HHsearch alignment for GI: 254781197 and conserved domain: PRK00131
>PRK00131 aroK shikimate kinase; Reviewed.
Probab=98.30 E-value=2.2e-06 Score=57.86 Aligned_cols=143 Identities=20% Similarity=0.212 Sum_probs=67.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCC--CCCC--CHHHHHHHCCCCEEEEEEEECCCE
Q ss_conf 718999889999989999999851898179986118889998323553--0001--235421110276364455504860
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYID--YRFI--SQSQFKGWKHTGLFIETTKVRDEY 77 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~d--Y~Fv--s~e~F~~~i~~g~flE~~~~~g~~ 77 (185)
T Consensus 4 ~~nI~liG~~GsGKTtvgk~LA~~L~-~~fi--D~D~~Ie--~~~g~si~~if~~~Ge~~FR~~-------E~------- 64 (175)
T PRK00131 4 GPNIVLIGMMGAGKSTIGRLLAKRLG-YEFI--DTDHLIE--ARAGKSIPEIFEEEGEAGFREL-------EE------- 64 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHC-CCCC--CCCHHHH--HHHCCCHHHHHHHHCHHHHHHH-------HH-------
T ss_conf 98089888999998999999999959-6902--3988999--7616999999998588999999-------99-------
Q ss_pred EEEECCCHHH-------HHHHCCCCCCCCCCCCHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHCC-------CCCHHHH
Q ss_conf 5544320023-------3320123200243100013321055310112221332899999886303-------4207899
Q gi|254781197|r 78 YGYLKEDINN-------PMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPPSEAELIQRRIKRR-------EDTPFNL 143 (185)
Q Consensus 78 YGt~~~~i~~-------~~~~g~~~il~id~~G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~-------~d~~~~i 143 (185)
T Consensus 65 -----~~l~~l~~~~~~VIstGGG~v~--~~~~~~~L~~----~g~vV~L~~-~~e~l~~Rl~~~~~RPll~~~~~~~~l 132 (175)
T PRK00131 65 -----EVLAELLQRHNLVISTGGGAVL--REENRALLRE----RGTVVYLDA-SFEELLRRLARDRNRPLLQTEDPKEKL 132 (175)
T ss_pred -----HHHHHHCCCCCEEEECCCCCCC--CHHHHHHHHC----CCCEEEEEC-CHHHHHHHHCCCCCCCCCCCCCHHHHH
T ss_conf -----9999651479859974898226--8899999981----693799857-999999986489999878899869999
Q ss_pred ----HHHHHHHHHCCCEEEECC--CHHHHHHHHHHHHH
Q ss_conf ----999998763698899939--78999999999999
Q gi|254781197|r 144 ----DPDLFGKNHSYSFTIVNN--HLPTACRQVGFIRE 175 (185)
Q Consensus 144 ----~~rl~~~~~~fD~~IvNd--dle~a~~~l~~I~e 175 (185)
T Consensus 133 ~~l~~~R~~~Y~~~Ad~~Idt~~~s~~ei~~~Ii~~L~ 170 (175)
T PRK00131 133 RALYEERDPLYEEVADLTIETDRRSPEEVVNEILELLE 170 (175)
T ss_pred HHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHH
T ss_conf 99999999989753899998999999999999999999