HHsearch alignment for GI: 254781197 and conserved domain: TIGR01420
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=96.38 E-value=0.0029 Score=39.68 Aligned_cols=74 Identities=14% Similarity=0.279 Sum_probs=39.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHH----CCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEEECCCEEE
Q ss_conf 8999889999989999999851----898179986118889998323553000123542111027636445550486055
Q gi|254781197|r 4 IFVLIGASGVGETTIAKQVVLN----SEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYG 79 (185)
Q Consensus 4 iivi~GpSGsGK~tl~~~L~~~----~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i~~g~flE~~~~~g~~YG 79 (185)
T Consensus 129 LiLVTGPTGSGKSTTlAsmIDyIN~~~~~HIiTI-----------EDPIEyvh~~~~sl---i~QREvG~DT~s---F-- 189 (350)
T TIGR01420 129 LILVTGPTGSGKSTTLASMIDYINKNKAGHIITI-----------EDPIEYVHKNKRSL---INQREVGLDTLS---F-- 189 (350)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEE-----------ECCEEEEECCCEEE---EECCCCCCCHHH---H--
T ss_conf 3898768898678999999978740388882563-----------17731410477024---543624675457---9--
Q ss_pred EECCCHHHHHHHCCCCCCC
Q ss_conf 4432002333201232002
Q gi|254781197|r 80 YLKEDINNPMEHGYDILLI 98 (185)
Q Consensus 80 t~~~~i~~~~~~g~~~il~ 98 (185)
T Consensus 190 --~~ALraALReDPDvILi 206 (350)
T TIGR01420 190 --ANALRAALREDPDVILI 206 (350)
T ss_pred --HHHHHHHHCCCCCEEEE
T ss_conf --99976841028988998