HHsearch alignment for GI: 254781197 and conserved domain: cd01878
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=96.72 E-value=0.0019 Score=40.73 Aligned_cols=51 Identities=12% Similarity=0.101 Sum_probs=33.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCC---CCCCCCCCCH
Q ss_conf 899988999998999999985189817998611888999832---3553000123
Q gi|254781197|r 4 IFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEK---QYIDYRFISQ 55 (185)
Q Consensus 4 iivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~---~g~dY~Fvs~ 55 (185)
T Consensus 43 ~VaivG~PNvGKSTLlN~L~g~~~-~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT 96 (204)
T cd01878 43 TVALVGYTNAGKSTLFNALTGADV-YAEDQLFATLDPTTRRLRLPDGREVLLTDT 96 (204)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC-EEECCCCCCCCCEEEEEEECCCCEEEEEEC
T ss_conf 799988999989999999948996-341567764576366899569977999836