HHsearch alignment for GI: 254781197 and conserved domain: cd03270
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.77 E-value=0.0011 Score=42.19 Aligned_cols=21 Identities=29% Similarity=0.586 Sum_probs=17.6
Q ss_pred CCEEEEECCCCCCHHHHHHHH
Q ss_conf 718999889999989999999
Q gi|254781197|r 2 AHIFVLIGASGVGETTIAKQV 22 (185)
Q Consensus 2 ~kiivi~GpSGsGK~tl~~~L 22 (185)
T Consensus 21 Ge~~aIvG~nGsGKSTL~~~~ 41 (226)
T cd03270 21 NKLVVITGVSGSGKSSLAFDT 41 (226)
T ss_pred CCEEEEECCCCCHHHHHHHHH
T ss_conf 989999878996098983616