HHsearch alignment for GI: 254781197 and conserved domain: PRK13947
>PRK13947 shikimate kinase; Provisional.
Probab=98.02 E-value=2.4e-05 Score=51.88 Aligned_cols=149 Identities=19% Similarity=0.203 Sum_probs=67.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCC--CCC--CCHHHHHHHCCCCEEEEEEEECCC
Q ss_conf 9718999889999989999999851898179986118889998323553--000--123542111027636445550486
Q gi|254781197|r 1 MAHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYID--YRF--ISQSQFKGWKHTGLFIETTKVRDE 76 (185)
Q Consensus 1 m~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~d--Y~F--vs~e~F~~~i~~g~flE~~~~~g~ 76 (185)
T Consensus 1 mkn-I~LiG~mGsGKTtiGk~La~~L~-~~fi--D~D~~Ie--~~~g~sI~eIf~~~GE~~FR~~-------E~~~l~~- 66 (171)
T PRK13947 1 MKN-IVLIGFMGTGKTTVGKKVATTLS-FGFI--DTDKEIE--KMAGMTVSEIFEKDGEVRFRSL-------EKAAVRK- 66 (171)
T ss_pred CCC-EEEECCCCCCHHHHHHHHHHHHC-CCEE--ECHHHHH--HHCCCCHHHHHHHHCHHHHHHH-------HHHHHHH-
T ss_conf 985-89979999988999999999979-6989--8749999--8829988999998489999999-------9999997-
Q ss_pred EEEEECCCHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHCC-------CCCHHHH----HH
Q ss_conf 055443200233320123200243100013321055310112221332899999886303-------4207899----99
Q gi|254781197|r 77 YYGYLKEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPPSEAELIQRRIKRR-------EDTPFNL----DP 145 (185)
Q Consensus 77 ~YGt~~~~i~~~~~~g~~~il~id~~G~~~lk~~~~~~~~~IfI~pps~~~L~~RL~~R~-------~d~~~~i----~~ 145 (185)
T Consensus 67 ~----~~~~~~VistGGG~v~--~~~n~~~l~~----~g~vi~L~~-~~~~l~~Rl~~~~~RPll~~~~~~~~l~~l~~~ 135 (171)
T PRK13947 67 A----ARLKNLVIATGGGVVL--NPENIVQLRK----NGVLICLVA-RPEVILRRIKKKKDRPLLMVGNPEERIRELLKE 135 (171)
T ss_pred H----CCCCCEEEECCCCCCC--CHHHHHHHHH----CCEEEEECC-CHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 4----0368979978985006--9999999996----898999739-999999997289999979899879999999999
Q ss_pred HHHHHHHCCCEEEECC--CHHHHHHHHHHHHH
Q ss_conf 9998763698899939--78999999999999
Q gi|254781197|r 146 DLFGKNHSYSFTIVNN--HLPTACRQVGFIRE 175 (185)
Q Consensus 146 rl~~~~~~fD~~IvNd--dle~a~~~l~~I~e 175 (185)
T Consensus 136 R~~~Y-~~Ad~~I~~~~~s~~ei~~~Ii~~~~ 166 (171)
T PRK13947 136 REPFY-RFADFTIDTSDMTIDEVAEEIIKAYI 166 (171)
T ss_pred HHHHH-HHCCEEEECCCCCHHHHHHHHHHHHH
T ss_conf 99999-97698988998999999999999999