HHsearch alignment for GI: 254781197 and conserved domain: TIGR02533
>TIGR02533 type_II_gspE general secretory pathway protein E; InterPro: IPR013369 GspE, the E protein of the type II secretion system, is also referred to as the main terminal branch of the general secretion pathway. ; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015628 protein secretion by the type II secretion system, 0015627 type II protein secretion system complex.
Probab=96.68 E-value=0.0013 Score=41.66 Aligned_cols=104 Identities=22% Similarity=0.375 Sum_probs=56.2
Q ss_pred EEEEECCCCCCH-HHHHHHHHH-HCC--CEEEEEEECCCCCCCCCCCCCCCCC--CCHHHHHHHCCCCEEEEEEEECCCE
Q ss_conf 899988999998-999999985-189--8179986118889998323553000--1235421110276364455504860
Q gi|254781197|r 4 IFVLIGASGVGE-TTIAKQVVL-NSE--YLVMPVGVTTRRPRVDEKQYIDYRF--ISQSQFKGWKHTGLFIETTKVRDEY 77 (185)
Q Consensus 4 iivi~GpSGsGK-~tl~~~L~~-~~~--~~~~~is~TTR~~R~~E~~g~dY~F--vs~e~F~~~i~~g~flE~~~~~g~~ 77 (185)
T Consensus 247 IiLVTGPTGSGKtTTLYaaL~~LN~~~~NIlTv------------EDPVEY~i~GIgQ~Qvn~kIg----l--------- 301 (495)
T TIGR02533 247 IILVTGPTGSGKTTTLYAALSRLNTPERNILTV------------EDPVEYQIEGIGQIQVNPKIG----L--------- 301 (495)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEE------------ECCEEEEECCCCEEEECCCCC----H---------
T ss_conf 188417789852588999998635899715686------------578247624876365146543----0---------
Q ss_pred EEEECCCHHHHHHHCCCCCCC-------------------------CCCCCHH-HHHHCCCCCHHHHHHCCCCHH-HHHH
Q ss_conf 554432002333201232002-------------------------4310001-332105531011222133289-9999
Q gi|254781197|r 78 YGYLKEDINNPMEHGYDILLI-------------------------LTHQGLA-PLKKLYEDQVTSIFIAPPSEA-ELIQ 130 (185)
Q Consensus 78 YGt~~~~i~~~~~~g~~~il~-------------------------id~~G~~-~lk~~~~~~~~~IfI~pps~~-~L~~ 130 (185)
T Consensus 302 --TFA~GLRaILRQDPDiiMvGEIRD~ETA~IAiQASLTGHLVLSTLHTNDAAgAvtRL~DMGvEP-FL~aSsl~GVLAQ 378 (495)
T TIGR02533 302 --TFAAGLRAILRQDPDIIMVGEIRDLETAQIAIQASLTGHLVLSTLHTNDAAGAVTRLIDMGVEP-FLLASSLLGVLAQ 378 (495)
T ss_pred --HHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHH
T ss_conf --3888878864279988998231606899999987643257655655401544665553258640-4899999999986
Q ss_pred HHHHC
Q ss_conf 88630
Q gi|254781197|r 131 RRIKR 135 (185)
Q Consensus 131 RL~~R 135 (185)
T Consensus 379 RLVRr 383 (495)
T TIGR02533 379 RLVRR 383 (495)
T ss_pred HHHHH
T ss_conf 33433