Query gi|254781199|ref|YP_003065612.1| hypothetical protein CLIBASIA_05530 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 157 No_of_seqs 76 out of 78 Neff 4.5 Searched_HMMs 13730 Date Wed Jun 1 11:44:59 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781199.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2axtt1 f.23.34.1 (T:1-30) Pho 22.0 19 0.0014 13.5 1.7 12 138-149 8-19 (30) 2 d2ayua1 d.305.1.1 (A:70-370) N 15.5 27 0.002 12.5 8.5 39 7-47 5-43 (301) 3 d1xmec1 f.23.9.1 (C:2-34) Bact 14.0 30 0.0022 12.3 2.0 12 142-153 17-28 (33) 4 d1d9ca_ a.26.1.3 (A:) Interfer 9.4 42 0.003 11.3 1.8 15 18-32 25-39 (121) 5 d1sf9a_ b.34.15.1 (A:) Hypothe 7.2 52 0.0038 10.7 3.3 43 28-70 9-51 (118) 6 d1nkua_ a.96.1.4 (A:) 3-Methyl 5.4 65 0.0047 10.1 1.1 12 98-109 156-167 (187) 7 d3besl1 a.26.1.3 (L:0-126) Int 5.1 68 0.005 10.0 2.5 13 18-30 26-38 (127) 8 d1r6ra_ a.190.1.1 (A:) Flavivi 5.0 70 0.0051 9.9 0.4 24 95-118 20-43 (80) 9 d2riga_ a.26.1.3 (A:) Interfer 4.5 80 0.0058 9.5 2.7 28 121-148 25-54 (119) 10 d1rz4a2 a.118.1.18 (A:2-131) E 4.4 82 0.006 9.5 2.4 25 7-31 10-34 (130) No 1 >d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]} Probab=22.01 E-value=19 Score=13.52 Aligned_cols=12 Identities=33% Similarity=0.855 Sum_probs=6.6 Q ss_pred HHHHHHHHHHHH Q ss_conf 999999999885 Q gi|254781199|r 138 EIIACILGFWYT 149 (157) Q Consensus 138 ai~a~Ii~FWFg 149 (157) -||||+|+..|- T Consensus 8 ~ifac~i~lfff 19 (30) T d2axtt1 8 FIFACIIALFFF 19 (30) T ss_dssp HHHHHHHHHHHH T ss_pred HHHHHHHHHHHH T ss_conf 999999999999 No 2 >d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=15.50 E-value=27 Score=12.54 Aligned_cols=39 Identities=13% Similarity=0.060 Sum_probs=24.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 53689999742213579999999997887989889999999 Q gi|254781199|r 7 AGGLFRFLLRFIPSGFERIVDVVSEYLTKKQSIEYDKLKLE 47 (157) Q Consensus 7 ~~sLLgsLlGF~~S~lP~vld~f~~k~dkkheLe~~kl~~e 47 (157) ++||.|.--||+.|.-|.|-.-.... ++.+.+..+++.+ T Consensus 5 l~~l~~~~~~~i~~Lp~~v~~rv~aL--k~lq~e~~~le~~ 43 (301) T d2ayua1 5 LGSLVGQDSGYVGGLPKNVKEKLLSL--KTLQSELFEVEKE 43 (301) T ss_dssp TTTHHHHHHHHHHHSCHHHHHHHHHH--HHHHHHHHHHHHH T ss_pred HHHHHCCCCCHHHHCCHHHHHHHHHH--HHHHHHHHHHHHH T ss_conf 55563578636776999999999999--9999999999999 No 3 >d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]} Probab=13.97 E-value=30 Score=12.28 Aligned_cols=12 Identities=42% Similarity=0.609 Sum_probs=7.4 Q ss_pred HHHHHHHHHHHH Q ss_conf 999998857786 Q gi|254781199|r 142 CILGFWYTDKIV 153 (157) Q Consensus 142 ~Ii~FWFg~R~~ 153 (157) .|+-||||--++ T Consensus 17 ~ilvfw~gv~av 28 (33) T d1xmec1 17 TILVFWLGVYAV 28 (33) T ss_dssp HHHHHHHHHHHH T ss_pred HHHHHHHHHHHH T ss_conf 999999999998 No 4 >d1d9ca_ a.26.1.3 (A:) Interferon-gamma {Cow (Bos taurus) [TaxId: 9913]} Probab=9.43 E-value=42 Score=11.34 Aligned_cols=15 Identities=13% Similarity=-0.017 Sum_probs=6.3 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 213579999999997 Q gi|254781199|r 18 IPSGFERIVDVVSEY 32 (157) Q Consensus 18 ~~S~lP~vld~f~~k 32 (157) |.+.++++++=.++. T Consensus 25 g~plfl~~l~nw~e~ 39 (121) T d1d9ca_ 25 GGPLFSEILKNWKDE 39 (121) T ss_dssp TCCSSHHHHHHTTTC T ss_pred CCCCHHHHHHHHHHH T ss_conf 985058878755277 No 5 >d1sf9a_ b.34.15.1 (A:) Hypothetical protein YfhH {Bacillus subtilis [TaxId: 1423]} Probab=7.21 E-value=52 Score=10.73 Aligned_cols=43 Identities=19% Similarity=0.058 Sum_probs=28.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999788798988999999999972112589999998999998 Q gi|254781199|r 28 VVSEYLTKKQSIEYDKLKLEMAKNDSSTQLDLAEIKAGIEELK 70 (157) Q Consensus 28 ~f~~k~dkkheLe~~kl~~e~~~~~~~aq~~~~e~~~~~~e~~ 70 (157) +|+...+.|+==+|.+-++++..+.+.-+++.+|-.+..-|.. T Consensus 9 ~~~~~~m~krySeMs~~EL~~EIa~L~EKaRKAEq~GivnE~a 51 (118) T d1sf9a_ 9 YFQSNAMEKRYSQMTPHELNTEIALLSEKARKAEQHGIINELA 51 (118) T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTTCHHHHH T ss_pred EEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHH T ss_conf 3312255677776699999999999999999999806726999 No 6 >d1nkua_ a.96.1.4 (A:) 3-Methyladenine DNA glycosylase I (Tag) {Escherichia coli [TaxId: 562]} Probab=5.41 E-value=65 Score=10.11 Aligned_cols=12 Identities=0% Similarity=0.232 Sum_probs=8.2 Q ss_pred HHHHHHHHHHHH Q ss_conf 545899999999 Q gi|254781199|r 98 LIRPLTTFFWII 109 (157) Q Consensus 98 sVRPvity~f~~ 109 (157) .|-|++.|.|+- T Consensus 156 FvGpt~~ysfmq 167 (187) T d1nkua_ 156 FVGTTICYSFMQ 167 (187) T ss_dssp CCCHHHHHHHHH T ss_pred ECCHHHHHHHHH T ss_conf 627179999999 No 7 >d3besl1 a.26.1.3 (L:0-126) Interferon-gamma {Human (Homo sapiens) [TaxId: 9606]} Probab=5.13 E-value=68 Score=9.98 Aligned_cols=13 Identities=15% Similarity=-0.061 Sum_probs=5.5 Q ss_pred HHHHHHHHHHHHH Q ss_conf 2135799999999 Q gi|254781199|r 18 IPSGFERIVDVVS 30 (157) Q Consensus 18 ~~S~lP~vld~f~ 30 (157) |.+.++++|+=.+ T Consensus 26 ggplFl~iLknw~ 38 (127) T d3besl1 26 NGTLFLGILKNWK 38 (127) T ss_dssp SSCSSHHHHHHCC T ss_pred CCCCHHHHHHHHH T ss_conf 9851899887677 No 8 >d1r6ra_ a.190.1.1 (A:) Flavivirus capsid protein C {Dengue virus type 2 [TaxId: 11060]} Probab=5.02 E-value=70 Score=9.91 Aligned_cols=24 Identities=0% Similarity=-0.089 Sum_probs=18.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 886545899999999999999999 Q gi|254781199|r 95 FTALIRPLTTFFWIIVYPLLVWWS 118 (157) Q Consensus 95 l~~sVRPvity~f~~~f~~v~~~~ 118 (157) =++-+|-|+.|..|+-|.+++... T Consensus 20 g~Gp~R~vlA~l~f~rFta~kpT~ 43 (80) T d1r6ra_ 20 GRGPLKLFMALVAFLRFLTIPPTA 43 (80) T ss_dssp CCSCCHHHHHHHHHHHHHTCCCCH T ss_pred CCCCHHHHHHHHHHHHHHCCCCCH T ss_conf 886389999999999997358988 No 9 >d2riga_ a.26.1.3 (A:) Interferon-gamma {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Probab=4.51 E-value=80 Score=9.54 Aligned_cols=28 Identities=18% Similarity=0.217 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHCCHH--HHHHHHHHHHHHH Q ss_conf 124688999970988--8999999999988 Q gi|254781199|r 121 EGMFNSDPLTLLSPF--TQEIIACILGFWY 148 (157) Q Consensus 121 ~~~~~~a~~~lws~~--~qai~a~Ii~FWF 148 (157) |+..-..++.=|.+| ...|.+-|++||| T Consensus 25 ggplFl~ilknw~EesekkIi~SQIvs~Y~ 54 (119) T d2riga_ 25 GGPLFLNILRNWKEESDNKIIQSQIVSFYF 54 (119) T ss_pred CCCCHHHHHHHHHHHCCHHHHHHHHHHHHH T ss_conf 984179998867772012439999999999 No 10 >d1rz4a2 a.118.1.18 (A:2-131) Eukaryotic translation initiation factor 3 subunit 12, eIF3k, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Probab=4.43 E-value=82 Score=9.48 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 5368999974221357999999999 Q gi|254781199|r 7 AGGLFRFLLRFIPSGFERIVDVVSE 31 (157) Q Consensus 7 ~~sLLgsLlGF~~S~lP~vld~f~~ 31 (157) ..++|.++.++.++-+|..-++.+. T Consensus 10 i~~lL~gidRYNPe~l~~Le~YV~~ 34 (130) T d1rz4a2 10 VGKLLKGIDRYNPENLATLERYVET 34 (130) T ss_dssp HHHHHHSGGGGCGGGHHHHHHHHHH T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHH T ss_conf 9999817444787888999999999 Done!