HHsearch alignment for GI: 254781197 and conserved domain: TIGR00382

>TIGR00382 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX; InterPro: IPR004487 ClpX is a member of the HSP (heat-shock protein) 100 family. Gel filtration and electron microscopy showed that ClpX subunits associate to form a six-membered ring that is stabilized by binding of ATP or nonhydrolyzable analogs of ATP . It functions as an ATP-depedent molecular chaperone and is the regulatory subunit of the ClpXP protease . ClpXP is involved in DNA damage repair, stationary-phase gene expression, and ssrA-mediated protein quality control. To date more than 50 proteins include transcription factors, metabolic enzymes, and proteins involved in the starvation and oxidative stress responses have been identified as substrates . The N-terminal domain of ClpX is a C4-type zinc binding domain (ZBD) involved in substrate recognition. ZBD forms a very stable dimer that is essential for promoting the degradation of some typical ClpXP substrates such as lO and MuA . ; GO: 0005515 protein binding, 0005524 ATP binding, 0016887 ATPase activity, 0015031 protein transport.
Probab=97.05  E-value=0.00055  Score=43.87  Aligned_cols=92  Identities=14%  Similarity=0.208  Sum_probs=53.9

Q ss_pred             EEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEE-EEEEEECCCEEEEECC
Q ss_conf             999889999989999999851898179986118889998323553000123542111027636-4455504860554432
Q gi|254781197|r    5 FVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLF-IETTKVRDEYYGYLKE   83 (185)
Q Consensus         5 ivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i~~g~f-lE~~~~~g~~YGt~~~   83 (185)
T Consensus       155 ILLiGPTGSGKTLLAqTLA~~L-~VPfAiADATtLTEAGYV-GED---V-ENIL~~Llq~ad~DV~kA~-kGIi---YID  224 (452)
T TIGR00382       155 ILLIGPTGSGKTLLAQTLARIL-NVPFAIADATTLTEAGYV-GED---V-ENILLKLLQAADYDVEKAQ-KGII---YID  224 (452)
T ss_pred             EEEECCCCCCHHHHHHHHHHHC-CCCEEECCHHHHHCCCCC-CCC---H-HHHHHHHHHHCCCCHHHHC-CCEE---EEE
T ss_conf             2454688852689999999873-887421111102006642-422---8-8999999874145524527-8508---984


Q ss_pred             CHHHHHH--HCCCCCCCCCCCCHHH
Q ss_conf             0023332--0123200243100013
Q gi|254781197|r   84 DINNPME--HGYDILLILTHQGLAP  106 (185)
Q Consensus        84 ~i~~~~~--~g~~~il~id~~G~~~  106 (185)
T Consensus       225 EIDKIaRkSEN~SITRDVSGEGVQQ  249 (452)
T TIGR00382       225 EIDKIARKSENPSITRDVSGEGVQQ  249 (452)
T ss_pred             CCCCHHHHCCCCEEEEEECCCHHHH
T ss_conf             2231012157780112217554999