HHsearch alignment for GI: 254781197 and conserved domain: cd03271

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.42  E-value=0.00013  Score=47.47  Aligned_cols=22  Identities=18%  Similarity=0.472  Sum_probs=19.4

Q ss_pred             CCEEEEECCCCCCHHHHHHHHH
Q ss_conf             7189998899999899999998
Q gi|254781197|r    2 AHIFVLIGASGVGETTIAKQVV   23 (185)
Q Consensus         2 ~kiivi~GpSGsGK~tl~~~L~   23 (185)
T Consensus        21 G~~~aIiG~sGsGKSTLl~~~L   42 (261)
T cd03271          21 GVLTCVTGVSGSGKSSLINDTL   42 (261)
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
T ss_conf             9999998799986999999998