HHsearch alignment for GI: 254781197 and conserved domain: cd04160
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=96.27 E-value=0.0036 Score=39.13 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 99988999998999999985189
Q gi|254781197|r 5 FVLIGASGVGETTIAKQVVLNSE 27 (185)
Q Consensus 5 ivi~GpSGsGK~tl~~~L~~~~~ 27 (185)
T Consensus 2 ivilG~~~~GKTsll~~l~~~~~ 24 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTLFS 24 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC
T ss_conf 99999999888899998875036