RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781198|ref|YP_003065611.1| guanylate kinase [Candidatus
Liberibacter asiaticus str. psy62]
         (117 letters)



>gnl|CDD|181982 PRK09602, PRK09602, translation-associated GTPase; Reviewed.
          Length = 396

 Score = 28.6 bits (65), Expect = 0.41
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 13/64 (20%)

Query: 16  GSNLPPEEIKNIQDHRITL-----LEKNYERLSDKVEASHTKLMEAILD-------NRED 63
           GS+ P E+IK ++   + +     LEKN+E+ S K +A    + EA+ +       N E 
Sbjct: 126 GSHDPVEDIKFLE-EELDMWIYGILEKNWEKFSRKAQAEKFDIEEALAEQLSGLGINEEH 184

Query: 64  IANV 67
           +   
Sbjct: 185 VKEA 188


>gnl|CDD|181233 PRK08116, PRK08116, hypothetical protein; Validated.
          Length = 268

 Score = 26.9 bits (60), Expect = 1.3
 Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 24/70 (34%)

Query: 17  SNLPPEEIKNIQDHRITLLEKNYERLSDKVEASHTKLMEAILDNREDIANVRIEVANVRI 76
           +NL  EE+KN    RI      Y+R+                   E    V  E  + R 
Sbjct: 218 TNLSLEELKNQYGKRI------YDRIL------------------EMCTPVENEGKSYRK 253

Query: 77  EVANVRTEML 86
           E+A  + + L
Sbjct: 254 EIAKEKLQRL 263


>gnl|CDD|150598 pfam09943, DUF2175, Uncharacterized protein conserved in archaea
          (DUF2175).  This domain, found in various hypothetical
          archaeal proteins, has no known function.
          Length = 101

 Score = 25.9 bits (57), Expect = 2.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 22 EEIKNIQDHRITLLEKNYERLSDKVE 47
          EEIK +       LEK   +L+ K+E
Sbjct: 74 EEIKKVIRQVRKDLEKLAAKLTRKIE 99


>gnl|CDD|184829 PRK14807, PRK14807, histidinol-phosphate aminotransferase;
          Provisional.
          Length = 351

 Score = 25.2 bits (55), Expect = 4.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 1  MNSMERRSVMDTNHKGSNLPPEEIKNIQD 29
          ++S+  +  MD N     LP E IKNIQ+
Sbjct: 18 VHSIPYKYKMDANETPFELPEEVIKNIQE 46


>gnl|CDD|179449 PRK02610, PRK02610, histidinol-phosphate aminotransferase;
           Provisional.
          Length = 374

 Score = 25.1 bits (55), Expect = 4.7
 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 7/89 (7%)

Query: 10  MDTNHKGSNLPPEEIKNIQDHRITLLEKNYERLSDKVEASHTKLMEAILDNREDIANVRI 69
           +DTN    +LPP+  + +       +E N  R  D     H  L +AI +   + A    
Sbjct: 33  LDTNEFPYDLPPDLKQKLAWLYQQGIESN--RYPD---GGHEALKQAIAEYVNESAAGSS 87

Query: 70  EVANVRIEVANVRTEMLGLIWKIPATAIG 98
           ++    I V N   E++  +  + AT +G
Sbjct: 88  QITPANISVGNGSDELIRSL--LIATCLG 114


>gnl|CDD|179125 PRK00784, PRK00784, cobyric acid synthase; Provisional.
          Length = 488

 Score = 25.0 bits (56), Expect = 4.7
 Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 8/43 (18%)

Query: 18  NLPPEEIKNIQDHRITLLEKNYERLSDKVEASHTKL-MEAILD 59
            L P    +    R    E   +RL+D VE     L ++A+L 
Sbjct: 451 GLAPASALDYAALR----EAQLDRLADLVEEH---LDLDALLA 486


>gnl|CDD|129060 smart00827, PKS_AT, Acyl transferase domain in polyketide synthase
           (PKS) enzymes. 
          Length = 298

 Score = 24.7 bits (55), Expect = 5.2
 Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 48  ASHTKLMEAILDN-REDIANVRIEVANVRIEVANV 81
           A H+  M+ ILD  RE +A +      +   V+ V
Sbjct: 191 AFHSPHMDPILDEFREALAGITPRPPRIPF-VSTV 224


>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional.
          Length = 943

 Score = 24.7 bits (53), Expect = 5.5
 Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 2/24 (8%)

Query: 22  EEIKNIQDHRITLLEKNYERLSDK 45
           E+I+ +QDHR   L+  +  +SDK
Sbjct: 369 EKIEELQDHRACELDVMF--ISDK 390


>gnl|CDD|161937 TIGR00577, fpg, formamidopyrimidine-DNA glycosylase (fpg).  All
           proteins in the FPG family with known functions are
           FAPY-DNA glycosylases that function in base excision
           repair. Homologous to endonuclease VIII (nei). This
           family is based on the phylogenomic analysis of JA Eisen
           (1999, Ph.D. Thesis, Stanford University).
          Length = 272

 Score = 24.6 bits (54), Expect = 6.8
 Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 10/48 (20%)

Query: 24  IKNIQDHRITLLEK----------NYERLSDKVEASHTKLMEAILDNR 61
               Q   + LL K            E L +K+  S  K+  A+LD R
Sbjct: 119 FDRGQVENVPLLAKLGPEPLSEDFTAEYLFEKLAKSKRKIKTALLDQR 166


>gnl|CDD|183863 PRK13107, PRK13107, preprotein translocase subunit SecA;
          Reviewed.
          Length = 908

 Score = 24.6 bits (53), Expect = 7.0
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 31 RITLLEKNYERLSDKVEASHTKLMEAILDNREDIANVRIEV-ANVR 75
          +I  LE +YE+L+D+   + T      L   E + ++  E  A VR
Sbjct: 27 KINALEADYEKLTDEELKAKTAEFRERLAAGETLDDIMAEAFATVR 72


>gnl|CDD|168927 PRK07374, dnaE, DNA polymerase III subunit alpha; Validated.
          Length = 1170

 Score = 24.3 bits (53), Expect = 8.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 37   KNYERLSDKVEASHTKLMEAILDNRED 63
            K+YERLSD +      L+ A +D R+D
Sbjct: 1042 KSYERLSDHLMTDTRLLVWAKVDRRDD 1068


>gnl|CDD|179098 PRK00724, PRK00724, formate dehydrogenase accessory protein;
          Reviewed.
          Length = 263

 Score = 24.0 bits (53), Expect = 9.3
 Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 4/36 (11%)

Query: 55 EAILDNREDIANVRIE----VANVRIEVANVRTEML 86
          E I+ + EDI ++ I        V++E+++ R   L
Sbjct: 62 EGIIRSPEDIESIDIVESCNGVEVQLELSSRRFAGL 97


>gnl|CDD|183469 PRK12357, PRK12357, glutaminase; Reviewed.
          Length = 326

 Score = 23.9 bits (52), Expect = 9.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 90  WKIPATAIGISICLRFLANVMDKGI 114
           W++P T   IS  + F+A  + +GI
Sbjct: 65  WEVPFTLQSISKVISFIAACLSRGI 89


>gnl|CDD|180719 PRK06835, PRK06835, DNA replication protein DnaC; Validated.
          Length = 329

 Score = 23.7 bits (52), Expect = 10.0
 Identities = 6/17 (35%), Positives = 9/17 (52%)

Query: 17  SNLPPEEIKNIQDHRIT 33
           +NL  EE+      RI+
Sbjct: 286 TNLSLEELLKTYSERIS 302


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.320    0.134    0.375 

Gapped
Lambda     K      H
   0.267   0.0760    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,856,074
Number of extensions: 105877
Number of successful extensions: 282
Number of sequences better than 10.0: 1
Number of HSP's gapped: 281
Number of HSP's successfully gapped: 43
Length of query: 117
Length of database: 5,994,473
Length adjustment: 81
Effective length of query: 36
Effective length of database: 4,244,225
Effective search space: 152792100
Effective search space used: 152792100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.0 bits)