RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781196|ref|YP_003065609.1| DNA ligase, NAD-dependent
[Candidatus Liberibacter asiaticus str. psy62]
         (119 letters)



>d1ta8a_ d.142.2.2 (A:) Adenylation domain of NAD+-dependent DNA
           ligase {Enterococcus faecalis [TaxId: 1351]}
          Length = 313

 Score = 52.3 bits (124), Expect = 1e-08
 Identities = 19/64 (29%), Positives = 29/64 (45%)

Query: 54  LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
           L+   A    + L K    +   YY  D P   D +YDR+ + L  ++ +FP+L   D P
Sbjct: 2   LTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLITPDSP 61

Query: 114 WNTV 117
              V
Sbjct: 62  TQRV 65


>d1dgsa3 d.142.2.2 (A:1-314) Adenylation domain of NAD+-dependent
           DNA ligase {Thermus filiformis [TaxId: 276]}
          Length = 314

 Score = 51.5 bits (122), Expect = 2e-08
 Identities = 20/60 (33%), Positives = 31/60 (51%)

Query: 54  LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113
           +++ EA   +  L  +  +H   YY L +P  +D  YDR+   L  L+E+FPE    D P
Sbjct: 1   MTREEARRRINELRDLIRYHNYRYYVLADPEISDAEYDRLLRELKELEERFPEFKSPDSP 60


>d1b04a_ d.142.2.2 (A:) Adenylation domain of NAD+-dependent DNA
           ligase {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 312

 Score = 50.3 bits (119), Expect = 4e-08
 Identities = 21/64 (32%), Positives = 32/64 (50%)

Query: 56  KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115
           + +A      L ++   +   YY LD P   D  YDR+ + L A++EQ+PEL   D P  
Sbjct: 2   RQQAERRAAELRELLNRYGYEYYVLDRPSVPDAEYDRLMQELIAIEEQYPELKTSDSPTQ 61

Query: 116 TVGY 119
            +G 
Sbjct: 62  RIGG 65


>d1r6na_ b.91.1.1 (A:) E2 regulatory, transactivation domain {Human
           papillomavirus type 11 [TaxId: 10580]}
          Length = 196

 Score = 26.9 bits (60), Expect = 0.44
 Identities = 9/21 (42%), Positives = 17/21 (80%)

Query: 91  DRVSERLDALQEQFPELFDED 111
           + +++RLDA Q+Q  EL++E+
Sbjct: 2   EAIAKRLDACQDQLLELYEEN 22


>d1tueb_ b.91.1.1 (B:) E2 regulatory, transactivation domain {Human
           papillomavirus type 18 [TaxId: 333761]}
          Length = 194

 Score = 26.9 bits (60), Expect = 0.45
 Identities = 8/21 (38%), Positives = 15/21 (71%)

Query: 91  DRVSERLDALQEQFPELFDED 111
           + +SERL ALQ++  + ++ D
Sbjct: 7   ETLSERLSALQDKIIDHYEND 27


>d2nnua1 b.91.1.1 (A:1-200) E2 regulatory, transactivation domain
           {Human papillomavirus type 16 [TaxId: 333760]}
          Length = 200

 Score = 26.9 bits (60), Expect = 0.52
 Identities = 4/21 (19%), Positives = 12/21 (57%)

Query: 91  DRVSERLDALQEQFPELFDED 111
           + + +RL+  Q++    ++ D
Sbjct: 2   ETLCQRLNVCQDKILTHYEND 22


>d1evsa_ a.26.1.1 (A:) Oncostatin M {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 184

 Score = 25.4 bits (55), Expect = 1.3
 Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 3/34 (8%)

Query: 79  RLDNPLFTDGLY---DRVSERLDALQEQFPELFD 109
            L    F   L      V  RL  L+++ P+  D
Sbjct: 61  GLGRRGFLQTLNATLGCVLHRLADLEQRLPKAQD 94


>d2fbka1 a.4.5.28 (A:8-179) Transcriptional regulator DR1159
           {Deinococcus radiodurans [TaxId: 1299]}
          Length = 172

 Score = 24.7 bits (53), Expect = 2.5
 Identities = 15/111 (13%), Positives = 31/111 (27%), Gaps = 10/111 (9%)

Query: 4   FDRVFRSSKFENEHNITPAQWKKLLTLEAKFLPNKRALESWLDKAKKVTSLSKGEAMIEV 63
            +R +          +  A W  LLTL  +  P +    + L     ++  S    ++ +
Sbjct: 51  IERTYA------ASGLNAAGWDLLLTL-YRSAPPEGLRPTELSALAAISGPSTSNRIVRL 103

Query: 64  EYLVKIALHHQKWYYRLDNPLFTDG---LYDRVSERLDALQEQFPELFDED 111
                I     +   R  +   T     L   +     A  ++        
Sbjct: 104 LEKGLIERREDERDRRSASIRLTPQGRALVTHLLPAHLATTQRVLAPLSAQ 154


>d2hk6a1 c.92.1.1 (A:2-310) Ferrochelatase {Bacillus subtilis
           [TaxId: 1423]}
          Length = 309

 Score = 24.7 bits (53), Expect = 2.6
 Identities = 10/42 (23%), Positives = 14/42 (33%), Gaps = 5/42 (11%)

Query: 61  IEVEYLVKIALHHQKWYYRL----DNPLFTDGLYDRVSERLD 98
            + E    +       YYR       P F D L   V ++L 
Sbjct: 268 NDYEC-KVVTDDIGASYYRPEMPNAKPEFIDALATVVLKKLG 308


>d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator
           PA4135 {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 136

 Score = 23.8 bits (51), Expect = 4.4
 Identities = 14/99 (14%), Positives = 34/99 (34%), Gaps = 5/99 (5%)

Query: 15  NEHNITPAQWKKLLTLEAKFLPNKRALESWLDKAKKVTS--LSKGEAMIEVEYLVKIALH 72
           N+H +T  QW+ +  L  +       L +     +   +  L++ E    V         
Sbjct: 24  NQHGLTEQQWRVIRILRQQGEMESYQLANQACILRPSMTGVLARLERDGIVRRWKAPKDQ 83

Query: 73  HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
            + +    +        +  +S  ++   ++  E F E+
Sbjct: 84  RRVYVNLTEKGQ---QCFVSMSGDMEKNYQRIQERFGEE 119


>d1dvoa_ a.136.1.1 (A:) Repressor of bacterial conjugation FinO
           {Escherichia coli [TaxId: 562]}
          Length = 152

 Score = 23.7 bits (51), Expect = 4.5
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 91  DRVSERLDALQEQFPELFDEDHP 113
             + E ++ L+  +P LFD D P
Sbjct: 39  PTLDEAVNTLKPWWPGLFDGDTP 61


>d2bdua1 c.108.1.21 (A:7-297) Cytosolic 5'-nucleotidase III {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 291

 Score = 23.0 bits (49), Expect = 6.7
 Identities = 8/38 (21%), Positives = 17/38 (44%)

Query: 80  LDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117
           +++ L    L DRV E L+   + +  +  ++     V
Sbjct: 246 VEHILKIGYLNDRVDELLEKYMDSYDIVLVKEESLEVV 283


>d1lr5a_ b.82.1.2 (A:) Auxin binding protein {Maize (Zea mays)
           [TaxId: 4577]}
          Length = 160

 Score = 22.5 bits (47), Expect = 9.6
 Identities = 11/32 (34%), Positives = 15/32 (46%)

Query: 80  LDNPLFTDGLYDRVSERLDALQEQFPELFDED 111
           +  P     LYD  S    A   +FP ++DED
Sbjct: 123 ISRPPAKIFLYDDWSMPHTAAVLKFPFVWDED 154


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.135    0.419 

Gapped
Lambda     K      H
   0.267   0.0568    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 484,873
Number of extensions: 20858
Number of successful extensions: 82
Number of sequences better than 10.0: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 31
Length of query: 119
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 45
Effective length of database: 1,391,576
Effective search space: 62620920
Effective search space used: 62620920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.2 bits)