HHsearch alignment for GI: 254781197 and conserved domain: TIGR01420

>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=96.38  E-value=0.0029  Score=39.68  Aligned_cols=74  Identities=14%  Similarity=0.279  Sum_probs=39.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHHH----CCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEEECCCEEE
Q ss_conf             8999889999989999999851----898179986118889998323553000123542111027636445550486055
Q gi|254781197|r    4 IFVLIGASGVGETTIAKQVVLN----SEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYG   79 (185)
Q Consensus         4 iivi~GpSGsGK~tl~~~L~~~----~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i~~g~flE~~~~~g~~YG   79 (185)
T Consensus       129 LiLVTGPTGSGKSTTlAsmIDyIN~~~~~HIiTI-----------EDPIEyvh~~~~sl---i~QREvG~DT~s---F--  189 (350)
T TIGR01420       129 LILVTGPTGSGKSTTLASMIDYINKNKAGHIITI-----------EDPIEYVHKNKRSL---INQREVGLDTLS---F--  189 (350)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEE-----------ECCEEEEECCCEEE---EECCCCCCCHHH---H--
T ss_conf             3898768898678999999978740388882563-----------17731410477024---543624675457---9--


Q ss_pred             EECCCHHHHHHHCCCCCCC
Q ss_conf             4432002333201232002
Q gi|254781197|r   80 YLKEDINNPMEHGYDILLI   98 (185)
Q Consensus        80 t~~~~i~~~~~~g~~~il~   98 (185)
T Consensus       190 --~~ALraALReDPDvILi  206 (350)
T TIGR01420       190 --ANALRAALREDPDVILI  206 (350)
T ss_pred             --HHHHHHHHCCCCCEEEE
T ss_conf             --99976841028988998