Query gi|254781198|ref|YP_003065611.1| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 117 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Wed Jun 1 11:39:54 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781198.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1xoua_ a.231.1.1 (A:) Secrete 16.1 15 0.0011 16.0 0.0 29 17-45 71-99 (160) 2 d1w98b1 a.74.1.1 (B:228-357) G 16.0 24 0.0017 14.8 1.1 17 17-33 108-124 (130) 3 d1v93a_ c.1.23.1 (A:) Methylen 10.3 52 0.0038 12.8 2.1 22 96-117 248-272 (292) 4 d1k1va_ a.37.1.1 (A:) Mafg {Mo 8.0 31 0.0022 14.1 -0.5 33 7-39 9-41 (41) 5 d1eg3a1 a.39.1.7 (A:85-209) Dy 7.4 69 0.005 12.1 2.0 18 97-114 89-106 (125) 6 d2o3fa1 a.4.1.20 (A:1-83) Puta 7.2 69 0.005 12.1 1.0 35 32-70 6-40 (83) 7 d1b0nb_ a.34.1.1 (B:) SinI ant 6.3 62 0.0045 12.4 0.4 13 14-26 14-26 (31) 8 d1k82a1 a.156.1.2 (A:129-216) 5.8 84 0.0061 11.6 1.9 25 15-39 57-81 (88) 9 d1cg5b_ a.1.1.2 (B:) Hemoglobi 4.7 1E+02 0.0073 11.2 0.8 32 83-115 110-141 (141) 10 d2c35b2 d.230.1.1 (B:1-77) N-t 4.5 86 0.0063 11.6 0.2 22 19-40 13-35 (77) No 1 >d1xoua_ a.231.1.1 (A:) Secreted protein EspA {Escherichia coli [TaxId: 562]} Probab=16.07 E-value=15 Score=15.95 Aligned_cols=29 Identities=24% Similarity=0.390 Sum_probs=20.9 Q ss_pred CCCCHHHHHCCHHHHHHHHHHHHHHHHHH Q ss_conf 89986785100122025525217998776 Q gi|254781198|r 17 SNLPPEEIKNIQDHRITLLEKNYERLSDK 45 (117) Q Consensus 17 snlppeeikniqdhritlleknyerlsdk 45 (117) ..||++-|+-+.||++...-+.-+.++.+ T Consensus 71 ~~LP~dVi~Ymrdn~~~I~v~~idd~~~~ 99 (160) T d1xoua_ 71 AQLPDEVISYINDPRNDITISGIDNINAQ 99 (160) T ss_dssp ----------------------------- T ss_pred CCCCHHHHHHHHHCCCCCCCCCHHHHCCC T ss_conf 78999999999844987451347651554 No 2 >d1w98b1 a.74.1.1 (B:228-357) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Probab=15.96 E-value=24 Score=14.76 Aligned_cols=17 Identities=35% Similarity=0.522 Sum_probs=9.1 Q ss_pred CCCCHHHHHCCHHHHHH Q ss_conf 89986785100122025 Q gi|254781198|r 17 SNLPPEEIKNIQDHRIT 33 (117) Q Consensus 17 snlppeeikniqdhrit 33 (117) .|.|+++-.|||-|..+ T Consensus 108 ~~i~~dd~HnIQtH~~~ 124 (130) T d1w98b1 108 RGVADEDAHNIQTHRDS 124 (130) T ss_dssp TTSCGGGGGGBCCCCCH T ss_pred CCCCCCCCCCCEECCCH T ss_conf 89997667520003075 No 3 >d1v93a_ c.1.23.1 (A:) Methylenetetrahydrofolate reductase {Thermus thermophilus [TaxId: 274]} Probab=10.31 E-value=52 Score=12.82 Aligned_cols=22 Identities=27% Similarity=0.795 Sum_probs=17.4 Q ss_pred HHHHHHHHHHHHHHHH---CCCCCC Q ss_conf 7769999999999863---210149 Q gi|254781198|r 96 AIGISICLRFLANVMD---KGIHLF 117 (117) Q Consensus 96 aigisiclrflanvmd---kgihlf 117 (117) ..|+.+|.+......+ .|+|+| T Consensus 248 ~~gi~~a~~~~~~L~~~gv~GiH~~ 272 (292) T d1v93a_ 248 EIGVEHAVRQVAELLEAGVEGVHFY 272 (292) T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEE T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEE T ss_conf 9999999999999998799979995 No 4 >d1k1va_ a.37.1.1 (A:) Mafg {Mouse (Mus musculus) [TaxId: 10090]} Probab=8.01 E-value=31 Score=14.11 Aligned_cols=33 Identities=33% Similarity=0.434 Sum_probs=25.0 Q ss_pred HHHHCCCCCCCCCCHHHHHCCHHHHHHHHHHHH Q ss_conf 554304567789986785100122025525217 Q gi|254781198|r 7 RSVMDTNHKGSNLPPEEIKNIQDHRITLLEKNY 39 (117) Q Consensus 7 rsvmdtnhkgsnlppeeikniqdhritllekny 39 (117) -||-|-|..=-.+|.||+-.+...|-||-...| T Consensus 9 ~svReLN~~Lrgl~keev~~lKqrRRTLKNRGY 41 (41) T d1k1va_ 9 MSVRELNQHLRGLSKEEIIQLKQRRRTLKNRGY 41 (41) T ss_dssp SCHHHHHHHHTTSCHHHHHHHHHHHHHHTTSCC T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC T ss_conf 759999999718999999999999986611798 No 5 >d1eg3a1 a.39.1.7 (A:85-209) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} Probab=7.36 E-value=69 Score=12.11 Aligned_cols=18 Identities=39% Similarity=0.835 Sum_probs=14.7 Q ss_pred HHHHHHHHHHHHHHHCCC Q ss_conf 769999999999863210 Q gi|254781198|r 97 IGISICLRFLANVMDKGI 114 (117) Q Consensus 97 igisiclrflanvmdkgi 114 (117) .-++.||.||-|+.|.|- T Consensus 89 ~~~dl~LN~LlnvYD~~r 106 (125) T d1eg3a1 89 LCVDMCLNWLLNVYDTGR 106 (125) T ss_dssp HHHHHHHHHHHHHHCTTC T ss_pred HHHHHHHHHHHHHHCCCC T ss_conf 799999999999838899 No 6 >d2o3fa1 a.4.1.20 (A:1-83) Putative transcriptional regulator YbbH {Bacillus subtilis [TaxId: 1423]} Probab=7.25 E-value=69 Score=12.11 Aligned_cols=35 Identities=17% Similarity=0.322 Sum_probs=24.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHEEEEE Q ss_conf 255252179987766676899999995074321102568 Q gi|254781198|r 32 ITLLEKNYERLSDKVEASHTKLMEAILDNREDIANVRIE 70 (117) Q Consensus 32 itlleknyerlsdkveashtklmeaildnredianvrie 70 (117) +.+++..|..|+. +..++-+.|++|.++++...|. T Consensus 6 l~~i~~~~~~Ls~----~e~~ia~yil~~~~~~~~~si~ 40 (83) T d2o3fa1 6 LAIIQSMKHKLPP----SERKLADYILAHPHKAIESTVN 40 (83) T ss_dssp HHHHHHHGGGSCH----HHHHHHHHHHHCHHHHHTCCHH T ss_pred HHHHHHHHHHCCH----HHHHHHHHHHCCHHHHHHCCHH T ss_conf 9999988865789----9999999998299999883199 No 7 >d1b0nb_ a.34.1.1 (B:) SinI anti-repressor {Bacillus subtilis [TaxId: 1423]} Probab=6.28 E-value=62 Score=12.37 Aligned_cols=13 Identities=46% Similarity=0.820 Sum_probs=9.1 Q ss_pred CCCCCCCHHHHHC Q ss_conf 6778998678510 Q gi|254781198|r 14 HKGSNLPPEEIKN 26 (117) Q Consensus 14 hkgsnlppeeikn 26 (117) .|..|..||||.. T Consensus 14 akeanispeeirk 26 (31) T d1b0nb_ 14 AKEANISPEEIRK 26 (31) T ss_dssp HHHTTCCHHHHHH T ss_pred HHHCCCCHHHHHH T ss_conf 9874799999999 No 8 >d1k82a1 a.156.1.2 (A:129-216) DNA repair protein MutM (Fpg) {Escherichia coli [TaxId: 562]} Probab=5.83 E-value=84 Score=11.64 Aligned_cols=25 Identities=16% Similarity=0.090 Sum_probs=9.4 Q ss_pred CCCCCCHHHHHCCHHHHHHHHHHHH Q ss_conf 7789986785100122025525217 Q gi|254781198|r 15 KGSNLPPEEIKNIQDHRITLLEKNY 39 (117) Q Consensus 15 kgsnlppeeikniqdhritllekny 39 (117) +.+.|+.++++.+-+.-..++++.| T Consensus 57 ~~~~L~~~~~~~L~~~i~~vl~~a~ 81 (88) T d1k82a1 57 LASSLSLAECELLARVIKAVLLRSI 81 (88) T ss_dssp BGGGCCHHHHHHHHHHHHHHHHHHH T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHH T ss_conf 1877899999999999999999999 No 9 >d1cg5b_ a.1.1.2 (B:) Hemoglobin, beta-chain {Cartilaginous fish akaei (Dasyatis akajei) [TaxId: 31902]} Probab=4.67 E-value=1e+02 Score=11.19 Aligned_cols=32 Identities=13% Similarity=0.235 Sum_probs=20.4 Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 898888876002577699999999998632101 Q gi|254781198|r 83 TEMLGLIWKIPATAIGISICLRFLANVMDKGIH 115 (117) Q Consensus 83 temlgliwkipataigisiclrflanvmdkgih 115 (117) .+.||--|. |...-.-.-++.+++++|.++-| T Consensus 110 ~~~lg~~ft-~e~~~AW~k~~~~va~~l~~~y~ 141 (141) T d1cg5b_ 110 ALHYKKTFR-PKEHAAAYKFFRLVAEALSSNYH 141 (141) T ss_dssp HHHHGGGCC-HHHHHHHHHHHHHHHHHHHTTCC T ss_pred HHHCCCCCC-HHHHHHHHHHHHHHHHHHHHCCC T ss_conf 988583189-99999999999999999976219 No 10 >d2c35b2 d.230.1.1 (B:1-77) N-terminal, heterodimerisation domain of RBP7 (RpoE) {Human (Homo sapiens) [TaxId: 9606]} Probab=4.48 E-value=86 Score=11.55 Aligned_cols=22 Identities=23% Similarity=0.197 Sum_probs=0.0 Q ss_pred CCHHHH-HCCHHHHHHHHHHHHH Q ss_conf 986785-1001220255252179 Q gi|254781198|r 19 LPPEEI-KNIQDHRITLLEKNYE 40 (117) Q Consensus 19 lppeei-kniqdhritlleknye 40 (117) +||+.. ++++++-...|.+.|| T Consensus 13 i~P~~~~~~~~~~i~~~L~~~~e 35 (77) T d2c35b2 13 LHPRYFGPNLLNTVKQKLFTEVE 35 (77) T ss_dssp ECGGGCCSCHHHHHHHHHHHHHT T ss_pred ECHHHHCCCHHHHHHHHHHHHHC T ss_conf 99899592289999999989869 Done!