HHsearch alignment for GI: 254781197 and conserved domain: TIGR01842
>TIGR01842 type_I_sec_PrtD type I secretion system ATPase; InterPro: IPR010128 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0015031 protein transport, 0016021 integral to membrane.
Probab=97.73 E-value=2.8e-05 Score=51.46 Aligned_cols=47 Identities=21% Similarity=0.221 Sum_probs=33.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 718999889999989999999851898179986118889998323553000123542
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQF 58 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F 58 (185)
T Consensus 356 Ge~laIIGPSgSGKStLaR~~vG~W~~~~G~VR----------LDGadl~qWD~e~l 402 (556)
T TIGR01842 356 GEALAIIGPSGSGKSTLARILVGIWPPASGSVR----------LDGADLKQWDRETL 402 (556)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCCCCCCCCEE----------EEHHHHHCCCHHHC
T ss_conf 745888747865258898788721013565336----------40334402375365