQFPELFDE-DHPWNT 116
E+ + + YY L +D YD + +RL L+ ++FP P NT
Sbjct: 58 EILKIRDEIKKYNDSYYNKSQSLISDYQYDMLFKRLATLESQFHQRFPHSKMLGQSPLNT 117
Query: 117 VG 118
VG
Sbjct: 118 VG 119
>gi|257452731|ref|ZP_05618030.1| NAD-dependent DNA ligase [Fusobacterium sp. 3_1_5R]
gi|317059272|ref|ZP_07923757.1| NAD-dependent DNA ligase [Fusobacterium sp. 3_1_5R]
gi|313684948|gb|EFS21783.1| NAD-dependent DNA ligase [Fusobacterium sp. 3_1_5R]
Length = 676
Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+SK E E L K + YY + L +D YD + + L+ L+++ ++ ++
Sbjct: 2 ISKKEKENRREELQKKLQRYSDAYYSQNESLISDYEYDMLLKELEQLEKEL-QIENKSSI 60
Query: 114 WNTVG 118
VG
Sbjct: 61 TQKVG 65
>gi|310778043|ref|YP_003966376.1| DNA ligase, NAD-dependent [Ilyobacter polytropus DSM 2926]
gi|309747366|gb|ADO82028.1| DNA ligase, NAD-dependent [Ilyobacter polytropus DSM 2926]
Length = 677
Score = 52.2 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 79 RLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L +D YD++ + L+ ++++ PE+ DE P VG
Sbjct: 24 VKNESLVSDIEYDKLLKELEEIEKKHPEIKDELSPTRQVG 63
>gi|166030629|ref|ZP_02233458.1| hypothetical protein DORFOR_00295 [Dorea formicigenerans ATCC
27755]
gi|166029631|gb|EDR48388.1| hypothetical protein DORFOR_00295 [Dorea formicigenerans ATCC
27755]
Length = 647
Score = 52.2 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
++ LV++ K YY+ + ++ YD++ + L L+ + + + P VGY
Sbjct: 1 MKELVELLNKASKAYYQDAEEIMSNYEYDKLYDELQELEREL-GITLSNSPTVRVGY 56
>gi|168187649|ref|ZP_02622284.1| DNA ligase, NAD-dependent [Clostridium botulinum C str. Eklund]
gi|169294495|gb|EDS76628.1| DNA ligase, NAD-dependent [Clostridium botulinum C str. Eklund]
Length = 649
Score = 52.2 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
V+ L+K YY D D +D + L L+++ E+ + P VGY
Sbjct: 7 RVKELIKELNEASDKYYNSDKTTMIDKEWDDKFDELKQLEQE-TEVILSNSPTQKVGY 63
>gi|154484656|ref|ZP_02027104.1| hypothetical protein EUBVEN_02373 [Eubacterium ventriosum ATCC
27560]
gi|149734504|gb|EDM50421.1| hypothetical protein EUBVEN_02373 [Eubacterium ventriosum ATCC
27560]
Length = 655
Score = 52.2 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K E ++ LV++ K YY+ N + T+ YD++ + L L+++ + + P
Sbjct: 1 MDKSE---RIKDLVELLNKANKAYYQEANEIMTNFEYDKLYDELVGLEKE-TGMVLSNSP 56
Query: 114 WNTVGY 119
VGY
Sbjct: 57 TVNVGY 62
>gi|154502352|ref|ZP_02039412.1| hypothetical protein RUMGNA_00165 [Ruminococcus gnavus ATCC 29149]
gi|153796977|gb|EDN79397.1| hypothetical protein RUMGNA_00165 [Ruminococcus gnavus ATCC 29149]
Length = 655
Score = 52.2 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD--EDHPWNTV 117
++ LV++ ++ Y + D + ++ YDR+ + L+ L+ EL P V
Sbjct: 5 KKRMQELVELLNRARRAYEQEDTEIMSNYEYDRLYDELEGLER---ELGTTLASSPTVNV 61
Query: 118 GY 119
GY
Sbjct: 62 GY 63
>gi|331086070|ref|ZP_08335153.1| DNA ligase [Lachnospiraceae bacterium 9_1_43BFAA]
gi|330406993|gb|EGG86498.1| DNA ligase [Lachnospiraceae bacterium 9_1_43BFAA]
Length = 653
Score = 52.2 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ ++ LV++ K YY+ + ++ YDR+ + L L+++ + + P
Sbjct: 2 EQKKQRMQELVQLLNQAGKAYYQDAKEIMSNHEYDRLYDELLVLEQEL-GITMANSPTVN 60
Query: 117 VGY 119
VGY
Sbjct: 61 VGY 63
>gi|302387645|ref|YP_003823467.1| DNA ligase, NAD-dependent [Clostridium saccharolyticum WM1]
gi|302198273|gb|ADL05844.1| DNA ligase, NAD-dependent [Clostridium saccharolyticum WM1]
Length = 654
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
M ++ LV + K YY+ + ++ YDR+ + L L+++ + P VGY
Sbjct: 5 MSRMKELVNLLTAAGKAYYQESREIMSNFEYDRLYDELKELEDE-TGVILSKSPTQNVGY 63
>gi|323695090|ref|ZP_08109232.1| DNA ligase [Clostridium symbiosum WAL-14673]
gi|323500845|gb|EGB16765.1| DNA ligase [Clostridium symbiosum WAL-14673]
Length = 663
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
+ LV + YY+ + ++ YDR+ + L L+++ + P VGY
Sbjct: 13 ARIRELVDTLSAAGRAYYQESREIMSNFEYDRLYDELAELEKE-TGIVFAGSPTQNVGY 70
>gi|323485704|ref|ZP_08091041.1| hypothetical protein HMPREF9474_02792 [Clostridium symbiosum
WAL-14163]
gi|323400967|gb|EGA93328.1| hypothetical protein HMPREF9474_02792 [Clostridium symbiosum
WAL-14163]
Length = 663
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
+ LV + YY+ + ++ YDR+ + L L+++ + P VGY
Sbjct: 13 ARIRELVDTLSAAGRAYYQESREIMSNFEYDRLYDELAELEKE-TGIVFAGSPTQNVGY 70
>gi|291165072|gb|ADD81100.1| gp102 [Rhodococcus phage ReqiPoco6]
Length = 541
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 53 SLSKGEA-MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
L+ ++ +++L L H YY +D + TD +D ++ L LQ+++PE
Sbjct: 9 QLTDDQSCGDRIQHLRIRILVHSYLYYEMDQNILTDREFDALAYELVDLQKRYPE 63
>gi|283797409|ref|ZP_06346562.1| DNA ligase, NAD-dependent [Clostridium sp. M62/1]
gi|291074764|gb|EFE12128.1| DNA ligase, NAD-dependent [Clostridium sp. M62/1]
gi|295090074|emb|CBK76181.1| DNA ligase, NAD-dependent [Clostridium cf. saccharolyticum K10]
Length = 684
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
++ L+ I + YY+ + ++ YDR+ + L L+ + + P VGY
Sbjct: 31 ERMKELIGILREAGRAYYQESREVMSNFEYDRLYDELLELERE-TGTVFGNSPTQNVGY 88
>gi|331002925|ref|ZP_08326438.1| DNA ligase [Lachnospiraceae oral taxon 107 str. F0167]
gi|330413218|gb|EGG92592.1| DNA ligase [Lachnospiraceae oral taxon 107 str. F0167]
Length = 650
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
+ LV I K YY + + YD++ + L AL+++ + + P VGY
Sbjct: 4 KQRIRELVDILNKAAKSYYVDAVEIMPNIEYDKLYDELLALEKE-TNVVLSNSPTQNVGY 62
>gi|160881055|ref|YP_001560023.1| DNA ligase, NAD-dependent [Clostridium phytofermentans ISDg]
gi|190359247|sp|A9KPL0|DNLJ_CLOPH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|160429721|gb|ABX43284.1| DNA ligase, NAD-dependent [Clostridium phytofermentans ISDg]
Length = 653
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
+ L ++ + Y + D + ++ YD++ + L L+E+ + P VGY
Sbjct: 5 KQRITQLTELLDEAARVYEQEDREIMSNFEYDKLYDELKKLEEE-TGIVLAGSPTRKVGY 63
>gi|291522304|emb|CBK80597.1| DNA ligase, NAD-dependent [Coprococcus catus GD/7]
Length = 653
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
++ L I K YY D L ++ YD + + L L+++ + + P VGY
Sbjct: 5 ADRIKELTGILNRASKAYYMQDTELMSNYEYDALYDELVQLEKE-TGITLSNSPTIHVGY 63
>gi|210617503|ref|ZP_03291606.1| hypothetical protein CLONEX_03828 [Clostridium nexile DSM 1787]
gi|210149290|gb|EEA80299.1| hypothetical protein CLONEX_03828 [Clostridium nexile DSM 1787]
Length = 653
Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ ++ LV++ K YY+ + ++ YD++ + L AL+++ + P
Sbjct: 2 EQKKQRMQELVQLLNEAGKAYYQGTAEIMSNYEYDKLYDELLALEKEL-GITLASSPTVN 60
Query: 117 VGY 119
VGY
Sbjct: 61 VGY 63
>gi|330800435|ref|XP_003288242.1| hypothetical protein DICPUDRAFT_152457 [Dictyostelium purpureum]
gi|325081750|gb|EGC35255.1| hypothetical protein DICPUDRAFT_152457 [Dictyostelium purpureum]
Length = 835
Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 10/42 (23%), Positives = 21/42 (50%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQ 103
E+ L + YY +D YD++ ++L++L++Q
Sbjct: 51 EINELRNKIKRYNDLYYNKSISEISDYEYDKLFKKLESLEKQ 92
>gi|291562521|emb|CBL41337.1| NAD-dependent DNA ligase (contains BRCT domain type II)
[butyrate-producing bacterium SS3/4]
Length = 169
Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
+ ++ L+ I K YY+ + ++ YDR+ + L L+++ P VGY
Sbjct: 5 IKRMKELIPILSEAAKAYYQESREIMSNFEYDRLYDELLKLEQE-TGTVFAGSPTQKVGY 63
>gi|167745884|ref|ZP_02418011.1| hypothetical protein ANACAC_00578 [Anaerostipes caccae DSM 14662]
gi|167654748|gb|EDR98877.1| hypothetical protein ANACAC_00578 [Anaerostipes caccae DSM 14662]
Length = 651
Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
++ L+ I K YY+ + L ++ YD++ + L L+++ + D P VGY
Sbjct: 7 RMKELIHILSEASKAYYQENRELMSNFEYDKLYDELLELEKE-TDTVLADSPSIHVGY 63
>gi|80159718|ref|YP_398462.1| putative NAD-dependent DNA ligase [Clostridium phage c-st]
gi|78675308|dbj|BAE47730.1| putative NAD-dependent DNA ligase [Clostridium phage c-st]
Length = 649
Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
+ V+ L+K YY D + TD +D E L L+++ + + P VGY
Sbjct: 5 IQRVKKLIKELNDASNKYYNSDKTVMTDKEWDDKYEELKQLEQE-TGVVFSNSPTQKVGY 63
>gi|311900456|dbj|BAJ32864.1| putative DNA ligase [Kitasatospora setae KM-6054]
Length = 718
Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 15/41 (36%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
YY D YD + + A +E PE D P V
Sbjct: 34 YYGDGTTTLGDDEYDALVRAIAAYEEAHPEELLADSPTGKV 74
>gi|308188670|ref|YP_003932801.1| DNA ligase [Pantoea vagans C9-1]
gi|308059180|gb|ADO11352.1| DNA ligase [Pantoea vagans C9-1]
Length = 583
Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 21/61 (34%), Gaps = 7/61 (11%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
+ A E+ L + H YYR D YD + +RL Q F P+
Sbjct: 29 TPNRATEEIRRLQQQLQHWDDAYYRQGQSPVADADYDALQQRLIQWQHCF-------SPY 81
Query: 115 N 115
Sbjct: 82 Q 82
>gi|254456450|ref|ZP_05069879.1| DNA ligase, NAD-dependent [Candidatus Pelagibacter sp. HTCC7211]
gi|207083452|gb|EDZ60878.1| DNA ligase, NAD-dependent [Candidatus Pelagibacter sp. HTCC7211]
Length = 676
Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats.
Identities = 15/66 (22%), Positives = 31/66 (46%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K E + +K+ + ++YY + PL D YD + + +L++++ L + P
Sbjct: 1 MDKKEIQKLYQEKIKLLNKYNQYYYDKNKPLIDDKNYDELKISILSLEKKYNFLASKKSP 60
Query: 114 WNTVGY 119
GY
Sbjct: 61 SEITGY 66
>gi|315652468|ref|ZP_07905453.1| DNA ligase [Eubacterium saburreum DSM 3986]
gi|315485257|gb|EFU75654.1| DNA ligase [Eubacterium saburreum DSM 3986]
Length = 649
Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
++ LV+I K YY + + YD++ + L +L+++ + + P VGY
Sbjct: 4 RKRIKELVEILNKAAKSYYVDAVEIMPNIEYDKLYDELVSLEKE-TNVVLSNSPTQNVGY 62
>gi|218133029|ref|ZP_03461833.1| hypothetical protein BACPEC_00890 [Bacteroides pectinophilus ATCC
43243]
gi|217991902|gb|EEC57906.1| hypothetical protein BACPEC_00890 [Bacteroides pectinophilus ATCC
43243]
Length = 656
Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
++ LV I + YY + ++ YD + + L L+++ P VGY
Sbjct: 11 RIKELVDILNKAGRAYYAQGQEIMSNYEYDALYDELAELEKK-TGCVLASSPTVNVGY 67
>gi|284047072|ref|YP_003397412.1| DNA ligase, NAD-dependent [Conexibacter woesei DSM 14684]
gi|283951293|gb|ADB54037.1| DNA ligase, NAD-dependent [Conexibacter woesei DSM 14684]
Length = 670
Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ L HH+ Y R P D YD + + L AL PE+ +D+P +
Sbjct: 7 EQARALAAQIDHHRGLYARG-APALVDADYDALEDELRALLAASPEVVLDDNPLDR 61
>gi|331270899|ref|YP_004385610.1| putative NAD-dependent DNA ligase [Clostridium botulinum BKT015925]
gi|329127291|gb|AEB77235.1| putative NAD-dependent DNA ligase [Clostridium botulinum BKT015925]
Length = 649
Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
V+ L+K YY D + TD +D ++L L++ + + P VGY
Sbjct: 7 RVKELIKELNQASDKYYNSDETVMTDKEWDDKFDKLKQLEQD-TGIILSNSPTQKVGY 63
>gi|291164964|gb|ADD80993.1| gp102 [Rhodococcus phage ReqiPepy6]
Length = 542
Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
++ L L H YY LD + TD +D ++ L LQ+++PE
Sbjct: 19 RIQQLRMRILVHSYLYYELDQNILTDREFDTLAYELVDLQKRYPE 63
>gi|162452733|ref|YP_001615100.1| DNA ligase [Sorangium cellulosum 'So ce 56']
gi|190359289|sp|A9F3W3|DNLJ_SORC5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|161163315|emb|CAN94620.1| DNA ligase [Sorangium cellulosum 'So ce 56']
Length = 676
Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats.
Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
+ + +E L + ++ YY +P +D +D + + L AL P L
Sbjct: 21 TDPKHKARIEELAERIEKYRASYYAG-HPEISDAAFDALEDELRALDPAHPVLARVGSAS 79
>gi|153855784|ref|ZP_01996785.1| hypothetical protein DORLON_02806 [Dorea longicatena DSM 13814]
gi|149751911|gb|EDM61842.1| hypothetical protein DORLON_02806 [Dorea longicatena DSM 13814]
Length = 647
Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats.
Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
++ LV + + YY+ + ++ YDR+ + L L+++ + + P VGY
Sbjct: 1 MKELVSLLNKASRAYYQEAQEIMSNYEYDRLYDELKELEDEL-GITLSNSPTVNVGY 56
>gi|225419696|ref|ZP_03761999.1| hypothetical protein CLOSTASPAR_06034 [Clostridium asparagiforme
DSM 15981]
gi|225041660|gb|EEG51906.1| hypothetical protein CLOSTASPAR_06034 [Clostridium asparagiforme
DSM 15981]
Length = 654
Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats.
Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ + ++ LV + K YY+ + ++ YDR+ + L AL+ + + P
Sbjct: 2 EDRIERMKELVSLLSKAGKAYYQESREIMSNFEYDRLYDELTALERE-TGVTLSGSPTKR 60
Query: 117 VGY 119
VGY
Sbjct: 61 VGY 63
>gi|111226523|ref|XP_001134548.1| BRCT domain-containing protein [Dictyostelium discoideum AX4]
gi|90970627|gb|EAS66865.1| BRCT domain-containing protein [Dictyostelium discoideum AX4]
Length = 843
Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
L + YY +D YD++ +RL+ L+++F
Sbjct: 71 LRNKINRYNDLYYNKSKSEISDFEYDKLFKRLEILEKKF 109
>gi|325662259|ref|ZP_08150874.1| hypothetical protein HMPREF0490_01612 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325471511|gb|EGC74732.1| hypothetical protein HMPREF0490_01612 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 260
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ ++ LV++ K YY+ + ++ YDR+ + L L+++ + + P
Sbjct: 2 EQKKQRMQELVQLLNQAGKAYYQDAKEIMSNHEYDRLYDELLVLEQEL-GITMANSPTVN 60
Query: 117 VGY 119
VGY
Sbjct: 61 VGY 63
>gi|325856672|ref|ZP_08172310.1| NAD-dependent DNA ligase OB-fold domain [Prevotella denticola CRIS
18C-A]
gi|325483386|gb|EGC86361.1| NAD-dependent DNA ligase OB-fold domain [Prevotella denticola CRIS
18C-A]
Length = 684
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E++ LVK YY L TD +D +RL L+EQ + D P V
Sbjct: 3 KEIQSLVKQLNAASDAYYNGREELMTDYEWDAAFDRLKKLEEQ-TGIVLPDSPTQNV 58
>gi|229825369|ref|ZP_04451438.1| hypothetical protein GCWU000182_00723 [Abiotrophia defectiva ATCC
49176]
gi|229790373|gb|EEP26487.1| hypothetical protein GCWU000182_00723 [Abiotrophia defectiva ATCC
49176]
Length = 664
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ ++ L+ + K YY + ++ YD++ + L+AL+ + +
Sbjct: 1 MDINSKKQRMKELIDVLDKAAKAYYAESTEIMSNAEYDKLYDELEALENE-TGIVLAGSL 59
Query: 114 WNTVGY 119
VGY
Sbjct: 60 TKKVGY 65
>gi|327313400|ref|YP_004328837.1| NAD-dependent DNA ligase domain-containing protein [Prevotella
denticola F0289]
gi|326944680|gb|AEA20565.1| NAD-dependent DNA ligase domain protein [Prevotella denticola
F0289]
Length = 684
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E++ LVK YY L TD +D +RL L+EQ + D P V
Sbjct: 3 KEIQSLVKQLNAASDAYYNGREELMTDYEWDAAFDRLKKLEEQ-TGIVLPDSPTQNV 58
>gi|260587930|ref|ZP_05853843.1| DNA ligase, NAD-dependent [Blautia hansenii DSM 20583]
gi|331084525|ref|ZP_08333626.1| DNA ligase [Lachnospiraceae bacterium 6_1_63FAA]
gi|260541457|gb|EEX22026.1| DNA ligase, NAD-dependent [Blautia hansenii DSM 20583]
gi|330401233|gb|EGG80824.1| DNA ligase [Lachnospiraceae bacterium 6_1_63FAA]
Length = 650
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
M ++ L+K+ K YY+ D + ++ YD++ + L L+ + + P +VGY
Sbjct: 4 MKRMKELLKLLTEASKAYYQEDREIMSNFEYDKLYDELVQLERE-TGVTLAGSPTASVGY 62
>gi|301168580|emb|CBW28170.1| DNA ligase [Bacteriovorax marinus SJ]
Length = 628
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 21/59 (35%), Gaps = 10/59 (16%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT-VG 118
++ L K HH+ YY D YD++ + L L D P VG
Sbjct: 4 KRIQELEKEIEHHKVLYY-KGQTEIPDHEYDKLEDELREL--------SPDSPILKMVG 53
>gi|300785073|ref|YP_003765364.1| DNA ligase (NAD+) [Amycolatopsis mediterranei U32]
gi|299794587|gb|ADJ44962.1| DNA ligase (NAD+) [Amycolatopsis mediterranei U32]
Length = 663
Score = 49.5 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
A + L + YYR +PL D YD V + L +L E PE + +P + VG
Sbjct: 3 AQERIPELADRITVLRDAYYRG-SPLVADAEYDAVEDELRSLIEAHPEFTPDPNPLDQVG 61
>gi|325269002|ref|ZP_08135623.1| NAD-dependent DNA ligase LigA [Prevotella multiformis DSM 16608]
gi|324988623|gb|EGC20585.1| NAD-dependent DNA ligase LigA [Prevotella multiformis DSM 16608]
Length = 684
Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E++ LV YY L TD +D +RL L+EQ + D P V
Sbjct: 3 KEIQRLVDRLNAASDAYYNGREELMTDYEWDAAFDRLKKLEEQ-TGIVLPDSPTQNV 58
>gi|325261872|ref|ZP_08128610.1| DNA ligase, NAD-dependent [Clostridium sp. D5]
gi|324033326|gb|EGB94603.1| DNA ligase, NAD-dependent [Clostridium sp. D5]
Length = 651
Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 14/65 (21%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD--EDHPW 114
+ ++ LV++ ++ Y + D + ++ YD++ + L L++ EL P
Sbjct: 2 ADKKNRMQELVELLNRARRSYEQEDTEIMSNYEYDKLYDELLGLEQ---ELGTTLASSPT 58
Query: 115 NTVGY 119
VGY
Sbjct: 59 INVGY 63
>gi|281420079|ref|ZP_06251078.1| putative DNA ligase [Prevotella copri DSM 18205]
gi|281405879|gb|EFB36559.1| putative DNA ligase [Prevotella copri DSM 18205]
Length = 656
Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
E +++++ LV+ YY L TD +D + ++L L+E+ E + P N
Sbjct: 2 EEKLLQMKSLVERLNQASDSYYNGKGELMTDYEWDALFDQLKRLEEETGE-ILPNSPTNR 60
Query: 117 V 117
V
Sbjct: 61 V 61
>gi|317050124|ref|YP_004117772.1| DNA ligase (NAD(+)) [Pantoea sp. At-9b]
gi|316951741|gb|ADU71216.1| DNA ligase (NAD(+)) [Pantoea sp. At-9b]
Length = 589
Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
A E+ L H YYR +D YD +S+RL +Q+ F D
Sbjct: 30 AGQEIAQLTTQLRHWDDAYYRQGLNPVSDADYDSLSQRL----QQWQHCFTPD 78
>gi|42527046|ref|NP_972144.1| DNA ligase, NAD-dependent [Treponema denticola ATCC 35405]
gi|81412203|sp|Q73MH0|DNLJ_TREDE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|41817470|gb|AAS12055.1| DNA ligase, NAD-dependent [Treponema denticola ATCC 35405]
Length = 645
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQ 103
+ L K HQ YY P +D +D + + L AL Q
Sbjct: 4 EKRILDLEKTIKKHQDLYYNA-QPEISDAEFDALWDELKALDPQ 46
>gi|295698750|ref|YP_003603405.1| DNA ligase, NAD-dependent [Candidatus Riesia pediculicola USDA]
gi|291157368|gb|ADD79813.1| DNA ligase, NAD-dependent [Candidatus Riesia pediculicola USDA]
Length = 593
Score = 48.7 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 21/50 (42%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQ 103
+ K + L K HQ Y+ L D YD + +LD ++++
Sbjct: 1 MKKKNIHQYLSSLRKKIKKHQYLYHILGKSEIPDFEYDLMIRKLDRIEKE 50
>gi|160935782|ref|ZP_02083157.1| hypothetical protein CLOBOL_00672 [Clostridium bolteae ATCC
BAA-613]
gi|158441526|gb|EDP19236.1| hypothetical protein CLOBOL_00672 [Clostridium bolteae ATCC
BAA-613]
Length = 651
Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ + ++ LV I K YY+ + ++ YD++ + L +L+++ + P
Sbjct: 2 EDRIQRMKELVSILREAGKAYYQESREIMSNFEYDKLYDELVSLEKE-TGVTLSGSPSQQ 60
Query: 117 VGY 119
VGY
Sbjct: 61 VGY 63
>gi|313608254|gb|EFR84261.1| DNA ligase [Listeria monocytogenes FSL F2-208]
Length = 66
Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQ 101
E L+ I + YY +DNP D YD+ + L ++
Sbjct: 5 KKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIE 46
>gi|328869954|gb|EGG18329.1| BRCT domain-containing protein [Dictyostelium fasciculatum]
Length = 842
Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 9/50 (18%), Positives = 25/50 (50%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S+ + + +++ L + YY + +D YD + ++L+ L++ +
Sbjct: 67 SRNQLVDDIKTLRNDINKYNDLYYNKSETVISDFEYDMLFKKLETLEQLY 116
>gi|326792059|ref|YP_004309880.1| DNA ligase, NAD-dependent [Clostridium lentocellum DSM 5427]
gi|326542823|gb|ADZ84682.1| DNA ligase, NAD-dependent [Clostridium lentocellum DSM 5427]
Length = 649
Score = 48.3 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+A+ ++ LV + Y + D + ++ YD+ + L L+E+ + V
Sbjct: 2 KAVERMKELVDVLGKAAYAYEQEDREVMSNYEYDKFYDELKRLEEE-TGIILAGSVTQKV 60
Query: 118 GY 119
GY
Sbjct: 61 GY 62
>gi|302844550|ref|XP_002953815.1| hypothetical protein VOLCADRAFT_118457 [Volvox carteri f.
nagariensis]
gi|300260923|gb|EFJ45139.1| hypothetical protein VOLCADRAFT_118457 [Volvox carteri f.
nagariensis]
Length = 1842
Score = 48.3 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 10/42 (23%), Positives = 15/42 (35%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQ 103
++ L HH YY +D YD + + L Q
Sbjct: 90 QLRQLESALSHHNDLYYNQQRTEISDAAYDTLKLQYRQLAAQ 131
>gi|325474099|gb|EGC77287.1| hypothetical protein HMPREF9353_01637 [Treponema denticola F0402]
Length = 437
Score = 48.3 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQ 103
+ L K HQ YY P +D +D + + L AL Q
Sbjct: 4 EKRILDLEKTIKKHQDLYYNA-QPEISDAEFDALWDELKALDPQ 46
>gi|92113642|ref|YP_573570.1| NAD-dependent DNA ligase LigB [Chromohalobacter salexigens DSM
3043]
gi|123387489|sp|Q1QXD7|LIGB_CHRSD RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] B
gi|91796732|gb|ABE58871.1| DNA ligase (NAD+) [Chromohalobacter salexigens DSM 3043]
Length = 629
Score = 48.3 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/94 (23%), Positives = 30/94 (31%), Gaps = 1/94 (1%)
Query: 18 NITPAQWKKLLTLEAKFLPNKRAL-ESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKW 76
++ PA + L A L L A ++ + + L +
Sbjct: 12 DMRPAPLRTAAWLRACLLVGLSTLAMPGWASAPPCPQMTPEAMQNDYQALDARIARWDRA 71
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
YYR L DG YD RL E FP L
Sbjct: 72 YYRQGQRLVDDGTYDSAKRRLAHWAECFPLLAKP 105
>gi|302526819|ref|ZP_07279161.1| DNA ligase, NAD-dependent [Streptomyces sp. AA4]
gi|302435714|gb|EFL07530.1| DNA ligase, NAD-dependent [Streptomyces sp. AA4]
Length = 663
Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+ ++ L + + YYR +P D YD + + L L E PEL + +P + V
Sbjct: 2 DVRERIQELADQIVALRDAYYRG-SPAVADAEYDAIEDELRGLIEASPELAPDPNPLDQV 60
Query: 118 G 118
G
Sbjct: 61 G 61
>gi|291525249|emb|CBK90836.1| NAD-dependent DNA ligase (contains BRCT domain type II)
[Eubacterium rectale DSM 17629]
gi|291529292|emb|CBK94878.1| NAD-dependent DNA ligase (contains BRCT domain type II)
[Eubacterium rectale M104/1]
Length = 656
Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + +++ LV+ K YY + + + +D + + L L+++ D P
Sbjct: 1 MENNKIKDKIDELVESLNRASKAYYNGADEIMPNYEWDAMFDELTQLEKE-TGYIRHDSP 59
Query: 114 WNTVGY 119
GY
Sbjct: 60 TQNAGY 65
>gi|238924576|ref|YP_002938092.1| DNA ligase, NAD-dependent [Eubacterium rectale ATCC 33656]
gi|238876251|gb|ACR75958.1| DNA ligase, NAD-dependent [Eubacterium rectale ATCC 33656]
Length = 656
Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + +++ LV+ K YY + + + +D + + L L+++ D P
Sbjct: 1 MENNKIKDKIDELVESLNRASKAYYNGADEIMPNYEWDAMFDELTQLEKE-TGYIRHDSP 59
Query: 114 WNTVGY 119
GY
Sbjct: 60 TQNAGY 65
>gi|166216282|sp|Q83G99|DNLJ_TROWT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
Length = 628
Score = 47.9 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+E L + +K YY+ + L +D YD + L + D + P TVG
Sbjct: 11 RIELLTAQIIAARKAYYQENTSLMSDVEYDALEHELKDAEHA-KGFSDRNSPSLTVG 66
>gi|28572508|ref|NP_789288.1| DNA ligase [Tropheryma whipplei TW08/27]
gi|81629879|sp|Q83HX4|DNLJ_TROW8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|28410640|emb|CAD67026.1| DNA ligase [Tropheryma whipplei TW08/27]
Length = 628
Score = 47.9 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+E L + +K YY+ + L +D YD + L + D + P TVG
Sbjct: 11 RIELLTAQIIAARKAYYQENTSLMSDVEYDALEHELKDAEHA-KGFSDRNSPSLTVG 66
>gi|320537878|ref|ZP_08037793.1| DNA ligase, NAD-dependent [Treponema phagedenis F0421]
gi|320145297|gb|EFW36998.1| DNA ligase, NAD-dependent [Treponema phagedenis F0421]
Length = 648
Score = 47.9 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 65 YLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
L K+ +HQ YY + D +D + + L AL+ PE
Sbjct: 9 ELEKLIRYHQDLYYNKEA-EIPDSEFDALWDELRALE---PE 46
>gi|28493381|ref|NP_787542.1| DNA ligase [Tropheryma whipplei str. Twist]
gi|28476422|gb|AAO44511.1| DNA ligase [Tropheryma whipplei str. Twist]
Length = 634
Score = 47.9 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+E L + +K YY+ + L +D YD + L + D + P TVG
Sbjct: 17 RIELLTAQIIAARKAYYQENTSLMSDVEYDALEHELKDAEHA-KGFSDRNSPSLTVG 72
>gi|327395796|dbj|BAK13218.1| DNA ligase YicF [Pantoea ananatis AJ13355]
Length = 589
Score = 47.9 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLD 98
+ A+ E+ +L + K Y++ L +D YD + +RL+
Sbjct: 27 TSARAVSEIAHLQQQLRQWDKAYFQQGRSLVSDADYDSLQQRLN 70
>gi|225569253|ref|ZP_03778278.1| hypothetical protein CLOHYLEM_05335 [Clostridium hylemonae DSM
15053]
gi|225162052|gb|EEG74671.1| hypothetical protein CLOHYLEM_05335 [Clostridium hylemonae DSM
15053]
Length = 648
Score = 47.9 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL-FDED-HPWNTVGY 119
++ LV+ K YY+ + ++ YDR+ + L +L++ EL P VGY
Sbjct: 1 MQELVEQLNKAGKAYYQDAEEIMSNYEYDRLYDELVSLEK---ELGITLSGSPTANVGY 56
>gi|254371060|ref|ZP_04987062.1| hypothetical protein [Francisella tularensis subsp. tularensis
FSC033]
gi|151569300|gb|EDN34954.1| hypothetical protein FTBG_00816 [Francisella tularensis subsp.
tularensis FSC033]
Length = 643
Score = 47.9 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
Y+ LD P+ +D YD++ L L P+ + + VG
Sbjct: 2 YHTLDKPIISDSDYDKLFRLLQDLVNDNPQFKPINSVLDRVG 43
>gi|304399036|ref|ZP_07380905.1| DNA ligase (NAD(+)) [Pantoea sp. aB]
gi|304353496|gb|EFM17874.1| DNA ligase (NAD(+)) [Pantoea sp. aB]
Length = 583
Score = 47.9 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERL 97
+ A E+ L + H YYR TD YD + +RL
Sbjct: 29 TPVRATEEIGRLQQQLQHWDDAYYRQGQSPVTDTDYDALQQRL 71
>gi|261880335|ref|ZP_06006762.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
gi|270333026|gb|EFA43812.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
Length = 665
Score = 47.5 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 12/56 (21%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
++ LV+ YY + L +D +D + ++L ++++ + D P N V
Sbjct: 6 RMQELVEQLNRASDAYYNGRDELMSDYEWDALFDKLKLIEQETGKTL-PDSPTNRV 60
>gi|320527941|ref|ZP_08029107.1| NAD-dependent DNA ligase OB-fold domain protein [Solobacterium
moorei F0204]
gi|320131567|gb|EFW24131.1| NAD-dependent DNA ligase OB-fold domain protein [Solobacterium
moorei F0204]
Length = 658
Score = 47.5 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+ +V YY TD +D + +RL L+E+ + ED P V
Sbjct: 9 MRQMVAQLNQAADAYYDGKAEQMTDYEWDALFDRLKKLEEE-TGVVLEDSPTMKV 62
>gi|291619488|ref|YP_003522230.1| YicF [Pantoea ananatis LMG 20103]
gi|291154518|gb|ADD79102.1| YicF [Pantoea ananatis LMG 20103]
Length = 568
Score = 47.2 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLD 98
+ A+ E+ +L + K Y++ L +D YD + +RL+
Sbjct: 6 TSARAVNEIAHLQQQLRQWDKAYFQQGRSLVSDADYDSLQQRLN 49
>gi|271965050|ref|YP_003339246.1| DNA ligase (NAD(+)) [Streptosporangium roseum DSM 43021]
gi|270508225|gb|ACZ86503.1| DNA ligase (NAD(+)) [Streptosporangium roseum DSM 43021]
Length = 696
Score = 47.2 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 10/41 (24%), Positives = 15/41 (36%)
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
YY D YDR+ + A + + P+ P V
Sbjct: 30 YYGDGTSTLDDDAYDRLVRGIQAYEAEHPDEVLPTSPTGKV 70
>gi|148550043|ref|YP_001270145.1| NAD-dependent DNA ligase LigB [Pseudomonas putida F1]
gi|257096559|sp|A5WA01|LIGB_PSEP1 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] B
gi|148514101|gb|ABQ80961.1| DNA ligase (NAD(+)) [Pseudomonas putida F1]
Length = 566
Score = 46.8 bits (110), Expect = 9e-04, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 28/62 (45%)
Query: 43 SWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQE 102
+ L +A S +A EV L + Y+R L D LYD+ ERL+ LQ+
Sbjct: 15 APLARAASCPQWSPQQAKAEVAQLRATLARWDEHYHRQGIALVADELYDQSRERLNHLQQ 74
Query: 103 QF 104
F
Sbjct: 75 CF 76
>gi|332297848|ref|YP_004439770.1| DNA ligase [Treponema brennaborense DSM 12168]
gi|332180951|gb|AEE16639.1| DNA ligase [Treponema brennaborense DSM 12168]
Length = 646
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL--FDEDH 112
V+ L + +Q YY + +D +D + + L L P L D
Sbjct: 6 ASRVQELAALIEKYQDSYYNGEA-EISDAEFDALWDELKQLDPAHPVLHRIGSDS 59
>gi|317499031|ref|ZP_07957312.1| DNA ligase [Lachnospiraceae bacterium 5_1_63FAA]
gi|316893681|gb|EFV15882.1| DNA ligase [Lachnospiraceae bacterium 5_1_63FAA]
Length = 651
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 12/58 (20%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
++ L+ K YY+ + + ++ YD++ + L L+++ + P VGY
Sbjct: 6 RMKELIHTLNEAGKAYYQQNKEVMSNLEYDKMYDELLELEKK-TNTVLSNSPTIHVGY 62
>gi|229593084|ref|YP_002875203.1| NAD-dependent DNA ligase LigB [Pseudomonas fluorescens SBW25]
gi|257096558|sp|C3K3F7|LIGB_PSEFS RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] B
gi|229364950|emb|CAY53062.1| putative exported DNA-ligase protein [Pseudomonas fluorescens
SBW25]
Length = 554
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE-LFDEDHP 113
EA V L + Y+RL +D LYD+ +RL + FP + P
Sbjct: 24 DEARAHVSTLAEQIRQWDDSYHRLGQSPVSDELYDQARQRLAQWHQCFPAPTATPNTP 81
>gi|297196402|ref|ZP_06913800.1| DNA ligase [Streptomyces pristinaespiralis ATCC 25486]
gi|197720877|gb|EDY64785.1| DNA ligase [Streptomyces pristinaespiralis ATCC 25486]
Length = 715
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 76 WYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
YY D YDR+ + A +++ P+ P V
Sbjct: 34 AYYETGESTLDDDAYDRLVRGIAAYEQEHPDETSPASPTGKV 75
>gi|168186072|ref|ZP_02620707.1| DNA ligase, NAD-dependent [Clostridium botulinum C str. Eklund]
gi|169295952|gb|EDS78085.1| DNA ligase, NAD-dependent [Clostridium botulinum C str. Eklund]
Length = 664
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 65 YLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV+ YY LDNP +D YD+ ++L L+++ L P VG
Sbjct: 10 ELVEELNKLAYEYYVLDNPSVSDKDYDKKYDKLVELEKE-TGLVLPYSPTQRVG 62
>gi|149924280|ref|ZP_01912652.1| DNA ligase, NAD-dependent [Plesiocystis pacifica SIR-1]
gi|149814860|gb|EDM74426.1| DNA ligase, NAD-dependent [Plesiocystis pacifica SIR-1]
Length = 706
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 28/77 (36%), Gaps = 8/77 (10%)
Query: 36 PNKRALESWLDKAKKVTSLSKGEAMIEV-----EYLVKIALHHQKWYYRLDNPLFTDGLY 90
P + ++S A V+ L + + L + Y+ L P D +Y
Sbjct: 3 PTAKQVDSA---APDVSGLDTAAIEAGLPSFDADTLAALIRRTNHEYWNLHAPTIPDPVY 59
Query: 91 DRVSERLDALQEQFPEL 107
DR+ E L L P L
Sbjct: 60 DRLVEGLRRLDPAHPVL 76
>gi|329937546|ref|ZP_08287104.1| DNA ligase [Streptomyces griseoaurantiacus M045]
gi|329303422|gb|EGG47309.1| DNA ligase [Streptomyces griseoaurantiacus M045]
Length = 697
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 11/42 (26%), Positives = 14/42 (33%)
Query: 76 WYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
YY D YDR+ + A + PE P V
Sbjct: 21 AYYADGTSALDDEAYDRLVRGIAAWEADHPEQVLPGSPTGKV 62
>gi|118444950|ref|YP_878905.1| NAD-dependent DNA ligase LigA [Clostridium novyi NT]
gi|166215579|sp|A0Q2Q3|DNLJ_CLONN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|118135406|gb|ABK62450.1| DNA ligase, NAD-dependent [Clostridium novyi NT]
Length = 664
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 65 YLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
LV+ YY LDNP +D YD+ ++L L+++ L P VG
Sbjct: 10 ELVEELNKLAYEYYVLDNPSVSDKDYDKKYDKLVELEKE-TGLVLPYSPTQRVG 62
>gi|167766753|ref|ZP_02438806.1| hypothetical protein CLOSS21_01259 [Clostridium sp. SS2/1]
gi|167711507|gb|EDS22086.1| hypothetical protein CLOSS21_01259 [Clostridium sp. SS2/1]
Length = 651
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 12/58 (20%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
++ L+ K YY+ + + ++ YD++ + L L+++ + P VGY
Sbjct: 6 RMKELIHTLNEAGKAYYQQNKEVMSNLEYDKMYDELLELEKK-TNTVLSNSPTIHVGY 62
>gi|257463090|ref|ZP_05627491.1| NAD-dependent DNA ligase [Fusobacterium sp. D12]
gi|317060689|ref|ZP_07925174.1| DNA ligase [Fusobacterium sp. D12]
gi|313686365|gb|EFS23200.1| DNA ligase [Fusobacterium sp. D12]
Length = 673
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
L K + YY + L +D YD + + L+ L+ + ++ DE TVG
Sbjct: 14 LQKKLRSYSDAYYSQNESLISDYEYDMLLKELETLEAEL-QIADETSITQTVG 65
>gi|315608256|ref|ZP_07883246.1| NAD-dependent DNA ligase LigA [Prevotella buccae ATCC 33574]
gi|315250037|gb|EFU30036.1| NAD-dependent DNA ligase LigA [Prevotella buccae ATCC 33574]
Length = 662
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+++ + ++ V+ YY L TD +D + +RL L+E+ E D P
Sbjct: 1 MTEDK-RQQMRQFVERLNAASDAYYNGQPELMTDYEWDALFDRLRQLEEETGETL-PDSP 58
Query: 114 WNTV 117
V
Sbjct: 59 TAKV 62
>gi|304372912|ref|YP_003856121.1| DNA ligase, NAD-dependent [Mycoplasma hyorhinis HUB-1]
gi|304309103|gb|ADM21583.1| DNA ligase, NAD-dependent [Mycoplasma hyorhinis HUB-1]
Length = 673
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED---- 111
+ +A ++E L + Y+ LD P+ D +YD+ +L L++++ LF +
Sbjct: 12 EKQAKKQIEELRQKLHLWNHHYFDLDIPIVDDLVYDQELNKLKKLEKKYFYLFTLEENNA 71
Query: 112 HPWNTVG 118
P VG
Sbjct: 72 SPTQIVG 78
>gi|291060005|gb|ADD72740.1| DNA ligase, NAD-dependent [Treponema pallidum subsp. pallidum str.
Chicago]
Length = 840
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
A V+ L K+ LHHQ YY ++ +D +D + E L L P L
Sbjct: 21 AQRRVQELEKLILHHQDRYYNAES-DISDDAFDALWEELARLDPGNPLLKAIGSDSQR 77
>gi|15639622|ref|NP_219072.1| DNA ligase (lig) [Treponema pallidum subsp. pallidum str. Nichols]
gi|189025860|ref|YP_001933632.1| DNA ligase [Treponema pallidum subsp. pallidum SS14]
gi|6014987|sp|O83642|DNLJ_TREPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|254781445|sp|B2S3M4|DNLJ_TREPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|3322933|gb|AAC65609.1| DNA ligase (lig) [Treponema pallidum subsp. pallidum str. Nichols]
gi|189018435|gb|ACD71053.1| DNA ligase [Treponema pallidum subsp. pallidum SS14]
Length = 823
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
A V+ L K+ LHHQ YY ++ +D +D + E L L P L
Sbjct: 4 AQRRVQELEKLILHHQDRYYNAES-DISDDAFDALWEELARLDPGNPLLKAIGSDSQR 60
>gi|330723500|gb|AEC45870.1| DNA ligase, NAD-dependent [Mycoplasma hyorhinis MCLD]
Length = 673
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED---- 111
+ +A ++E L + Y+ LD P+ D +YD+ +L L++++ LF +
Sbjct: 12 EKQAKKQIEELRQKLHLWNHHYFDLDIPIVDDLVYDQELNKLKKLEKKYFYLFTLEENNA 71
Query: 112 HPWNTVG 118
P VG
Sbjct: 72 SPTQIVG 78
>gi|260438468|ref|ZP_05792284.1| DNA ligase, NAD-dependent [Butyrivibrio crossotus DSM 2876]
gi|292809057|gb|EFF68262.1| DNA ligase, NAD-dependent [Butyrivibrio crossotus DSM 2876]
Length = 649
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K E ++ L+ I K YY + + ++ YDR+ + L L+ + + P
Sbjct: 1 MDKSE---RIKELIDILNEAGKVYYSGTDEIMSNFEYDRLYDELVELENE-TGIHMSGSP 56
Query: 114 WNTVGY 119
+ VGY
Sbjct: 57 TSKVGY 62
>gi|315924259|ref|ZP_07920483.1| NAD-dependent DNA ligase LigA [Pseudoramibacter alactolyticus ATCC
23263]
gi|315622420|gb|EFV02377.1| NAD-dependent DNA ligase LigA [Pseudoramibacter alactolyticus ATCC
23263]
Length = 654
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 11/66 (16%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 53 SLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDH 112
++++ ++ L+ + YY L ++ +D + + L L+++ D
Sbjct: 2 TMAELSINQQMADLIGKINAASEAYYGGREELMSNYEWDALFDALIRLEKK-AGYALPDS 60
Query: 113 PWNTVG 118
P VG
Sbjct: 61 PTQRVG 66
>gi|227874422|ref|ZP_03992603.1| DNA ligase (NAD(+)) [Oribacterium sinus F0268]
gi|227839738|gb|EEJ50187.1| DNA ligase (NAD(+)) [Oribacterium sinus F0268]
Length = 692
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 14/77 (18%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 43 SWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQE 102
S +++ + K +++ ++ L+ K YY+ + ++ YD+ + L +L++
Sbjct: 25 SKIEENSGLQEADKQDSIARMKELISFLNEAAKAYYQEGREIVSNLEYDKAYDTLLSLEK 84
Query: 103 QFPELFDEDHPWNTVGY 119
+ + P VGY
Sbjct: 85 E-SGVVLSGSPSQNVGY 100
>gi|288802753|ref|ZP_06408191.1| DNA ligase [Prevotella melaninogenica D18]
gi|288334903|gb|EFC73340.1| DNA ligase [Prevotella melaninogenica D18]
Length = 673
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E++ LV YY + L TD +D ++L L+E+ + D P V
Sbjct: 3 KEIQSLVNQLNAASDAYYNGRDELMTDYEWDAAFDKLKKLEEE-TGIILPDSPTQNV 58
>gi|291529755|emb|CBK95341.1| NAD-dependent DNA ligase (contains BRCT domain type II)
[Eubacterium rectale M104/1]
Length = 709
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ LV YY + + ++ +D + ++L L+E+ + D P + VG
Sbjct: 6 RMKELVNKLNEASNAYYNGKDEIMSNHEWDTMFDQLAQLEEE-TGIILPDSPTSKVG 61
>gi|328947954|ref|YP_004365291.1| DNA ligase [Treponema succinifaciens DSM 2489]
gi|328448278|gb|AEB13994.1| DNA ligase [Treponema succinifaciens DSM 2489]
Length = 651
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
Query: 49 KKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL- 107
K K ++ + L K+ +Q YY + +D +D++ + L +L P L
Sbjct: 11 KANDEALKKSSVKRISELEKLIEKYQASYYNGEA-EISDAEFDKLWDELKSLDSANPILH 69
Query: 108 -FDEDH 112
D
Sbjct: 70 KVGADS 75
>gi|326201860|ref|ZP_08191730.1| DNA ligase, NAD-dependent [Clostridium papyrosolvens DSM 2782]
gi|325987655|gb|EGD48481.1| DNA ligase, NAD-dependent [Clostridium papyrosolvens DSM 2782]
Length = 657
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 12/57 (21%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
++ ++I K YY+ + + + YD++ + L L+++ + + P VGY
Sbjct: 8 MKDKIEILNKAAKAYYQENTEIMPNIEYDKLYDELLELEKE-TGVVLSNSPSIHVGY 63
>gi|302345294|ref|YP_003813647.1| DNA ligase (NAD+) [Prevotella melaninogenica ATCC 25845]
gi|302149440|gb|ADK95702.1| DNA ligase (NAD+) [Prevotella melaninogenica ATCC 25845]
Length = 673
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E++ LV YY + L TD +D ++L L+E+ + D P V
Sbjct: 3 KEIQSLVNQLNAASDAYYNGRDELMTDYEWDAAFDKLKKLEEE-TGIILPDSPTQNV 58
>gi|260588405|ref|ZP_05854318.1| DNA ligase, NAD-dependent [Blautia hansenii DSM 20583]
gi|260541279|gb|EEX21848.1| DNA ligase, NAD-dependent [Blautia hansenii DSM 20583]
Length = 644
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 10/58 (17%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
M E+ +++ YY+ + ++ YD++ ++L ++++ + D P +V
Sbjct: 1 MNEMRAIIEQLKAANVAYYQESREIMSNYDYDKLYDKLVDMEKE-TGVIYSDSPTQSV 57
>gi|220929395|ref|YP_002506304.1| DNA ligase, NAD-dependent [Clostridium cellulolyticum H10]
gi|254781296|sp|B8I3I1|DNLJ_CLOCE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|219999723|gb|ACL76324.1| DNA ligase, NAD-dependent [Clostridium cellulolyticum H10]
Length = 657
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 12/57 (21%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
++ ++I K YY+ + + ++ YD++ + L L+++ + + P VGY
Sbjct: 8 MKDKIEILDRAAKAYYQENTEIMSNIEYDKLYDELLELEKE-TGVVLSNSPSIHVGY 63
>gi|299142918|ref|ZP_07036045.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Prevotella
oris C735]
gi|298575647|gb|EFI47526.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Prevotella
oris C735]
Length = 657
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 9/59 (15%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQ----EQFPELFDEDHPWNTV 117
+ L+ + YY L TD +D + +++ L+ ++FP D P N V
Sbjct: 1 MRELIDLLNRAADAYYNGQGELMTDYEWDAMFDQVKQLETETGQKFP-----DSPTNRV 54
>gi|256377071|ref|YP_003100731.1| DNA ligase, NAD-dependent [Actinosynnema mirum DSM 43827]
gi|255921374|gb|ACU36885.1| DNA ligase, NAD-dependent [Actinosynnema mirum DSM 43827]
Length = 674
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
A + L + + YYR +PL D YD + L +L PEL + +P + VG
Sbjct: 11 AEERIRDLADRVVSLRDAYYRG-SPLVADAEYDATEDELRSLIAANPELTPDPNPLDQVG 69
>gi|317502616|ref|ZP_07960737.1| NAD-dependent DNA ligase LigA [Prevotella salivae DSM 15606]
gi|315666297|gb|EFV05843.1| NAD-dependent DNA ligase LigA [Prevotella salivae DSM 15606]
Length = 665
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 9/59 (15%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQ----EQFPELFDEDHPWNTV 117
+ LV YY +D +D + + + L+ +QFP D P N V
Sbjct: 9 MRELVDKLNSAANAYYNGQGEQMSDYEWDALFDEVKHLEKETGQQFP-----DSPTNRV 62
>gi|281424041|ref|ZP_06254954.1| putative DNA ligase [Prevotella oris F0302]
gi|281401824|gb|EFB32655.1| putative DNA ligase [Prevotella oris F0302]
Length = 665
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 9/65 (13%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQ----EQFPELFDEDH 112
+ + ++ LV + YY L TD +D + +++ L+ ++FP D
Sbjct: 3 EDKLRKMRELVDLLNRAADAYYNGQGELMTDYEWDAMFDQVKQLETETGQKFP-----DS 57
Query: 113 PWNTV 117
P N V
Sbjct: 58 PTNRV 62
>gi|170719684|ref|YP_001747372.1| NAD-dependent DNA ligase LigB [Pseudomonas putida W619]
gi|257096560|sp|B1J2Z7|LIGB_PSEPW RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] B
gi|169757687|gb|ACA71003.1| DNA ligase (NAD(+)) [Pseudomonas putida W619]
Length = 567
Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 25/59 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
S +A EV L + Y+R L D LYD+ L LQ+ F + F + P
Sbjct: 27 STKQARTEVAQLRATLANWDDHYHRQGIALVADELYDQARHHLLHLQQCFGQEFTDPSP 85
>gi|242279308|ref|YP_002991437.1| DNA ligase (NAD(+)) [Desulfovibrio salexigens DSM 2638]
gi|242122202|gb|ACS79898.1| DNA ligase (NAD(+)) [Desulfovibrio salexigens DSM 2638]
Length = 614
Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL--FDEDHPWNTV 117
E++ LV + H + Y R P +D YD ++E+L L + P L + ++ V
Sbjct: 6 KEIKDLVALLEKHNEAY-RRGMPTISDARYDELTEQLRDLDPENPFLTNVEPENFSEKV 63
>gi|126347877|emb|CAJ89597.1| putative DNA ligase [Streptomyces ambofaciens ATCC 23877]
Length = 702
Score = 44.8 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 85 FTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
D YDR++ + A + + P+ D P V
Sbjct: 39 LDDATYDRLARGIAAWEAEHPDEVLPDSPTGKV 71
>gi|282858246|ref|ZP_06267432.1| NAD-dependent DNA ligase domain protein [Prevotella bivia
JCVIHMP010]
gi|282588955|gb|EFB94074.1| NAD-dependent DNA ligase domain protein [Prevotella bivia
JCVIHMP010]
Length = 678
Score = 44.8 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+++ + I +E LV YY TD +D +RL AL+E+ E + P
Sbjct: 1 MTEDKHKI-MEALVLQLNEASDAYYNGKGEAMTDFEWDAAFDRLKALEEELGE-VLPNSP 58
Query: 114 WNTV 117
N+V
Sbjct: 59 TNSV 62
>gi|260591596|ref|ZP_05857054.1| putative DNA ligase [Prevotella veroralis F0319]
gi|260536396|gb|EEX19013.1| putative DNA ligase [Prevotella veroralis F0319]
Length = 676
Score = 44.8 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
E++ LV+ YY + T+ +D +RL L+E+ + D P V
Sbjct: 4 EIQSLVEQLNAASDAYYNGREEIMTNYEWDAAFDRLKKLEEE-TGIILPDSPTQNV 58
>gi|331092462|ref|ZP_08341286.1| DNA ligase [Lachnospiraceae bacterium 2_1_46FAA]
gi|330401202|gb|EGG80794.1| DNA ligase [Lachnospiraceae bacterium 2_1_46FAA]
Length = 653
Score = 44.5 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 12/60 (20%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
++ L+ + K YY+ + ++ YD++ + L L+++ + + P VGY
Sbjct: 5 KKRMQELIALLNEAGKAYYQGATEIMSNFQYDKLYDELAELEKEL-NVTLSNSPTVNVGY 63
>gi|282877678|ref|ZP_06286493.1| NAD-dependent DNA ligase domain protein [Prevotella buccalis ATCC
35310]
gi|281300250|gb|EFA92604.1| NAD-dependent DNA ligase domain protein [Prevotella buccalis ATCC
35310]
Length = 657
Score = 44.5 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+++ LV+ YY TD +D + L L+++ L D P V
Sbjct: 6 RQKMQQLVEELNRASDNYYSGRTESMTDFEWDAKFDELKRLEQE-SGLVLPDSPTTNV 62
>gi|313500944|gb|ADR62310.1| LigB [Pseudomonas putida BIRD-1]
Length = 566
Score = 44.5 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 27/60 (45%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
L +A + +A EV L + Y+R L D LYD+ ERL+ LQ+ F
Sbjct: 17 LARAASCPHWNPQQAEAEVAQLRATLARWDEHYHRQGIALVADELYDQSRERLNHLQQCF 76
>gi|242241341|ref|YP_002989522.1| NAD-dependent DNA ligase LigB [Dickeya dadantii Ech703]
gi|242133398|gb|ACS87700.1| DNA ligase (NAD(+)) [Dickeya dadantii Ech703]
Length = 575
Score = 44.5 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 19/46 (41%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
A E+E L + YY D YD++ +RL+ Q F
Sbjct: 34 AEQEMERLGHQLAVWDRAYYGAGESQIDDHTYDQLRKRLETWQACF 79
>gi|271502618|ref|YP_003335644.1| DNA ligase [Dickeya dadantii Ech586]
gi|270346173|gb|ACZ78938.1| DNA ligase (NAD(+)) [Dickeya dadantii Ech586]
Length = 561
Score = 44.5 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 20/51 (39%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERL 97
KA+ + S A E+ L + YY D +YD++ + L
Sbjct: 20 KAEPCPAWSPARAEQEIARLGQQLTQWDNAYYDRGQSPVDDQVYDQLRQTL 70
>gi|288925794|ref|ZP_06419725.1| DNA ligase [Prevotella buccae D17]
gi|288337449|gb|EFC75804.1| DNA ligase [Prevotella buccae D17]
Length = 654
Score = 44.1 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+ V+ YY L TD +D + +RL L+E+ E D P V
Sbjct: 1 MRQFVERLNAASDAYYNGQPELMTDYEWDALFDRLRQLEEETGETL-PDSPTAKV 54
>gi|229587518|ref|YP_002860556.1| hypothetical protein CLJ_0249 [Clostridium botulinum Ba4 str. 657]
gi|229260200|gb|ACQ51237.1| hypothetical protein CLJ_0249 [Clostridium botulinum Ba4 str. 657]
Length = 125
Score = 44.1 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 18/79 (22%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 31 EAKFLPNKRALESWLDKAKKVTSLSKGEAMIEV-EYLVKIALHHQKWYYRLDNPLFTDGL 89
++ ++ +++ + + + +A+IE+ + L H YYRL++ L D
Sbjct: 4 QSNLFDLLHTSKNIIEEKQVNKNDTHKKAIIELINKRRRQVLVHSCTYYRLNDSLIDDYT 63
Query: 90 YDRVSERLDALQEQFPELF 108
YD+ + L+ LQ+ +P+L
Sbjct: 64 YDKWARELENLQDMYPDLL 82
>gi|156936180|ref|YP_001440096.1| NAD-dependent DNA ligase LigB [Cronobacter sakazakii ATCC BAA-894]
gi|166226363|sp|A7MQB5|LIGB_ENTS8 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] B
gi|156534434|gb|ABU79260.1| hypothetical protein ESA_04079 [Cronobacter sakazakii ATCC BAA-894]
Length = 561
Score = 44.1 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 23/59 (38%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ +A EV L + Y+ +D +YD + +RL A Q F D P
Sbjct: 25 TPQQAQQEVAALENQLTRWDEAYWLHGENKVSDAVYDSMRQRLRAWQTCFALPVFNDAP 83
>gi|159487072|ref|XP_001701559.1| predicted protein [Chlamydomonas reinhardtii]
gi|158271500|gb|EDO97317.1| predicted protein [Chlamydomonas reinhardtii]
Length = 623
Score = 44.1 bits (103), Expect = 0.007, Method: Composition-based stats.
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
++ L H++ Y+ P +D YD + R L + + ED
Sbjct: 1 MKLLEAALTKHRELYFNQ-TPEISDAAYDELKRRFRDLAARLRGVAAED 48
>gi|297196946|ref|ZP_06914343.1| DNA ligase, NAD-dependent [Streptomyces sviceus ATCC 29083]
gi|297146537|gb|EDY59948.2| DNA ligase, NAD-dependent [Streptomyces sviceus ATCC 29083]
Length = 712
Score = 44.1 bits (103), Expect = 0.007, Method: Composition-based stats.
Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 3/69 (4%)
Query: 49 KKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF 108
+ G A + V+ A+ YY D YDR+ + A + P+
Sbjct: 21 TPAAEIMDGAAYAQA---VEDAVKASAAYYEGGTSALDDDAYDRLVRGIAAWETDHPDQV 77
Query: 109 DEDHPWNTV 117
+ P V
Sbjct: 78 LPNSPTGKV 86
>gi|257458169|ref|ZP_05623323.1| DNA ligase, NAD-dependent [Treponema vincentii ATCC 35580]
gi|257444463|gb|EEV19552.1| DNA ligase, NAD-dependent [Treponema vincentii ATCC 35580]
Length = 641
Score = 43.7 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQ 103
++ L + HQ YY + P +D +D + + L +L Q
Sbjct: 6 RIQELEALIKKHQNLYYNAE-PEISDADFDMLWDELRSLDPQ 46
>gi|288870885|ref|ZP_06115627.2| DNA ligase, NAD-dependent [Clostridium hathewayi DSM 13479]
gi|288865557|gb|EFC97855.1| DNA ligase, NAD-dependent [Clostridium hathewayi DSM 13479]
Length = 645
Score = 43.7 bits (102), Expect = 0.009, Method: Composition-based stats.
Identities = 11/45 (24%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 75 KWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
K YY+ + ++ YD++ + L L+++ + P +VGY
Sbjct: 13 KTYYQESREIMSNYEYDKLYDELAELEKE-TGVVLSKSPTQSVGY 56
>gi|283787721|ref|YP_003367586.1| DNA ligase [Citrobacter rodentium ICC168]
gi|282951175|emb|CBG90867.1| putative DNA ligase [Citrobacter rodentium ICC168]
Length = 560
Score = 43.3 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERL 97
S A E+ L + Y++ DG+YD++ RL
Sbjct: 25 SSARAQEEISRLRQQIARWDDDYWKKGKSAIEDGVYDQLRTRL 67
>gi|104783946|ref|YP_610444.1| NAD-dependent DNA ligase LigB [Pseudomonas entomophila L48]
gi|123255217|sp|Q1I3X5|LIGB_PSEE4 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] B
gi|95112933|emb|CAK17661.1| putative DNA ligase, NAD-dependent [Pseudomonas entomophila L48]
Length = 557
Score = 43.3 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
Query: 44 WLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQ 103
L + A EV L+K H Y+R L D LYD+ + L LQ
Sbjct: 16 ALADHRPCPDWPAQRARAEVSQLLKTLSHWDDHYHRQGVALVADELYDQSRQHLRHLQGC 75
Query: 104 FPELFDEDHP 113
F +L D P
Sbjct: 76 F-DLASNDAP 84
>gi|326775447|ref|ZP_08234712.1| DNA ligase, NAD-dependent [Streptomyces cf. griseus XylebKG-1]
gi|326655780|gb|EGE40626.1| DNA ligase, NAD-dependent [Streptomyces cf. griseus XylebKG-1]
Length = 712
Score = 43.3 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 85 FTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
D YDR++ + A + PE D P V
Sbjct: 39 LDDDAYDRLARGIAAYEADHPEEVLADSPTGKV 71
>gi|182434930|ref|YP_001822649.1| putative NAD-dependent DNA ligase [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|254778149|sp|B1VUC2|DNLJ1_STRGG RecName: Full=DNA ligase 1; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] 1
gi|178463446|dbj|BAG17966.1| putative NAD-dependent DNA ligase [Streptomyces griseus subsp.
griseus NBRC 13350]
Length = 719
Score = 43.3 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 85 FTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
D YDR++ + A + PE D P V
Sbjct: 46 LDDDAYDRLARGIAAYEADHPEEVLADSPTGKV 78
>gi|325271326|ref|ZP_08137858.1| NAD-dependent DNA ligase LigB [Pseudomonas sp. TJI-51]
gi|324103542|gb|EGC00857.1| NAD-dependent DNA ligase LigB [Pseudomonas sp. TJI-51]
Length = 562
Score = 43.3 bits (101), Expect = 0.012, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 22/50 (44%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
+ + EV L K Y+R L D LYD+ +RL LQ+ F
Sbjct: 27 NPQQVASEVAQLRKTLGSWDDHYHRQGIALVPDELYDQSRQRLAQLQQCF 76
>gi|26991646|ref|NP_747071.1| NAD-dependent DNA ligase LigB [Pseudomonas putida KT2440]
gi|81439525|sp|Q88D59|LIGB_PSEPK RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] B
gi|24986741|gb|AAN70535.1|AE016695_9 DNA ligase, NAD-dependent, putative [Pseudomonas putida KT2440]
Length = 566
Score = 43.3 bits (101), Expect = 0.012, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 27/60 (45%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
L +A + +A EV L + Y+R L D LYD+ ERL+ LQ+ F
Sbjct: 17 LARAASCPHWNPQQAKAEVAQLRATLARWDEHYHRQGIALVADELYDQSHERLNHLQQCF 76
>gi|289767058|ref|ZP_06526436.1| DNA ligase, NAD-dependent [Streptomyces lividans TK24]
gi|289697257|gb|EFD64686.1| DNA ligase, NAD-dependent [Streptomyces lividans TK24]
Length = 703
Score = 43.3 bits (101), Expect = 0.012, Method: Composition-based stats.
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 85 FTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
D YDR++ + A + + P+ D P V
Sbjct: 43 LDDDAYDRLARGIAAWEAEHPDEVLPDSPTGKV 75
>gi|256783179|ref|ZP_05521610.1| DNA ligase [Streptomyces lividans TK24]
Length = 690
Score = 43.3 bits (101), Expect = 0.012, Method: Composition-based stats.
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 85 FTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
D YDR++ + A + + P+ D P V
Sbjct: 30 LDDDAYDRLARGIAAWEAEHPDEVLPDSPTGKV 62
>gi|166215594|sp|Q93IZ8|DNLJ2_STRCO RecName: Full=DNA ligase 2; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] 2
Length = 700
Score = 43.3 bits (101), Expect = 0.012, Method: Composition-based stats.
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 85 FTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
D YDR++ + A + + P+ D P V
Sbjct: 40 LDDDAYDRLARGIAAWEAEHPDEVLPDSPTGKV 72
>gi|21225788|ref|NP_631567.1| DNA ligase [Streptomyces coelicolor A3(2)]
gi|14495032|emb|CAC42149.1| putative DNA ligase [Streptomyces coelicolor A3(2)]
Length = 723
Score = 43.3 bits (101), Expect = 0.012, Method: Composition-based stats.
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 85 FTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
D YDR++ + A + + P+ D P V
Sbjct: 63 LDDDAYDRLARGIAAWEAEHPDEVLPDSPTGKV 95
>gi|290962622|ref|YP_003493804.1| DNA ligase [Streptomyces scabiei 87.22]
gi|260652148|emb|CBG75280.1| putative DNA ligase [Streptomyces scabiei 87.22]
Length = 704
Score = 42.9 bits (100), Expect = 0.013, Method: Composition-based stats.
Identities = 10/42 (23%), Positives = 14/42 (33%)
Query: 76 WYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
YY D YDR+ + + PE + P V
Sbjct: 37 AYYTGGTSALDDDTYDRLVRGIAVWEAAHPEQVLPESPTGKV 78
>gi|256829851|ref|YP_003158579.1| DNA ligase (NAD(+)) [Desulfomicrobium baculatum DSM 4028]
gi|256579027|gb|ACU90163.1| DNA ligase (NAD(+)) [Desulfomicrobium baculatum DSM 4028]
Length = 615
Score = 42.9 bits (100), Expect = 0.014, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
E LV+ + Y R PL D YD + RL L P L
Sbjct: 9 SEAHRLVERLAEYNDAY-RRGAPLVGDAQYDLLLARLRELDPDHPFLHR 56
>gi|282881715|ref|ZP_06290378.1| DNA ligase domain protein [Prevotella timonensis CRIS 5C-B1]
gi|281304474|gb|EFA96571.1| DNA ligase domain protein [Prevotella timonensis CRIS 5C-B1]
Length = 655
Score = 42.9 bits (100), Expect = 0.015, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 1/60 (1%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+ + LV YY L TD +D + + L L+ + D P N V
Sbjct: 2 DIQQRMRKLVDKLNLASDNYYGGKPELMTDYEWDALFDELKQLEMS-SGVVLPDSPTNRV 60
>gi|255019090|ref|ZP_05291216.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes FSL F2-515]
Length = 99
Score = 42.9 bits (100), Expect = 0.016, Method: Composition-based stats.
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 94 SERLDALQEQFPELFDEDHPWNTVG 118
+ L ++E PE + P VG
Sbjct: 1 MQELLKIEEAHPEWVTPESPSKRVG 25
>gi|251791698|ref|YP_003006419.1| NAD-dependent DNA ligase LigB [Dickeya zeae Ech1591]
gi|247540319|gb|ACT08940.1| DNA ligase (NAD(+)) [Dickeya zeae Ech1591]
Length = 560
Score = 42.9 bits (100), Expect = 0.016, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 22/64 (34%)
Query: 41 LESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDAL 100
L S A + S A EV L + YY D +YD++ + L
Sbjct: 13 LVSGFANATPCPAWSSARAEREVTQLGQQLTQWDNAYYEQGRSPVDDQVYDQLRQTLATW 72
Query: 101 QEQF 104
Q F
Sbjct: 73 QRCF 76
>gi|268610246|ref|ZP_06143973.1| DNA ligase, NAD-dependent [Ruminococcus flavefaciens FD-1]
Length = 685
Score = 42.9 bits (100), Expect = 0.016, Method: Composition-based stats.
Identities = 12/75 (16%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
+ KA ++ + + ++ L ++ YY + +D YD + + L+ L+++
Sbjct: 26 ITKATPPKEVNMDK-INRMKELNELLAKAADSYYNTGVEIMSDHEYDELYDELEKLEKE- 83
Query: 105 PELFDEDHPWNTVGY 119
+ VG+
Sbjct: 84 TGVILNGSRTQQVGF 98
>gi|330501400|ref|YP_004378269.1| NAD-dependent DNA ligase LigB [Pseudomonas mendocina NK-01]
gi|328915686|gb|AEB56517.1| NAD-dependent DNA ligase LigB [Pseudomonas mendocina NK-01]
Length = 564
Score = 42.5 bits (99), Expect = 0.017, Method: Composition-based stats.
Identities = 14/58 (24%), Positives = 25/58 (43%)
Query: 48 AKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFP 105
A+ + + A +E+ L + Y+ + L D +YD+ RL A + FP
Sbjct: 17 AEPCPNWADARAAMELGALSRQIAEWDDAYHNQGHSLVADEIYDQARGRLQAWHQCFP 74
>gi|302538378|ref|ZP_07290720.1| DNA ligase, NAD-dependent [Streptomyces sp. C]
gi|302447273|gb|EFL19089.1| DNA ligase, NAD-dependent [Streptomyces sp. C]
Length = 699
Score = 42.5 bits (99), Expect = 0.019, Method: Composition-based stats.
Identities = 11/68 (16%), Positives = 22/68 (32%), Gaps = 3/68 (4%)
Query: 53 SLSKGEAMIEVEYLVKIAL---HHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
+++ A+ + + YY D +D + + A + +PE D
Sbjct: 16 TITTASALADRDEYADAIATAVKASAAYYGSGGSPLDDASFDLLVSLIQAYEAAYPEHVD 75
Query: 110 EDHPWNTV 117
P V
Sbjct: 76 PASPTGKV 83
>gi|32491184|ref|NP_871438.1| hypothetical protein WGLp435 [Wigglesworthia glossinidia
endosymbiont of Glossina brevipalpis]
gi|81741654|sp|Q8D2B9|DNLJ_WIGBR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|25166391|dbj|BAC24581.1| lig [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis]
Length = 591
Score = 42.5 bits (99), Expect = 0.020, Method: Composition-based stats.
Identities = 10/47 (21%), Positives = 20/47 (42%)
Query: 58 EAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
+ ++ L K YY + L +D YD L+ L++++
Sbjct: 9 KIKTKILNLRKKIEMWNNNYYVKNLSLVSDEKYDSTLFELNELEKKY 55
>gi|146305490|ref|YP_001185955.1| NAD-dependent DNA ligase LigB [Pseudomonas mendocina ymp]
gi|172046035|sp|A4XPF7|LIGB_PSEMY RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] B
gi|145573691|gb|ABP83223.1| DNA ligase (NAD(+)) [Pseudomonas mendocina ymp]
Length = 562
Score = 42.5 bits (99), Expect = 0.021, Method: Composition-based stats.
Identities = 15/64 (23%), Positives = 23/64 (35%)
Query: 41 LESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDAL 100
L + +A+ A +E L + Y+ D LYD+ ERL
Sbjct: 12 LLPLIAQAEPCPDWPDSRAQVEFAALSQQIAQWDDAYHNQGRSPIADELYDQARERLQRW 71
Query: 101 QEQF 104
Q+ F
Sbjct: 72 QQCF 75
>gi|294783065|ref|ZP_06748389.1| DNA ligase, NAD-dependent [Fusobacterium sp. 1_1_41FAA]
gi|294479943|gb|EFG27720.1| DNA ligase, NAD-dependent [Fusobacterium sp. 1_1_41FAA]
Length = 696
Score = 42.1 bits (98), Expect = 0.022, Method: Composition-based stats.
Identities = 14/58 (24%), Positives = 30/58 (51%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L + ++ YY + L +D +D + + L++L+E++PE + P +VG
Sbjct: 29 ERIVKLKEDLDKYRDSYYNDNESLISDYEFDILLKELESLEEKYPEYKEASSPTESVG 86
>gi|312963566|ref|ZP_07778047.1| DNA ligase B [Pseudomonas fluorescens WH6]
gi|311282075|gb|EFQ60675.1| DNA ligase B [Pseudomonas fluorescens WH6]
Length = 553
Score = 42.1 bits (98), Expect = 0.027, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 39 RALESWLDKAKKVTSLSK---GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSE 95
R L ++L A + SL++ +A ++ L + Y+RL +D LYD+ +
Sbjct: 2 RLLIAFLLYAVPLWSLAQNCPEDARTQIHELAEQVRLWDDSYHRLGQSPVSDELYDQARQ 61
Query: 96 RL 97
RL
Sbjct: 62 RL 63
>gi|302562478|ref|ZP_07314820.1| DNA ligase, NAD-dependent [Streptomyces griseoflavus Tu4000]
gi|302480096|gb|EFL43189.1| DNA ligase, NAD-dependent [Streptomyces griseoflavus Tu4000]
Length = 533
Score = 41.8 bits (97), Expect = 0.029, Method: Composition-based stats.
Identities = 9/42 (21%), Positives = 14/42 (33%)
Query: 76 WYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
YY D YDR+ + + + P+ P V
Sbjct: 21 AYYGGGTSALDDDAYDRLVRGIADWEAEHPDAILPGSPTGKV 62
>gi|330813743|ref|YP_004357982.1| DNA ligase [Candidatus Pelagibacter sp. IMCC9063]
gi|327486838|gb|AEA81243.1| DNA ligase [Candidatus Pelagibacter sp. IMCC9063]
Length = 672
Score = 41.8 bits (97), Expect = 0.031, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 68 KIALHHQKWYYRLDNPLFTDGLYDRV 93
K+ + YY D+P TDG YD +
Sbjct: 13 KLLNQYDHNYYETDSPKITDGEYDEI 38
>gi|70733074|ref|YP_262847.1| NAD-dependent DNA ligase LigB [Pseudomonas fluorescens Pf-5]
gi|123761963|sp|Q4K4I6|LIGB_PSEF5 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] B
gi|68347373|gb|AAY94979.1| DNA ligase, NAD-dependent, putative [Pseudomonas fluorescens Pf-5]
Length = 556
Score = 41.8 bits (97), Expect = 0.031, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE-DHP 113
A E+ L + YYR L D LYD+ +RL ++ FP+ D P
Sbjct: 28 ATDEITALQQQLQRWDSSYYRDGRSLVADELYDQARQRLLTWRQCFPQAPRAMDQP 83
>gi|265763497|ref|ZP_06092065.1| NAD-dependent DNA ligase [Bacteroides sp. 2_1_16]
gi|263256105|gb|EEZ27451.1| NAD-dependent DNA ligase [Bacteroides sp. 2_1_16]
Length = 652
Score = 41.8 bits (97), Expect = 0.032, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDAL 100
L+ + H K Y R+ P +D YD E L L
Sbjct: 13 LLDMIKRHNKMY-RMGAPEISDAEYDAEIELLKTL 46
>gi|323975134|gb|EGB70239.1| NAD-dependent DNA ligase adenylation domain-containing protein
[Escherichia coli TW10509]
Length = 560
Score = 41.8 bits (97), Expect = 0.032, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 26 SPARAQEEISRLQQQIKQWDDDYWKEGESEIEDGVYDQLSARLTQWQRCF 75
>gi|323965913|gb|EGB61361.1| NAD-dependent DNA ligase adenylation domain-containing protein
[Escherichia coli M863]
Length = 562
Score = 41.8 bits (97), Expect = 0.032, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 28 SPARAQEEISRLQQQIKQWDDDYWKEGESEIEDGVYDQLSARLTQWQRCF 77
>gi|191170589|ref|ZP_03032142.1| NAD-dependent DNA ligase adenylation domain [Escherichia coli F11]
gi|190909397|gb|EDV68983.1| NAD-dependent DNA ligase adenylation domain [Escherichia coli F11]
Length = 562
Score = 41.8 bits (97), Expect = 0.032, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 28 SPARAQEEISRLQQQIKQWDDDYWKEGESEIEDGVYDQLSARLTQWQRCF 77
>gi|110643888|ref|YP_671618.1| NAD-dependent DNA ligase LigB [Escherichia coli 536]
gi|300983472|ref|ZP_07176619.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
MS 200-1]
gi|110345480|gb|ABG71717.1| hypothetical DNA ligase-like protein YicF [Escherichia coli 536]
gi|300306936|gb|EFJ61456.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
MS 200-1]
gi|324012718|gb|EGB81937.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
MS 60-1]
Length = 561
Score = 41.8 bits (97), Expect = 0.032, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 27 SPARAQEEISRLQQQIKQWDDDYWKEGESEIEDGVYDQLSARLTQWQRCF 76
>gi|166226371|sp|Q0TBG2|LIGB_ECOL5 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] B
Length = 560
Score = 41.8 bits (97), Expect = 0.032, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 26 SPARAQEEISRLQQQIKQWDDDYWKEGESEIEDGVYDQLSARLTQWQRCF 75
>gi|320007473|gb|ADW02323.1| DNA ligase, NAD-dependent [Streptomyces flavogriseus ATCC 33331]
Length = 698
Score = 41.8 bits (97), Expect = 0.035, Method: Composition-based stats.
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 84 LFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
D YDR+ + A +E+ P+ + P V
Sbjct: 36 TLDDDAYDRLVRAIAAYEEEHPQEVLDASPTGKV 69
>gi|300728177|ref|ZP_07061548.1| putative DNA ligase [Prevotella bryantii B14]
gi|299774603|gb|EFI71224.1| putative DNA ligase [Prevotella bryantii B14]
Length = 705
Score = 41.4 bits (96), Expect = 0.038, Method: Composition-based stats.
Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
+ ++E+ V + YY + TD +D + +RL L+++ + E+ P +
Sbjct: 3 EDKILEMRKAVDLLNRAADAYYNGQAEIMTDYEWDALFDRLKVLEQE-TGVILEESPIHH 61
Query: 117 V 117
V
Sbjct: 62 V 62
>gi|262066346|ref|ZP_06025958.1| DNA ligase, NAD-dependent [Fusobacterium periodonticum ATCC 33693]
gi|291379910|gb|EFE87428.1| DNA ligase, NAD-dependent [Fusobacterium periodonticum ATCC 33693]
Length = 696
Score = 41.4 bits (96), Expect = 0.040, Method: Composition-based stats.
Identities = 14/58 (24%), Positives = 30/58 (51%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ L + ++ YY + L +D +D + + L++L+E++PE + P +VG
Sbjct: 29 ERIVKLKEDLDKYRDSYYNDNESLISDYEFDILLKELESLEEKYPEYKEASSPTASVG 86
>gi|237743296|ref|ZP_04573777.1| NAD-dependent DNA ligase [Fusobacterium sp. 7_1]
gi|229433075|gb|EEO43287.1| NAD-dependent DNA ligase [Fusobacterium sp. 7_1]
Length = 696
Score = 41.4 bits (96), Expect = 0.043, Method: Composition-based stats.
Identities = 18/86 (20%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 35 LPNKRALESWLDKAKKVTSLSKGEA--MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDR 92
+ K+ +E + +T S E + ++ L + ++ YY + L +D +D
Sbjct: 1 MEIKKRIEELKNNQTGLTLYSSQELNDLEKIVKLREDLNKYRDSYYNDNKSLISDYEFDI 60
Query: 93 VSERLDALQEQFPELFDEDHPWNTVG 118
+ + L++L+E++P+ + P +VG
Sbjct: 61 LLKELESLEEKYPQYKEISSPTTSVG 86
>gi|256028750|ref|ZP_05442584.1| preprotein translocase subunit SecA [Fusobacterium sp. D11]
gi|289766653|ref|ZP_06526031.1| NAD-dependent DNA ligase [Fusobacterium sp. D11]
gi|289718208|gb|EFD82220.1| NAD-dependent DNA ligase [Fusobacterium sp. D11]
Length = 696
Score = 41.4 bits (96), Expect = 0.043, Method: Composition-based stats.
Identities = 18/86 (20%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 35 LPNKRALESWLDKAKKVTSLSKGEA--MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDR 92
+ K+ +E + +T S E + ++ L + ++ YY + L +D +D
Sbjct: 1 MEIKKRIEELKNNQTGLTLYSSQELNDLEKIVKLREDLNKYRDSYYNDNKSLISDYEFDI 60
Query: 93 VSERLDALQEQFPELFDEDHPWNTVG 118
+ + L++L+E++P+ + P +VG
Sbjct: 61 LLKELESLEEKYPQYKEISSPTTSVG 86
>gi|260599943|ref|YP_003212514.1| NAD-dependent DNA ligase LigB [Cronobacter turicensis z3032]
gi|260219120|emb|CBA34475.1| DNA ligase B [Cronobacter turicensis z3032]
Length = 550
Score = 41.4 bits (96), Expect = 0.046, Method: Composition-based stats.
Identities = 10/44 (22%), Positives = 19/44 (43%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLD 98
+ +A EV L + Y+ +D +YD + +RL+
Sbjct: 14 TSEQARQEVAALESQLARWDEAYWLRGENNVSDAVYDGMRQRLN 57
>gi|303237245|ref|ZP_07323815.1| NAD-dependent DNA ligase domain protein [Prevotella disiens
FB035-09AN]
gi|302482632|gb|EFL45657.1| NAD-dependent DNA ligase domain protein [Prevotella disiens
FB035-09AN]
Length = 655
Score = 41.0 bits (95), Expect = 0.050, Method: Composition-based stats.
Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+ LV YY N + +D +D + L L+E+ D P V
Sbjct: 9 MRELVDKLNEASNTYYNGQNEIMSDHEWDAAFDELKHLEEE-TGTILPDSPTANV 62
>gi|296329302|ref|ZP_06871803.1| NAD-dependent DNA ligase LigA [Fusobacterium nucleatum subsp.
nucleatum ATCC 23726]
gi|296153658|gb|EFG94475.1| NAD-dependent DNA ligase LigA [Fusobacterium nucleatum subsp.
nucleatum ATCC 23726]
Length = 696
Score = 41.0 bits (95), Expect = 0.050, Method: Composition-based stats.
Identities = 18/86 (20%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 35 LPNKRALESWLDKAKKVTSLSKGEA--MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDR 92
+ K+ +E + +T S E + ++ L + ++ YY + L +D +D
Sbjct: 1 MEIKKRIEELKNNQTGLTFYSSQELNDLEKIVKLREDLNKYRDSYYNDNKSLISDYEFDI 60
Query: 93 VSERLDALQEQFPELFDEDHPWNTVG 118
+ + L++L+E++P+ + P +VG
Sbjct: 61 LLKELESLEEKYPQYKEISSPTTSVG 86
>gi|194430072|ref|ZP_03062577.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli B171]
gi|194411899|gb|EDX28216.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli B171]
Length = 577
Score = 41.0 bits (95), Expect = 0.050, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 30/83 (36%), Gaps = 4/83 (4%)
Query: 26 KLLTLEAKFLPNKRALESWLDKAKKV----TSLSKGEAMIEVEYLVKIALHHQKWYYRLD 81
L T E K L S L V + S A E+ L + Y++
Sbjct: 10 SLTTAEVKMKVWMAILISILCWQSSVWAVCPAWSPARAQEEISRLQQQIKQWDDDYWKEG 69
Query: 82 NPLFTDGLYDRVSERLDALQEQF 104
DG+YD++S RL Q F
Sbjct: 70 KSEVEDGVYDQLSARLTQWQRCF 92
>gi|193063789|ref|ZP_03044876.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli E22]
gi|192930504|gb|EDV83111.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli E22]
Length = 577
Score = 41.0 bits (95), Expect = 0.050, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 30/83 (36%), Gaps = 4/83 (4%)
Query: 26 KLLTLEAKFLPNKRALESWLDKAKKV----TSLSKGEAMIEVEYLVKIALHHQKWYYRLD 81
L T E K L S L V + S A E+ L + Y++
Sbjct: 10 SLTTAEVKMKVWMAILISILCWQSSVWAVCPAWSPARAQEEISRLQQQIKQWDDDYWKEG 69
Query: 82 NPLFTDGLYDRVSERLDALQEQF 104
DG+YD++S RL Q F
Sbjct: 70 KSEVEDGVYDQLSARLTQWQRCF 92
>gi|330967268|gb|EGH67528.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 560
Score = 41.0 bits (95), Expect = 0.050, Method: Composition-based stats.
Identities = 13/59 (22%), Positives = 23/59 (38%)
Query: 40 ALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLD 98
L + A + S +A E+ L + Y+R D LYD+ ++L+
Sbjct: 14 TLFTAFSHASQCPDWSHAKASSEITALQQQIAKWDDSYHRQGLSQIPDELYDQSRQKLN 72
>gi|270265241|ref|ZP_06193503.1| DNA ligase B [Serratia odorifera 4Rx13]
gi|270040875|gb|EFA13977.1| DNA ligase B [Serratia odorifera 4Rx13]
Length = 567
Score = 41.0 bits (95), Expect = 0.051, Method: Composition-based stats.
Identities = 9/39 (23%), Positives = 17/39 (43%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLD 98
+E+ L YY+ + L D +YD + ++L
Sbjct: 36 QLEITALKNQLERWDVAYYQQGDSLIEDQVYDSLRQKLQ 74
>gi|19705038|ref|NP_602533.1| NAD-dependent DNA ligase [Fusobacterium nucleatum subsp. nucleatum
ATCC 25586]
gi|81485410|sp|Q8RI94|DNLJ_FUSNN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|19712952|gb|AAL93832.1| NAD-dependent DNA ligase [Fusobacterium nucleatum subsp. nucleatum
ATCC 25586]
Length = 696
Score = 41.0 bits (95), Expect = 0.052, Method: Composition-based stats.
Identities = 18/86 (20%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 35 LPNKRALESWLDKAKKVTSLSKGEA--MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDR 92
+ K+ +E + +T S E + ++ L + ++ YY + L +D +D
Sbjct: 1 MEIKKRIEELKNNQTGLTFYSSQELNDLEKIVKLREDLNKYRDSYYNDNKSLISDYEFDI 60
Query: 93 VSERLDALQEQFPELFDEDHPWNTVG 118
+ + L++L+E++P+ + P +VG
Sbjct: 61 LLKELESLEEKYPQYKEISSPTTSVG 86
>gi|312967984|ref|ZP_07782195.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia
coli 2362-75]
gi|312287243|gb|EFR15152.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia
coli 2362-75]
Length = 561
Score = 41.0 bits (95), Expect = 0.060, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 22/52 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
S A E+ L + Y++ DG+YD++S RL Q F E
Sbjct: 26 SPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGE 77
>gi|293413081|ref|ZP_06655749.1| DNA ligase [Escherichia coli B354]
gi|291468728|gb|EFF11221.1| DNA ligase [Escherichia coli B354]
Length = 561
Score = 41.0 bits (95), Expect = 0.060, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 22/52 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
S A E+ L + Y++ DG+YD++S RL Q F E
Sbjct: 26 SPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGE 77
>gi|215488942|ref|YP_002331373.1| NAD-dependent DNA ligase LigB [Escherichia coli O127:H6 str.
E2348/69]
gi|254809143|sp|B7UM69|LIGB_ECO27 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] B
gi|215267014|emb|CAS11459.1| conserved inner membrane protein [Escherichia coli O127:H6 str.
E2348/69]
Length = 561
Score = 41.0 bits (95), Expect = 0.060, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 22/52 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
S A E+ L + Y++ DG+YD++S RL Q F E
Sbjct: 26 SPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGE 77
>gi|237738042|ref|ZP_04568523.1| NAD-dependent DNA ligase [Fusobacterium mortiferum ATCC 9817]
gi|229419922|gb|EEO34969.1| NAD-dependent DNA ligase [Fusobacterium mortiferum ATCC 9817]
Length = 663
Score = 41.0 bits (95), Expect = 0.061, Method: Composition-based stats.
Identities = 13/53 (24%), Positives = 28/53 (52%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
+ + + +YY + L +D +D++ L L+E++PE +++ P VG
Sbjct: 1 MREKIKKYSDYYYTNNESLISDVEFDKLLVELKELEEKYPEYKEKNSPTEIVG 53
>gi|172044492|sp|A8A6A9|LIGB_ECOHS RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] B
Length = 560
Score = 40.6 bits (94), Expect = 0.064, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 26 SPARAQEEISRLQQQIKQWDDVYWKEGKSEVEDGVYDQLSARLTQWQRCF 75
>gi|157163128|ref|YP_001460446.1| NAD-dependent DNA ligase LigB [Escherichia coli HS]
gi|157068808|gb|ABV08063.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli HS]
Length = 562
Score = 40.6 bits (94), Expect = 0.064, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 28 SPARAQEEISRLQQQIKQWDDVYWKEGKSEVEDGVYDQLSARLTQWQRCF 77
>gi|307128799|ref|YP_003880815.1| DNA ligase [Dickeya dadantii 3937]
gi|306526328|gb|ADM96258.1| DNA ligase [Dickeya dadantii 3937]
Length = 561
Score = 40.6 bits (94), Expect = 0.065, Method: Composition-based stats.
Identities = 13/55 (23%), Positives = 21/55 (38%)
Query: 43 SWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERL 97
S L +A + S A E+ L + YY D +YD++ + L
Sbjct: 16 SGLAEAASCPAWSSTRAEQEITQLGQQLTQWDNAYYEQGQSPVDDQVYDQLRQTL 70
>gi|289672514|ref|ZP_06493404.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. syringae
FF5]
Length = 561
Score = 40.6 bits (94), Expect = 0.065, Method: Composition-based stats.
Identities = 14/57 (24%), Positives = 22/57 (38%)
Query: 41 LESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERL 97
L L A + S +A E+ L + Y+R D LYD+ ++L
Sbjct: 15 LLPGLGHASQCPDWSAAKARSEITALQQQIAAWDDSYHRQGISQIPDELYDQARQKL 71
>gi|169834756|ref|YP_001715955.1| hypothetical protein CLK_A0328 [Clostridium botulinum A3 str. Loch
Maree]
gi|169408863|gb|ACA57273.1| hypothetical protein CLK_A0328 [Clostridium botulinum A3 str. Loch
Maree]
Length = 125
Score = 40.6 bits (94), Expect = 0.067, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 8/76 (10%)
Query: 41 LESWLDKAKKVT--------SLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDR 92
L LD +K +T + + E + + + L H YYRL++ L D Y+
Sbjct: 7 LFDLLDTSKNITEEKQVNKNNTHENEIIELINKRRRQILVHSCIYYRLNDNLIDDYTYNE 66
Query: 93 VSERLDALQEQFPELF 108
+ L+ LQ +P+L
Sbjct: 67 WARELENLQNMYPDLL 82
>gi|218667573|ref|YP_002425666.1| DNA ligase, NAD-dependent, putative [Acidithiobacillus ferrooxidans
ATCC 23270]
gi|218519786|gb|ACK80372.1| DNA ligase, NAD-dependent, putative [Acidithiobacillus ferrooxidans
ATCC 23270]
Length = 609
Score = 40.6 bits (94), Expect = 0.074, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFD 109
LV Y R P+ +D YD + ERL Q P L
Sbjct: 3 LVHKLEEANAAY-RAGAPIMSDAEYDALVERLRREQPDHPYLQT 45
>gi|91094259|ref|XP_969448.1| PREDICTED: similar to protein-O-xylosyltransferase [Tribolium
castaneum]
gi|270016288|gb|EFA12734.1| hypothetical protein TcasGA2_TC002371 [Tribolium castaneum]
Length = 873
Score = 40.6 bits (94), Expect = 0.075, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF 108
G A+ +V+ L+KI H + +YY D D + L L+ +FP +
Sbjct: 260 GRALRQVKRLLKILYHTRHFYYIH-----VDVREDYLFRELLPLERRFPNIR 306
>gi|50119005|ref|YP_048172.1| NAD-dependent DNA ligase LigB [Pectobacterium atrosepticum
SCRI1043]
gi|81827264|sp|Q6DB58|LIGB_ERWCT RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] B
gi|49609531|emb|CAG72964.1| putative DNA ligase [Pectobacterium atrosepticum SCRI1043]
Length = 563
Score = 40.6 bits (94), Expect = 0.075, Method: Composition-based stats.
Identities = 11/46 (23%), Positives = 20/46 (43%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
A E++ L + YY D +YD++ E+L+ + F
Sbjct: 35 ASKEIDALRQQLEQWDDVYYTEGKSPIEDDVYDQLREQLNQWSQCF 80
>gi|170767052|ref|ZP_02901505.1| NAD(+)-dependent DNA ligase LigB [Escherichia albertii TW07627]
gi|170124490|gb|EDS93421.1| NAD(+)-dependent DNA ligase LigB [Escherichia albertii TW07627]
Length = 561
Score = 40.6 bits (94), Expect = 0.076, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 22/52 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
S +A E+ L + Y++ D +YD++S RL Q F E
Sbjct: 26 SPAKAHDEISRLQQQIKQWDDDYWKEGQSTIEDSIYDQLSARLAQWQRCFGE 77
>gi|167583617|ref|YP_001671807.1| NAD-dependent DNA ligase [Enterobacteria phage phiEco32]
gi|164375455|gb|ABY52863.1| NAD-dependent DNA ligase [Enterobacteria phage phiEco32]
Length = 109
Score = 40.6 bits (94), Expect = 0.078, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 52 TSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
+ +S E + + + H YY LD+P+++D + +V+ L LQ +PE
Sbjct: 13 SEISPAEVINRH---RRQLIIHSYLYYWLDDPIWSDDKWQQVANDLVELQALYPE 64
>gi|323189446|gb|EFZ74727.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia
coli RN587/1]
Length = 561
Score = 40.2 bits (93), Expect = 0.082, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 22/52 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
S A E+ L + Y++ DG+YD++S RL Q F E
Sbjct: 26 SSARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGE 77
>gi|332750605|gb|EGJ81013.1| NAD-dependent DNA ligase adenylation domain protein [Shigella
flexneri 4343-70]
Length = 556
Score = 40.2 bits (93), Expect = 0.085, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 22 SPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF 71
>gi|332084490|gb|EGI89685.1| NAD-dependent DNA ligase adenylation domain protein [Shigella
dysenteriae 155-74]
gi|332084829|gb|EGI90012.1| NAD-dependent DNA ligase adenylation domain protein [Shigella
boydii 5216-82]
Length = 195
Score = 40.2 bits (93), Expect = 0.085, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 26 SPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF 75
>gi|331675125|ref|ZP_08375882.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
[Escherichia coli TA280]
gi|331068034|gb|EGI39432.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
[Escherichia coli TA280]
Length = 562
Score = 40.2 bits (93), Expect = 0.085, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 28 SPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF 77
>gi|331649461|ref|ZP_08350547.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
[Escherichia coli M605]
gi|331041959|gb|EGI14103.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
[Escherichia coli M605]
Length = 562
Score = 40.2 bits (93), Expect = 0.085, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 28 SPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF 77
>gi|331644366|ref|ZP_08345495.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
[Escherichia coli H736]
gi|331655280|ref|ZP_08356279.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
[Escherichia coli M718]
gi|331036660|gb|EGI08886.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
[Escherichia coli H736]
gi|331047295|gb|EGI19373.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
[Escherichia coli M718]
Length = 562
Score = 40.2 bits (93), Expect = 0.085, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 28 SPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF 77
>gi|324019686|gb|EGB88905.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
MS 117-3]
Length = 450
Score = 40.2 bits (93), Expect = 0.085, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 26 SPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF 75
>gi|323939593|gb|EGB35799.1| NAD-dependent DNA ligase adenylation domain-containing protein
[Escherichia coli E482]
Length = 562
Score = 40.2 bits (93), Expect = 0.085, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 28 SPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF 77
>gi|323934808|gb|EGB31190.1| NAD-dependent DNA ligase adenylation domain-containing protein
[Escherichia coli E1520]
Length = 560
Score = 40.2 bits (93), Expect = 0.085, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 26 SPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF 75
>gi|315296990|gb|EFU56270.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
MS 16-3]
Length = 561
Score = 40.2 bits (93), Expect = 0.085, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 27 SPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF 76
>gi|315285425|gb|EFU44870.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
MS 110-3]
gi|324008103|gb|EGB77322.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
MS 57-2]
Length = 561
Score = 40.2 bits (93), Expect = 0.085, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 27 SPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF 76
>gi|331659983|ref|ZP_08360921.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
[Escherichia coli TA206]
gi|331053198|gb|EGI25231.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
[Escherichia coli TA206]
Length = 560
Score = 40.2 bits (93), Expect = 0.085, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 26 SPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF 75
>gi|330909708|gb|EGH38222.1| DNA ligase , LigB [Escherichia coli AA86]
Length = 560
Score = 40.2 bits (93), Expect = 0.085, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 26 SPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF 75
>gi|306816005|ref|ZP_07450143.1| NAD-dependent DNA ligase LigB [Escherichia coli NC101]
gi|305850401|gb|EFM50858.1| NAD-dependent DNA ligase LigB [Escherichia coli NC101]
Length = 560
Score = 40.2 bits (93), Expect = 0.085, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 26 SPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF 75
>gi|300815113|ref|ZP_07095338.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
MS 107-1]
gi|300532005|gb|EFK53067.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
MS 107-1]
Length = 560
Score = 40.2 bits (93), Expect = 0.085, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 26 SPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF 75
>gi|300822417|ref|ZP_07102557.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
MS 119-7]
gi|309797611|ref|ZP_07691999.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
MS 145-7]
gi|300525064|gb|EFK46133.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
MS 119-7]
gi|308118798|gb|EFO56060.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
MS 145-7]
Length = 561
Score = 40.2 bits (93), Expect = 0.085, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 27 SPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF 76
>gi|300927922|ref|ZP_07143481.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
MS 187-1]
gi|300464014|gb|EFK27507.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
MS 187-1]
Length = 561
Score = 40.2 bits (93), Expect = 0.085, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 27 SPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF 76
>gi|300898582|ref|ZP_07116912.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
MS 198-1]
gi|300357745|gb|EFJ73615.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
MS 198-1]
Length = 561
Score = 40.2 bits (93), Expect = 0.085, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 27 SPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF 76
>gi|300950021|ref|ZP_07163971.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
MS 116-1]
gi|300955364|ref|ZP_07167743.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
MS 175-1]
gi|301644314|ref|ZP_07244316.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
MS 146-1]
gi|300317736|gb|EFJ67520.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
MS 175-1]
gi|300450635|gb|EFK14255.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
MS 116-1]
gi|301077352|gb|EFK92158.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
MS 146-1]
Length = 561
Score = 40.2 bits (93), Expect = 0.085, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 27 SPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF 76
>gi|301028426|ref|ZP_07191672.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
MS 196-1]
gi|299878537|gb|EFI86748.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
MS 196-1]
Length = 560
Score = 40.2 bits (93), Expect = 0.085, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 26 SPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF 75
>gi|297516518|ref|ZP_06934904.1| NAD-dependent DNA ligase LigB [Escherichia coli OP50]
Length = 83
Score = 40.2 bits (93), Expect = 0.085, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 26 SPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF 75
>gi|293417108|ref|ZP_06659735.1| DNA ligase [Escherichia coli B185]
gi|291431139|gb|EFF04132.1| DNA ligase [Escherichia coli B185]
Length = 562
Score = 40.2 bits (93), Expect = 0.085, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 28 SPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF 77
>gi|293463971|ref|ZP_06664385.1| DNA ligase B [Escherichia coli B088]
gi|291321603|gb|EFE61039.1| DNA ligase B [Escherichia coli B088]
Length = 562
Score = 40.2 bits (93), Expect = 0.085, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 28 SPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF 77
>gi|284923709|emb|CBG36806.1| putative DNA ligase [Escherichia coli 042]
Length = 560
Score = 40.2 bits (93), Expect = 0.085, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 26 SPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF 75
>gi|281603010|gb|ADA75994.1| DNA ligase B [Shigella flexneri 2002017]
Length = 562
Score = 40.2 bits (93), Expect = 0.085, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 28 SPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF 77
>gi|260846568|ref|YP_003224346.1| DNA ligase LigB, NAD(+)-dependent [Escherichia coli O103:H2 str.
12009]
gi|257761715|dbj|BAI33212.1| DNA ligase LigB, NAD(+)-dependent [Escherichia coli O103:H2 str.
12009]
Length = 560
Score = 40.2 bits (93), Expect = 0.085, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 26 SPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF 75
>gi|260857958|ref|YP_003231849.1| DNA ligase LigB, NAD(+)-dependent [Escherichia coli O26:H11 str.
11368]
gi|260870377|ref|YP_003236779.1| DNA ligase LigB, NAD(+)-dependent [Escherichia coli O111:H- str.
11128]
gi|257756607|dbj|BAI28109.1| DNA ligase LigB, NAD(+)-dependent [Escherichia coli O26:H11 str.
11368]
gi|257766733|dbj|BAI38228.1| DNA ligase LigB, NAD(+)-dependent [Escherichia coli O111:H- str.
11128]
Length = 560
Score = 40.2 bits (93), Expect = 0.085, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 26 SPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF 75
>gi|256025622|ref|ZP_05439487.1| NAD-dependent DNA ligase LigB [Escherichia sp. 4_1_40B]
gi|307140346|ref|ZP_07499702.1| NAD-dependent DNA ligase LigB [Escherichia coli H736]
gi|315618649|gb|EFU99235.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia
coli 3431]
Length = 560
Score = 40.2 bits (93), Expect = 0.085, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 26 SPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF 75
>gi|227883837|ref|ZP_04001642.1| NAD-dependent DNA ligase LigB [Escherichia coli 83972]
gi|300984900|ref|ZP_07177188.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
MS 45-1]
gi|301047437|ref|ZP_07194516.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
MS 185-1]
gi|227839115|gb|EEJ49581.1| NAD-dependent DNA ligase LigB [Escherichia coli 83972]
gi|300300645|gb|EFJ57030.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
MS 185-1]
gi|300408329|gb|EFJ91867.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
MS 45-1]
gi|307555765|gb|ADN48540.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli ABU 83972]
gi|315292916|gb|EFU52268.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
MS 153-1]
Length = 561
Score = 40.2 bits (93), Expect = 0.085, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 27 SPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF 76
>gi|312948208|gb|ADR29035.1| NAD-dependent DNA ligase LigB [Escherichia coli O83:H1 str. NRG
857C]
Length = 560
Score = 40.2 bits (93), Expect = 0.085, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 26 SPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF 75
>gi|218707281|ref|YP_002414800.1| NAD-dependent DNA ligase LigB [Escherichia coli UMN026]
gi|293407270|ref|ZP_06651194.1| DNA ligase B [Escherichia coli FVEC1412]
gi|298383016|ref|ZP_06992611.1| DNA ligase [Escherichia coli FVEC1302]
gi|226737618|sp|B7NEV1|LIGB_ECOLU RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] B
gi|218434378|emb|CAR15303.1| DNA ligase, NAD(+)-dependent [Escherichia coli UMN026]
gi|291426081|gb|EFE99115.1| DNA ligase B [Escherichia coli FVEC1412]
gi|298276852|gb|EFI18370.1| DNA ligase [Escherichia coli FVEC1302]
Length = 560
Score = 40.2 bits (93), Expect = 0.085, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 26 SPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF 75
>gi|218691930|ref|YP_002400142.1| NAD-dependent DNA ligase LigB [Escherichia coli ED1a]
gi|254809145|sp|B7N287|LIGB_ECO81 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] B
gi|218429494|emb|CAR10458.2| DNA ligase, NAD(+)-dependent [Escherichia coli ED1a]
Length = 560
Score = 40.2 bits (93), Expect = 0.085, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 26 SPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF 75
>gi|218702416|ref|YP_002410045.1| NAD-dependent DNA ligase LigB [Escherichia coli IAI39]
gi|226737615|sp|B7NQ11|LIGB_ECO7I RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] B
gi|218372402|emb|CAR20276.1| DNA ligase, NAD(+)-dependent [Escherichia coli IAI39]
Length = 560
Score = 40.2 bits (93), Expect = 0.085, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 26 SPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF 75
>gi|218556210|ref|YP_002389123.1| NAD-dependent DNA ligase LigB [Escherichia coli IAI1]
gi|226737616|sp|B7M4D2|LIGB_ECO8A RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] B
gi|218362978|emb|CAR00615.1| DNA ligase, NAD(+)-dependent [Escherichia coli IAI1]
Length = 560
Score = 40.2 bits (93), Expect = 0.085, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 26 SPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF 75
>gi|218697368|ref|YP_002405035.1| NAD-dependent DNA ligase LigB [Escherichia coli 55989]
gi|300923458|ref|ZP_07139498.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
MS 182-1]
gi|301325330|ref|ZP_07218837.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
MS 78-1]
gi|307314268|ref|ZP_07593876.1| DNA ligase (NAD(+)) [Escherichia coli W]
gi|254809144|sp|B7L771|LIGB_ECO55 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] B
gi|218354100|emb|CAV00658.1| DNA ligase, NAD(+)-dependent [Escherichia coli 55989]
gi|300420285|gb|EFK03596.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
MS 182-1]
gi|300847857|gb|EFK75617.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
MS 78-1]
gi|306906091|gb|EFN36610.1| DNA ligase (NAD(+)) [Escherichia coli W]
gi|315062935|gb|ADT77262.1| DNA ligase, NAD(+)-dependent [Escherichia coli W]
gi|323376472|gb|ADX48740.1| DNA ligase (NAD(+)) [Escherichia coli KO11]
gi|324116014|gb|EGC09940.1| NAD-dependent DNA ligase adenylation domain-containing protein
[Escherichia coli E1167]
Length = 560
Score = 40.2 bits (93), Expect = 0.085, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 26 SPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF 75
>gi|194435653|ref|ZP_03067756.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli 101-1]
gi|194425196|gb|EDX41180.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli 101-1]
Length = 562
Score = 40.2 bits (93), Expect = 0.085, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 28 SPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF 77
>gi|191167813|ref|ZP_03029619.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli B7A]
gi|190902156|gb|EDV61899.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli B7A]
Length = 562
Score = 40.2 bits (93), Expect = 0.085, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 28 SPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF 77
>gi|188492181|ref|ZP_02999451.1| putative DNA ligase domain protein [Escherichia coli 53638]
gi|188487380|gb|EDU62483.1| putative DNA ligase domain protein [Escherichia coli 53638]
Length = 562
Score = 40.2 bits (93), Expect = 0.085, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 28 SPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF 77
>gi|171855259|sp|A7ZTJ9|LIGB_ECO24 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] B
Length = 560
Score = 40.2 bits (93), Expect = 0.085, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 26 SPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF 75
>gi|170018123|ref|YP_001723077.1| NAD-dependent DNA ligase LigB [Escherichia coli ATCC 8739]
gi|253771511|ref|YP_003034342.1| NAD-dependent DNA ligase LigB [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254163575|ref|YP_003046683.1| NAD-dependent DNA ligase LigB [Escherichia coli B str. REL606]
gi|312972067|ref|ZP_07786241.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia
coli 1827-70]
gi|189046590|sp|B1IYV3|LIGB_ECOLC RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] B
gi|169753051|gb|ACA75750.1| DNA ligase (NAD(+)) [Escherichia coli ATCC 8739]
gi|242379171|emb|CAQ33973.1| DNA ligase [Escherichia coli BL21(DE3)]
gi|253322555|gb|ACT27157.1| DNA ligase (NAD(+)) [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|253975476|gb|ACT41147.1| NAD-dependent DNA ligase LigB [Escherichia coli B str. REL606]
gi|253979632|gb|ACT45302.1| NAD-dependent DNA ligase LigB [Escherichia coli BL21(DE3)]
gi|310334444|gb|EFQ00649.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia
coli 1827-70]
gi|323959895|gb|EGB55543.1| NAD-dependent DNA ligase adenylation domain-containing protein
[Escherichia coli H489]
gi|323971289|gb|EGB66534.1| NAD-dependent DNA ligase adenylation domain-containing protein
[Escherichia coli TA007]
Length = 560
Score = 40.2 bits (93), Expect = 0.085, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 26 SPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF 75
>gi|170681126|ref|YP_001745947.1| NAD-dependent DNA ligase LigB [Escherichia coli SMS-3-5]
gi|226737619|sp|B1LK84|LIGB_ECOSM RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] B
gi|170518844|gb|ACB17022.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli SMS-3-5]
Length = 560
Score = 40.2 bits (93), Expect = 0.085, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 26 SPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF 75
>gi|166226372|sp|Q8FC83|LIGB_ECOL6 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] B
Length = 560
Score = 40.2 bits (93), Expect = 0.085, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 26 SPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF 75
>gi|218560719|ref|YP_002393632.1| NAD-dependent DNA ligase LigB [Escherichia coli S88]
gi|166226370|sp|A1AHH8|LIGB_ECOK1 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] B
gi|166226373|sp|Q1R4U5|LIGB_ECOUT RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] B
gi|226737614|sp|B7MFK8|LIGB_ECO45 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] B
gi|218367488|emb|CAR05270.1| DNA ligase, NAD(+)-dependent [Escherichia coli S88]
gi|307628720|gb|ADN73024.1| NAD-dependent DNA ligase LigB [Escherichia coli UM146]
Length = 560
Score = 40.2 bits (93), Expect = 0.085, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 26 SPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF 75
>gi|166226369|sp|Q0SYH4|LIGB_SHIF8 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] B
Length = 560
Score = 40.2 bits (93), Expect = 0.085, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 26 SPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF 75
>gi|166226367|sp|Q3YW09|LIGB_SHISS RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] B
Length = 560
Score = 40.2 bits (93), Expect = 0.085, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 26 SPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF 75
>gi|157158891|ref|YP_001465128.1| NAD-dependent DNA ligase LigB [Escherichia coli E24377A]
gi|331670488|ref|ZP_08371327.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
[Escherichia coli TA271]
gi|331679739|ref|ZP_08380409.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
[Escherichia coli H591]
gi|157080921|gb|ABV20629.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli E24377A]
gi|331062550|gb|EGI34470.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
[Escherichia coli TA271]
gi|331072911|gb|EGI44236.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
[Escherichia coli H591]
Length = 562
Score = 40.2 bits (93), Expect = 0.085, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 28 SPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF 77
>gi|300919785|ref|ZP_07136260.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
MS 115-1]
gi|300413138|gb|EFJ96448.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
MS 115-1]
Length = 561
Score = 40.2 bits (93), Expect = 0.085, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 27 SPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF 76
>gi|110807676|ref|YP_691196.1| NAD-dependent DNA ligase LigB [Shigella flexneri 5 str. 8401]
gi|110617224|gb|ABF05891.1| putative enzyme [Shigella flexneri 5 str. 8401]
Length = 562
Score = 40.2 bits (93), Expect = 0.085, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 28 SPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF 77
>gi|91213164|ref|YP_543150.1| NAD-dependent DNA ligase LigB [Escherichia coli UTI89]
gi|117625919|ref|YP_859242.1| NAD-dependent DNA ligase LigB [Escherichia coli APEC O1]
gi|237703441|ref|ZP_04533922.1| NAD-dependent DNA ligase LigB [Escherichia sp. 3_2_53FAA]
gi|91074738|gb|ABE09619.1| hypothetical DNA ligase-like protein YicF [Escherichia coli UTI89]
gi|115515043|gb|ABJ03118.1| NAD-dependent DNA ligase [Escherichia coli APEC O1]
gi|226902705|gb|EEH88964.1| NAD-dependent DNA ligase LigB [Escherichia sp. 3_2_53FAA]
gi|294489423|gb|ADE88179.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli IHE3034]
gi|323949886|gb|EGB45770.1| NAD-dependent DNA ligase adenylation domain-containing protein
[Escherichia coli H252]
gi|323954950|gb|EGB50729.1| NAD-dependent DNA ligase adenylation domain-containing protein
[Escherichia coli H263]
Length = 562
Score = 40.2 bits (93), Expect = 0.085, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 28 SPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF 77
>gi|146229|gb|AAB88710.1| ORF; putative [Escherichia coli]
Length = 218
Score = 40.2 bits (93), Expect = 0.085, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 27 SPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF 76
>gi|74314119|ref|YP_312538.1| NAD-dependent DNA ligase LigB [Shigella sonnei Ss046]
gi|73857596|gb|AAZ90303.1| putative enzyme [Shigella sonnei Ss046]
Length = 562
Score = 40.2 bits (93), Expect = 0.085, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 28 SPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF 77
>gi|30065077|ref|NP_839248.1| NAD-dependent DNA ligase LigB [Shigella flexneri 2a str. 2457T]
gi|56480394|ref|NP_709426.2| NAD-dependent DNA ligase LigB [Shigella flexneri 2a str. 301]
gi|81839371|sp|Q83PM9|LIGB_SHIFL RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] B
gi|30043338|gb|AAP19059.1| putative enzyme [Shigella flexneri 2a str. 2457T]
gi|56383945|gb|AAN45133.2| putative enzyme [Shigella flexneri 2a str. 301]
gi|332751117|gb|EGJ81520.1| NAD-dependent DNA ligase adenylation domain protein [Shigella
flexneri 2747-71]
Length = 560
Score = 40.2 bits (93), Expect = 0.085, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 26 SPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF 75
>gi|26250293|ref|NP_756333.1| NAD-dependent DNA ligase LigB [Escherichia coli CFT073]
gi|26110723|gb|AAN82907.1|AE016769_22 Hypothetical DNA ligase-like protein yicF [Escherichia coli CFT073]
Length = 562
Score = 40.2 bits (93), Expect = 0.085, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 28 SPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF 77
>gi|89110365|ref|AP_004145.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr.
W3110]
gi|90111628|ref|NP_418104.2| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr.
MG1655]
gi|170083154|ref|YP_001732474.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr.
DH10B]
gi|238902738|ref|YP_002928534.1| DNA ligase, NAD(+)-dependent [Escherichia coli BW2952]
gi|401583|sp|P25772|LIGB_ECOLI RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] B
gi|226737617|sp|B1X980|LIGB_ECODH RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] B
gi|259494925|sp|C4ZXN9|LIGB_ECOBW RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] B
gi|85676396|dbj|BAE77646.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K12 substr.
W3110]
gi|87082305|gb|AAC76671.2| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr.
MG1655]
gi|169890989|gb|ACB04696.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr.
DH10B]
gi|238860823|gb|ACR62821.1| DNA ligase, NAD(+)-dependent [Escherichia coli BW2952]
gi|260447334|gb|ACX37756.1| DNA ligase (NAD(+)) [Escherichia coli DH1]
gi|309704049|emb|CBJ03395.1| putative DNA ligase [Escherichia coli ETEC H10407]
gi|315138229|dbj|BAJ45388.1| NAD-dependent DNA ligase LigB [Escherichia coli DH1]
gi|332345636|gb|AEE58970.1| conserved hypothetical protein [Escherichia coli UMNK88]
Length = 560
Score = 40.2 bits (93), Expect = 0.085, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 26 SPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF 75
>gi|254038848|ref|ZP_04872900.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
gi|290497|gb|AAA62000.1| f562 [Escherichia coli]
gi|226838813|gb|EEH70840.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
Length = 562
Score = 40.2 bits (93), Expect = 0.085, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 28 SPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF 77
>gi|297183498|gb|ADI19628.1| NAD-dependent DNA ligase (contains brct domain type II) [uncultured
delta proteobacterium HF0770_45N15]
Length = 655
Score = 40.2 bits (93), Expect = 0.097, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
M + LV+ YY D D YD + +L+AL+ Q E P
Sbjct: 1 MSKTTDLVQRVHDLNHDYYC-DVATVPDVEYDGLVSQLNALEAQVGESLANVSP 53
>gi|193070347|ref|ZP_03051289.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli E110019]
gi|192956286|gb|EDV86747.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli E110019]
Length = 577
Score = 40.2 bits (93), Expect = 0.099, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 30/83 (36%), Gaps = 4/83 (4%)
Query: 26 KLLTLEAKFLPNKRALESWLDKAKKV----TSLSKGEAMIEVEYLVKIALHHQKWYYRLD 81
L T E K L S L V + S A E+ L + Y++
Sbjct: 10 SLTTAEVKMKVWMAILISILCWQSSVWAVCPAWSPARAQEEIFRLQQQIKQWDDDYWKEG 69
Query: 82 NPLFTDGLYDRVSERLDALQEQF 104
DG+YD++S RL Q F
Sbjct: 70 KSEVEDGVYDQLSARLTQWQRCF 92
>gi|187775663|ref|ZP_02992667.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
EC4196]
gi|188024760|ref|ZP_02997228.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
EC4113]
gi|189010103|ref|ZP_02804810.2| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
EC4076]
gi|189401811|ref|ZP_03006485.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
EC4401]
gi|189402714|ref|ZP_03006814.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
EC4486]
gi|189403713|ref|ZP_03007195.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
EC4501]
gi|189404723|ref|ZP_02810531.2| NAD-dependent DNA ligase adenylation domain [Escherichia coli
O157:H7 str. EC869]
gi|189405711|ref|ZP_03007918.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
EC508]
gi|208809321|ref|ZP_03251658.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
EC4206]
gi|208814147|ref|ZP_03255476.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
EC4045]
gi|208820627|ref|ZP_03260947.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
EC4042]
gi|209397991|ref|YP_002273126.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
EC4115]
gi|217325818|ref|ZP_03441902.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
TW14588]
gi|187771517|gb|EDU35361.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
EC4196]
gi|188016999|gb|EDU55121.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
EC4113]
gi|189002376|gb|EDU71362.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
EC4076]
gi|189358909|gb|EDU77328.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
EC4401]
gi|189364410|gb|EDU82829.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
EC4486]
gi|189369721|gb|EDU88137.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
EC4501]
gi|189374635|gb|EDU93051.1| NAD-dependent DNA ligase adenylation domain [Escherichia coli
O157:H7 str. EC869]
gi|189378779|gb|EDU97195.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
EC508]
gi|208729122|gb|EDZ78723.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
EC4206]
gi|208735424|gb|EDZ84111.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
EC4045]
gi|208740750|gb|EDZ88432.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
EC4042]
gi|209159391|gb|ACI36824.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
EC4115]
gi|217322039|gb|EEC30463.1| NAD(+)-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
TW14588]
Length = 577
Score = 40.2 bits (93), Expect = 0.099, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 30/83 (36%), Gaps = 4/83 (4%)
Query: 26 KLLTLEAKFLPNKRALESWLDKAKKV----TSLSKGEAMIEVEYLVKIALHHQKWYYRLD 81
L T E K L S L V + S A E+ L + Y++
Sbjct: 10 SLTTAEVKMKVWMAILISILCWQSSVWAVCPAWSPARAQEEIFRLQQQIKQWDDDYWKEG 69
Query: 82 NPLFTDGLYDRVSERLDALQEQF 104
DG+YD++S RL Q F
Sbjct: 70 KSEVEDGVYDQLSARLTQWQRCF 92
>gi|291448912|ref|ZP_06588302.1| DNA ligase [Streptomyces roseosporus NRRL 15998]
gi|291351859|gb|EFE78763.1| DNA ligase [Streptomyces roseosporus NRRL 15998]
Length = 710
Score = 40.2 bits (93), Expect = 0.10, Method: Composition-based stats.
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 85 FTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
D YDR++ + A + PE P V
Sbjct: 38 LDDDAYDRLARGIAAYEADHPEEVLAASPTGKV 70
>gi|262276888|ref|ZP_06054681.1| DNA ligase, NAD-dependent [alpha proteobacterium HIMB114]
gi|262223991|gb|EEY74450.1| DNA ligase, NAD-dependent [alpha proteobacterium HIMB114]
Length = 672
Score = 40.2 bits (93), Expect = 0.10, Method: Composition-based stats.
Identities = 10/42 (23%), Positives = 20/42 (47%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQE 102
E + + K+YY ++P D YDR+ ++L ++
Sbjct: 6 KEYQEKKNKLFEYNKFYYDKNSPKIDDATYDRLKKQLIFYEK 47
>gi|239945456|ref|ZP_04697393.1| putative NAD-dependent DNA ligase [Streptomyces roseosporus NRRL
15998]
gi|239991920|ref|ZP_04712584.1| putative NAD-dependent DNA ligase [Streptomyces roseosporus NRRL
11379]
Length = 702
Score = 40.2 bits (93), Expect = 0.10, Method: Composition-based stats.
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 85 FTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
D YDR++ + A + PE P V
Sbjct: 30 LDDDAYDRLARGIAAYEADHPEEVLAASPTGKV 62
>gi|260495084|ref|ZP_05815213.1| DNA ligase, NAD-dependent [Fusobacterium sp. 3_1_33]
gi|260197527|gb|EEW95045.1| DNA ligase, NAD-dependent [Fusobacterium sp. 3_1_33]
Length = 696
Score = 39.8 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 18/86 (20%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 35 LPNKRALESWLDKAKKVTSLSKGEA--MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDR 92
+ K+ +E + +T S E + ++ L + ++ YY + L +D +D
Sbjct: 1 MEIKKRIEELKNNQTGLTLYSSQELNDLEKIVKLREDLDKYRNSYYNDNISLISDYEFDM 60
Query: 93 VSERLDALQEQFPELFDEDHPWNTVG 118
+ + L++L+E++P+ + P +VG
Sbjct: 61 LLKELESLEEKYPQYKEISSPTTSVG 86
>gi|254303498|ref|ZP_04970856.1| DNA ligase (NAD(+)) [Fusobacterium nucleatum subsp. polymorphum
ATCC 10953]
gi|148323690|gb|EDK88940.1| DNA ligase (NAD(+)) [Fusobacterium nucleatum subsp. polymorphum
ATCC 10953]
Length = 696
Score = 39.8 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 13/58 (22%), Positives = 31/58 (53%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L + ++ YY + L +D +D + + L++L+E++P+ + P +VG
Sbjct: 29 EKIVKLREDLDKYRDSYYNDNKSLISDYEFDILLKELESLEEKYPQYKETSSPTTSVG 86
>gi|311277433|ref|YP_003939664.1| DNA ligase (NAD(+)) [Enterobacter cloacae SCF1]
gi|308746628|gb|ADO46380.1| DNA ligase (NAD(+)) [Enterobacter cloacae SCF1]
Length = 556
Score = 39.8 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 13/55 (23%), Positives = 22/55 (40%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
+A E+ L + Y+R +D +YD++S RL Q F +
Sbjct: 25 PAKAEQEMAALNAQLTRWSEAYWREGASAVSDEVYDQLSARLKQWQRCFSQERTA 79
>gi|300939287|ref|ZP_07153961.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia
coli MS 21-1]
gi|300455794|gb|EFK19287.1| NAD-dependent DNA ligase adenylation domain protein [Escherichia
coli MS 21-1]
Length = 209
Score = 39.8 bits (92), Expect = 0.12, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 40 ALESWLDKAKKV-TSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLD 98
++ W A V + S A E+ L + Y++ DG+YD++S RL
Sbjct: 11 SILCWQSSALAVCPAWSLARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLT 70
Query: 99 ALQEQF 104
Q F
Sbjct: 71 QWQRCF 76
>gi|331685309|ref|ZP_08385895.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
[Escherichia coli H299]
gi|331077680|gb|EGI48892.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
[Escherichia coli H299]
Length = 561
Score = 39.8 bits (92), Expect = 0.12, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 22/52 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
S A E+ L + Y++ DG+YD++S RL Q F E
Sbjct: 26 SPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGIYDQLSARLTQWQRCFGE 77
>gi|282864620|ref|ZP_06273675.1| DNA ligase, NAD-dependent [Streptomyces sp. ACTE]
gi|282560559|gb|EFB66106.1| DNA ligase, NAD-dependent [Streptomyces sp. ACTE]
Length = 709
Score = 39.8 bits (92), Expect = 0.12, Method: Composition-based stats.
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 84 LFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
L D YDR++ + A + + P+ P V
Sbjct: 43 LLDDDAYDRLARGIAAYEAEHPQEVLAASPTGKV 76
>gi|330874636|gb|EGH08785.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
Length = 561
Score = 39.5 bits (91), Expect = 0.15, Method: Composition-based stats.
Identities = 12/59 (20%), Positives = 22/59 (37%)
Query: 40 ALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLD 98
L + A + S +A E+ L + Y+ D LYD+ ++L+
Sbjct: 14 TLFTAFSHASQCPDWSHAKASSEITALQQQIAKWDDSYHLQGLSQIPDELYDQSRQKLN 72
>gi|295095236|emb|CBK84326.1| NAD-dependent DNA ligase (contains BRCT domain type II)
[Enterobacter cloacae subsp. cloacae NCTC 9394]
Length = 556
Score = 39.5 bits (91), Expect = 0.15, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S +A E+ L Y++ + +D +YDR++ RL Q F
Sbjct: 24 SPAKAGQEIAALKAQLTRWNDDYWKQGSSEVSDDVYDRLNARLKQWQRCF 73
>gi|293393631|ref|ZP_06637941.1| NAD-dependent DNA ligase adenylation domain protein [Serratia
odorifera DSM 4582]
gi|291423966|gb|EFE97185.1| NAD-dependent DNA ligase adenylation domain protein [Serratia
odorifera DSM 4582]
Length = 566
Score = 39.5 bits (91), Expect = 0.15, Method: Composition-based stats.
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLD 98
E+ L + YY+ L D LYD + ++L
Sbjct: 37 EMTALEQQLTRWDVAYYQQGQGLIDDELYDSLRQKLR 73
>gi|299145804|ref|ZP_07038872.1| putative BRCA1 C Terminus (BRCT) domain protein [Bacteroides sp.
3_1_23]
gi|298516295|gb|EFI40176.1| putative BRCA1 C Terminus (BRCT) domain protein [Bacteroides sp.
3_1_23]
Length = 652
Score = 39.5 bits (91), Expect = 0.16, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 66 LVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDAL 100
L+ + H Y R+ P +D YD E L L
Sbjct: 13 LLDMIKRHNNMY-RMGTPEISDAEYDAEIELLKTL 46
>gi|37524304|ref|NP_927648.1| NAD-dependent DNA ligase LigB [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|81420505|sp|Q7N9N4|LIGB_PHOLL RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] B
gi|36783727|emb|CAE12581.1| unnamed protein product [Photorhabdus luminescens subsp.
laumondii TTO1]
Length = 580
Score = 39.5 bits (91), Expect = 0.16, Method: Composition-based stats.
Identities = 10/52 (19%), Positives = 20/52 (38%)
Query: 46 DKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERL 97
+ K S+ + E L++ H + Y + D +YD++ L
Sbjct: 26 NTEKNCPEWSQDKLQRETNSLMQQMAHWDQLYRQKGISEIDDEVYDQLMSEL 77
>gi|288932991|ref|YP_003437050.1| DNA ligase (NAD(+)) [Klebsiella variicola At-22]
gi|288887720|gb|ADC56038.1| DNA ligase (NAD(+)) [Klebsiella variicola At-22]
Length = 558
Score = 39.5 bits (91), Expect = 0.16, Method: Composition-based stats.
Identities = 13/56 (23%), Positives = 26/56 (46%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
E+ L + + ++ Y+R +D +YD+++ RL ++ FP ED
Sbjct: 26 PARGRQEISRLHQQIVAWKEDYWRQGASEVSDEVYDQLTLRLTQWRQCFPGATPED 81
>gi|301018976|ref|ZP_07183199.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
MS 69-1]
gi|300399470|gb|EFJ83008.1| NAD-dependent DNA ligase OB-fold domain protein [Escherichia coli
MS 69-1]
Length = 561
Score = 39.5 bits (91), Expect = 0.17, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 27 SPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGIYDQLSARLTQWQRCF 76
>gi|167767031|ref|ZP_02439084.1| hypothetical protein CLOSS21_01549 [Clostridium sp. SS2/1]
gi|167711006|gb|EDS21585.1| hypothetical protein CLOSS21_01549 [Clostridium sp. SS2/1]
gi|291559629|emb|CBL38429.1| NAD-dependent DNA ligase (contains BRCT domain type II)
[butyrate-producing bacterium SSC/2]
Length = 509
Score = 39.5 bits (91), Expect = 0.17, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 26 KLLTLEAKFLPNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLF 85
K LT + KF N+R + K + T+ SK +E L + + + YY+ +
Sbjct: 388 KALTKKKKF--NERGYTDKMFKPRSSTTNSKLSIKDRIELLQRKIILNSIAYYKYNKSPM 445
Query: 86 TDGLYDRVSERLDALQEQFP 105
+D YD + + L +Q+++P
Sbjct: 446 SDKAYDEMCKELVDMQKKYP 465
>gi|332282582|ref|ZP_08394995.1| NAD-dependent DNA ligase LigB [Shigella sp. D9]
gi|323944100|gb|EGB40180.1| NAD-dependent DNA ligase adenylation domain-containing protein
[Escherichia coli H120]
gi|332104934|gb|EGJ08280.1| NAD-dependent DNA ligase LigB [Shigella sp. D9]
Length = 562
Score = 39.5 bits (91), Expect = 0.17, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 28 SPARAQEEIFRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF 77
>gi|291285018|ref|YP_003501836.1| DNA ligase B [Escherichia coli O55:H7 str. CB9615]
gi|290764891|gb|ADD58852.1| DNA ligase B [Escherichia coli O55:H7 str. CB9615]
gi|320644993|gb|EFX14023.1| NAD-dependent DNA ligase LigB [Escherichia coli O157:H- str.
493-89]
gi|320650260|gb|EFX18749.1| NAD-dependent DNA ligase LigB [Escherichia coli O157:H- str. H
2687]
gi|320655612|gb|EFX23540.1| NAD-dependent DNA ligase LigB [Escherichia coli O55:H7 str. 3256-97
TW 07815]
gi|320661346|gb|EFX28770.1| NAD-dependent DNA ligase LigB [Escherichia coli O55:H7 str. USDA
5905]
gi|320666360|gb|EFX33359.1| NAD-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
LSU-61]
Length = 560
Score = 39.5 bits (91), Expect = 0.17, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 26 SPARAQEEIFRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF 75
>gi|256021349|ref|ZP_05435214.1| NAD-dependent DNA ligase LigB [Shigella sp. D9]
Length = 560
Score = 39.5 bits (91), Expect = 0.17, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 26 SPARAQEEIFRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF 75
>gi|209754568|gb|ACI75591.1| putative enzyme [Escherichia coli]
gi|209754574|gb|ACI75594.1| putative enzyme [Escherichia coli]
Length = 562
Score = 39.5 bits (91), Expect = 0.17, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 28 SPARAQEEIFRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF 77
>gi|161367494|ref|NP_290227.2| NAD-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
EDL933]
Length = 560
Score = 39.5 bits (91), Expect = 0.17, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 26 SPARAQEEIFRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF 75
>gi|38704188|ref|NP_312549.2| NAD-dependent DNA ligase LigB [Escherichia coli O157:H7 str. Sakai]
gi|195936208|ref|ZP_03081590.1| NAD-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
EC4024]
gi|254795602|ref|YP_003080439.1| NAD-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
TW14359]
gi|261224170|ref|ZP_05938451.1| NAD-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
FRIK2000]
gi|261254780|ref|ZP_05947313.1| NAD-dependent DNA ligase LigB [Escherichia coli O157:H7 str.
FRIK966]
gi|166226377|sp|Q8XD89|LIGB_ECO57 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] B
gi|257096607|sp|B5YWE6|LIGB_ECO5E RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] B
gi|254595002|gb|ACT74363.1| DNA ligase, NAD(+)-dependent [Escherichia coli O157:H7 str.
TW14359]
gi|320639554|gb|EFX09162.1| NAD-dependent DNA ligase LigB [Escherichia coli O157:H7 str. G5101]
gi|326337353|gb|EGD61188.1| DNA ligase , LigB [Escherichia coli O157:H7 str. 1044]
Length = 560
Score = 39.5 bits (91), Expect = 0.17, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 26 SPARAQEEIFRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF 75
>gi|12518406|gb|AAG58791.1|AE005592_2 putative enzyme [Escherichia coli O157:H7 str. EDL933]
Length = 562
Score = 39.5 bits (91), Expect = 0.17, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 28 SPARAQEEIFRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF 77
>gi|13363997|dbj|BAB37945.1| putative enzyme [Escherichia coli O157:H7 str. Sakai]
gi|209754570|gb|ACI75592.1| putative enzyme [Escherichia coli]
gi|209754572|gb|ACI75593.1| putative enzyme [Escherichia coli]
gi|209754576|gb|ACI75595.1| putative enzyme [Escherichia coli]
Length = 562
Score = 39.5 bits (91), Expect = 0.17, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 28 SPARAQEEIFRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF 77
>gi|290511785|ref|ZP_06551153.1| DNA ligase (NAD+) [Klebsiella sp. 1_1_55]
gi|289775575|gb|EFD83575.1| DNA ligase (NAD+) [Klebsiella sp. 1_1_55]
Length = 559
Score = 39.5 bits (91), Expect = 0.17, Method: Composition-based stats.
Identities = 13/56 (23%), Positives = 26/56 (46%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
E+ L + + ++ Y+R +D +YD+++ RL ++ FP ED
Sbjct: 26 PARGRQEISRLHQQIVAWKEDYWRQGASEVSDEVYDQLTLRLAQWRQCFPGATPED 81
>gi|331665272|ref|ZP_08366173.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
[Escherichia coli TA143]
gi|331057782|gb|EGI29768.1| DNA ligase B (Polydeoxyribonucleotide synthase [NAD+] B)
[Escherichia coli TA143]
Length = 560
Score = 39.5 bits (91), Expect = 0.18, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 20/49 (40%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
A E+ L + Y++ DG+YD++S RL Q F
Sbjct: 27 PARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF 75
>gi|77461491|ref|YP_350998.1| NAD-dependent DNA ligase LigB [Pseudomonas fluorescens Pf0-1]
gi|123772014|sp|Q3K5E7|LIGB_PSEPF RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] B
gi|77385494|gb|ABA77007.1| putative exported DNA-ligase protein [Pseudomonas fluorescens
Pf0-1]
Length = 558
Score = 39.1 bits (90), Expect = 0.18, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 26/72 (36%), Gaps = 6/72 (8%)
Query: 48 AKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF--- 104
A + A EV L + Y+R + D LYD+ RL+ ++ F
Sbjct: 21 ADDCPDWAAARASSEVVALQQQIDRWDDAYHREGRSVIADELYDQSRLRLNQWRQCFNLP 80
Query: 105 --PE-LFDEDHP 113
PE L P
Sbjct: 81 SPPEPLRTASGP 92
>gi|311747943|ref|ZP_07721728.1| DNA ligase, NAD-dependent [Algoriphagus sp. PR1]
gi|126574913|gb|EAZ79271.1| DNA ligase, NAD-dependent [Algoriphagus sp. PR1]
Length = 51
Score = 39.1 bits (90), Expect = 0.19, Method: Composition-based stats.
Identities = 11/47 (23%), Positives = 21/47 (44%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDAL 100
++ EA + L K H + YY D + +D +++ L+ L
Sbjct: 1 MNHQEAAQRIAQLSKEIDHPNQLYYMEDQAVISDFEFNQSRNDLNLL 47
>gi|312170612|emb|CBX78875.1| putative NAD-dependent DNA ligase [Erwinia amylovora ATCC BAA-2158]
Length = 554
Score = 39.1 bits (90), Expect = 0.19, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 18/50 (36%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + YYR D YD + ++L Q F
Sbjct: 23 SPSRADAEIAALKAQLEKWDEAYYRRGEAQVPDERYDTLHDKLQQWQRCF 72
>gi|292486544|ref|YP_003529410.1| putative NAD-dependent DNA ligase [Erwinia amylovora CFBP1430]
gi|292897779|ref|YP_003537148.1| DNA ligase [Erwinia amylovora ATCC 49946]
gi|291197627|emb|CBJ44721.1| putative DNA ligase [Erwinia amylovora ATCC 49946]
gi|291551957|emb|CBA18994.1| putative NAD-dependent DNA ligase [Erwinia amylovora CFBP1430]
Length = 554
Score = 39.1 bits (90), Expect = 0.20, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 18/50 (36%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L + YYR D YD + ++L Q F
Sbjct: 23 SPSRADAEIAALKAQLEKWDEAYYRRGEAQVPDERYDTLHDKLQQWQRCF 72
>gi|294784746|ref|ZP_06750034.1| DNA ligase, NAD-dependent [Fusobacterium sp. 3_1_27]
gi|294486460|gb|EFG33822.1| DNA ligase, NAD-dependent [Fusobacterium sp. 3_1_27]
Length = 696
Score = 39.1 bits (90), Expect = 0.21, Method: Composition-based stats.
Identities = 13/58 (22%), Positives = 31/58 (53%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L + ++ YY + L +D +D + + L++L+E++P+ + P +VG
Sbjct: 29 EKIVKLREDLDKYRNSYYNDNISLISDYEFDMLLKELESLEEKYPQYKEISSPTTSVG 86
>gi|146284243|ref|YP_001174396.1| NAD-dependent DNA ligase LigB [Pseudomonas stutzeri A1501]
gi|145572448|gb|ABP81554.1| DNA ligase, NAD-dependent, putative [Pseudomonas stutzeri A1501]
Length = 597
Score = 39.1 bits (90), Expect = 0.21, Method: Composition-based stats.
Identities = 17/83 (20%), Positives = 26/83 (31%), Gaps = 5/83 (6%)
Query: 21 PAQWKKLLTLEAKFLPNKRALESWLDKAKKV-----TSLSKGEAMIEVEYLVKIALHHQK 75
PA + A+ L R + L + A E+ L
Sbjct: 29 PASAGRAPVTRARMLAMPRLITLSLCLFAPACLATCPNWDDARARQEIHQLQAQLAQWDD 88
Query: 76 WYYRLDNPLFTDGLYDRVSERLD 98
Y+R L D +YD+ +LD
Sbjct: 89 AYHRRGQSLVDDEIYDQSRAQLD 111
>gi|206576543|ref|YP_002235985.1| NAD(+)-dependent DNA ligase LigB [Klebsiella pneumoniae 342]
gi|257096557|sp|B5XTF0|LIGB_KLEP3 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] B
gi|206565601|gb|ACI07377.1| NAD(+)-dependent DNA ligase LigB [Klebsiella pneumoniae 342]
Length = 558
Score = 39.1 bits (90), Expect = 0.21, Method: Composition-based stats.
Identities = 13/56 (23%), Positives = 26/56 (46%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
E+ L + + ++ Y+R +D +YD+++ RL ++ FP ED
Sbjct: 26 PARGRQEISRLHQQIVAWKEDYWRQGASEVSDEVYDQLTLRLAQWRQCFPGTTPED 81
>gi|253987704|ref|YP_003039060.1| NAD-dependent DNA ligase LigB [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|253779154|emb|CAQ82314.1| similar to putative dna ligase-like protein yicf of escherichia
coli [Photorhabdus asymbiotica]
Length = 578
Score = 39.1 bits (90), Expect = 0.22, Method: Composition-based stats.
Identities = 10/62 (16%), Positives = 22/62 (35%)
Query: 37 NKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSER 96
L+ K + S+ + E + L++ + Y + D +YD++
Sbjct: 15 TPVVATETLNTEKDCPAWSQDKLQRETKSLMQQMARWDQLYRQKGISEIDDEVYDQLMAD 74
Query: 97 LD 98
L
Sbjct: 75 LI 76
>gi|237742800|ref|ZP_04573281.1| NAD-dependent DNA ligase [Fusobacterium sp. 4_1_13]
gi|229430448|gb|EEO40660.1| NAD-dependent DNA ligase [Fusobacterium sp. 4_1_13]
Length = 696
Score = 39.1 bits (90), Expect = 0.22, Method: Composition-based stats.
Identities = 13/58 (22%), Positives = 31/58 (53%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L + ++ YY + L +D +D + + L++L+E++P+ + P +VG
Sbjct: 29 EKIVKLREDLDKYRNSYYNDNISLISDYEFDMLLKELESLEEKYPQYKEISSPTTSVG 86
>gi|188532209|ref|YP_001906006.1| NAD-dependent DNA ligase LigB [Erwinia tasmaniensis Et1/99]
gi|188027251|emb|CAO95090.1| Putative NAD-dependent DNA ligase [Erwinia tasmaniensis Et1/99]
Length = 561
Score = 39.1 bits (90), Expect = 0.22, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 22/62 (35%), Gaps = 2/62 (3%)
Query: 43 SWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQE 102
S + V S S+ +A E+ L YYR D YD + +L Q
Sbjct: 13 SAIQAQCPVWSASRADA--EISALQAQLEKWDDAYYRRGESPIPDEQYDTLHGKLRQWQR 70
Query: 103 QF 104
F
Sbjct: 71 CF 72
>gi|330989493|gb|EGH87596.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv.
lachrymans str. M301315]
Length = 561
Score = 39.1 bits (90), Expect = 0.22, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 22/57 (38%)
Query: 41 LESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERL 97
L L A + S +A EV L + Y+R D LYD+ ++L
Sbjct: 15 LLPGLGHANQCPDWSAAKARSEVTALQQQVAAWDDSYHRQGLSKIPDELYDQARQKL 71
>gi|307565636|ref|ZP_07628114.1| NAD-dependent DNA ligase domain protein [Prevotella amnii CRIS
21A-A]
gi|307345668|gb|EFN91027.1| NAD-dependent DNA ligase domain protein [Prevotella amnii CRIS
21A-A]
Length = 676
Score = 39.1 bits (90), Expect = 0.22, Method: Composition-based stats.
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
+E LV + YY + TD +D + L ++++ + P N V
Sbjct: 6 RKRMEELVLCLNNASDAYYNGKGEIMTDFEWDAAFDELKKIEKEL-GIILPSSPTNNV 62
>gi|256846124|ref|ZP_05551582.1| DNA ligase, NAD-dependent [Fusobacterium sp. 3_1_36A2]
gi|256719683|gb|EEU33238.1| DNA ligase, NAD-dependent [Fusobacterium sp. 3_1_36A2]
Length = 696
Score = 39.1 bits (90), Expect = 0.22, Method: Composition-based stats.
Identities = 13/58 (22%), Positives = 31/58 (53%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVG 118
++ L + ++ YY + L +D +D + + L++L+E++P+ + P +VG
Sbjct: 29 EKIVKLREDLDKYRNSYYNDNISLISDYEFDMLLKELESLEEKYPQYKEISSPTTSVG 86
>gi|331014918|gb|EGH94974.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 561
Score = 39.1 bits (90), Expect = 0.23, Method: Composition-based stats.
Identities = 13/59 (22%), Positives = 22/59 (37%)
Query: 40 ALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLD 98
+ L A + S A E+ L + Y+R D LYD+ ++L+
Sbjct: 14 TFFTTLSHASQCPDWSHARASSEITALQQQIASWDDSYHRQGLSQIPDELYDQSRQKLN 72
>gi|213967844|ref|ZP_03395991.1| DNA ligase, NAD-dependent [Pseudomonas syringae pv. tomato T1]
gi|301382481|ref|ZP_07230899.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. tomato
Max13]
gi|302062268|ref|ZP_07253809.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. tomato
K40]
gi|302132915|ref|ZP_07258905.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|213927620|gb|EEB61168.1| DNA ligase, NAD-dependent [Pseudomonas syringae pv. tomato T1]
Length = 563
Score = 39.1 bits (90), Expect = 0.23, Method: Composition-based stats.
Identities = 13/59 (22%), Positives = 22/59 (37%)
Query: 40 ALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLD 98
+ L A + S A E+ L + Y+R D LYD+ ++L+
Sbjct: 16 TFFTTLSHASQCPDWSHARASSEITALQQQIASWDDSYHRQGLSQIPDELYDQSRQKLN 74
>gi|28867612|ref|NP_790231.1| NAD-dependent DNA ligase [Pseudomonas syringae pv. tomato str.
DC3000]
gi|81840358|sp|Q88AK8|LIGB_PSESM RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] B
gi|28850847|gb|AAO53926.1| DNA ligase, NAD-dependent, putative [Pseudomonas syringae pv.
tomato str. DC3000]
Length = 561
Score = 39.1 bits (90), Expect = 0.24, Method: Composition-based stats.
Identities = 13/59 (22%), Positives = 22/59 (37%)
Query: 40 ALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLD 98
+ L A + S A E+ L + Y+R D LYD+ ++L+
Sbjct: 14 TFFTTLSHASQCPDWSHARASSEITALQQQIASWDDSYHRQGLSQIPDELYDQSRQKLN 72
>gi|146309759|ref|YP_001174833.1| NAD-dependent DNA ligase LigB [Enterobacter sp. 638]
gi|257096556|sp|A4W502|LIGB_ENT38 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] B
gi|145316635|gb|ABP58782.1| DNA ligase (NAD(+)) [Enterobacter sp. 638]
Length = 556
Score = 39.1 bits (90), Expect = 0.24, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFP-ELFDEDHP 113
S +A E+ L Y++ +D +YD+++ RL Q+ F E ED P
Sbjct: 24 SHAKAEQEIAGLNAQISRWNDAYWQEGKSDVSDEIYDQLNTRLKQWQQCFNHEPATEDIP 83
>gi|238755583|ref|ZP_04616920.1| DNA ligase B [Yersinia ruckeri ATCC 29473]
gi|238706183|gb|EEP98563.1| DNA ligase B [Yersinia ruckeri ATCC 29473]
Length = 569
Score = 38.7 bits (89), Expect = 0.24, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 47 KAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERL-------DA 99
A + S+ E + E+ + + K Y++ N L D +YD++ +RL A
Sbjct: 20 TASECPEWSEHELVTEIAKMEEQFGQWDKAYHQQGNSLIDDDIYDQLHQRLSHWKSCVKA 79
Query: 100 LQ 101
L+
Sbjct: 80 LE 81
>gi|225389003|ref|ZP_03758727.1| hypothetical protein CLOSTASPAR_02748 [Clostridium asparagiforme
DSM 15981]
gi|225044943|gb|EEG55189.1| hypothetical protein CLOSTASPAR_02748 [Clostridium asparagiforme
DSM 15981]
Length = 421
Score = 38.7 bits (89), Expect = 0.24, Method: Composition-based stats.
Identities = 13/72 (18%), Positives = 26/72 (36%), Gaps = 10/72 (13%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
+++A S E E + +P YD+++ L A++ +
Sbjct: 94 VNQAGSAGQTSGAEPPAEAARPQALI--------VDSDPQM--YTYDQMTRDLQAMEAGY 143
Query: 105 PELFDEDHPWNT 116
P+L D +T
Sbjct: 144 PDLVTLDSLTDT 155
>gi|311068875|ref|YP_003973798.1| hypothetical protein BATR1942_09670 [Bacillus atrophaeus 1942]
gi|310869392|gb|ADP32867.1| hypothetical protein BATR1942_09670 [Bacillus atrophaeus 1942]
Length = 100
Score = 38.7 bits (89), Expect = 0.26, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
+ + L H YY+L+ + D +D S+ L LQE++PE
Sbjct: 9 IGRRRRQILVHSFLYYQLNENIIADHTFDLWSKELVQLQEKYPE 52
>gi|145356969|ref|XP_001422695.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582938|gb|ABP01012.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 755
Score = 38.7 bits (89), Expect = 0.28, Method: Composition-based stats.
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLD 98
H YY P+ +D YD + R D
Sbjct: 2 HDGKYYNDAEPVISDSEYDGMRARYD 27
>gi|322835054|ref|YP_004215081.1| DNA ligase (NAD(+)) [Rahnella sp. Y9602]
gi|321170255|gb|ADW75954.1| DNA ligase (NAD(+)) [Rahnella sp. Y9602]
Length = 565
Score = 38.7 bits (89), Expect = 0.29, Method: Composition-based stats.
Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 4/55 (7%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSER----LDALQEQFPELFDEDH 112
E +L Y++ + D +YD + ++ L + PEL
Sbjct: 38 ETHHLTAQLTQWDAAYHQSGSSPIEDSVYDHLRQKQRLWLQCASQPVPELTVPAS 92
>gi|268569138|ref|XP_002640442.1| C. briggsae CBR-SMG-2 protein [Caenorhabditis briggsae]
gi|187032639|emb|CAP28309.1| CBR-SMG-2 protein [Caenorhabditis briggsae AF16]
Length = 1051
Score = 38.7 bits (89), Expect = 0.29, Method: Composition-based stats.
Identities = 20/123 (16%), Positives = 45/123 (36%), Gaps = 28/123 (22%)
Query: 13 FENEHNITPAQWKKLLTLEAKFLPNKRALESWLDKAKKVTSLSKGE--AMIEVEYLVKIA 70
F+N+ N +P WK ++ ++ L SW+ +++ + L ++
Sbjct: 185 FQNDDNWSPEDWKSVI--------AEKQLLSWIVNVPSEEQVARARKITAQQAIRLEELW 236
Query: 71 LHHQKWYYRLDN---PLFT-----------DG-LYDRVSERLDALQEQFPELFDEDHPWN 115
H + LD+ P D Y ++ L A++ ++ + ++
Sbjct: 237 REHPEA--TLDDLNRPGLDREPDHVQLKYMDAHQYAKIFRPLVAIEAEY-DRRMKESASQ 293
Query: 116 TVG 118
VG
Sbjct: 294 AVG 296
>gi|34764272|ref|ZP_00145116.1| NAD-DEPENDENT DNA LIGASE [Fusobacterium nucleatum subsp. vincentii
ATCC 49256]
gi|27885952|gb|EAA23284.1| NAD-DEPENDENT DNA LIGASE [Fusobacterium nucleatum subsp. vincentii
ATCC 49256]
Length = 99
Score = 38.7 bits (89), Expect = 0.31, Method: Composition-based stats.
Identities = 15/82 (18%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Query: 35 LPNKRALESWLDKAKKVTSLSKGEA--MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDR 92
+ + +E + +T S E + ++ L + ++ YY + L +D +D
Sbjct: 1 MEITKRIEELKNNQTGLTLYSSQELNDLEKIVKLREDLDKYRNSYYNDNISLISDYEFDM 60
Query: 93 VSERLDALQEQFPELFDEDHPW 114
L++L+E++P L +
Sbjct: 61 SLTELESLKEKYPSLRNFSSTT 82
>gi|66048020|ref|YP_237861.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. syringae
B728a]
gi|81307820|sp|Q4ZLZ9|LIGB_PSEU2 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] B
gi|63258727|gb|AAY39823.1| DNA ligase (NAD+) [Pseudomonas syringae pv. syringae B728a]
Length = 561
Score = 38.7 bits (89), Expect = 0.31, Method: Composition-based stats.
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLD 98
+A EV L + Y+R D LYD+ ++L+
Sbjct: 31 AKARSEVTALQQQIAEWDDSYHRQGISQIADELYDQARQKLN 72
>gi|87080443|emb|CAJ76258.1| protein-O-xylosyltransferase [Drosophila persimilis]
Length = 881
Score = 38.3 bits (88), Expect = 0.31, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 9/54 (16%)
Query: 57 GEAMIEVEYLVKIALHHQKWYY--RLDNPLFTDGLYDRVSERLDALQEQFPELF 108
G A+ +V L+K + YY D D Y + +L L+++FP +
Sbjct: 263 GRALRQVHRLLKALYAPEHVYYIHVDD-----DQDY--LYRKLLELEQKFPNIR 309
>gi|253690568|ref|YP_003019758.1| DNA ligase (NAD(+)) [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|259494926|sp|C6DJC3|LIGB_PECCP RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] B
gi|251757146|gb|ACT15222.1| DNA ligase (NAD(+)) [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 562
Score = 38.3 bits (88), Expect = 0.32, Method: Composition-based stats.
Identities = 9/40 (22%), Positives = 18/40 (45%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLD 98
+ E++ L + YY D +YD++ E+L+
Sbjct: 34 SKKEIDALRQQLEQWDDVYYTEGKSPVADDVYDQLREQLN 73
>gi|148259769|ref|YP_001233896.1| DNA ligase, NAD-dependent [Acidiphilium cryptum JF-5]
gi|166215383|sp|A5FWJ5|DNLJ_ACICJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|146401450|gb|ABQ29977.1| DNA ligase, NAD-dependent [Acidiphilium cryptum JF-5]
Length = 682
Score = 38.3 bits (88), Expect = 0.32, Method: Composition-based stats.
Identities = 13/52 (25%), Positives = 22/52 (42%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
+ + LV+ YYR D P+ D YD + ++L+ P+L
Sbjct: 11 PADPKARLAELVERLAAADAAYYRDDAPIMDDAAYDALRREAESLRAAHPDL 62
>gi|330940502|gb|EGH43581.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. pisi str.
1704B]
Length = 561
Score = 38.3 bits (88), Expect = 0.37, Method: Composition-based stats.
Identities = 14/57 (24%), Positives = 22/57 (38%)
Query: 41 LESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERL 97
L L A + S +A E+ L + Y+R D LYD+ ++L
Sbjct: 15 LLPGLGHASQCPDWSAAKARSEITALQQQIAAGDDSYHRQGISQIPDELYDQARQKL 71
>gi|302186902|ref|ZP_07263575.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. syringae
642]
Length = 561
Score = 38.3 bits (88), Expect = 0.38, Method: Composition-based stats.
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERL 97
+A EV L + Y+R D LYD+ ++L
Sbjct: 31 AKARSEVTTLQQQIAAWDDSYHRQGISQIPDELYDQARQKL 71
>gi|294871760|ref|XP_002766028.1| hypothetical protein Pmar_PMAR027229 [Perkinsus marinus ATCC 50983]
gi|239866593|gb|EEQ98745.1| hypothetical protein Pmar_PMAR027229 [Perkinsus marinus ATCC 50983]
Length = 519
Score = 38.3 bits (88), Expect = 0.40, Method: Composition-based stats.
Identities = 12/68 (17%), Positives = 25/68 (36%)
Query: 36 PNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSE 95
P + A L A+ V ++ ++ + + Y ++ D Y + +
Sbjct: 27 PLQPASLQELKTARTVARRNRTRLANLLKRVKTEIATYDHGDYVSEDEDVDDAEYTALCD 86
Query: 96 RLDALQEQ 103
R D L+ Q
Sbjct: 87 REDELERQ 94
>gi|295110374|emb|CBL24327.1| DNA ligase, NAD-dependent [Ruminococcus obeum A2-162]
Length = 624
Score = 37.9 bits (87), Expect = 0.41, Method: Composition-based stats.
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 85 FTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
++ YD + L+ + + + D P VGY
Sbjct: 1 MSNREYDALYNELEQTE-KITGIVLADSPTVRVGY 34
>gi|330955026|gb|EGH55286.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae Cit 7]
Length = 561
Score = 37.9 bits (87), Expect = 0.43, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 25/71 (35%), Gaps = 7/71 (9%)
Query: 34 FLPNKRA-------LESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFT 86
LP R L L A + S +A EV L + Y+R
Sbjct: 1 MLPTSRLMTFALVFLLPGLGHASQCPDWSAAKARSEVTNLQQQMAAWDDSYHRQGISPIP 60
Query: 87 DGLYDRVSERL 97
D LYD+ ++L
Sbjct: 61 DELYDQARQKL 71
>gi|269958073|ref|YP_003327862.1| amidinotransferase [Xylanimonas cellulosilytica DSM 15894]
gi|269306754|gb|ACZ32304.1| amidinotransferase [Xylanimonas cellulosilytica DSM 15894]
Length = 356
Score = 37.9 bits (87), Expect = 0.43, Method: Composition-based stats.
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 40 ALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLD-NPLFTDGLY 90
+ W+D V + A+ + E L + H + +D P D +Y
Sbjct: 36 TINPWMDLTVPVDT---ARAVEQWEALRRTYERHGHTVHVVDPQPGLPDMVY 84
>gi|326403263|ref|YP_004283344.1| DNA ligase [Acidiphilium multivorum AIU301]
gi|325050124|dbj|BAJ80462.1| DNA ligase [Acidiphilium multivorum AIU301]
Length = 682
Score = 37.5 bits (86), Expect = 0.57, Method: Composition-based stats.
Identities = 12/48 (25%), Positives = 20/48 (41%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
+ L++ YYR D P+ D YD + +L+ P+L
Sbjct: 15 KARLAELIERLAAADAAYYRDDAPIMDDAAYDALRREAASLRAAHPDL 62
>gi|317494707|ref|ZP_07953119.1| NAD-dependent DNA ligase adenylation domain-containing protein
[Enterobacteriaceae bacterium 9_2_54FAA]
gi|316917309|gb|EFV38656.1| NAD-dependent DNA ligase adenylation domain-containing protein
[Enterobacteriaceae bacterium 9_2_54FAA]
Length = 571
Score = 37.5 bits (86), Expect = 0.59, Method: Composition-based stats.
Identities = 10/57 (17%), Positives = 25/57 (43%)
Query: 48 AKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
+ A E+ L + + Y+ + +D +YD++++RL + ++ F
Sbjct: 17 QPPCPDWAAERATHEISALQQQMAKWDEAYFLQGSSPVSDEIYDQMAQRLKSWKQCF 73
>gi|296100486|ref|YP_003610632.1| NAD-dependent DNA ligase [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|295054945|gb|ADF59683.1| NAD-dependent DNA ligase [Enterobacter cloacae subsp. cloacae
ATCC 13047]
Length = 556
Score = 37.5 bits (86), Expect = 0.60, Method: Composition-based stats.
Identities = 10/44 (22%), Positives = 18/44 (40%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLD 98
S+ A E+ L Y++ D +YD+++ RL
Sbjct: 24 SQARAEKEIATLSAQIKRWDDAYWQQGISEVNDEVYDQLNGRLK 67
>gi|261823684|ref|YP_003261790.1| NAD-dependent DNA ligase LigB [Pectobacterium wasabiae WPP163]
gi|261607697|gb|ACX90183.1| DNA ligase (NAD(+)) [Pectobacterium wasabiae WPP163]
Length = 563
Score = 37.5 bits (86), Expect = 0.62, Method: Composition-based stats.
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLD 98
E+ L + YY D +YD++ E+L+
Sbjct: 37 KEITALRQQLERWDDVYYTEGKSPVEDDVYDQLREQLN 74
>gi|330980117|gb|EGH78327.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. aptata
str. DSM 50252]
Length = 561
Score = 37.5 bits (86), Expect = 0.62, Method: Composition-based stats.
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERL 97
+A EV L + Y+R D LYD+ ++L
Sbjct: 31 AKAHSEVTALQQQIAAWDDSYHRQGISQIPDELYDQARQKL 71
>gi|330812312|ref|YP_004356774.1| DNA ligase [Pseudomonas brassicacearum subsp. brassicacearum
NFM421]
gi|327380420|gb|AEA71770.1| putative exported DNA-ligase [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 557
Score = 37.5 bits (86), Expect = 0.63, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 24/71 (33%), Gaps = 1/71 (1%)
Query: 48 AKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
A A E+ L + Y+RL D LYD+ +L + F L
Sbjct: 20 AAPCPDWPTERARAEIAALQQQIDTWDDGYHRLGQSPVADELYDQSRAQLGQWRRCF-NL 78
Query: 108 FDEDHPWNTVG 118
D P + G
Sbjct: 79 AAPDDPPRSTG 89
>gi|330972946|gb|EGH73012.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. aceris
str. M302273PT]
Length = 561
Score = 37.5 bits (86), Expect = 0.66, Method: Composition-based stats.
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLD 98
+A E L + Y+R D LYD+ ++L+
Sbjct: 31 AKARSEATALQQQIAEWDDSYHRQGISQIADELYDQARQKLN 72
>gi|327482626|gb|AEA85936.1| NAD-dependent DNA ligase LigB [Pseudomonas stutzeri DSM 4166]
Length = 553
Score = 37.5 bits (86), Expect = 0.67, Method: Composition-based stats.
Identities = 11/44 (25%), Positives = 16/44 (36%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLD 98
A E+ L Y+R L D +YD+ +LD
Sbjct: 24 DDARARQEIHQLQAQLAQWDDAYHRRGQSLVDDEIYDQSRAQLD 67
>gi|166226374|sp|A4VRF3|LIGB_PSEU5 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] B
Length = 556
Score = 37.5 bits (86), Expect = 0.69, Method: Composition-based stats.
Identities = 11/44 (25%), Positives = 16/44 (36%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLD 98
A E+ L Y+R L D +YD+ +LD
Sbjct: 27 DDARARQEIHQLQAQLAQWDDAYHRRGQSLVDDEIYDQSRAQLD 70
>gi|237802303|ref|ZP_04590764.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331025160|gb|EGI05216.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. oryzae
str. 1_6]
Length = 560
Score = 37.1 bits (85), Expect = 0.72, Method: Composition-based stats.
Identities = 12/44 (27%), Positives = 16/44 (36%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLD 98
S A E+ L K Y+R D LYD+ +L
Sbjct: 29 SAARANNEITALQKQIAEWDDSYHRQGVSQIPDELYDQSRLKLK 72
>gi|227327138|ref|ZP_03831162.1| NAD-dependent DNA ligase LigB [Pectobacterium carotovorum subsp.
carotovorum WPP14]
Length = 563
Score = 37.1 bits (85), Expect = 0.72, Method: Composition-based stats.
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLD 98
E++ L YY D +YD++ E+L+
Sbjct: 37 KEIDALRHQLEQWDDVYYTEGKSPIEDDVYDQLREQLN 74
>gi|148238818|ref|YP_001224205.1| dihydrobiliverdin:ferredoxin oxidoreductase [Synechococcus sp. WH
7803]
gi|166219124|sp|A5GIZ3|PEBA_SYNPW RecName: Full=15,16-dihydrobiliverdin:ferredoxin oxidoreductase
gi|147847357|emb|CAK22908.1| 15,16 dihydrobiliverdin:ferredoxin oxidoreductase [Synechococcus
sp. WH 7803]
Length = 241
Score = 37.1 bits (85), Expect = 0.75, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 79 RLD-NPLFTDGLY-DRVSERLDALQEQFPEL 107
LD PL D Y DR + L AL E+FPEL
Sbjct: 97 VLDFQPLIQDQDYLDRHFQGLKALHERFPEL 127
>gi|257482942|ref|ZP_05636983.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. tabaci
ATCC 11528]
gi|331011813|gb|EGH91869.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. tabaci
ATCC 11528]
Length = 561
Score = 37.1 bits (85), Expect = 0.75, Method: Composition-based stats.
Identities = 14/57 (24%), Positives = 21/57 (36%)
Query: 41 LESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERL 97
L L A + +A EV L + Y+R D LYD+ ++L
Sbjct: 15 LLPGLGNASQCPDWPAAKARSEVTNLQQQMAAWDDSYHRQGLSKIPDELYDQARQKL 71
>gi|330891383|gb|EGH24044.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. mori str.
301020]
Length = 561
Score = 37.1 bits (85), Expect = 0.79, Method: Composition-based stats.
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERL 97
+A EV L + Y+R D LYD+ ++L
Sbjct: 31 AKARSEVTALQQQVATWDDSYHRQGLSKIPDELYDQARQKL 71
>gi|149911106|ref|ZP_01899733.1| DNA ligase, NAD-dependent, putative [Moritella sp. PE36]
gi|149805856|gb|EDM65845.1| DNA ligase, NAD-dependent, putative [Moritella sp. PE36]
Length = 413
Score = 37.1 bits (85), Expect = 0.80, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDAL 100
+ YL + H++ YY PL DG +D + + L L
Sbjct: 52 RISYLETQIIKHRRIYYAGQTPLLHDGEFDLLVDELTVL 90
>gi|162453449|ref|YP_001615816.1| protein kinase [Sorangium cellulosum 'So ce 56']
gi|161164031|emb|CAN95336.1| Protein kinase [Sorangium cellulosum 'So ce 56']
Length = 1409
Score = 37.1 bits (85), Expect = 0.85, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 18/76 (23%)
Query: 51 VTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPL-------FTDGLYDRVSER------- 96
V++L + ++E L+ L H+K RL+NP D Y+ +S+R
Sbjct: 895 VSALDGEQVQEDLERLMAADLIHRKR--RLNNPTYQFKHVLIRDAAYESLSKRSRRKVHA 952
Query: 97 --LDALQEQFPELFDE 110
L+ +FPE+
Sbjct: 953 IIARTLEARFPEIVAA 968
>gi|310765950|gb|ADP10900.1| NAD-dependent DNA ligase LigB [Erwinia sp. Ejp617]
Length = 560
Score = 37.1 bits (85), Expect = 0.86, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 16/50 (32%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L YYR D YD + +L Q F
Sbjct: 23 SASRADAEISALEAQLKKWDDAYYRRGESQIPDERYDTLHGKLQQWQRCF 72
>gi|259906726|ref|YP_002647082.1| NAD-dependent DNA ligase LigB [Erwinia pyrifoliae Ep1/96]
gi|224962348|emb|CAX53803.1| NAD-dependent DNA ligase [Erwinia pyrifoliae Ep1/96]
gi|283476511|emb|CAY72326.1| putative NAD-dependent DNA ligase [Erwinia pyrifoliae DSM 12163]
Length = 560
Score = 37.1 bits (85), Expect = 0.86, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 16/50 (32%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ L YYR D YD + +L Q F
Sbjct: 23 SASRADAEISALEAQLKKWDDAYYRRGESQIPDERYDTLHGKLQQWQRCF 72
>gi|15828860|ref|NP_326220.1| DNA ligase (polydeoxyribonucleotide synthase [NAD+]) [Mycoplasma
pulmonis UAB CTIP]
gi|81532955|sp|Q98QH2|DNLJ_MYCPU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|14089803|emb|CAC13562.1| DNA LIGASE (POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD+]) [Mycoplasma
pulmonis]
Length = 679
Score = 37.1 bits (85), Expect = 0.86, Method: Composition-based stats.
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 65 YLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPE 106
L + + YY + L +D YD L+ +++ FPE
Sbjct: 14 ELNEKLKLYNHHYYNKNESLVSDEYYDAKLLELENIRDNFPE 55
>gi|313204854|ref|YP_004043511.1| c-terminal processing peptidase-3 [Paludibacter propionicigenes
WB4]
gi|312444170|gb|ADQ80526.1| C-terminal processing peptidase-3 [Paludibacter propionicigenes
WB4]
Length = 573
Score = 37.1 bits (85), Expect = 0.87, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 14/93 (15%)
Query: 10 SSKFENEHNITPAQWKKLLTLEAKFLPNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKI 69
S KF+N+H + KKLL E K PNK A + +K+K + ++++ L+
Sbjct: 486 SDKFKNDHLVDNELLKKLLNSEKK--PNKNAEPNEFEKSKPL-------IKLQLKALLAR 536
Query: 70 ALHHQKWYYRLDNPLFTDGLYDRVSERLDALQE 102
L + YY+ D + + + ++ LQ
Sbjct: 537 DLWDENAYYQ-----IIDADNESLKKAVEILQT 564
>gi|308505126|ref|XP_003114746.1| CRE-SMG-2 protein [Caenorhabditis remanei]
gi|308258928|gb|EFP02881.1| CRE-SMG-2 protein [Caenorhabditis remanei]
Length = 1067
Score = 36.8 bits (84), Expect = 0.93, Method: Composition-based stats.
Identities = 19/123 (15%), Positives = 45/123 (36%), Gaps = 28/123 (22%)
Query: 13 FENEHNITPAQWKKLLTLEAKFLPNKRALESWLDKAKKVTSLSKGE--AMIEVEYLVKIA 70
F+N+ N +P WK ++ ++ L SW+ +++ + L ++
Sbjct: 184 FQNDDNWSPEDWKSVI--------AEKQLLSWIVNVPSEDQVARARKITATQAVRLEELW 235
Query: 71 LHHQKWYYRLDN---PLFT-----------DG-LYDRVSERLDALQEQFPELFDEDHPWN 115
H + +D+ P D Y ++ L A++ ++ + ++
Sbjct: 236 RDHPEA--TIDDLNKPGLDREPDHVQLKYMDAHQYSKIFRPLVAIEAEY-DRRMKESASQ 292
Query: 116 TVG 118
VG
Sbjct: 293 AVG 295
>gi|329996951|ref|ZP_08302648.1| NAD-dependent DNA ligase OB-fold domain protein [Klebsiella sp. MS
92-3]
gi|328539241|gb|EGF65270.1| NAD-dependent DNA ligase OB-fold domain protein [Klebsiella sp. MS
92-3]
Length = 564
Score = 36.8 bits (84), Expect = 0.93, Method: Composition-based stats.
Identities = 13/56 (23%), Positives = 25/56 (44%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
E L + + ++ Y+R +D +YD+++ RL ++ FP ED
Sbjct: 32 PARGRQETSRLHQQIVAWKEAYWRQGASGVSDDVYDQLTLRLAQWRQCFPGATPED 87
>gi|262045607|ref|ZP_06018626.1| NAD-dependent DNA ligase adenylation domain protein [Klebsiella
pneumoniae subsp. rhinoscleromatis ATCC 13884]
gi|259037033|gb|EEW38285.1| NAD-dependent DNA ligase adenylation domain protein [Klebsiella
pneumoniae subsp. rhinoscleromatis ATCC 13884]
Length = 564
Score = 36.8 bits (84), Expect = 0.93, Method: Composition-based stats.
Identities = 13/56 (23%), Positives = 25/56 (44%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
E L + + ++ Y+R +D +YD+++ RL ++ FP ED
Sbjct: 32 PARGRQETSRLHQQIVAWKEAYWRQGASGVSDDVYDQLTLRLAQWRQCFPGATPED 87
>gi|238897097|ref|YP_002921843.1| NAD-dependent DNA ligase LigB [Klebsiella pneumoniae NTUH-K2044]
gi|238549425|dbj|BAH65776.1| DNA ligase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
Length = 565
Score = 36.8 bits (84), Expect = 0.93, Method: Composition-based stats.
Identities = 13/56 (23%), Positives = 25/56 (44%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
E L + + ++ Y+R +D +YD+++ RL ++ FP ED
Sbjct: 33 PARGRQETSRLHQQIVAWKEAYWRQGASGVSDDVYDQLTLRLAQWRQCFPGATPED 88
>gi|195016732|ref|XP_001984473.1| GH16481 [Drosophila grimshawi]
gi|193897955|gb|EDV96821.1| GH16481 [Drosophila grimshawi]
Length = 884
Score = 36.8 bits (84), Expect = 0.94, Method: Composition-based stats.
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF 108
G A+ +V L++ Q YY D D + +L L+ +FP +
Sbjct: 263 GRALRQVHRLLRALYAPQHVYYIH-----VDARQDYLYRQLLELEPKFPNIR 309
>gi|307543787|ref|YP_003896266.1| NAD-dependent DNA ligase LigB [Halomonas elongata DSM 2581]
gi|307215811|emb|CBV41081.1| NAD-dependent DNA ligase LigB [Halomonas elongata DSM 2581]
Length = 561
Score = 36.8 bits (84), Expect = 1.0, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 29/60 (48%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPW 114
SKG A E+ L ++ Y R + +D +YD+ R +A Q+ FP++ + P
Sbjct: 25 SKGHAERELAALHDRLDAWERAYRRNGSSPVSDDIYDQAQARFEAWQDCFPDISVDPAPT 84
>gi|152972501|ref|YP_001337647.1| NAD-dependent DNA ligase LigB [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|166226364|sp|A6TFP6|LIGB_KLEP7 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] B
gi|150957350|gb|ABR79380.1| DNA ligase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
Length = 564
Score = 36.8 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 13/55 (23%), Positives = 25/55 (45%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
E L + + ++ Y+R +D +YD+++ RL ++ FP ED
Sbjct: 33 ARGRQETSRLHQQIVAWKEAYWRQGASGVSDDVYDQLTLRLAQWRQCFPGATPED 87
>gi|288929935|ref|ZP_06423777.1| aspartate aminotransferase [Prevotella sp. oral taxon 317 str.
F0108]
gi|288328754|gb|EFC67343.1| aspartate aminotransferase [Prevotella sp. oral taxon 317 str.
F0108]
Length = 397
Score = 36.8 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 10/75 (13%)
Query: 7 VFRSSKFENEHNITPAQWKKLLTLEAKFLPNKRALESWLDKAKKVTSLSKGEAMIEVEYL 66
V+ ++ FE ITP Q + +T + K L L S + V S E++ L
Sbjct: 140 VYVNAGFEQNFKITPQQLEAAITPKTKML----ILCSPSNPTGSVYS------KEELKAL 189
Query: 67 VKIALHHQKWYYRLD 81
++ H Y D
Sbjct: 190 AEVIRRHDDLYVLAD 204
>gi|288550204|ref|ZP_05969603.2| hypothetical protein ENTCAN_08224 [Enterobacter cancerogenus ATCC
35316]
gi|288316113|gb|EFC55051.1| NAD-dependent DNA ligase adenylation domain protein [Enterobacter
cancerogenus ATCC 35316]
Length = 548
Score = 36.4 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S+G+A E+ L + + Y++ +D +YD+++ RL Q F
Sbjct: 16 SQGKAEKEIAALSAQKIRWDEAYWKEGTSEVSDEIYDQLTARLAQWQRCF 65
>gi|257485000|ref|ZP_05639041.1| NAD-dependent DNA ligase LigA [Pseudomonas syringae pv. tabaci
ATCC 11528]
Length = 33
Score = 36.4 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 7/29 (24%), Positives = 9/29 (31%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTD 87
+ L H Y+ LD P D
Sbjct: 4 VETRILELRAELDEHNYRYHVLDEPSIPD 32
>gi|225572684|ref|ZP_03781439.1| hypothetical protein RUMHYD_00873 [Blautia hydrogenotrophica DSM
10507]
gi|225039920|gb|EEG50166.1| hypothetical protein RUMHYD_00873 [Blautia hydrogenotrophica DSM
10507]
Length = 622
Score = 36.4 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 9/35 (25%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 85 FTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
++ YDR+ + L L+++ ++ + P VGY
Sbjct: 1 MSNLEYDRLYDELVKLEQE-TKVILANSPTVQVGY 34
>gi|134046257|ref|YP_001097742.1| H+-transporting two-sector ATPase subunit A [Methanococcus
maripaludis C5]
gi|132663882|gb|ABO35528.1| H+-transporting two-sector ATPase, A subunit [Methanococcus
maripaludis C5]
Length = 306
Score = 36.4 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 38 KRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRV 93
K+ +E + K K + ++++ + +++YL ++AL H YY NP YD +
Sbjct: 48 KKTIEEEIKKGKNIYNMARLCRVGKIDYLKELALKHNIEYYDSSNPK----KYDEL 99
>gi|304360722|ref|YP_003856853.1| putative DNA ligase [Clostridium phage phiCTP1]
gi|302495581|gb|ADL40361.1| putative DNA ligase [Clostridium phage phiCTP1]
Length = 118
Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 63 VEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPEL 107
+ + L H YYRLD + D ++ L LQ ++PE+
Sbjct: 29 INRRRRQMLIHSIIYYRLDANIIDDTTFNVWGRELLDLQTKYPEI 73
>gi|300714635|ref|YP_003739438.1| NAD-dependent DNA ligase [Erwinia billingiae Eb661]
gi|299060471|emb|CAX57578.1| Putative NAD-dependent DNA ligase [Erwinia billingiae Eb661]
Length = 563
Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 9/39 (23%), Positives = 12/39 (30%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRV 93
+ A E+ L YYR D YD +
Sbjct: 23 TPARAEQEMNALENQLSAWDDAYYRAGEQKVPDDRYDAL 61
>gi|323193166|gb|EFZ78384.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
Length = 180
Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERL 97
A E+ L + Y++ D +YD++S RL
Sbjct: 27 PARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARL 68
>gi|322612905|gb|EFY09857.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|322618970|gb|EFY15857.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|322625253|gb|EFY22080.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|322630079|gb|EFY26852.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|322634271|gb|EFY31006.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|322635828|gb|EFY32537.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|322642969|gb|EFY39547.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322645038|gb|EFY41569.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|322649862|gb|EFY46285.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|322653069|gb|EFY49404.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|322661112|gb|EFY57340.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|322662399|gb|EFY58612.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|322667277|gb|EFY63443.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|322674346|gb|EFY70439.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|322678446|gb|EFY74507.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322680952|gb|EFY76986.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|322687112|gb|EFY83085.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|323198247|gb|EFZ83353.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|323200865|gb|EFZ85935.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|323206619|gb|EFZ91577.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|323210468|gb|EFZ95354.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|323216243|gb|EGA00971.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|323220466|gb|EGA04920.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|323225330|gb|EGA09564.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|323228444|gb|EGA12575.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|323234265|gb|EGA18353.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|323237250|gb|EGA21317.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|323244769|gb|EGA28773.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|323245856|gb|EGA29846.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323250961|gb|EGA34837.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|323257291|gb|EGA40990.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|323262215|gb|EGA45776.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|323264574|gb|EGA48078.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|323268863|gb|EGA52321.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
Length = 561
Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERL 97
A E+ L + Y++ D +YD++S RL
Sbjct: 27 PARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARL 68
>gi|320326326|gb|EFW82379.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. glycinea
str. B076]
Length = 561
Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 14/58 (24%), Positives = 22/58 (37%)
Query: 41 LESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLD 98
L L A + +A EV L + Y+R D LYD+ ++L+
Sbjct: 15 LLPGLGHASQCPDWPAAKARSEVTNLQQQMAAWNDSYHRQGISHIPDELYDQARQKLN 72
>gi|238910220|ref|ZP_04654057.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
Length = 561
Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERL 97
A E+ L + Y++ D +YD++S RL
Sbjct: 27 PARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARL 68
>gi|238750790|ref|ZP_04612288.1| DNA ligase B [Yersinia rohdei ATCC 43380]
gi|238710934|gb|EEQ03154.1| DNA ligase B [Yersinia rohdei ATCC 43380]
Length = 563
Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 43 SWLDKAKKV-TSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERL 97
+W +AK V S+ A E+ LVK Y++ L D +YD++ ++L
Sbjct: 16 TWEVRAKPVCPEWSEKRASDEINILVKQLNQLDVAYHQQGISLLDDDIYDQLQDKL 71
>gi|168818429|ref|ZP_02830429.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
gi|205344676|gb|EDZ31440.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
gi|320088159|emb|CBY97921.1| DNA ligase Polydeoxyribonucleotide synthase [NAD+] [Salmonella
enterica subsp. enterica serovar Weltevreden str.
2007-60-3289-1]
Length = 561
Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERL 97
A E+ L + Y++ D +YD++S RL
Sbjct: 27 PARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARL 68
>gi|194449070|ref|YP_002047770.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|226737624|sp|B4T9Z1|LIGB_SALHS RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] B
gi|194407374|gb|ACF67593.1| NAD-dependent DNA ligase domain protein [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL476]
Length = 561
Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERL 97
A E+ L + Y++ D +YD++S RL
Sbjct: 27 PARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARL 68
>gi|168241918|ref|ZP_02666850.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL486]
gi|205339075|gb|EDZ25839.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL486]
Length = 561
Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERL 97
A E+ L + Y++ D +YD++S RL
Sbjct: 27 PARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARL 68
>gi|204928646|ref|ZP_03219845.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
enterica subsp. enterica serovar Javiana str.
GA_MM04042433]
gi|204322079|gb|EDZ07277.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
enterica subsp. enterica serovar Javiana str.
GA_MM04042433]
Length = 561
Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERL 97
A E+ L + Y++ D +YD++S RL
Sbjct: 27 PARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARL 68
>gi|197247797|ref|YP_002148670.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|226737620|sp|B5EXF2|LIGB_SALA4 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] B
gi|197211500|gb|ACH48897.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
enterica subsp. enterica serovar Agona str. SL483]
Length = 561
Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERL 97
A E+ L + Y++ D +YD++S RL
Sbjct: 27 PARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARL 68
>gi|167995212|ref|ZP_02576302.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
enterica subsp. enterica serovar 4,[5],12:i:- str.
CVM23701]
gi|205327077|gb|EDZ13841.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
enterica subsp. enterica serovar 4,[5],12:i:- str.
CVM23701]
gi|261248887|emb|CBG26741.1| putative DNA ligase [Salmonella enterica subsp. enterica serovar
Typhimurium str. D23580]
gi|267996002|gb|ACY90887.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|301160276|emb|CBW19799.1| putative DNA ligase [Salmonella enterica subsp. enterica serovar
Typhimurium str. SL1344]
gi|321226792|gb|EFX51842.1| DNA ligase, LigB [Salmonella enterica subsp. enterica serovar
Typhimurium str. TN061786]
gi|323132100|gb|ADX19530.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
enterica subsp. enterica serovar Typhimurium str. 4/74]
gi|332990588|gb|AEF09571.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
Length = 561
Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERL 97
A E+ L + Y++ D +YD++S RL
Sbjct: 27 PARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARL 68
>gi|168235353|ref|ZP_02660411.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
gi|194734322|ref|YP_002116682.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|226737627|sp|B4TZZ8|LIGB_SALSV RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] B
gi|194709824|gb|ACF89045.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|197291581|gb|EDY30933.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
Length = 561
Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERL 97
A E+ L + Y++ D +YD++S RL
Sbjct: 27 PARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARL 68
>gi|168233263|ref|ZP_02658321.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
enterica subsp. enterica serovar Kentucky str. CDC 191]
gi|194470644|ref|ZP_03076628.1| NAD-dependent DNA ligase adenylation domain [Salmonella enterica
subsp. enterica serovar Kentucky str. CVM29188]
gi|194457008|gb|EDX45847.1| NAD-dependent DNA ligase adenylation domain [Salmonella enterica
subsp. enterica serovar Kentucky str. CVM29188]
gi|205332601|gb|EDZ19365.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
enterica subsp. enterica serovar Kentucky str. CDC 191]
Length = 561
Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERL 97
A E+ L + Y++ D +YD++S RL
Sbjct: 27 PARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARL 68
>gi|167549012|ref|ZP_02342771.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA29]
gi|205325606|gb|EDZ13445.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA29]
Length = 561
Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERL 97
A E+ L + Y++ D +YD++S RL
Sbjct: 27 PARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARL 68
>gi|161616820|ref|YP_001590785.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|189046593|sp|A9MVP4|LIGB_SALPB RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] B
gi|161366184|gb|ABX69952.1| hypothetical protein SPAB_04639 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
Length = 561
Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERL 97
A E+ L + Y++ D +YD++S RL
Sbjct: 27 PARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARL 68
>gi|16767024|ref|NP_462639.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|81853648|sp|Q8ZL42|LIGB_SALTY RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] B
gi|16422307|gb|AAL22598.1| putative DNA ligase [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|312914765|dbj|BAJ38739.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
Length = 561
Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERL 97
A E+ L + Y++ D +YD++S RL
Sbjct: 27 PARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARL 68
>gi|195126769|ref|XP_002007843.1| GI12152 [Drosophila mojavensis]
gi|193919452|gb|EDW18319.1| GI12152 [Drosophila mojavensis]
Length = 880
Score = 36.4 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF 108
G A+ +V L++ Q YY D D + +L L+ +FP +
Sbjct: 265 GRALRQVHRLLRALYAPQHIYYIH-----VDARQDYLYRKLLELEPKFPNIR 311
>gi|182435261|ref|YP_001822980.1| putative secreted protease [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|178463777|dbj|BAG18297.1| putative secreted protease [Streptomyces griseus subsp. griseus
NBRC 13350]
Length = 520
Score = 36.0 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 11/40 (27%), Positives = 13/40 (32%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDA 99
E + H Y+ D P YDRV L A
Sbjct: 272 EARWEDFRRWVAKHDDVYHLGDTPASVQQHYDRVRAELAA 311
>gi|298489227|ref|ZP_07007245.1| DNA ligase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
gi|298156246|gb|EFH97348.1| DNA ligase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
Length = 561
Score = 36.0 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLD 98
+A EV L + Y+R D LYD+ ++L+
Sbjct: 31 AKARSEVTNLQQQMAAWDDSYHRQGISHIPDELYDQARQKLN 72
>gi|289623888|ref|ZP_06456842.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. aesculi
str. NCPPB3681]
gi|289646918|ref|ZP_06478261.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. aesculi
str. 2250]
gi|330869835|gb|EGH04544.1| NAD-dependent DNA ligase LigB [Pseudomonas syringae pv. aesculi
str. 0893_23]
Length = 561
Score = 36.0 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 57 GEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLD 98
+A EV L + Y+R D LYD+ ++L+
Sbjct: 31 AKARSEVTNLQQQMAAWDDSYHRQGISHIPDELYDQARQKLN 72
>gi|326629797|gb|EGE36140.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9]
Length = 562
Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERL 97
A E+ L + Y++ D +YD++S RL
Sbjct: 28 PARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARL 69
>gi|255521960|ref|ZP_05389197.1| NAD-dependent DNA ligase LigA [Listeria monocytogenes FSL J1-175]
Length = 34
Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLY 90
E L+ I + YY +DNP D Y
Sbjct: 4 KKRYEELINILDQYSYDYYVIDNPTVEDAEY 34
>gi|213620560|ref|ZP_03373343.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
Length = 99
Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERL 97
A E+ L + Y++ D +YD++S RL
Sbjct: 27 PARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARL 68
>gi|207858976|ref|YP_002245627.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|226737622|sp|B5R5H2|LIGB_SALEP RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] B
gi|206710779|emb|CAR35140.1| putative DNA ligase [Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
Length = 561
Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERL 97
A E+ L + Y++ D +YD++S RL
Sbjct: 27 PARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARL 68
>gi|205354659|ref|YP_002228460.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|226737623|sp|B5RG75|LIGB_SALG2 RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] B
gi|205274440|emb|CAR39472.1| putative DNA ligase [Salmonella enterica subsp. enterica serovar
Gallinarum str. 287/91]
Length = 561
Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERL 97
A E+ L + Y++ D +YD++S RL
Sbjct: 27 PARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARL 68
>gi|200387460|ref|ZP_03214072.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
enterica subsp. enterica serovar Virchow str. SL491]
gi|199604558|gb|EDZ03103.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
enterica subsp. enterica serovar Virchow str. SL491]
Length = 561
Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERL 97
A E+ L + Y++ D +YD++S RL
Sbjct: 27 PARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARL 68
>gi|168464952|ref|ZP_02698844.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|195632322|gb|EDX50806.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
Length = 561
Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERL 97
A E+ L + Y++ D +YD++S RL
Sbjct: 27 PARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARL 68
>gi|168260506|ref|ZP_02682479.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
gi|205350522|gb|EDZ37153.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
Length = 561
Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERL 97
A E+ L + Y++ D +YD++S RL
Sbjct: 27 PARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARL 68
>gi|194445315|ref|YP_002042988.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|226737625|sp|B4SXE9|LIGB_SALNS RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] B
gi|194403978|gb|ACF64200.1| NAD-dependent DNA ligase [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
Length = 561
Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERL 97
A E+ L + Y++ D +YD++S RL
Sbjct: 27 PARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARL 68
>gi|198244266|ref|YP_002217699.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|226737621|sp|B5FM71|LIGB_SALDC RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] B
gi|197938782|gb|ACH76115.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
enterica subsp. enterica serovar Dublin str.
CT_02021853]
gi|326625484|gb|EGE31829.1| NAD-dependent DNA ligase adenylation domain protein [Salmonella
enterica subsp. enterica serovar Dublin str. 3246]
Length = 561
Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERL 97
A E+ L + Y++ D +YD++S RL
Sbjct: 27 PARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARL 68
>gi|197263258|ref|ZP_03163332.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|197241513|gb|EDY24133.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
Length = 561
Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERL 97
A E+ L + Y++ D +YD++S RL
Sbjct: 27 PARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARL 68
>gi|162139527|ref|YP_218649.2| NAD-dependent DNA ligase LigB [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|224585537|ref|YP_002639336.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|166226375|sp|Q57I94|LIGB_SALCH RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] B
gi|254809146|sp|C0Q1X9|LIGB_SALPC RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] B
gi|224470065|gb|ACN47895.1| DNA ligase [Salmonella enterica subsp. enterica serovar Paratyphi
C strain RKS4594]
gi|322716720|gb|EFZ08291.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp.
enterica serovar Choleraesuis str. A50]
Length = 561
Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERL 97
A E+ L + Y++ D +YD++S RL
Sbjct: 27 PARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARL 68
>gi|56415629|ref|YP_152704.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|197364556|ref|YP_002144193.1| NAD-dependent DNA ligase LigB [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|81821323|sp|Q5PC41|LIGB_SALPA RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] B
gi|226737626|sp|B5BI22|LIGB_SALPK RecName: Full=DNA ligase B; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+] B
gi|56129886|gb|AAV79392.1| putative DNA ligase [Salmonella enterica subsp. enterica serovar
Paratyphi A str. ATCC 9150]
gi|197096033|emb|CAR61620.1| putative DNA ligase [Salmonella enterica subsp. enterica serovar
Paratyphi A str. AKU_12601]
Length = 561
Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERL 97
A E+ L + Y++ D +YD++S RL
Sbjct: 27 PARAAEEITRLQQQLADWNDIYWKQGVSAVDDSVYDQLSARL 68
>gi|332089533|gb|EGI94637.1| NAD-dependent DNA ligase adenylation domain protein [Shigella
boydii 3594-74]
Length = 417
Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 20/50 (40%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ + Y++ DG+YD++S RL Q F
Sbjct: 15 SPARAQEEIFRQQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF 64
>gi|320185697|gb|EFW60455.1| DNA ligase , LigB [Shigella flexneri CDC 796-83]
Length = 411
Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 20/50 (40%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ + Y++ DG+YD++S RL Q F
Sbjct: 9 SPARAQEEIFRQQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF 58
>gi|320177344|gb|EFW52346.1| DNA ligase , LigB [Shigella dysenteriae CDC 74-1112]
Length = 508
Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 20/50 (40%)
Query: 55 SKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQF 104
S A E+ + Y++ DG+YD++S RL Q F
Sbjct: 26 SPARAQEEIFRQQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCF 75
>gi|327198330|ref|YP_004306904.1| NAD-dependent DNA ligase [Streptococcus phage Dp-1]
gi|314912632|gb|ADT64023.1| NAD-dependent DNA ligase [Streptococcus phage Dp-1]
Length = 137
Score = 36.0 bits (82), Expect = 1.9, Method: Composition-based stats.
Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 4/75 (5%)
Query: 33 KFLPNK-RALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYD 91
K +P R + + K K + + + + L H YY ++ + DG YD
Sbjct: 27 KLVPASSRRKKRTVPKPKP---KIDEQVVELMNRRERQVLVHSCIYYYFNDSIIADGQYD 83
Query: 92 RVSERLDALQEQFPE 106
+ S L +L P+
Sbjct: 84 KWSHELYSLIVSHPD 98
>gi|126669208|ref|ZP_01740125.1| hypothetical protein MELB17_00020 [Marinobacter sp. ELB17]
gi|126626327|gb|EAZ97005.1| hypothetical protein MELB17_00020 [Marinobacter sp. ELB17]
Length = 490
Score = 36.0 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 10/56 (17%), Positives = 22/56 (39%), Gaps = 7/56 (12%)
Query: 42 ESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERL 97
+ L+ A ++ +S + +E Y D+ + +D YD + + L
Sbjct: 4 LATLNTADSLSGISTRQIEESLER-------ANDAYRNTDDSIISDSDYDALIDEL 52
>gi|195095248|ref|XP_001997834.1| GH10790 [Drosophila grimshawi]
gi|193905698|gb|EDW04565.1| GH10790 [Drosophila grimshawi]
Length = 621
Score = 36.0 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF 108
A+ +V L++ Q YY D D + +L L+ +FP +
Sbjct: 2 ALRQVHRLLRALYAPQHVYYIH-----VDARQDYLYRQLLELEPKFPNIR 46
>gi|307826049|ref|ZP_07656262.1| DNA ligase (NAD(+)) [Methylobacter tundripaludum SV96]
gi|307732888|gb|EFO03752.1| DNA ligase (NAD(+)) [Methylobacter tundripaludum SV96]
Length = 654
Score = 35.6 bits (81), Expect = 2.0, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Query: 41 LESWLDKAKKVTSLSKGEAMIEV--EYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLD 98
+ES + + ++K + E+ E L++ Y R P +D YD V L
Sbjct: 17 IESTHLSPELIAQIAKQASPKELTNEQLLEFLQVCNALY-RGGEPFISDADYDFVF--LA 73
Query: 99 ALQEQFPE 106
LQ++ P
Sbjct: 74 ELQKRHPH 81
>gi|158294820|ref|XP_315833.4| AGAP005810-PA [Anopheles gambiae str. PEST]
gi|157015743|gb|EAA10801.5| AGAP005810-PA [Anopheles gambiae str. PEST]
Length = 849
Score = 35.6 bits (81), Expect = 2.4, Method: Composition-based stats.
Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFP 105
++ L++ +YY +P Y + L L++ FP
Sbjct: 246 QIRRLLRAIYDRNHYYYIHIDPK---QHY--LFRELLKLEKDFP 284
>gi|238759846|ref|ZP_04621002.1| DNA ligase B [Yersinia aldovae ATCC 35236]
gi|238701907|gb|EEP94468.1| DNA ligase B [Yersinia aldovae ATCC 35236]
Length = 532
Score = 35.6 bits (81), Expect = 2.4, Method: Composition-based stats.
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 62 EVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERL 97
E++ L K Y++ + D YD++ +L
Sbjct: 4 EIKELTKQLGKWDIAYHQQGHSPIADDAYDQLVAKL 39
>gi|72388571|gb|AAZ67929.1| DNA gyrase subunit B [Psychrobacter marincola]
Length = 751
Score = 35.6 bits (81), Expect = 2.5, Method: Composition-based stats.
Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 5/79 (6%)
Query: 18 NITPAQWKKLLTLEAKFLPNKRALESWLDKAKKVTSL-SKGEAMIEVEYLVKIALHHQKW 76
NI Q + + A L AL + +A +L +K + + + V HH
Sbjct: 630 NIHEPQPENMDAAAADLLGMTPALTADESEAADSDALSTKAQWLPRITVYVHQLAHH--- 686
Query: 77 YYRLDNPLFTDGLYDRVSE 95
Y LD G Y ++
Sbjct: 687 -YLLDASFINSGEYSKLLR 704
>gi|297699796|ref|XP_002826958.1| PREDICTED: NACHT, LRR and PYD domains-containing protein 1-like
[Pongo abelii]
Length = 1524
Score = 35.2 bits (80), Expect = 2.7, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 71 LHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELF 108
HH + + RLD +D + + L AL+++ P+L
Sbjct: 1026 EHHDRGWGRLDQTTLSD----EMRQELRALEQEKPQLL 1059
>gi|218777900|ref|YP_002429218.1| DNA ligase (NAD(+)) [Desulfatibacillum alkenivorans AK-01]
gi|254781309|sp|B8FKD5|DNLJ_DESAA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD+]
gi|218759284|gb|ACL01750.1| DNA ligase (NAD(+)) [Desulfatibacillum alkenivorans AK-01]
Length = 631
Score = 35.2 bits (80), Expect = 2.7, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 64 EYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDAL 100
E L + + + Y R P+ +D YD + ERL +
Sbjct: 15 ELLGQWLEKYNEAY-RAGKPMISDAHYDLLVERLREI 50
>gi|270158198|ref|ZP_06186855.1| conserved hypothetical protein [Legionella longbeachae D-4968]
gi|289163544|ref|YP_003453682.1| hypothetical protein LLO_0200 [Legionella longbeachae NSW150]
gi|269990223|gb|EEZ96477.1| conserved hypothetical protein [Legionella longbeachae D-4968]
gi|288856717|emb|CBJ10528.1| hypothetical protein LLO_0200 [Legionella longbeachae NSW150]
Length = 718
Score = 35.2 bits (80), Expect = 2.8, Method: Composition-based stats.
Identities = 23/117 (19%), Positives = 44/117 (37%), Gaps = 26/117 (22%)
Query: 8 FRSSKFENEHNITPAQWKKLLTLEAKFLPNKRA----LESWLDKAKKVTSLSKGEAMIEV 63
F + K N+ +K L L +FL RA +E D + K+T ++ +
Sbjct: 11 FLNDKLNKNKNVADVHFKDFLKLRKEFLEYSRAECGLIEVDFDPSNKLTEVTPSLYTKNM 70
Query: 64 EYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQ------FPELFDEDHPW 114
+ +H K YY D ++++ AL++ + +L + P
Sbjct: 71 -----VIAYHDKLYYA-----------DTKNQKVIALEKNKSNKDDYEQLRRKCTPT 111
>gi|328705376|ref|XP_003242779.1| PREDICTED: protein peanut-like isoform 5 [Acyrthosiphon pisum]
Length = 623
Score = 35.2 bits (80), Expect = 2.8, Method: Composition-based stats.
Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 13/91 (14%)
Query: 15 NEHNITPAQWKKLLTLEAKFLPNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQ 74
N H +TP L+ +F+ + + K +++ E + ++K H+
Sbjct: 337 NSHGMTP--------LDVEFMQRLHDKVNIIPIISKADTMTPDEVTEYKKQILKEIAQHK 388
Query: 75 KWYYRLDNPLFTDGLYDRVSERLDALQEQFP 105
Y F D D E L L+ + P
Sbjct: 389 IKIY-----DFPDSDKDEDRENLKKLKARVP 414
>gi|72388579|gb|AAZ67933.1| DNA gyrase subunit B [Psychrobacter submarinus]
Length = 749
Score = 35.2 bits (80), Expect = 2.9, Method: Composition-based stats.
Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 5/79 (6%)
Query: 18 NITPAQWKKLLTLEAKFLPNKRALESWLDKAKKVTSL-SKGEAMIEVEYLVKIALHHQKW 76
NI Q + + A L AL + +A +L +K + + + V HH
Sbjct: 631 NIHEPQPENMDAAAADLLGMTPALTADESEAADSDALSTKAQWLPRITVYVHQLAHH--- 687
Query: 77 YYRLDNPLFTDGLYDRVSE 95
Y LD G Y ++
Sbjct: 688 -YLLDASFINSGEYSKLLR 705
>gi|197301582|ref|ZP_03166655.1| hypothetical protein RUMLAC_00308 [Ruminococcus lactaris ATCC
29176]
gi|197299312|gb|EDY33839.1| hypothetical protein RUMLAC_00308 [Ruminococcus lactaris ATCC
29176]
Length = 662
Score = 35.2 bits (80), Expect = 3.0, Method: Composition-based stats.
Identities = 13/60 (21%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTVGY 119
+ LV++ +K Y + + + ++ YDR+ + L+ L+++ + P VGY
Sbjct: 15 QQRMRELVELLNRARKAYEQDNTEIMSNYEYDRLYDELEELEKEL-GTKMANSPTVNVGY 73
>gi|328705370|ref|XP_003242776.1| PREDICTED: protein peanut-like isoform 2 [Acyrthosiphon pisum]
gi|328705374|ref|XP_003242778.1| PREDICTED: protein peanut-like isoform 4 [Acyrthosiphon pisum]
Length = 471
Score = 35.2 bits (80), Expect = 3.3, Method: Composition-based stats.
Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 13/91 (14%)
Query: 15 NEHNITPAQWKKLLTLEAKFLPNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQ 74
N H +TP L+ +F+ + + K +++ E + ++K H+
Sbjct: 185 NSHGMTP--------LDVEFMQRLHDKVNIIPIISKADTMTPDEVTEYKKQILKEIAQHK 236
Query: 75 KWYYRLDNPLFTDGLYDRVSERLDALQEQFP 105
Y F D D E L L+ + P
Sbjct: 237 IKIY-----DFPDSDKDEDRENLKKLKARVP 262
>gi|183597041|ref|ZP_02958534.1| hypothetical protein PROSTU_00276 [Providencia stuartii ATCC
25827]
gi|188023700|gb|EDU61740.1| hypothetical protein PROSTU_00276 [Providencia stuartii ATCC
25827]
Length = 570
Score = 34.8 bits (79), Expect = 3.5, Method: Composition-based stats.
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 52 TSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVS 94
++LS+ E E + L + + Y N TD YD++
Sbjct: 42 STLSQDELKKESQKLGEQLQQWNRLYRLSGNSPVTDETYDQLL 84
>gi|254569394|ref|XP_002491807.1| Topoisomerase II-associated deadenylation-dependent mRNA-decapping
factor [Pichia pastoris GS115]
gi|238031604|emb|CAY69527.1| Topoisomerase II-associated deadenylation-dependent mRNA-decapping
factor [Pichia pastoris GS115]
gi|328351693|emb|CCA38092.1| DNA topoisomerase 2-associated protein PAT1 [Pichia pastoris CBS
7435]
Length = 833
Score = 34.8 bits (79), Expect = 3.5, Method: Composition-based stats.
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 49 KKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQE 102
+ V + SK E + L H+ +Y LD+P + +R++ R L+
Sbjct: 305 EPVENYSKYE-NRQNHQLRSH-HRHEDRFYNLDDPNLSPKERERLARRNHKLER 356
>gi|328705372|ref|XP_003242777.1| PREDICTED: protein peanut-like isoform 3 [Acyrthosiphon pisum]
Length = 608
Score = 34.8 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 13/91 (14%)
Query: 15 NEHNITPAQWKKLLTLEAKFLPNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQ 74
N H +TP L+ +F+ + + K +++ E + ++K H+
Sbjct: 337 NSHGMTP--------LDVEFMQRLHDKVNIIPIISKADTMTPDEVTEYKKQILKEIAQHK 388
Query: 75 KWYYRLDNPLFTDGLYDRVSERLDALQEQFP 105
Y F D D E L L+ + P
Sbjct: 389 IKIY-----DFPDSDKDEDRENLKKLKARVP 414
>gi|212711586|ref|ZP_03319714.1| hypothetical protein PROVALCAL_02661 [Providencia alcalifaciens DSM
30120]
gi|212685688|gb|EEB45216.1| hypothetical protein PROVALCAL_02661 [Providencia alcalifaciens DSM
30120]
Length = 564
Score = 34.8 bits (79), Expect = 3.8, Method: Composition-based stats.
Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 6/74 (8%)
Query: 45 LDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVS------ERLD 98
+D K +L E L + + Y +D +YD++ +R
Sbjct: 32 VDSQKICHTLDDKLMGAEQLRLGEQLQEWDRQYQIEGVSEVSDEVYDQILAQWRRGQRCL 91
Query: 99 ALQEQFPELFDEDH 112
L ++ P+ +
Sbjct: 92 NLPDRLPQPVQPNT 105
>gi|4235374|gb|AAD13190.1| NAD-dependent DNA ligase [Thermus thermophilus]
Length = 557
Score = 34.8 bits (79), Expect = 4.0, Method: Composition-based stats.
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 103 QFPELFDEDHPWNTVG 118
+FPEL D P VG
Sbjct: 1 RFPELKSPDSPTEQVG 16
>gi|78186857|ref|YP_374900.1| ATPase involved in DNA repair-like [Chlorobium luteolum DSM 273]
gi|78166759|gb|ABB23857.1| ATPase involved in DNA repair-like protein [Chlorobium luteolum DSM
273]
Length = 910
Score = 34.8 bits (79), Expect = 4.0, Method: Composition-based stats.
Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 8/66 (12%)
Query: 12 KFENEHNITPAQWKKLLTLEAKFLPNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIAL 71
K E E + A WK LL +FL KR + ++ + + ++ E L +
Sbjct: 277 KKEAEAKLAEASWKALLEERERFLELKRDISAYEESLAPLDAM--------HEELKQSVA 328
Query: 72 HHQKWY 77
+ Y
Sbjct: 329 EAARAY 334
>gi|328705368|ref|XP_001952867.2| PREDICTED: protein peanut-like isoform 1 [Acyrthosiphon pisum]
Length = 456
Score = 34.4 bits (78), Expect = 4.6, Method: Composition-based stats.
Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 13/91 (14%)
Query: 15 NEHNITPAQWKKLLTLEAKFLPNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQ 74
N H +TP L+ +F+ + + K +++ E + ++K H+
Sbjct: 185 NSHGMTP--------LDVEFMQRLHDKVNIIPIISKADTMTPDEVTEYKKQILKEIAQHK 236
Query: 75 KWYYRLDNPLFTDGLYDRVSERLDALQEQFP 105
Y F D D E L L+ + P
Sbjct: 237 IKIY-----DFPDSDKDEDRENLKKLKARVP 262
>gi|224994125|dbj|BAH28875.1| DNA gyrase subunit B [Psychrobacter aquimaris]
Length = 737
Score = 34.4 bits (78), Expect = 4.7, Method: Composition-based stats.
Identities = 24/100 (24%), Positives = 35/100 (35%), Gaps = 9/100 (9%)
Query: 18 NITPAQWKKLLTLEAKFLPNKRALESWLDKAKKVTSLS-KGEAMIEVEYLVKIALHHQKW 76
NI Q K + A L K A+E+ +A LS K + + + V HH
Sbjct: 627 NIHAPQPKNMDAAAADLLGMKPAVETIDGEASDSEVLSAKAQWLPRITVYVHQLAHH--- 683
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
Y LD Y ++ L ++ L ED
Sbjct: 684 -YLLDASFINSSEYSKLLR----LSAEWNTLLAEDAFIRR 718
>gi|326775900|ref|ZP_08235165.1| TAP domain protein [Streptomyces cf. griseus XylebKG-1]
gi|326656233|gb|EGE41079.1| TAP domain protein [Streptomyces cf. griseus XylebKG-1]
Length = 520
Score = 34.4 bits (78), Expect = 5.0, Method: Composition-based stats.
Identities = 10/38 (26%), Positives = 12/38 (31%)
Query: 60 MIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERL 97
E + H Y+ D P YDRV L
Sbjct: 272 EARWEDFRRWVAKHDDVYHLGDTPASVQQHYDRVRAEL 309
>gi|291549033|emb|CBL25295.1| DNA ligase, NAD-dependent [Ruminococcus torques L2-14]
Length = 652
Score = 34.4 bits (78), Expect = 5.1, Method: Composition-based stats.
Identities = 13/66 (19%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ + + M + LV++ ++ Y + + + ++ YD++ + L L+E+ + P
Sbjct: 1 MDEQKEMNHMRELVELLNRARRSYEQENTEIMSNYEYDKLYDELLELEEKL-GTRMANSP 59
Query: 114 WNTVGY 119
VGY
Sbjct: 60 TVNVGY 65
>gi|72388587|gb|AAZ67937.1| DNA gyrase subunit B [Psychrobacter immobilis]
Length = 747
Score = 34.4 bits (78), Expect = 5.2, Method: Composition-based stats.
Identities = 24/100 (24%), Positives = 35/100 (35%), Gaps = 9/100 (9%)
Query: 18 NITPAQWKKLLTLEAKFLPNKRALESWLDKAKKVTSLS-KGEAMIEVEYLVKIALHHQKW 76
NI Q K + A L K +E+ A +LS K + + + V HH
Sbjct: 624 NIHAPQPKNMDAAAADLLGMKPVVETVEGAASDSEALSAKAQWLPRITVYVHQLAHH--- 680
Query: 77 YYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNT 116
Y LD G Y ++ L ++ L ED
Sbjct: 681 -YLLDASFINSGEYSKLLR----LSAEWNTLLAEDAFIRR 715
>gi|294055677|ref|YP_003549335.1| hypothetical protein Caka_2147 [Coraliomargarita akajimensis DSM
45221]
gi|293615010|gb|ADE55165.1| hypothetical protein Caka_2147 [Coraliomargarita akajimensis DSM
45221]
Length = 162
Score = 34.4 bits (78), Expect = 5.2, Method: Composition-based stats.
Identities = 7/28 (25%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 84 LFTDGLYDRVSERLDALQEQFPELFDED 111
+ YD + +R++AL++Q+ D
Sbjct: 24 TVSRAEYDALLKRVEALEQQY-AAVSPD 50
>gi|332289582|ref|YP_004420434.1| D-ribose transporter ATP binding protein [Gallibacterium anatis
UMN179]
gi|330432478|gb|AEC17537.1| D-ribose transporter ATP binding protein [Gallibacterium anatis
UMN179]
Length = 495
Score = 34.4 bits (78), Expect = 5.4, Method: Composition-based stats.
Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 10/101 (9%)
Query: 5 DRVFRSSKFENEHNITPAQWKKLLTLEAKFLPNKRALESWLDKAKKVTSLSKGEAMIEVE 64
+ +F +F N+ WKK+ T K L + L+ V LS GE +++
Sbjct: 98 ENIFLGREFTNKFG--GIDWKKMTTESEKLL---KRLKIKHCPTTPVEQLSLGE--LQMI 150
Query: 65 YLVKIALHHQKWYYRLDNPL--FTDGLYDRVSERLDALQEQ 103
+ K +D P TD D + + L++Q
Sbjct: 151 EIAKALSF-DAKVIIMDEPTDALTDTETDALFNVIRELKQQ 190
>gi|218260666|ref|ZP_03475862.1| hypothetical protein PRABACTJOHN_01526 [Parabacteroides johnsonii
DSM 18315]
gi|218224416|gb|EEC97066.1| hypothetical protein PRABACTJOHN_01526 [Parabacteroides johnsonii
DSM 18315]
Length = 57
Score = 34.4 bits (78), Expect = 5.4, Method: Composition-based stats.
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 59 AMIEVEYLVKIALHHQKWYYRLDNPLF 85
+++ L + H YY L P
Sbjct: 31 VKDKIKALREALEQHNYNYYVLSAPTI 57
>gi|325843178|ref|ZP_08167864.1| efflux transporter, RND family, MFP subunit [Turicibacter sp. HGF1]
gi|325489422|gb|EGC91792.1| efflux transporter, RND family, MFP subunit [Turicibacter sp. HGF1]
Length = 478
Score = 34.4 bits (78), Expect = 5.5, Method: Composition-based stats.
Identities = 18/106 (16%), Positives = 46/106 (43%), Gaps = 19/106 (17%)
Query: 3 NFDRVFRSSK--FENEHNITPAQWKKLLTLEAKFLPNKRALESWLDKAKKVTSLSKGEAM 60
++++V +SS+ + +E ++ ++ KKL A K + +++ +++ +A
Sbjct: 136 SWNQVTQSSQEQYNSEKSVVESELKKLDEQLANIQTKKHEITQKINEL----EVTQVQAN 191
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLF---TDGLYDRVSERLDALQEQ 103
E L + NP +D ++ ++L L++Q
Sbjct: 192 NEAPDLEEEGT----------NPEILLNSDEELQQLRQQLSDLEQQ 227
>gi|192360717|ref|YP_001983417.1| acyltransferase family protein [Cellvibrio japonicus Ueda107]
gi|190686882|gb|ACE84560.1| acyltransferase family protein [Cellvibrio japonicus Ueda107]
Length = 573
Score = 34.4 bits (78), Expect = 5.7, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 64 EYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQ--EQFPELFDE 110
E L + + + + YYR D+P DG + + + ++ +QF L E
Sbjct: 453 ETLRDMLVFYYERYYRQDDP-LADGKHPHLMDENRQIELQQQFAHLNRE 500
>gi|150388664|ref|YP_001318713.1| peptidase [Alkaliphilus metalliredigens QYMF]
gi|149948526|gb|ABR47054.1| Propeptide, PepSY amd peptidase M4 [Alkaliphilus metalliredigens
QYMF]
Length = 447
Score = 34.4 bits (78), Expect = 5.8, Method: Composition-based stats.
Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 12/92 (13%)
Query: 29 TLEAKFLPNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDG 88
+LE L LE + + T +++G A +E L HH Y L +D
Sbjct: 77 SLEELGLGYTHWLELNQTERRPNTRMARGFAGVE--ALRNTLAHHLYNQYVLQENTLSDY 134
Query: 89 LY----------DRVSERLDALQEQFPELFDE 110
+ DR+ ++ + EL D
Sbjct: 135 DFEVLDRSHDLLDRLLLAYHNIENRLDELQDP 166
>gi|293375021|ref|ZP_06621314.1| efflux transporter, RND family, MFP subunit [Turicibacter sanguinis
PC909]
gi|292646359|gb|EFF64376.1| efflux transporter, RND family, MFP subunit [Turicibacter sanguinis
PC909]
Length = 478
Score = 34.4 bits (78), Expect = 5.9, Method: Composition-based stats.
Identities = 18/106 (16%), Positives = 46/106 (43%), Gaps = 19/106 (17%)
Query: 3 NFDRVFRSSK--FENEHNITPAQWKKLLTLEAKFLPNKRALESWLDKAKKVTSLSKGEAM 60
++++V +SS+ + +E ++ ++ KKL A K + +++ +++ +A
Sbjct: 136 SWNQVTQSSQEQYNSEKSVVESELKKLDEQLANIQTKKHEITQKINEL----EVTQVQAN 191
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLF---TDGLYDRVSERLDALQEQ 103
E L + NP +D ++ ++L L++Q
Sbjct: 192 NEAPDLEEEGT----------NPEILLNSDEELQQLRQQLSDLEQQ 227
>gi|153813883|ref|ZP_01966551.1| hypothetical protein RUMTOR_00089 [Ruminococcus torques ATCC 27756]
gi|331088166|ref|ZP_08337086.1| DNA ligase [Lachnospiraceae bacterium 3_1_46FAA]
gi|145848279|gb|EDK25197.1| hypothetical protein RUMTOR_00089 [Ruminococcus torques ATCC 27756]
gi|330408822|gb|EGG88285.1| DNA ligase [Lachnospiraceae bacterium 3_1_46FAA]
Length = 653
Score = 34.1 bits (77), Expect = 5.9, Method: Composition-based stats.
Identities = 14/66 (21%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
+ K + + LV++ ++ Y + + + ++ YDR+ + L +L+++ E P
Sbjct: 1 MEKKKKTKRMRELVELLNKARRAYEQENTEIMSNFEYDRLYDELLSLEKEL-ETTLASSP 59
Query: 114 WNTVGY 119
VGY
Sbjct: 60 TVNVGY 65
>gi|255083490|ref|XP_002504731.1| predicted protein [Micromonas sp. RCC299]
gi|226519999|gb|ACO65989.1| predicted protein [Micromonas sp. RCC299]
Length = 778
Score = 34.1 bits (77), Expect = 6.1, Method: Composition-based stats.
Identities = 21/98 (21%), Positives = 39/98 (39%), Gaps = 15/98 (15%)
Query: 11 SKFENEHNITPAQWKKLLTLEAKFLPNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIA 70
S+ H +LLT E++ KR + + L +A+ ++ +A L ++
Sbjct: 28 SELATAHETIRTLEARLLTTESRLAQEKRGVAAELQRARDAST---EQAARHEHRLAELQ 84
Query: 71 LHHQKWYYRLDNPLFTDGLYDR---VSERLDALQEQFP 105
HH + + L+DR + + ALQ P
Sbjct: 85 QHHDARF---------EALHDRHRALQLEMAALQASIP 113
>gi|83643130|ref|YP_431565.1| carboxypeptidase [Hahella chejuensis KCTC 2396]
gi|83631173|gb|ABC27140.1| predicted carboxypeptidase [Hahella chejuensis KCTC 2396]
Length = 993
Score = 34.1 bits (77), Expect = 6.2, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 26/76 (34%), Gaps = 11/76 (14%)
Query: 37 NKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIA-LHHQKWYYRLDNPL--FTDGLYDRV 93
A+ S +DK K + K E M + Y+ D P D
Sbjct: 65 TVEAVLSPIDKEKLDKAGIKWEPMQMTSQFRSAFSASGETAYHSFDEPELGIED------ 118
Query: 94 SERLDALQEQFPELFD 109
RL AL E++P L
Sbjct: 119 --RLYALAEKYPALVT 132
>gi|227113300|ref|ZP_03826956.1| NAD-dependent DNA ligase LigB [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 563
Score = 34.1 bits (77), Expect = 7.0, Method: Composition-based stats.
Identities = 8/38 (21%), Positives = 16/38 (42%)
Query: 61 IEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLD 98
E++ L YY D +YD++ ++L+
Sbjct: 37 KEIDALRHQLELWDDVYYTEGKSPIEDDVYDQLRDQLN 74
>gi|119589654|gb|EAW69248.1| hCG1811453, isoform CRA_c [Homo sapiens]
Length = 748
Score = 33.7 bits (76), Expect = 8.2, Method: Composition-based stats.
Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 15/92 (16%)
Query: 19 ITPAQWKKLLTLEAKFLPNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYY 78
++P+ + L +L+ + R + ++K + + + K E +EVE L +
Sbjct: 378 LSPSAQEHLASLQEQVAVLTRQNQELMEKVQILENFEKDETQMEVEALAE---------- 427
Query: 79 RLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
+ LYD + D L+ Q E
Sbjct: 428 -----VIPLALYDSLRAEFDQLRRQHAEALQA 454
>gi|188587413|ref|YP_001918958.1| peptidase S41 [Natranaerobius thermophilus JW/NM-WN-LF]
gi|179352100|gb|ACB86370.1| peptidase S41 [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 314
Score = 33.7 bits (76), Expect = 8.7, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 12/70 (17%)
Query: 36 PNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLDNP-LFTDGLYDRVS 94
P LE +D + L+K E + E LV+ A+ + YY + P D
Sbjct: 35 PGPEKLEENIDANPLIPDLTKEEELRE--KLVEEAVEILETYYVEEPPHDIQDAE----- 87
Query: 95 ERLDALQEQF 104
+L+E F
Sbjct: 88 ----SLEELF 93
>gi|300775004|ref|ZP_07084867.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910]
gi|300506819|gb|EFK37954.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910]
Length = 325
Score = 33.7 bits (76), Expect = 9.3, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 24 WKKLLTLEAKFLPNKRALESWLDK--AKKVTSLSKGEAMIEVEYLVKIALHHQKWYYRLD 81
+K++ EA+ L + S+L+K KV +S+ + +++L K H YY+LD
Sbjct: 257 FKRISDHEAEVLKDGFYFGSYLNKGFKIKVEEISEEQLNDVIDFLQKKIPHFNIIYYQLD 316
Query: 82 NPLFTD 87
+ +D
Sbjct: 317 SKFVSD 322
>gi|119589656|gb|EAW69250.1| hCG1811453, isoform CRA_d [Homo sapiens]
Length = 844
Score = 33.7 bits (76), Expect = 9.8, Method: Composition-based stats.
Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 15/92 (16%)
Query: 19 ITPAQWKKLLTLEAKFLPNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYY 78
++P+ + L +L+ + R + ++K + + + K E +EVE L +
Sbjct: 405 LSPSAQEHLASLQEQVAVLTRQNQELMEKVQILENFEKDETQMEVEALAE---------- 454
Query: 79 RLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
+ LYD + D L+ Q E
Sbjct: 455 -----VIPLALYDSLRAEFDQLRRQHAEALQA 481
>gi|18916882|dbj|BAB85567.1| KIAA1981 protein [Homo sapiens]
Length = 863
Score = 33.7 bits (76), Expect = 9.8, Method: Composition-based stats.
Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 15/92 (16%)
Query: 19 ITPAQWKKLLTLEAKFLPNKRALESWLDKAKKVTSLSKGEAMIEVEYLVKIALHHQKWYY 78
++P+ + L +L+ + R + ++K + + + K E +EVE L +
Sbjct: 424 LSPSAQEHLASLQEQVAVLTRQNQELMEKVQILENFEKDETQMEVEALAE---------- 473
Query: 79 RLDNPLFTDGLYDRVSERLDALQEQFPELFDE 110
+ LYD + D L+ Q E
Sbjct: 474 -----VIPLALYDSLRAEFDQLRRQHAEALQA 500
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.310 0.155 0.503
Lambda K H
0.267 0.0477 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,697,539,772
Number of Sequences: 14124377
Number of extensions: 117889648
Number of successful extensions: 363862
Number of sequences better than 10.0: 2864
Number of HSP's better than 10.0 without gapping: 4465
Number of HSP's successfully gapped in prelim test: 238
Number of HSP's that attempted gapping in prelim test: 358999
Number of HSP's gapped (non-prelim): 4894
length of query: 119
length of database: 4,842,793,630
effective HSP length: 86
effective length of query: 33
effective length of database: 3,628,097,208
effective search space: 119727207864
effective search space used: 119727207864
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.0 bits)
S2: 76 (33.7 bits)