Query gi|254781198|ref|YP_003065611.1| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 117
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed Jun 1 11:39:54 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781198.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xoua_ a.231.1.1 (A:) Secrete 16.1 15 0.0011 16.0 0.0 29 17-45 71-99 (160)
2 d1w98b1 a.74.1.1 (B:228-357) G 16.0 24 0.0017 14.8 1.1 17 17-33 108-124 (130)
3 d1v93a_ c.1.23.1 (A:) Methylen 10.3 52 0.0038 12.8 2.1 22 96-117 248-272 (292)
4 d1k1va_ a.37.1.1 (A:) Mafg {Mo 8.0 31 0.0022 14.1 -0.5 33 7-39 9-41 (41)
5 d1eg3a1 a.39.1.7 (A:85-209) Dy 7.4 69 0.005 12.1 2.0 18 97-114 89-106 (125)
6 d2o3fa1 a.4.1.20 (A:1-83) Puta 7.2 69 0.005 12.1 1.0 35 32-70 6-40 (83)
7 d1b0nb_ a.34.1.1 (B:) SinI ant 6.3 62 0.0045 12.4 0.4 13 14-26 14-26 (31)
8 d1k82a1 a.156.1.2 (A:129-216) 5.8 84 0.0061 11.6 1.9 25 15-39 57-81 (88)
9 d1cg5b_ a.1.1.2 (B:) Hemoglobi 4.7 1E+02 0.0073 11.2 0.8 32 83-115 110-141 (141)
10 d2c35b2 d.230.1.1 (B:1-77) N-t 4.5 86 0.0063 11.6 0.2 22 19-40 13-35 (77)
No 1
>d1xoua_ a.231.1.1 (A:) Secreted protein EspA {Escherichia coli [TaxId: 562]}
Probab=16.07 E-value=15 Score=15.95 Aligned_cols=29 Identities=24% Similarity=0.390 Sum_probs=20.9
Q ss_pred CCCCHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 89986785100122025525217998776
Q gi|254781198|r 17 SNLPPEEIKNIQDHRITLLEKNYERLSDK 45 (117)
Q Consensus 17 snlppeeikniqdhritlleknyerlsdk 45 (117)
..||++-|+-+.||++...-+.-+.++.+
T Consensus 71 ~~LP~dVi~Ymrdn~~~I~v~~idd~~~~ 99 (160)
T d1xoua_ 71 AQLPDEVISYINDPRNDITISGIDNINAQ 99 (160)
T ss_dssp -----------------------------
T ss_pred CCCCHHHHHHHHHCCCCCCCCCHHHHCCC
T ss_conf 78999999999844987451347651554
No 2
>d1w98b1 a.74.1.1 (B:228-357) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.96 E-value=24 Score=14.76 Aligned_cols=17 Identities=35% Similarity=0.522 Sum_probs=9.1
Q ss_pred CCCCHHHHHCCHHHHHH
Q ss_conf 89986785100122025
Q gi|254781198|r 17 SNLPPEEIKNIQDHRIT 33 (117)
Q Consensus 17 snlppeeikniqdhrit 33 (117)
.|.|+++-.|||-|..+
T Consensus 108 ~~i~~dd~HnIQtH~~~ 124 (130)
T d1w98b1 108 RGVADEDAHNIQTHRDS 124 (130)
T ss_dssp TTSCGGGGGGBCCCCCH
T ss_pred CCCCCCCCCCCEECCCH
T ss_conf 89997667520003075
No 3
>d1v93a_ c.1.23.1 (A:) Methylenetetrahydrofolate reductase {Thermus thermophilus [TaxId: 274]}
Probab=10.31 E-value=52 Score=12.82 Aligned_cols=22 Identities=27% Similarity=0.795 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHH---CCCCCC
Q ss_conf 7769999999999863---210149
Q gi|254781198|r 96 AIGISICLRFLANVMD---KGIHLF 117 (117)
Q Consensus 96 aigisiclrflanvmd---kgihlf 117 (117)
..|+.+|.+......+ .|+|+|
T Consensus 248 ~~gi~~a~~~~~~L~~~gv~GiH~~ 272 (292)
T d1v93a_ 248 EIGVEHAVRQVAELLEAGVEGVHFY 272 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 9999999999999998799979995
No 4
>d1k1va_ a.37.1.1 (A:) Mafg {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.01 E-value=31 Score=14.11 Aligned_cols=33 Identities=33% Similarity=0.434 Sum_probs=25.0
Q ss_pred HHHHCCCCCCCCCCHHHHHCCHHHHHHHHHHHH
Q ss_conf 554304567789986785100122025525217
Q gi|254781198|r 7 RSVMDTNHKGSNLPPEEIKNIQDHRITLLEKNY 39 (117)
Q Consensus 7 rsvmdtnhkgsnlppeeikniqdhritllekny 39 (117)
-||-|-|..=-.+|.||+-.+...|-||-...|
T Consensus 9 ~svReLN~~Lrgl~keev~~lKqrRRTLKNRGY 41 (41)
T d1k1va_ 9 MSVRELNQHLRGLSKEEIIQLKQRRRTLKNRGY 41 (41)
T ss_dssp SCHHHHHHHHTTSCHHHHHHHHHHHHHHTTSCC
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 759999999718999999999999986611798
No 5
>d1eg3a1 a.39.1.7 (A:85-209) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.36 E-value=69 Score=12.11 Aligned_cols=18 Identities=39% Similarity=0.835 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHCCC
Q ss_conf 769999999999863210
Q gi|254781198|r 97 IGISICLRFLANVMDKGI 114 (117)
Q Consensus 97 igisiclrflanvmdkgi 114 (117)
.-++.||.||-|+.|.|-
T Consensus 89 ~~~dl~LN~LlnvYD~~r 106 (125)
T d1eg3a1 89 LCVDMCLNWLLNVYDTGR 106 (125)
T ss_dssp HHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHCCCC
T ss_conf 799999999999838899
No 6
>d2o3fa1 a.4.1.20 (A:1-83) Putative transcriptional regulator YbbH {Bacillus subtilis [TaxId: 1423]}
Probab=7.25 E-value=69 Score=12.11 Aligned_cols=35 Identities=17% Similarity=0.322 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHEEEEE
Q ss_conf 255252179987766676899999995074321102568
Q gi|254781198|r 32 ITLLEKNYERLSDKVEASHTKLMEAILDNREDIANVRIE 70 (117)
Q Consensus 32 itlleknyerlsdkveashtklmeaildnredianvrie 70 (117)
+.+++..|..|+. +..++-+.|++|.++++...|.
T Consensus 6 l~~i~~~~~~Ls~----~e~~ia~yil~~~~~~~~~si~ 40 (83)
T d2o3fa1 6 LAIIQSMKHKLPP----SERKLADYILAHPHKAIESTVN 40 (83)
T ss_dssp HHHHHHHGGGSCH----HHHHHHHHHHHCHHHHHTCCHH
T ss_pred HHHHHHHHHHCCH----HHHHHHHHHHCCHHHHHHCCHH
T ss_conf 9999988865789----9999999998299999883199
No 7
>d1b0nb_ a.34.1.1 (B:) SinI anti-repressor {Bacillus subtilis [TaxId: 1423]}
Probab=6.28 E-value=62 Score=12.37 Aligned_cols=13 Identities=46% Similarity=0.820 Sum_probs=9.1
Q ss_pred CCCCCCCHHHHHC
Q ss_conf 6778998678510
Q gi|254781198|r 14 HKGSNLPPEEIKN 26 (117)
Q Consensus 14 hkgsnlppeeikn 26 (117)
.|..|..||||..
T Consensus 14 akeanispeeirk 26 (31)
T d1b0nb_ 14 AKEANISPEEIRK 26 (31)
T ss_dssp HHHTTCCHHHHHH
T ss_pred HHHCCCCHHHHHH
T ss_conf 9874799999999
No 8
>d1k82a1 a.156.1.2 (A:129-216) DNA repair protein MutM (Fpg) {Escherichia coli [TaxId: 562]}
Probab=5.83 E-value=84 Score=11.64 Aligned_cols=25 Identities=16% Similarity=0.090 Sum_probs=9.4
Q ss_pred CCCCCCHHHHHCCHHHHHHHHHHHH
Q ss_conf 7789986785100122025525217
Q gi|254781198|r 15 KGSNLPPEEIKNIQDHRITLLEKNY 39 (117)
Q Consensus 15 kgsnlppeeikniqdhritllekny 39 (117)
+.+.|+.++++.+-+.-..++++.|
T Consensus 57 ~~~~L~~~~~~~L~~~i~~vl~~a~ 81 (88)
T d1k82a1 57 LASSLSLAECELLARVIKAVLLRSI 81 (88)
T ss_dssp BGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 1877899999999999999999999
No 9
>d1cg5b_ a.1.1.2 (B:) Hemoglobin, beta-chain {Cartilaginous fish akaei (Dasyatis akajei) [TaxId: 31902]}
Probab=4.67 E-value=1e+02 Score=11.19 Aligned_cols=32 Identities=13% Similarity=0.235 Sum_probs=20.4
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 898888876002577699999999998632101
Q gi|254781198|r 83 TEMLGLIWKIPATAIGISICLRFLANVMDKGIH 115 (117)
Q Consensus 83 temlgliwkipataigisiclrflanvmdkgih 115 (117)
.+.||--|. |...-.-.-++.+++++|.++-|
T Consensus 110 ~~~lg~~ft-~e~~~AW~k~~~~va~~l~~~y~ 141 (141)
T d1cg5b_ 110 ALHYKKTFR-PKEHAAAYKFFRLVAEALSSNYH 141 (141)
T ss_dssp HHHHGGGCC-HHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHCCCCCC-HHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 988583189-99999999999999999976219
No 10
>d2c35b2 d.230.1.1 (B:1-77) N-terminal, heterodimerisation domain of RBP7 (RpoE) {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.48 E-value=86 Score=11.55 Aligned_cols=22 Identities=23% Similarity=0.197 Sum_probs=0.0
Q ss_pred CCHHHH-HCCHHHHHHHHHHHHH
Q ss_conf 986785-1001220255252179
Q gi|254781198|r 19 LPPEEI-KNIQDHRITLLEKNYE 40 (117)
Q Consensus 19 lppeei-kniqdhritlleknye 40 (117)
+||+.. ++++++-...|.+.||
T Consensus 13 i~P~~~~~~~~~~i~~~L~~~~e 35 (77)
T d2c35b2 13 LHPRYFGPNLLNTVKQKLFTEVE 35 (77)
T ss_dssp ECGGGCCSCHHHHHHHHHHHHHT
T ss_pred ECHHHHCCCHHHHHHHHHHHHHC
T ss_conf 99899592289999999989869
Done!