HHsearch alignment for GI: 254781197 and conserved domain: cd03251
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.84 E-value=2.3e-05 Score=51.99 Aligned_cols=51 Identities=16% Similarity=0.113 Sum_probs=34.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHC
Q ss_conf 7189998899999899999998518981799861188899983235530001235421110
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWK 62 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i 62 (185)
T Consensus 28 Ge~i~IvG~sGsGKSTLl~ll~gl~~p~~G~I~----------i~g~~i~~~~~~~~r~~i 78 (234)
T cd03251 28 GETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL----------IDGHDVRDYTLASLRRQI 78 (234)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE----------ECCEECCCCCHHHHHHCE
T ss_conf 999999989998299999999667667886899----------999996608999997317