Query         gi|254781199|ref|YP_003065612.1| hypothetical protein CLIBASIA_05530 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 157
No_of_seqs    76 out of 78
Neff          4.5 
Searched_HMMs 13730
Date          Wed Jun  1 11:44:59 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781199.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d2axtt1 f.23.34.1 (T:1-30) Pho  22.0      19  0.0014   13.5   1.7   12  138-149     8-19  (30)
  2 d2ayua1 d.305.1.1 (A:70-370) N  15.5      27   0.002   12.5   8.5   39    7-47      5-43  (301)
  3 d1xmec1 f.23.9.1 (C:2-34) Bact  14.0      30  0.0022   12.3   2.0   12  142-153    17-28  (33)
  4 d1d9ca_ a.26.1.3 (A:) Interfer   9.4      42   0.003   11.3   1.8   15   18-32     25-39  (121)
  5 d1sf9a_ b.34.15.1 (A:) Hypothe   7.2      52  0.0038   10.7   3.3   43   28-70      9-51  (118)
  6 d1nkua_ a.96.1.4 (A:) 3-Methyl   5.4      65  0.0047   10.1   1.1   12   98-109   156-167 (187)
  7 d3besl1 a.26.1.3 (L:0-126) Int   5.1      68   0.005   10.0   2.5   13   18-30     26-38  (127)
  8 d1r6ra_ a.190.1.1 (A:) Flavivi   5.0      70  0.0051    9.9   0.4   24   95-118    20-43  (80)
  9 d2riga_ a.26.1.3 (A:) Interfer   4.5      80  0.0058    9.5   2.7   28  121-148    25-54  (119)
 10 d1rz4a2 a.118.1.18 (A:2-131) E   4.4      82   0.006    9.5   2.4   25    7-31     10-34  (130)

No 1  
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=22.01  E-value=19  Score=13.52  Aligned_cols=12  Identities=33%  Similarity=0.855  Sum_probs=6.6

Q ss_pred             HHHHHHHHHHHH
Q ss_conf             999999999885
Q gi|254781199|r  138 EIIACILGFWYT  149 (157)
Q Consensus       138 ai~a~Ii~FWFg  149 (157)
                      -||||+|+..|-
T Consensus         8 ~ifac~i~lfff   19 (30)
T d2axtt1           8 FIFACIIALFFF   19 (30)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
T ss_conf             999999999999


No 2  
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=15.50  E-value=27  Score=12.54  Aligned_cols=39  Identities=13%  Similarity=0.060  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             53689999742213579999999997887989889999999
Q gi|254781199|r    7 AGGLFRFLLRFIPSGFERIVDVVSEYLTKKQSIEYDKLKLE   47 (157)
Q Consensus         7 ~~sLLgsLlGF~~S~lP~vld~f~~k~dkkheLe~~kl~~e   47 (157)
                      ++||.|.--||+.|.-|.|-.-....  ++.+.+..+++.+
T Consensus         5 l~~l~~~~~~~i~~Lp~~v~~rv~aL--k~lq~e~~~le~~   43 (301)
T d2ayua1           5 LGSLVGQDSGYVGGLPKNVKEKLLSL--KTLQSELFEVEKE   43 (301)
T ss_dssp             TTTHHHHHHHHHHHSCHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred             HHHHHCCCCCHHHHCCHHHHHHHHHH--HHHHHHHHHHHHH
T ss_conf             55563578636776999999999999--9999999999999


No 3  
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=13.97  E-value=30  Score=12.28  Aligned_cols=12  Identities=42%  Similarity=0.609  Sum_probs=7.4

Q ss_pred             HHHHHHHHHHHH
Q ss_conf             999998857786
Q gi|254781199|r  142 CILGFWYTDKIV  153 (157)
Q Consensus       142 ~Ii~FWFg~R~~  153 (157)
                      .|+-||||--++
T Consensus        17 ~ilvfw~gv~av   28 (33)
T d1xmec1          17 TILVFWLGVYAV   28 (33)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
T ss_conf             999999999998


No 4  
>d1d9ca_ a.26.1.3 (A:) Interferon-gamma {Cow (Bos taurus) [TaxId: 9913]}
Probab=9.43  E-value=42  Score=11.34  Aligned_cols=15  Identities=13%  Similarity=-0.017  Sum_probs=6.3

Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             213579999999997
Q gi|254781199|r   18 IPSGFERIVDVVSEY   32 (157)
Q Consensus        18 ~~S~lP~vld~f~~k   32 (157)
                      |.+.++++++=.++.
T Consensus        25 g~plfl~~l~nw~e~   39 (121)
T d1d9ca_          25 GGPLFSEILKNWKDE   39 (121)
T ss_dssp             TCCSSHHHHHHTTTC
T ss_pred             CCCCHHHHHHHHHHH
T ss_conf             985058878755277


No 5  
>d1sf9a_ b.34.15.1 (A:) Hypothetical protein YfhH {Bacillus subtilis [TaxId: 1423]}
Probab=7.21  E-value=52  Score=10.73  Aligned_cols=43  Identities=19%  Similarity=0.058  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999788798988999999999972112589999998999998
Q gi|254781199|r   28 VVSEYLTKKQSIEYDKLKLEMAKNDSSTQLDLAEIKAGIEELK   70 (157)
Q Consensus        28 ~f~~k~dkkheLe~~kl~~e~~~~~~~aq~~~~e~~~~~~e~~   70 (157)
                      +|+...+.|+==+|.+-++++..+.+.-+++.+|-.+..-|..
T Consensus         9 ~~~~~~m~krySeMs~~EL~~EIa~L~EKaRKAEq~GivnE~a   51 (118)
T d1sf9a_           9 YFQSNAMEKRYSQMTPHELNTEIALLSEKARKAEQHGIINELA   51 (118)
T ss_dssp             HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             EEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf             3312255677776699999999999999999999806726999


No 6  
>d1nkua_ a.96.1.4 (A:) 3-Methyladenine DNA glycosylase I (Tag) {Escherichia coli [TaxId: 562]}
Probab=5.41  E-value=65  Score=10.11  Aligned_cols=12  Identities=0%  Similarity=0.232  Sum_probs=8.2

Q ss_pred             HHHHHHHHHHHH
Q ss_conf             545899999999
Q gi|254781199|r   98 LIRPLTTFFWII  109 (157)
Q Consensus        98 sVRPvity~f~~  109 (157)
                      .|-|++.|.|+-
T Consensus       156 FvGpt~~ysfmq  167 (187)
T d1nkua_         156 FVGTTICYSFMQ  167 (187)
T ss_dssp             CCCHHHHHHHHH
T ss_pred             ECCHHHHHHHHH
T ss_conf             627179999999


No 7  
>d3besl1 a.26.1.3 (L:0-126) Interferon-gamma {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.13  E-value=68  Score=9.98  Aligned_cols=13  Identities=15%  Similarity=-0.061  Sum_probs=5.5

Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             2135799999999
Q gi|254781199|r   18 IPSGFERIVDVVS   30 (157)
Q Consensus        18 ~~S~lP~vld~f~   30 (157)
                      |.+.++++|+=.+
T Consensus        26 ggplFl~iLknw~   38 (127)
T d3besl1          26 NGTLFLGILKNWK   38 (127)
T ss_dssp             SSCSSHHHHHHCC
T ss_pred             CCCCHHHHHHHHH
T ss_conf             9851899887677


No 8  
>d1r6ra_ a.190.1.1 (A:) Flavivirus capsid protein C {Dengue virus type 2 [TaxId: 11060]}
Probab=5.02  E-value=70  Score=9.91  Aligned_cols=24  Identities=0%  Similarity=-0.089  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             886545899999999999999999
Q gi|254781199|r   95 FTALIRPLTTFFWIIVYPLLVWWS  118 (157)
Q Consensus        95 l~~sVRPvity~f~~~f~~v~~~~  118 (157)
                      =++-+|-|+.|..|+-|.+++...
T Consensus        20 g~Gp~R~vlA~l~f~rFta~kpT~   43 (80)
T d1r6ra_          20 GRGPLKLFMALVAFLRFLTIPPTA   43 (80)
T ss_dssp             CCSCCHHHHHHHHHHHHHTCCCCH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCCH
T ss_conf             886389999999999997358988


No 9  
>d2riga_ a.26.1.3 (A:) Interferon-gamma {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=4.51  E-value=80  Score=9.54  Aligned_cols=28  Identities=18%  Similarity=0.217  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHCCHH--HHHHHHHHHHHHH
Q ss_conf             124688999970988--8999999999988
Q gi|254781199|r  121 EGMFNSDPLTLLSPF--TQEIIACILGFWY  148 (157)
Q Consensus       121 ~~~~~~a~~~lws~~--~qai~a~Ii~FWF  148 (157)
                      |+..-..++.=|.+|  ...|.+-|++|||
T Consensus        25 ggplFl~ilknw~EesekkIi~SQIvs~Y~   54 (119)
T d2riga_          25 GGPLFLNILRNWKEESDNKIIQSQIVSFYF   54 (119)
T ss_pred             CCCCHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf             984179998867772012439999999999


No 10 
>d1rz4a2 a.118.1.18 (A:2-131) Eukaryotic translation initiation factor 3 subunit 12, eIF3k, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.43  E-value=82  Score=9.48  Aligned_cols=25  Identities=20%  Similarity=0.373  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             5368999974221357999999999
Q gi|254781199|r    7 AGGLFRFLLRFIPSGFERIVDVVSE   31 (157)
Q Consensus         7 ~~sLLgsLlGF~~S~lP~vld~f~~   31 (157)
                      ..++|.++.++.++-+|..-++.+.
T Consensus        10 i~~lL~gidRYNPe~l~~Le~YV~~   34 (130)
T d1rz4a2          10 VGKLLKGIDRYNPENLATLERYVET   34 (130)
T ss_dssp             HHHHHHSGGGGCGGGHHHHHHHHHH
T ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf             9999817444787888999999999


Done!