HHsearch alignment for GI: 254781197 and conserved domain: PRK00625
>PRK00625 shikimate kinase; Provisional.
Probab=98.02 E-value=5.6e-06 Score=55.49 Aligned_cols=132 Identities=14% Similarity=0.064 Sum_probs=68.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEE------ECCCCCCC--C---CCCCCCCCCCCHHHHHHHCCCCEEEEEEEE
Q ss_conf 999889999989999999851898179986------11888999--8---323553000123542111027636445550
Q gi|254781197|r 5 FVLIGASGVGETTIAKQVVLNSEYLVMPVG------VTTRRPRV--D---EKQYIDYRFISQSQFKGWKHTGLFIETTKV 73 (185)
Q Consensus 5 ivi~GpSGsGK~tl~~~L~~~~~~~~~~is------~TTR~~R~--~---E~~g~dY~Fvs~e~F~~~i~~g~flE~~~~ 73 (185)
T Consensus 3 I~LIG~mGsGKStiGk~LA~~l~-~~FvD~D~~Ie~~~~~~i~~Si~eIf~~~G-------E~~FR~~-------E~~~l 67 (173)
T PRK00625 3 IFLCGLPTVGKTSFGKALAKFLS-LPFFDTDDLIVSNYHGALYSSPKEIYQAYG-------EEGFCEE-------EALAL 67 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC-CCEEECHHHHHHHHCCCCCCCHHHHHHHHC-------HHHHHHH-------HHHHH
T ss_conf 99989999988999999999939-995774999999868652356999999718-------9999999-------99999
Q ss_pred CCCEEEEECCCHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHCCC----CCH----HHHHH
Q ss_conf 4860554432002333201232002431000133210553101122213328999998863034----207----89999
Q gi|254781197|r 74 RDEYYGYLKEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPPSEAELIQRRIKRRE----DTP----FNLDP 145 (185)
Q Consensus 74 ~g~~YGt~~~~i~~~~~~g~~~il~id~~G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~~----d~~----~~i~~ 145 (185)
T Consensus 68 ~~l----~~~--~~VIstGGG~v~~--~~n~~~Lk~----~g~vV~L~~-~~e~i~~Rl~~rpl~~~~~~~~~l~~l~~e 134 (173)
T PRK00625 68 ESL----PVI--PSIVALGGGTLMH--EESYDHIRN----RGLLVLLSL-PIATIYQRLQKRGLPERLKKTPSLEEILTQ 134 (173)
T ss_pred HHH----CCC--CCEEECCCCCCCC--HHHHHHHHH----CCEEEEEEC-CHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf 973----248--9689748850178--999999996----899999839-999999998269987778835799999999
Q ss_pred HHHHHHHCCCEEEECCCHH
Q ss_conf 9998763698899939789
Q gi|254781197|r 146 DLFGKNHSYSFTIVNNHLP 164 (185)
Q Consensus 146 rl~~~~~~fD~~IvNddle 164 (185)
T Consensus 135 R~~lY~~~AD~iI~~d~~s 153 (173)
T PRK00625 135 RIDRMREIADYIFSLDHVA 153 (173)
T ss_pred HHHHHHHHCCEEEECCCCC
T ss_conf 9999999799999689976