HHsearch alignment for GI: 254781197 and conserved domain: TIGR03522
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=96.26 E-value=0.0043 Score=38.69 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=21.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 718999889999989999999851
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
T Consensus 28 Gei~gllGpNGAGKTTl~~~l~Gl 51 (301)
T TIGR03522 28 GRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 819999999998199999999679