HHsearch alignment for GI: 254781197 and conserved domain: TIGR03375
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.44 E-value=0.00016 Score=46.99 Aligned_cols=51 Identities=20% Similarity=0.162 Sum_probs=34.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHC
Q ss_conf 7189998899999899999998518981799861188899983235530001235421110
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWK 62 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i 62 (185)
T Consensus 491 Ge~vaIvG~sGsGKSTL~kll~Gl~~p~~G~i~----------idg~~~~~~~~~~~r~~i 541 (694)
T TIGR03375 491 GEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVL----------LDGVDIRQIDPADLRRNI 541 (694)
T ss_pred CCEEEEEECCCCCHHHHHHHHCCCCCCCCCEEE----------ECCEECCCCCHHHHHHHC
T ss_conf 978999805898788999985567589988799----------898542549999997302