HHsearch alignment for GI: 254781197 and conserved domain: cd03219
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.63 E-value=0.0017 Score=41.03 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=21.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 718999889999989999999851
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLN 25 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~ 25 (185)
T Consensus 26 Gei~gliG~nGaGKSTL~~~i~Gl 49 (236)
T cd03219 26 GEIHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 989999989997399999999679