HHsearch alignment for GI: 254781197 and conserved domain: TIGR02639

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=97.42  E-value=0.00011  Score=47.88  Aligned_cols=23  Identities=39%  Similarity=0.735  Sum_probs=20.8

Q ss_pred             EEEECCCCCCHHHHHHHHHHHCC
Q ss_conf             99988999998999999985189
Q gi|254781197|r    5 FVLIGASGVGETTIAKQVVLNSE   27 (185)
Q Consensus         5 ivi~GpSGsGK~tl~~~L~~~~~   27 (185)
T Consensus       530 FLF~GPTGVGKTElak~LA~~LG  552 (774)
T TIGR02639       530 FLFVGPTGVGKTELAKQLAEELG  552 (774)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC
T ss_conf             88647989625788999999708