HHsearch alignment for GI: 254781197 and conserved domain: cd01878

>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=96.72  E-value=0.0019  Score=40.73  Aligned_cols=51  Identities=12%  Similarity=0.101  Sum_probs=33.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCC---CCCCCCCCCH
Q ss_conf             899988999998999999985189817998611888999832---3553000123
Q gi|254781197|r    4 IFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEK---QYIDYRFISQ   55 (185)
Q Consensus         4 iivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~---~g~dY~Fvs~   55 (185)
T Consensus        43 ~VaivG~PNvGKSTLlN~L~g~~~-~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT   96 (204)
T cd01878          43 TVALVGYTNAGKSTLFNALTGADV-YAEDQLFATLDPTTRRLRLPDGREVLLTDT   96 (204)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCC-EEECCCCCCCCCEEEEEEECCCCEEEEEEC
T ss_conf             799988999989999999948996-341567764576366899569977999836