HHsearch alignment for GI: 254781197 and conserved domain: cd03252
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=97.78 E-value=3.1e-05 Score=51.17 Aligned_cols=51 Identities=16% Similarity=0.085 Sum_probs=36.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHC
Q ss_conf 7189998899999899999998518981799861188899983235530001235421110
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWK 62 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L~~~~~~~~~~is~TTR~~R~~E~~g~dY~Fvs~e~F~~~i 62 (185)
T Consensus 28 G~~vaivG~sGsGKSTll~ll~gl~~p~~G~I~----------i~g~di~~~~~~~~r~~i 78 (237)
T cd03252 28 GEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL----------VDGHDLALADPAWLRRQV 78 (237)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE----------ECCEECCCCCHHHHHHHC
T ss_conf 999999999998599999999677657987899----------999995518999998601