HHsearch alignment for GI: 254781197 and conserved domain: PRK03731
>PRK03731 aroL shikimate kinase II; Reviewed.
Probab=98.22 E-value=4.8e-06 Score=55.93 Aligned_cols=151 Identities=15% Similarity=0.103 Sum_probs=68.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCC--CCCC--CHHHHHHHCCCCEEEEEEEECCC
Q ss_conf 9718999889999989999999851898179986118889998323553--0001--23542111027636445550486
Q gi|254781197|r 1 MAHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYID--YRFI--SQSQFKGWKHTGLFIETTKVRDE 76 (185)
Q Consensus 1 m~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~d--Y~Fv--s~e~F~~~i~~g~flE~~~~~g~ 76 (185)
T Consensus 1 M~~~I~LiG~mGsGKstiGk~LA~~L-~~~fi--D~D~~Ie--~~~g~sI~eif~~~Ge~~FR~~E~--~~l~~--l--- 68 (172)
T PRK03731 1 MTQPLFLVGPRGCGKTTVGMALAQAL-GYRFV--DTDLWLQ--STLQMTVAEIVEREGWAGFRARES--AALEA--V--- 68 (172)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHH-CCCEE--ECCHHHH--HHHCCCHHHHHHHHCHHHHHHHHH--HHHHH--H---
T ss_conf 99988998899998899999999985-99979--7869999--883989999999839899999999--99998--4---
Q ss_pred EEEEECCCHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHH------C----CCCCHHHHH--
Q ss_conf 0554432002333201232002431000133210553101122213328999998863------0----342078999--
Q gi|254781197|r 77 YYGYLKEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPPSEAELIQRRIK------R----REDTPFNLD-- 144 (185)
Q Consensus 77 ~YGt~~~~i~~~~~~g~~~il~id~~G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~------R----~~d~~~~i~-- 144 (185)
T Consensus 69 ---~-~--~~~VIstGGG~v~~--~~n~~~L~~----~g~vv~L~~-~~~~l~~Rl~~~~~~~~RPll~~~~~~~~i~~l 135 (172)
T PRK03731 69 ---T-A--PSTVVATGGGIILT--EENRAFMRN----NGIVIYLCA-PVSVLANRLEADPEEDQRPTLTGKPLSEEVAEV 135 (172)
T ss_pred ---C-C--CCEEEEECCCCCCC--HHHHHHHHH----CCEEEEEEC-CHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf ---2-7--88289807864268--999999996----899999979-999999998138778989878899879999999
Q ss_pred --HHHHHHHHCCCEEEECC-CHHHHHHHHHHHHHHHHH
Q ss_conf --99998763698899939-789999999999999985
Q gi|254781197|r 145 --PDLFGKNHSYSFTIVNN-HLPTACRQVGFIREFVKQ 179 (185)
Q Consensus 145 --~rl~~~~~~fD~~IvNd-dle~a~~~l~~I~e~~~~ 179 (185)
T Consensus 136 ~~~R~~~Y~~~a~~ii~~~~~~~~i~~~---Il~~L~e 170 (172)
T PRK03731 136 LAERDALYREVAHHIIDATQPPSQVVSE---ILSALAQ 170 (172)
T ss_pred HHHHHHHHHHHCCEEECCCCCHHHHHHH---HHHHHHH
T ss_conf 9999999998489988798999999999---9998732