HHsearch alignment for GI: 254781197 and conserved domain: COG0703
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism].
Probab=97.57 E-value=0.0001 Score=48.14 Aligned_cols=141 Identities=19% Similarity=0.224 Sum_probs=66.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEE-----EEECCC-CCC-CCCCCCCCCCCCCHHHHHHHCCCCEEEEEEEE
Q ss_conf 97189998899999899999998518981799-----861188-899-98323553000123542111027636445550
Q gi|254781197|r 1 MAHIFVLIGASGVGETTIAKQVVLNSEYLVMP-----VGVTTR-RPR-VDEKQYIDYRFISQSQFKGWKHTGLFIETTKV 73 (185)
Q Consensus 1 m~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~-----is~TTR-~~R-~~E~~g~dY~Fvs~e~F~~~i~~g~flE~~~~ 73 (185)
T Consensus 1 ~~~~IvLiG~mGaGKSTIGr~LAk~L-~~~F~D~D~~Ie~~~g~sI~eIF~~~GE~-------~FR~-------~E~--- 62 (172)
T COG0703 1 RNMNIVLIGFMGAGKSTIGRALAKAL-NLPFIDTDQEIEKRTGMSIAEIFEEEGEE-------GFRR-------LET--- 62 (172)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHC-CCCCCCCHHHHHHHHCCCHHHHHHHHHHH-------HHHH-------HHH---
T ss_conf 99618997179997768999999981-99802246999999796999999998289-------9999-------999---
Q ss_pred CCCEEEEECCCHHHHH-------HHCCCCCCCCCCCCHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHCC------CCCH
Q ss_conf 4860554432002333-------20123200243100013321055310112221332899999886303------4207
Q gi|254781197|r 74 RDEYYGYLKEDINNPM-------EHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPPSEAELIQRRIKRR------EDTP 140 (185)
Q Consensus 74 ~g~~YGt~~~~i~~~~-------~~g~~~il~id~~G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~------~d~~ 140 (185)
T Consensus 63 ---------~vl~~l~~~~~~ViaTGGG~v~--~~e-nr~---~l~~~g~vv~L~~-~~e~l~~Rl~~~~~RPll~~~~~ 126 (172)
T COG0703 63 ---------EVLKELLEEDNAVIATGGGAVL--SEE-NRN---LLKKRGIVVYLDA-PFETLYERLQRDRKRPLLQTEDP 126 (172)
T ss_pred ---------HHHHHHHHCCCEEEECCCCCCC--CHH-HHH---HHHHCCEEEEEEC-CHHHHHHHHCCCCCCCCCCCCCH
T ss_conf ---------9999986269959977986116--899-999---9984885899969-99999998234667986567776
Q ss_pred -H----HHHHHHHHHHHCCCEEEECCCH-HHHHHHHHHHHHHHH
Q ss_conf -8----9999999876369889993978-999999999999998
Q gi|254781197|r 141 -F----NLDPDLFGKNHSYSFTIVNNHL-PTACRQVGFIREFVK 178 (185)
Q Consensus 141 -~----~i~~rl~~~~~~fD~~IvNddl-e~a~~~l~~I~e~~~ 178 (185)
T Consensus 127 ~~~l~~L~~~R~~~Y~e~a~~~~~~~~~~~~v~~~---i~~~l~ 167 (172)
T COG0703 127 REELEELLEERQPLYREVADFIIDTDDRSEEVVEE---ILEALE 167 (172)
T ss_pred HHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHHH---HHHHHH
T ss_conf 89999999998999997274884489984899999---999998