RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254781196|ref|YP_003065609.1| DNA ligase, NAD-dependent [Candidatus Liberibacter asiaticus str. psy62] (119 letters) >d1ta8a_ d.142.2.2 (A:) Adenylation domain of NAD+-dependent DNA ligase {Enterococcus faecalis [TaxId: 1351]} Length = 313 Score = 52.3 bits (124), Expect = 1e-08 Identities = 19/64 (29%), Positives = 29/64 (45%) Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113 L+ A + L K + YY D P D +YDR+ + L ++ +FP+L D P Sbjct: 2 LTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLITPDSP 61 Query: 114 WNTV 117 V Sbjct: 62 TQRV 65 >d1dgsa3 d.142.2.2 (A:1-314) Adenylation domain of NAD+-dependent DNA ligase {Thermus filiformis [TaxId: 276]} Length = 314 Score = 51.5 bits (122), Expect = 2e-08 Identities = 20/60 (33%), Positives = 31/60 (51%) Query: 54 LSKGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHP 113 +++ EA + L + +H YY L +P +D YDR+ L L+E+FPE D P Sbjct: 1 MTREEARRRINELRDLIRYHNYRYYVLADPEISDAEYDRLLRELKELEERFPEFKSPDSP 60 >d1b04a_ d.142.2.2 (A:) Adenylation domain of NAD+-dependent DNA ligase {Bacillus stearothermophilus [TaxId: 1422]} Length = 312 Score = 50.3 bits (119), Expect = 4e-08 Identities = 21/64 (32%), Positives = 32/64 (50%) Query: 56 KGEAMIEVEYLVKIALHHQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWN 115 + +A L ++ + YY LD P D YDR+ + L A++EQ+PEL D P Sbjct: 2 RQQAERRAAELRELLNRYGYEYYVLDRPSVPDAEYDRLMQELIAIEEQYPELKTSDSPTQ 61 Query: 116 TVGY 119 +G Sbjct: 62 RIGG 65 >d1r6na_ b.91.1.1 (A:) E2 regulatory, transactivation domain {Human papillomavirus type 11 [TaxId: 10580]} Length = 196 Score = 26.9 bits (60), Expect = 0.44 Identities = 9/21 (42%), Positives = 17/21 (80%) Query: 91 DRVSERLDALQEQFPELFDED 111 + +++RLDA Q+Q EL++E+ Sbjct: 2 EAIAKRLDACQDQLLELYEEN 22 >d1tueb_ b.91.1.1 (B:) E2 regulatory, transactivation domain {Human papillomavirus type 18 [TaxId: 333761]} Length = 194 Score = 26.9 bits (60), Expect = 0.45 Identities = 8/21 (38%), Positives = 15/21 (71%) Query: 91 DRVSERLDALQEQFPELFDED 111 + +SERL ALQ++ + ++ D Sbjct: 7 ETLSERLSALQDKIIDHYEND 27 >d2nnua1 b.91.1.1 (A:1-200) E2 regulatory, transactivation domain {Human papillomavirus type 16 [TaxId: 333760]} Length = 200 Score = 26.9 bits (60), Expect = 0.52 Identities = 4/21 (19%), Positives = 12/21 (57%) Query: 91 DRVSERLDALQEQFPELFDED 111 + + +RL+ Q++ ++ D Sbjct: 2 ETLCQRLNVCQDKILTHYEND 22 >d1evsa_ a.26.1.1 (A:) Oncostatin M {Human (Homo sapiens) [TaxId: 9606]} Length = 184 Score = 25.4 bits (55), Expect = 1.3 Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 3/34 (8%) Query: 79 RLDNPLFTDGLY---DRVSERLDALQEQFPELFD 109 L F L V RL L+++ P+ D Sbjct: 61 GLGRRGFLQTLNATLGCVLHRLADLEQRLPKAQD 94 >d2fbka1 a.4.5.28 (A:8-179) Transcriptional regulator DR1159 {Deinococcus radiodurans [TaxId: 1299]} Length = 172 Score = 24.7 bits (53), Expect = 2.5 Identities = 15/111 (13%), Positives = 31/111 (27%), Gaps = 10/111 (9%) Query: 4 FDRVFRSSKFENEHNITPAQWKKLLTLEAKFLPNKRALESWLDKAKKVTSLSKGEAMIEV 63 +R + + A W LLTL + P + + L ++ S ++ + Sbjct: 51 IERTYA------ASGLNAAGWDLLLTL-YRSAPPEGLRPTELSALAAISGPSTSNRIVRL 103 Query: 64 EYLVKIALHHQKWYYRLDNPLFTDG---LYDRVSERLDALQEQFPELFDED 111 I + R + T L + A ++ Sbjct: 104 LEKGLIERREDERDRRSASIRLTPQGRALVTHLLPAHLATTQRVLAPLSAQ 154 >d2hk6a1 c.92.1.1 (A:2-310) Ferrochelatase {Bacillus subtilis [TaxId: 1423]} Length = 309 Score = 24.7 bits (53), Expect = 2.6 Identities = 10/42 (23%), Positives = 14/42 (33%), Gaps = 5/42 (11%) Query: 61 IEVEYLVKIALHHQKWYYRL----DNPLFTDGLYDRVSERLD 98 + E + YYR P F D L V ++L Sbjct: 268 NDYEC-KVVTDDIGASYYRPEMPNAKPEFIDALATVVLKKLG 308 >d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator PA4135 {Pseudomonas aeruginosa [TaxId: 287]} Length = 136 Score = 23.8 bits (51), Expect = 4.4 Identities = 14/99 (14%), Positives = 34/99 (34%), Gaps = 5/99 (5%) Query: 15 NEHNITPAQWKKLLTLEAKFLPNKRALESWLDKAKKVTS--LSKGEAMIEVEYLVKIALH 72 N+H +T QW+ + L + L + + + L++ E V Sbjct: 24 NQHGLTEQQWRVIRILRQQGEMESYQLANQACILRPSMTGVLARLERDGIVRRWKAPKDQ 83 Query: 73 HQKWYYRLDNPLFTDGLYDRVSERLDALQEQFPELFDED 111 + + + + +S ++ ++ E F E+ Sbjct: 84 RRVYVNLTEKGQ---QCFVSMSGDMEKNYQRIQERFGEE 119 >d1dvoa_ a.136.1.1 (A:) Repressor of bacterial conjugation FinO {Escherichia coli [TaxId: 562]} Length = 152 Score = 23.7 bits (51), Expect = 4.5 Identities = 8/23 (34%), Positives = 13/23 (56%) Query: 91 DRVSERLDALQEQFPELFDEDHP 113 + E ++ L+ +P LFD D P Sbjct: 39 PTLDEAVNTLKPWWPGLFDGDTP 61 >d2bdua1 c.108.1.21 (A:7-297) Cytosolic 5'-nucleotidase III {Mouse (Mus musculus) [TaxId: 10090]} Length = 291 Score = 23.0 bits (49), Expect = 6.7 Identities = 8/38 (21%), Positives = 17/38 (44%) Query: 80 LDNPLFTDGLYDRVSERLDALQEQFPELFDEDHPWNTV 117 +++ L L DRV E L+ + + + ++ V Sbjct: 246 VEHILKIGYLNDRVDELLEKYMDSYDIVLVKEESLEVV 283 >d1lr5a_ b.82.1.2 (A:) Auxin binding protein {Maize (Zea mays) [TaxId: 4577]} Length = 160 Score = 22.5 bits (47), Expect = 9.6 Identities = 11/32 (34%), Positives = 15/32 (46%) Query: 80 LDNPLFTDGLYDRVSERLDALQEQFPELFDED 111 + P LYD S A +FP ++DED Sbjct: 123 ISRPPAKIFLYDDWSMPHTAAVLKFPFVWDED 154 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.319 0.135 0.419 Gapped Lambda K H 0.267 0.0568 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 484,873 Number of extensions: 20858 Number of successful extensions: 82 Number of sequences better than 10.0: 1 Number of HSP's gapped: 81 Number of HSP's successfully gapped: 31 Length of query: 119 Length of database: 2,407,596 Length adjustment: 74 Effective length of query: 45 Effective length of database: 1,391,576 Effective search space: 62620920 Effective search space used: 62620920 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 47 (22.2 bits)