HHsearch alignment for GI: 254781197 and conserved domain: PRK13851
>PRK13851 type IV secretion system protein VirB11; Provisional.
Probab=96.71 E-value=0.002 Score=40.56 Aligned_cols=40 Identities=20% Similarity=0.163 Sum_probs=27.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCC-EEEEEEECCCCCC
Q ss_conf 718999889999989999999851898-1799861188899
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEY-LVMPVGVTTRRPR 41 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~-~~~~is~TTR~~R 41 (185)
T Consensus 162 r~NIlIsGgTGSGKTTllnALl~~IP~~eRIvtIEDt~EL~ 202 (343)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELV 202 (343)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCC
T ss_conf 98899988898619999999996289655279961150025