HHsearch alignment for GI: 254781197 and conserved domain: TIGR00929
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family; InterPro: IPR004346 This family includes the Helicobacter pylori protein CagE (see examples), which together with other proteins from the cag pathogenicity island (PAI), encodes a type IV transporter secretion system. The precise role of CagE is not known, but studies in animal models have shown that it is essential for pathogenesis in Helicobacter pylori induced gastritis and peptic ulceration . Indeed, the expression of the cag PAI has been shown to be essential for stimulating human gastric epithelial cell apoptosis in vitro . Similar type IV transport systems are also found in other bacteria. This family includes proteins from the trb and Vir conjugal transfer systems in Agrobacterium tumefaciens and homologues of VirB proteins from other species.; GO: 0005524 ATP binding.
Probab=96.16 E-value=0.0039 Score=38.93 Aligned_cols=26 Identities=19% Similarity=0.372 Sum_probs=21.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEE
Q ss_conf 99988999998999999985189817
Q gi|254781197|r 5 FVLIGASGVGETTIAKQVVLNSEYLV 30 (185)
Q Consensus 5 ivi~GpSGsGK~tl~~~L~~~~~~~~ 30 (185)
T Consensus 519 T~IfG~~G~GKTtLl~fL~a~~~ky~ 544 (931)
T TIGR00929 519 TLIFGPTGSGKTTLLNFLLAQLQKYK 544 (931)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCC
T ss_conf 77888889846999999999974248