HHsearch alignment for GI: 254781197 and conserved domain: TIGR00382
>TIGR00382 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX; InterPro: IPR004487 ClpX is a member of the HSP (heat-shock protein) 100 family. Gel filtration and electron microscopy showed that ClpX subunits associate to form a six-membered ring that is stabilized by binding of ATP or nonhydrolyzable analogs of ATP . It functions as an ATP-depedent molecular chaperone and is the regulatory subunit of the ClpXP protease . ClpXP is involved in DNA damage repair, stationary-phase gene expression, and ssrA-mediated protein quality control. To date more than 50 proteins include transcription factors, metabolic enzymes, and proteins involved in the starvation and oxidative stress responses have been identified as substrates . The N-terminal domain of ClpX is a C4-type zinc binding domain (ZBD) involved in substrate recognition. ZBD forms a very stable dimer that is essential for promoting the degradation of some typical ClpXP substrates such as lO and MuA . ; GO: 0005515 protein binding, 0005524 ATP binding, 0016887 ATPase activity, 0015031 protein transport.
Probab=97.05 E-value=0.00055 Score=43.87 Aligned_cols=92 Identities=14% Similarity=0.208 Sum_probs=53.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEE-EEEEEECCCEEEEECC
Q ss_conf 999889999989999999851898179986118889998323553000123542111027636-4455504860554432
Q gi|254781197|r 5 FVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLF-IETTKVRDEYYGYLKE 83 (185)
Q Consensus 5 ivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i~~g~f-lE~~~~~g~~YGt~~~ 83 (185)
T Consensus 155 ILLiGPTGSGKTLLAqTLA~~L-~VPfAiADATtLTEAGYV-GED---V-ENIL~~Llq~ad~DV~kA~-kGIi---YID 224 (452)
T TIGR00382 155 ILLIGPTGSGKTLLAQTLARIL-NVPFAIADATTLTEAGYV-GED---V-ENILLKLLQAADYDVEKAQ-KGII---YID 224 (452)
T ss_pred EEEECCCCCCHHHHHHHHHHHC-CCCEEECCHHHHHCCCCC-CCC---H-HHHHHHHHHHCCCCHHHHC-CCEE---EEE
T ss_conf 2454688852689999999873-887421111102006642-422---8-8999999874145524527-8508---984
Q ss_pred CHHHHHH--HCCCCCCCCCCCCHHH
Q ss_conf 0023332--0123200243100013
Q gi|254781197|r 84 DINNPME--HGYDILLILTHQGLAP 106 (185)
Q Consensus 84 ~i~~~~~--~g~~~il~id~~G~~~ 106 (185)
T Consensus 225 EIDKIaRkSEN~SITRDVSGEGVQQ 249 (452)
T TIGR00382 225 EIDKIARKSENPSITRDVSGEGVQQ 249 (452)
T ss_pred CCCCHHHHCCCCEEEEEECCCHHHH
T ss_conf 2231012157780112217554999