RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254781198|ref|YP_003065611.1| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62] (117 letters) >gnl|CDD|181982 PRK09602, PRK09602, translation-associated GTPase; Reviewed. Length = 396 Score = 28.6 bits (65), Expect = 0.41 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 13/64 (20%) Query: 16 GSNLPPEEIKNIQDHRITL-----LEKNYERLSDKVEASHTKLMEAILD-------NRED 63 GS+ P E+IK ++ + + LEKN+E+ S K +A + EA+ + N E Sbjct: 126 GSHDPVEDIKFLE-EELDMWIYGILEKNWEKFSRKAQAEKFDIEEALAEQLSGLGINEEH 184 Query: 64 IANV 67 + Sbjct: 185 VKEA 188 >gnl|CDD|181233 PRK08116, PRK08116, hypothetical protein; Validated. Length = 268 Score = 26.9 bits (60), Expect = 1.3 Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 24/70 (34%) Query: 17 SNLPPEEIKNIQDHRITLLEKNYERLSDKVEASHTKLMEAILDNREDIANVRIEVANVRI 76 +NL EE+KN RI Y+R+ E V E + R Sbjct: 218 TNLSLEELKNQYGKRI------YDRIL------------------EMCTPVENEGKSYRK 253 Query: 77 EVANVRTEML 86 E+A + + L Sbjct: 254 EIAKEKLQRL 263 >gnl|CDD|150598 pfam09943, DUF2175, Uncharacterized protein conserved in archaea (DUF2175). This domain, found in various hypothetical archaeal proteins, has no known function. Length = 101 Score = 25.9 bits (57), Expect = 2.5 Identities = 10/26 (38%), Positives = 14/26 (53%) Query: 22 EEIKNIQDHRITLLEKNYERLSDKVE 47 EEIK + LEK +L+ K+E Sbjct: 74 EEIKKVIRQVRKDLEKLAAKLTRKIE 99 >gnl|CDD|184829 PRK14807, PRK14807, histidinol-phosphate aminotransferase; Provisional. Length = 351 Score = 25.2 bits (55), Expect = 4.3 Identities = 12/29 (41%), Positives = 17/29 (58%) Query: 1 MNSMERRSVMDTNHKGSNLPPEEIKNIQD 29 ++S+ + MD N LP E IKNIQ+ Sbjct: 18 VHSIPYKYKMDANETPFELPEEVIKNIQE 46 >gnl|CDD|179449 PRK02610, PRK02610, histidinol-phosphate aminotransferase; Provisional. Length = 374 Score = 25.1 bits (55), Expect = 4.7 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 7/89 (7%) Query: 10 MDTNHKGSNLPPEEIKNIQDHRITLLEKNYERLSDKVEASHTKLMEAILDNREDIANVRI 69 +DTN +LPP+ + + +E N R D H L +AI + + A Sbjct: 33 LDTNEFPYDLPPDLKQKLAWLYQQGIESN--RYPD---GGHEALKQAIAEYVNESAAGSS 87 Query: 70 EVANVRIEVANVRTEMLGLIWKIPATAIG 98 ++ I V N E++ + + AT +G Sbjct: 88 QITPANISVGNGSDELIRSL--LIATCLG 114 >gnl|CDD|179125 PRK00784, PRK00784, cobyric acid synthase; Provisional. Length = 488 Score = 25.0 bits (56), Expect = 4.7 Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 8/43 (18%) Query: 18 NLPPEEIKNIQDHRITLLEKNYERLSDKVEASHTKL-MEAILD 59 L P + R E +RL+D VE L ++A+L Sbjct: 451 GLAPASALDYAALR----EAQLDRLADLVEEH---LDLDALLA 486 >gnl|CDD|129060 smart00827, PKS_AT, Acyl transferase domain in polyketide synthase (PKS) enzymes. Length = 298 Score = 24.7 bits (55), Expect = 5.2 Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 2/35 (5%) Query: 48 ASHTKLMEAILDN-REDIANVRIEVANVRIEVANV 81 A H+ M+ ILD RE +A + + V+ V Sbjct: 191 AFHSPHMDPILDEFREALAGITPRPPRIPF-VSTV 224 >gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional. Length = 943 Score = 24.7 bits (53), Expect = 5.5 Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 2/24 (8%) Query: 22 EEIKNIQDHRITLLEKNYERLSDK 45 E+I+ +QDHR L+ + +SDK Sbjct: 369 EKIEELQDHRACELDVMF--ISDK 390 >gnl|CDD|161937 TIGR00577, fpg, formamidopyrimidine-DNA glycosylase (fpg). All proteins in the FPG family with known functions are FAPY-DNA glycosylases that function in base excision repair. Homologous to endonuclease VIII (nei). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 272 Score = 24.6 bits (54), Expect = 6.8 Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 10/48 (20%) Query: 24 IKNIQDHRITLLEK----------NYERLSDKVEASHTKLMEAILDNR 61 Q + LL K E L +K+ S K+ A+LD R Sbjct: 119 FDRGQVENVPLLAKLGPEPLSEDFTAEYLFEKLAKSKRKIKTALLDQR 166 >gnl|CDD|183863 PRK13107, PRK13107, preprotein translocase subunit SecA; Reviewed. Length = 908 Score = 24.6 bits (53), Expect = 7.0 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%) Query: 31 RITLLEKNYERLSDKVEASHTKLMEAILDNREDIANVRIEV-ANVR 75 +I LE +YE+L+D+ + T L E + ++ E A VR Sbjct: 27 KINALEADYEKLTDEELKAKTAEFRERLAAGETLDDIMAEAFATVR 72 >gnl|CDD|168927 PRK07374, dnaE, DNA polymerase III subunit alpha; Validated. Length = 1170 Score = 24.3 bits (53), Expect = 8.4 Identities = 12/27 (44%), Positives = 17/27 (62%) Query: 37 KNYERLSDKVEASHTKLMEAILDNRED 63 K+YERLSD + L+ A +D R+D Sbjct: 1042 KSYERLSDHLMTDTRLLVWAKVDRRDD 1068 >gnl|CDD|179098 PRK00724, PRK00724, formate dehydrogenase accessory protein; Reviewed. Length = 263 Score = 24.0 bits (53), Expect = 9.3 Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 4/36 (11%) Query: 55 EAILDNREDIANVRIE----VANVRIEVANVRTEML 86 E I+ + EDI ++ I V++E+++ R L Sbjct: 62 EGIIRSPEDIESIDIVESCNGVEVQLELSSRRFAGL 97 >gnl|CDD|183469 PRK12357, PRK12357, glutaminase; Reviewed. Length = 326 Score = 23.9 bits (52), Expect = 9.5 Identities = 9/25 (36%), Positives = 15/25 (60%) Query: 90 WKIPATAIGISICLRFLANVMDKGI 114 W++P T IS + F+A + +GI Sbjct: 65 WEVPFTLQSISKVISFIAACLSRGI 89 >gnl|CDD|180719 PRK06835, PRK06835, DNA replication protein DnaC; Validated. Length = 329 Score = 23.7 bits (52), Expect = 10.0 Identities = 6/17 (35%), Positives = 9/17 (52%) Query: 17 SNLPPEEIKNIQDHRIT 33 +NL EE+ RI+ Sbjct: 286 TNLSLEELLKTYSERIS 302 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.320 0.134 0.375 Gapped Lambda K H 0.267 0.0760 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 1,856,074 Number of extensions: 105877 Number of successful extensions: 282 Number of sequences better than 10.0: 1 Number of HSP's gapped: 281 Number of HSP's successfully gapped: 43 Length of query: 117 Length of database: 5,994,473 Length adjustment: 81 Effective length of query: 36 Effective length of database: 4,244,225 Effective search space: 152792100 Effective search space used: 152792100 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.0 bits)