HHsearch alignment for GI: 254781197 and conserved domain: cd03238
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.18 E-value=0.00039 Score=44.78 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=22.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 718999889999989999999851898
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEY 28 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~ 28 (185)
T Consensus 21 Ge~~~iiG~nGsGKSTLl~~~~~~~~~ 47 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGK 47 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 989999999999899999988876103