BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254781199|ref|YP_003065612.1| hypothetical protein
CLIBASIA_05530 [Candidatus Liberibacter asiaticus str. psy62]
         (157 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254781199|ref|YP_003065612.1| hypothetical protein CLIBASIA_05530 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040876|gb|ACT57672.1| hypothetical protein CLIBASIA_05530 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|317120664|gb|ADV02487.1| hypothetical protein SC1_gp005 [Liberibacter phage SC1]
 gi|317120808|gb|ADV02629.1| hypothetical protein SC1_gp005 [Candidatus Liberibacter asiaticus]
          Length = 157

 Score =  315 bits (807), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 157/157 (100%), Positives = 157/157 (100%)

Query: 1   MIQSFLAGGLFRFLLRFIPSGFERIVDVVSEYLTKKQSIEYDKLKLEMAKNDSSTQLDLA 60
           MIQSFLAGGLFRFLLRFIPSGFERIVDVVSEYLTKKQSIEYDKLKLEMAKNDSSTQLDLA
Sbjct: 1   MIQSFLAGGLFRFLLRFIPSGFERIVDVVSEYLTKKQSIEYDKLKLEMAKNDSSTQLDLA 60

Query: 61  EIKAGIEELKIDKPIRLARIEAQKVKSGVKWVDGFTALIRPLTTFFWIIVYPLLVWWSVK 120
           EIKAGIEELKIDKPIRLARIEAQKVKSGVKWVDGFTALIRPLTTFFWIIVYPLLVWWSVK
Sbjct: 61  EIKAGIEELKIDKPIRLARIEAQKVKSGVKWVDGFTALIRPLTTFFWIIVYPLLVWWSVK 120

Query: 121 EGMFNSDPLTLLSPFTQEIIACILGFWYTDKIVQKKK 157
           EGMFNSDPLTLLSPFTQEIIACILGFWYTDKIVQKKK
Sbjct: 121 EGMFNSDPLTLLSPFTQEIIACILGFWYTDKIVQKKK 157


>gi|317120748|gb|ADV02570.1| hypothetical protein SC2_gp250 [Liberibacter phage SC2]
 gi|317120762|gb|ADV02583.1| hypothetical protein SC2_gp250 [Candidatus Liberibacter asiaticus]
          Length = 157

 Score =  265 bits (676), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 127/157 (80%), Positives = 142/157 (90%)

Query: 1   MIQSFLAGGLFRFLLRFIPSGFERIVDVVSEYLTKKQSIEYDKLKLEMAKNDSSTQLDLA 60
           MIQSFLAGGLFRFLLRFIPS FERIVDVVSEYLTKKQSIEYDK KLE AK DSS QLDLA
Sbjct: 1   MIQSFLAGGLFRFLLRFIPSSFERIVDVVSEYLTKKQSIEYDKWKLETAKIDSSLQLDLA 60

Query: 61  EIKAGIEELKIDKPIRLARIEAQKVKSGVKWVDGFTALIRPLTTFFWIIVYPLLVWWSVK 120
           +IK GIEELK DKPI+LARI+AQ +KSGVKW+D F  L+RPLTT FWIIVYP++VWWSVK
Sbjct: 61  DIKYGIEELKADKPIKLARIKAQNIKSGVKWIDSFNTLVRPLTTLFWIIVYPMMVWWSVK 120

Query: 121 EGMFNSDPLTLLSPFTQEIIACILGFWYTDKIVQKKK 157
           EG+F+  PL++LSPF QEIIACILGFW+TDKIVQK++
Sbjct: 121 EGIFDKSPLSILSPFEQEIIACILGFWFTDKIVQKRR 157


>gi|317120705|gb|ADV02527.1| hypothetical protein SC2_gp005 [Liberibacter phage SC2]
 gi|317120766|gb|ADV02587.1| hypothetical protein SC2_gp005 [Candidatus Liberibacter asiaticus]
          Length = 158

 Score =  263 bits (673), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 125/156 (80%), Positives = 144/156 (92%)

Query: 1   MIQSFLAGGLFRFLLRFIPSGFERIVDVVSEYLTKKQSIEYDKLKLEMAKNDSSTQLDLA 60
           MIQSFLAGGLFRFLLRFIPS FERIVDVVSEYLTKKQS+EY+K+++E+AK ++STQ++L 
Sbjct: 1   MIQSFLAGGLFRFLLRFIPSSFERIVDVVSEYLTKKQSLEYNKMQIELAKINTSTQVNLE 60

Query: 61  EIKAGIEELKIDKPIRLARIEAQKVKSGVKWVDGFTALIRPLTTFFWIIVYPLLVWWSVK 120
           EIK GIEELK DKPIRLAR+++Q VK  +KW++GF ALIRPLTT FWI+VYPLLVWWSVK
Sbjct: 61  EIKYGIEELKADKPIRLARVKSQNVKIDIKWINGFNALIRPLTTLFWIVVYPLLVWWSVK 120

Query: 121 EGMFNSDPLTLLSPFTQEIIACILGFWYTDKIVQKK 156
           E MF+ DPLTLLSPFTQEIIACILGFWYTDKIVQK+
Sbjct: 121 ERMFSIDPLTLLSPFTQEIIACILGFWYTDKIVQKR 156


>gi|315122886|ref|YP_004063375.1| hypothetical protein CKC_05710 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313496288|gb|ADR52887.1| hypothetical protein CKC_05710 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 158

 Score =  256 bits (654), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 123/157 (78%), Positives = 139/157 (88%)

Query: 1   MIQSFLAGGLFRFLLRFIPSGFERIVDVVSEYLTKKQSIEYDKLKLEMAKNDSSTQLDLA 60
           MIQSFLAGGLFRF LRF+PS FE+I D V EYL +KQSIEYDK+KLE  + +SSTQLDLA
Sbjct: 1   MIQSFLAGGLFRFALRFVPSVFEKIADGVLEYLMQKQSIEYDKMKLEQTRINSSTQLDLA 60

Query: 61  EIKAGIEELKIDKPIRLARIEAQKVKSGVKWVDGFTALIRPLTTFFWIIVYPLLVWWSVK 120
           +IK  IEELK+D+PIRLARI+AQKVKSGVKW+DG   LIRPLTT FWIIVYPLLVWWSVK
Sbjct: 61  DIKYAIEELKVDQPIRLARIKAQKVKSGVKWIDGLNTLIRPLTTLFWIIVYPLLVWWSVK 120

Query: 121 EGMFNSDPLTLLSPFTQEIIACILGFWYTDKIVQKKK 157
           EG+F+  PL++LSPF QEIIACILGFWYTDKIVQKK+
Sbjct: 121 EGIFDRSPLSILSPFEQEIIACILGFWYTDKIVQKKR 157


>gi|315121924|ref|YP_004062413.1| hypothetical protein CKC_00870 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495326|gb|ADR51925.1| hypothetical protein CKC_00870 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 158

 Score =  254 bits (649), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 123/157 (78%), Positives = 138/157 (87%)

Query: 1   MIQSFLAGGLFRFLLRFIPSGFERIVDVVSEYLTKKQSIEYDKLKLEMAKNDSSTQLDLA 60
           MIQSFLAGG+FRF LRF+PS FE+I D V EYL +KQSIEYDK+KLE  K +SSTQLDLA
Sbjct: 1   MIQSFLAGGIFRFALRFVPSVFEKIADGVLEYLMQKQSIEYDKMKLEQTKINSSTQLDLA 60

Query: 61  EIKAGIEELKIDKPIRLARIEAQKVKSGVKWVDGFTALIRPLTTFFWIIVYPLLVWWSVK 120
           EIK GIEELK+DKPIRLARI+AQKVKSG+KW+DG  ALIRPLTT FWIIVYPLLVWWSVK
Sbjct: 61  EIKYGIEELKVDKPIRLARIKAQKVKSGIKWIDGVNALIRPLTTLFWIIVYPLLVWWSVK 120

Query: 121 EGMFNSDPLTLLSPFTQEIIACILGFWYTDKIVQKKK 157
           EG F+  PL +L+ F QEIIACILGFWYTDKIVQK++
Sbjct: 121 EGYFDKSPLAVLTLFEQEIIACILGFWYTDKIVQKRR 157


>gi|315122344|ref|YP_004062833.1| hypothetical protein CKC_02980 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495746|gb|ADR52345.1| hypothetical protein CKC_02980 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 125

 Score =  191 bits (484), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 94/125 (75%), Positives = 110/125 (88%), Gaps = 4/125 (3%)

Query: 35  KKQSIEYDKLKLEMAKNDSSTQLDLAEIKAGIEELKIDKPIRLARIEAQKVKSGVKWVDG 94
           +KQSIEYDK KLE+A+   STQLDLA+IK  IEELK+D+PIRLARI+AQK KSG+KW+DG
Sbjct: 2   QKQSIEYDKTKLELARG--STQLDLADIKYAIEELKVDQPIRLARIKAQKFKSGIKWIDG 59

Query: 95  FTALIRPLTTFFWIIVYPLLVWW--SVKEGMFNSDPLTLLSPFTQEIIACILGFWYTDKI 152
           F ALIRPLTTFFWII+YPLLVW    VKEG+F+  PL++LSPF Q+IIACILGFWYTDKI
Sbjct: 60  FNALIRPLTTFFWIIIYPLLVWGIVCVKEGVFDRSPLSILSPFEQDIIACILGFWYTDKI 119

Query: 153 VQKKK 157
           VQKK+
Sbjct: 120 VQKKR 124


>gi|315122770|ref|YP_004063259.1| hypothetical protein CKC_05125 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313496172|gb|ADR52771.1| hypothetical protein CKC_05125 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 124

 Score =  185 bits (469), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 90/122 (73%), Positives = 105/122 (86%)

Query: 1   MIQSFLAGGLFRFLLRFIPSGFERIVDVVSEYLTKKQSIEYDKLKLEMAKNDSSTQLDLA 60
           MIQSFL G +FRF LRFIPS FE+I D V EYL +KQSIEYDK+KLE+A+ +SSTQLDLA
Sbjct: 1   MIQSFLVGEVFRFALRFIPSVFEKIADGVLEYLMQKQSIEYDKMKLELARINSSTQLDLA 60

Query: 61  EIKAGIEELKIDKPIRLARIEAQKVKSGVKWVDGFTALIRPLTTFFWIIVYPLLVWWSVK 120
           +IK  IEELK D+ IRLARI+AQKVKSG++W+DGF A +RPLT+ FWIIVYPLLVWWSVK
Sbjct: 61  DIKLEIEELKADQLIRLARIKAQKVKSGIQWIDGFNAFVRPLTSLFWIIVYPLLVWWSVK 120

Query: 121 EG 122
            G
Sbjct: 121 GG 122


>gi|315122566|ref|YP_004063055.1| hypothetical protein CKC_04090 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495968|gb|ADR52567.1| hypothetical protein CKC_04090 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 130

 Score =  182 bits (463), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 91/129 (70%), Positives = 111/129 (86%), Gaps = 7/129 (5%)

Query: 35  KKQSIEYDKLKLEMAKNDSSTQLDLAEIKAGIEELKIDKPIRLARIEAQKVKSGVKWVDG 94
           +K+SIEY+K+KLE  +  SSTQLDLA+IK GIEELK+D+PIRLARI+AQ+VKSG++W+D 
Sbjct: 2   QKRSIEYEKMKLEQTRIQSSTQLDLADIKLGIEELKVDQPIRLARIKAQQVKSGIQWIDA 61

Query: 95  F----TALIRPLTTFFWIIVYPLLVWWS--VKEGMFNSDPLTLLSPFTQEIIACILGFWY 148
           F     ALIRPLTT FWII +PLLVWWS  VKEG+F+  PL++LSPF Q+IIACILGFWY
Sbjct: 62  FNALINALIRPLTTLFWII-FPLLVWWSMGVKEGIFDRSPLSILSPFEQDIIACILGFWY 120

Query: 149 TDKIVQKKK 157
           TDKIVQKK+
Sbjct: 121 TDKIVQKKR 129


>gi|254780988|ref|YP_003065401.1| hypothetical protein CLIBASIA_04445 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040665|gb|ACT57461.1| hypothetical protein CLIBASIA_04445 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 151

 Score =  160 bits (406), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 79/158 (50%), Positives = 114/158 (72%), Gaps = 15/158 (9%)

Query: 4   SFLAGGLFRFLLRFIPSGFERIVDVVSEYLTKKQSIEYDKLKLEMAKNDSSTQLDLAEIK 63
           SFL G + RF ++F+PS F    +++ EY+ K++SIE+D+L+LE+AK  S+TQ+DL  ++
Sbjct: 3   SFLTGSIARFFIKFVPSLF----NLLEEYIMKEKSIEHDRLRLEIAKIQSTTQVDLKALE 58

Query: 64  AGIEELKIDKPIRLARIEAQ----KVKSGVKWVDGFTALIRPLTTFFWIIVYPLLVWWSV 119
           +       + P+RLAR++ Q    + +   K +  F ALIRP TT FWII+YPLL+WW V
Sbjct: 59  S-------ETPVRLARLQNQANEDQFERESKAMIFFNALIRPFTTLFWIILYPLLIWWGV 111

Query: 120 KEGMFNSDPLTLLSPFTQEIIACILGFWYTDKIVQKKK 157
           ++G    DPLTLL+PFTQ+IIACILGFW+TD IVQ++K
Sbjct: 112 EKGYLTKDPLTLLAPFTQDIIACILGFWFTDTIVQRRK 149


>gi|315121790|ref|YP_004062279.1| hypothetical protein CKC_00200 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495192|gb|ADR51791.1| hypothetical protein CKC_00200 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 121

 Score =  137 bits (346), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 71/108 (65%), Positives = 84/108 (77%), Gaps = 2/108 (1%)

Query: 1   MIQSFLAGGLFRFLLRFIPSGFERIVDVVSEYLTKKQSIEYDKLKLEMAKNDSSTQLDLA 60
           M++SFLA GLFR  LRFIPS FE+I D V EYL +KQSIEYDK KLE+A+ + STQLDLA
Sbjct: 1   MMESFLASGLFRLALRFIPSVFEKIADGVLEYLMQKQSIEYDKTKLELARINGSTQLDLA 60

Query: 61  EIKAGIEELKIDKPIRLARIEAQKVK--SGVKWVDGFTALIRPLTTFF 106
           +IK  IEELK+D+ IRLARI+AQKVK  SGVKW+DGF +L       F
Sbjct: 61  DIKYAIEELKVDQSIRLARIKAQKVKSGSGVKWIDGFDSLNSTSHNLF 108


>gi|315122303|ref|YP_004062792.1| hypothetical protein CKC_02775 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495705|gb|ADR52304.1| hypothetical protein CKC_02775 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 115

 Score =  136 bits (342), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 70/102 (68%), Positives = 84/102 (82%), Gaps = 5/102 (4%)

Query: 19  PSGFERIVDVVSEYLTKKQSIEYDKLKLEMAKNDSSTQLDLAEIKAGIEELKIDKPIRLA 78
           PS FE+I D V EYL +KQSIEYDK+ LE+ + +SSTQLDLA+IK  IEELK+D+ IRLA
Sbjct: 14  PSVFEKIADGVLEYLMQKQSIEYDKMNLELPRINSSTQLDLADIKYAIEELKVDQSIRLA 73

Query: 79  RIEAQKVK--SGVKWVDGFTALIRPLTTFFWIIVYPLLVWWS 118
           RI+AQKVK  SGVKW+DGF ALIRPLTTFFWII++    +WS
Sbjct: 74  RIKAQKVKNGSGVKWIDGFNALIRPLTTFFWIIIFR---YWS 112


>gi|315122634|ref|YP_004063123.1| hypothetical protein CKC_04430 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313496036|gb|ADR52635.1| hypothetical protein CKC_04430 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 228

 Score =  114 bits (286), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 57/80 (71%), Positives = 69/80 (86%), Gaps = 2/80 (2%)

Query: 29  VSEYLTKKQSIEYDKLKLEMAKNDSSTQLDLAEIKAGIEELKIDKPIRLARIEAQKVK-- 86
           +SE+L +K+ IEYDK KLE  +  S+TQLDLA+IK GIEELK+D+PIRLARI+AQKVK  
Sbjct: 131 ISEHLMQKRFIEYDKTKLEQTRIQSTTQLDLADIKLGIEELKVDQPIRLARIKAQKVKSS 190

Query: 87  SGVKWVDGFTALIRPLTTFF 106
           SGVKW+DGF +LIRPLTTFF
Sbjct: 191 SGVKWIDGFNSLIRPLTTFF 210


>gi|315122322|ref|YP_004062811.1| hypothetical protein CKC_02870 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495724|gb|ADR52323.1| hypothetical protein CKC_02870 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 55

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 41/47 (87%), Positives = 46/47 (97%)

Query: 65  GIEELKIDKPIRLARIEAQKVKSGVKWVDGFTALIRPLTTFFWIIVY 111
           GIEELK+D+PIRLARI+AQKVKSGVKW+DGF ALIRPLTTFFWIIV+
Sbjct: 2   GIEELKVDQPIRLARIKAQKVKSGVKWIDGFNALIRPLTTFFWIIVF 48


>gi|315122323|ref|YP_004062812.1| hypothetical protein CKC_02875 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495725|gb|ADR52324.1| hypothetical protein CKC_02875 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 40

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/39 (69%), Positives = 34/39 (87%)

Query: 119 VKEGMFNSDPLTLLSPFTQEIIACILGFWYTDKIVQKKK 157
           +K G+F+  PL++LSPF Q+IIACILGFW TDKIVQKK+
Sbjct: 1   MKGGIFDRSPLSILSPFEQDIIACILGFWCTDKIVQKKR 39


>gi|17547913|ref|NP_521315.1| hypothetical protein RSc3194 [Ralstonia solanacearum GMI1000]
 gi|17430219|emb|CAD16982.1| hypothetical transmembrane protein [Ralstonia solanacearum GMI1000]
          Length = 160

 Score = 50.8 bits (120), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 72/156 (46%), Gaps = 20/156 (12%)

Query: 6   LAGGLFRFLLRFIPSGFERIVDVVSEYLTKKQSIEYDKLKLEMAKNDSSTQLDLAEIKAG 65
           LA GL ++L R    G E  +        + +++E++KL+      +     D A     
Sbjct: 16  LAPGLLKWLDRKGERGHELAM--------QDKALEFEKLRGAQRMAEIGASADAAWNTGA 67

Query: 66  IEELKIDKPIRLARIEAQKVKSGVKWVDGFTALIRPLTTFFWIIVYPLL----VWWSVKE 121
           IE L+         I AQ  K+GV+W D  +  +RP+ T+ ++++Y  +       S + 
Sbjct: 68  IEALRDS-------ITAQGEKTGVRWADALSTTVRPVVTYLFVLMYTGVKLSTFGGSAQA 120

Query: 122 GM-FNSDPLTLLSPFTQEIIACILGFWYTDKIVQKK 156
           G+ F    L   S   Q ++A IL FW+  ++ +++
Sbjct: 121 GVGFGPALLAAWSEADQALLAGILNFWFISRVWERR 156


>gi|315122321|ref|YP_004062810.1| hypothetical protein CKC_02865 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
 gi|313495723|gb|ADR52322.1| hypothetical protein CKC_02865 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
          Length = 45

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/50 (52%), Positives = 32/50 (64%), Gaps = 5/50 (10%)

Query: 6  LAGGLFRFLLRFIPSGFERIVDVVSEYLTKKQSIEYDKLKLEMAKNDSST 55
          + GGLF   LRF PS    + D V EYL +KQSIEYDK+K E  +  S+T
Sbjct: 1  MQGGLFS-ALRFFPS----VFDGVLEYLMQKQSIEYDKMKPEQTRIQSAT 45


>gi|53803115|ref|YP_115083.1| hypothetical protein MCA2679 [Methylococcus capsulatus str. Bath]
 gi|53756876|gb|AAU91167.1| conserved hypothetical protein [Methylococcus capsulatus str. Bath]
          Length = 158

 Score = 41.2 bits (95), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 17/117 (14%)

Query: 1   MIQSFLAG---GLFRF---LLRFIPSGFERIVDVVSEYLTKKQSIEYDKLKLEMAKNDSS 54
           MI++ L G   G FR    +L+++    ER      E   + +++E++KL+      +  
Sbjct: 1   MIETLLGGFLGGAFRLAPEILKWLDRKGER----GHELAMQDKALEFEKLRGAQRMAEIG 56

Query: 55  TQLDLAEIKAGIEELKIDKPIRLARIEAQKVKSGVKWVDGFTALIRPLTTFFWIIVY 111
              D A     IE L+         +  Q  K+GV+W D  ++ +RP+ T++++ +Y
Sbjct: 57  ASADAAWNSGAIEALRDA-------VRTQGEKTGVRWADALSSSVRPVITYWFMALY 106


>gi|255020358|ref|ZP_05292426.1| hypothetical protein ACA_2176 [Acidithiobacillus caldus ATCC 51756]
 gi|254970278|gb|EET27772.1| hypothetical protein ACA_2176 [Acidithiobacillus caldus ATCC 51756]
          Length = 158

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 7/90 (7%)

Query: 22  FERIVDVVSEYLTKKQSIEYDKLKLEMAKNDSSTQLDLAEIKAGIEELKIDKPIRLARIE 81
            +R  +   E   + +++E++KL+      +     D A     IE L+         + 
Sbjct: 24  LDRKGERSHELAMQDKALEFEKLRGAQRMAEIGAGADAAWNVGAIETLR-------EAVA 76

Query: 82  AQKVKSGVKWVDGFTALIRPLTTFFWIIVY 111
           AQ  +SGV+W D  +A +RP+ T++++ +Y
Sbjct: 77  AQGQRSGVRWADALSASVRPVITYWFMALY 106


>gi|299067556|emb|CBJ38758.1| conserved protein of unknown function [Ralstonia solanacearum
           CMR15]
          Length = 158

 Score = 38.9 bits (89), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 29/144 (20%), Positives = 59/144 (40%), Gaps = 22/144 (15%)

Query: 22  FERIVDVVSEYLTKKQSIEYDKLKLEMAKNDSSTQLDLAEIKAGIEELKIDKPIRLARIE 81
            +R  +   E   + +++E++KL+      +     D A     ++ L+         I 
Sbjct: 24  LDRKGERGHELAMQDKALEFEKLRGAQRMAEIGASADAAWNAGALQALRDS-------IS 76

Query: 82  AQKVKSGVKWVDGFTALIRPLTTFFWIIVYPLLVWWSVKEGMFNSD----------PLTL 131
           AQ   SGV WVD  +  +RP+ T++++ +Y      + K   F  +           L  
Sbjct: 77  AQGQTSGVPWVDALSISVRPVITYWFMALYC-----AAKTAAFAGELTAGAGWGAATLQA 131

Query: 132 LSPFTQEIIACILGFWYTDKIVQK 155
            +   Q + A +L FW+  ++  +
Sbjct: 132 WTEADQALWAGVLNFWFVGRVFDR 155


>gi|161525480|ref|YP_001580492.1| hypothetical protein Bmul_2310 [Burkholderia multivorans ATCC
           17616]
 gi|189349791|ref|YP_001945419.1| hypothetical membrane protein [Burkholderia multivorans ATCC 17616]
 gi|160342909|gb|ABX15995.1| conserved hypothetical protein [Burkholderia multivorans ATCC
           17616]
 gi|189333813|dbj|BAG42883.1| hypothetical membrane protein [Burkholderia multivorans ATCC 17616]
          Length = 158

 Score = 38.1 bits (87), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 31/144 (21%), Positives = 62/144 (43%), Gaps = 22/144 (15%)

Query: 22  FERIVDVVSEYLTKKQSIEYDKLKLEMAKNDSSTQLDLAEIKAGIEELKIDKPIRLARIE 81
            +R  +   E   + +++E++KL+      +     D A     IE L+         + 
Sbjct: 24  LDRKGERSHELAMQDKALEFEKLRGASRMAEIGASADSAWNTGAIEALRES-------VA 76

Query: 82  AQKVKSGVKWVDGFTALIRPLTTFFWIIVYPLLVWWSVKEGMF------NSD-PLTLLSP 134
           AQ  +S V+W D  +  +RP+ T++++ +Y      + K   F       SD    +L  
Sbjct: 77  AQGQRSRVRWADALSVSVRPVITYWFMALYC-----AAKTAAFVGAINGGSDWGAAILHA 131

Query: 135 FT---QEIIACILGFWYTDKIVQK 155
           +T   Q + A +L FW+  ++  +
Sbjct: 132 WTDADQALWAGVLNFWFLGRVFDR 155


>gi|17545601|ref|NP_519003.1| transmembrane protein [Ralstonia solanacearum GMI1000]
 gi|17427894|emb|CAD14584.1| putative transmembrane protein [Ralstonia solanacearum GMI1000]
          Length = 158

 Score = 37.7 bits (86), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 29/135 (21%), Positives = 57/135 (42%), Gaps = 22/135 (16%)

Query: 31  EYLTKKQSIEYDKLKLEMAKNDSSTQLDLAEIKAGIEELKIDKPIRLARIEAQKVKSGVK 90
           E   + +++E++KL+      +     D A     IE L+         I AQ   SGV 
Sbjct: 33  ELAMQDKALEFEKLRGAQRMAEIGASADAAWNTGAIEALRDS-------ITAQGQTSGVP 85

Query: 91  WVDGFTALIRPLTTFFWIIVYPLLVWWSVKEGMF----------NSDPLTLLSPFTQEII 140
           WVD  +  +RP+ T++++ +Y      + K   F          ++  +   +   Q + 
Sbjct: 86  WVDALSISVRPVITYWFMGLYC-----AAKTAAFAGVLTAGAGWSTATVQAWTEADQALW 140

Query: 141 ACILGFWYTDKIVQK 155
           A +L FW+  ++  +
Sbjct: 141 AGVLNFWFLGRVFDR 155


>gi|158320695|ref|YP_001513202.1| alanyl-tRNA synthetase [Alkaliphilus oremlandii OhILAs]
 gi|205829976|sp|A8MGI3|SYA_ALKOO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|158140894|gb|ABW19206.1| alanyl-tRNA synthetase [Alkaliphilus oremlandii OhILAs]
          Length = 880

 Score = 37.4 bits (85), Expect = 0.78,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 9/74 (12%)

Query: 23  ERIVDVVSEYLTKKQSIEYDKLKLEMAKNDSSTQLDLAEIKAGI-------EELKIDKPI 75
           ER+ D+V E  TK++  E +KLK ++A N +   LD A +  GI       E  ++D   
Sbjct: 732 ERVADLVHE--TKEKDREINKLKSQLASNSTGDILDKATVVGGINVVVEVLENQEMDDLR 789

Query: 76  RLARIEAQKVKSGV 89
           ++  +  +K+ SGV
Sbjct: 790 KIGDVLKEKIGSGV 803


>gi|242796781|ref|XP_002482872.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
 gi|218719460|gb|EED18880.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
          Length = 450

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 19/84 (22%)

Query: 35  KKQSIEYDKLKLEMAKNDSSTQLDLAEIKAGIEELKIDKPIRL--ARIEAQKVKSGVKWV 92
           KK +   D+      KND +T L LA ++AG  ++KID P+ L  AR+            
Sbjct: 41  KKSASRVDRYHSNRPKNDDTTSLSLAAVEAG--QVKIDDPVELFSARL------------ 86

Query: 93  DGFTALIRPLTTFFWIIVYPLLVW 116
               A  RP++TF      P+  W
Sbjct: 87  ---AAASRPVSTFTEGSRLPVKDW 107


>gi|300689969|ref|YP_003750964.1| hypothetical protein RPSI07_0266 [Ralstonia solanacearum PSI07]
 gi|299077029|emb|CBJ49644.1| conserved protein of unknown function [Ralstonia solanacearum
           PSI07]
          Length = 158

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 28/135 (20%), Positives = 55/135 (40%), Gaps = 22/135 (16%)

Query: 31  EYLTKKQSIEYDKLKLEMAKNDSSTQLDLAEIKAGIEELKIDKPIRLARIEAQKVKSGVK 90
           E   + +++E++KL+      +     D A     IE L+         I  Q   SGV 
Sbjct: 33  ELAMQDKALEFEKLRGAQRMAEIGASADAAWNTGAIEALRDS-------ISVQGQTSGVP 85

Query: 91  WVDGFTALIRPLTTFFWIIVYPLLVWWSVKEGMF----------NSDPLTLLSPFTQEII 140
           WVD  +  +RP+ T++++ +Y      + K   F           +  +   +   Q + 
Sbjct: 86  WVDALSISVRPVITYWFMGLYC-----AAKTAAFAGVLTAGAGWGAATVQAWTEADQALW 140

Query: 141 ACILGFWYTDKIVQK 155
           A +L FW+  ++  +
Sbjct: 141 AGVLNFWFLGRVFDR 155


>gi|152982387|ref|YP_001354417.1| hypothetical protein mma_2727 [Janthinobacterium sp. Marseille]
 gi|151282464|gb|ABR90874.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 158

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 18/82 (21%), Positives = 41/82 (50%), Gaps = 7/82 (8%)

Query: 30  SEYLTKKQSIEYDKLKLEMAKNDSSTQLDLAEIKAGIEELKIDKPIRLARIEAQKVKSGV 89
            E   + +++E++K++     ++     D A     IE L+         +  Q  K+GV
Sbjct: 32  HELAMQDKALEFEKIRGAQRMDEIGAGADAAWNVGAIETLR-------DAVRTQGEKTGV 84

Query: 90  KWVDGFTALIRPLTTFFWIIVY 111
           +W D  ++ +RP+ T++++ +Y
Sbjct: 85  RWADALSSSVRPVITYWFMALY 106


>gi|300697182|ref|YP_003747843.1| hypothetical protein RCFBP_mp20007 [Ralstonia solanacearum
           CFBP2957]
 gi|299073906|emb|CBJ53437.1| conserved protein of unknown function [Ralstonia solanacearum
           CFBP2957]
          Length = 160

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 28/135 (20%), Positives = 55/135 (40%), Gaps = 22/135 (16%)

Query: 31  EYLTKKQSIEYDKLKLEMAKNDSSTQLDLAEIKAGIEELKIDKPIRLARIEAQKVKSGVK 90
           E   + +++E+++++      +     D A     IE L+         I AQ   SGV 
Sbjct: 33  ELAMQDKALEFERVRGAQRMAEIGASADAAWNTGAIEALRDS-------ITAQGQTSGVP 85

Query: 91  WVDGFTALIRPLTTFFWIIVYPLLVWWSVKEGMFN----------SDPLTLLSPFTQEII 140
           W D  +  +RP+ T+ ++ +Y      + K  +F           +  +   S   Q + 
Sbjct: 86  WADALSITVRPVITYSFMALYC-----AAKAAVFTGAITAGAGWITATVHAWSEADQALW 140

Query: 141 ACILGFWYTDKIVQK 155
           A +L FW+  + + K
Sbjct: 141 AGVLNFWFLGRTLDK 155


>gi|157375169|ref|YP_001473769.1| crossover junction endodeoxyribonuclease [Shewanella sediminis
           HAW-EB3]
 gi|189046082|sp|A8FUW8|RUVC_SHESH RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gi|157317543|gb|ABV36641.1| Crossover junction endodeoxyribonuclease [Shewanella sediminis
           HAW-EB3]
          Length = 173

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 3/88 (3%)

Query: 3   QSFLAGGLFRFLLRFIPSGFERIVDVVSEYLTKKQSIEYDKLKLEMAKN-DSSTQLDLAE 61
           Q++L  G  R     +P   ++I D VSE + + Q  E+   ++ MAKN DS+ +L  A 
Sbjct: 26  QTYLGSGCIRTASDDLPYRLKQIFDGVSEIIRQYQPDEFAIERVFMAKNADSALKLGQAR 85

Query: 62  IKAGIEELKIDKPIRLARIEAQKVKSGV 89
             A +     D P+  A   A ++KS V
Sbjct: 86  GAAIVAATNADLPV--AEYSATQIKSAV 111


>gi|207725396|ref|YP_002255792.1| hypothetical protein RSMK00245 [Ralstonia solanacearum MolK2]
 gi|206590632|emb|CAQ37594.1| conserved hypothetical protein [Ralstonia solanacearum MolK2]
          Length = 160

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 28/135 (20%), Positives = 55/135 (40%), Gaps = 22/135 (16%)

Query: 31  EYLTKKQSIEYDKLKLEMAKNDSSTQLDLAEIKAGIEELKIDKPIRLARIEAQKVKSGVK 90
           E   + +++E++K++      +     D A     IE L+         I AQ   SGV 
Sbjct: 33  ELAMQDKALEFEKVRGAQRMAEIGASADAAWNTGAIEALRDS-------ITAQGQTSGVP 85

Query: 91  WVDGFTALIRPLTTFFWIIVYPLLVWWSVKEGMFN----------SDPLTLLSPFTQEII 140
           W D  +  +RP+ T+ ++ +Y      + K  +F           +  +   +   Q + 
Sbjct: 86  WADALSITVRPVITYSFMALYC-----AAKAAVFTGAITAGAGWITATVHAWTEADQALW 140

Query: 141 ACILGFWYTDKIVQK 155
           A +L FW+  + + K
Sbjct: 141 AGVLNFWFLGRTLDK 155


>gi|152980935|ref|YP_001354477.1| hypothetical protein mma_2787 [Janthinobacterium sp. Marseille]
 gi|151281012|gb|ABR89422.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 158

 Score = 35.0 bits (79), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 7/82 (8%)

Query: 30  SEYLTKKQSIEYDKLKLEMAKNDSSTQLDLAEIKAGIEELKIDKPIRLARIEAQKVKSGV 89
            E   + +++E++KL+     ++     D A     IE L+         +  Q  K+GV
Sbjct: 32  HELAMQDKALEFEKLRGAQRLSEIGAGADAAWNVGAIETLR-------EAVRTQGEKTGV 84

Query: 90  KWVDGFTALIRPLTTFFWIIVY 111
           +W D  +  +RP+ T++++ +Y
Sbjct: 85  RWADALSISVRPVITYWFMALY 106


>gi|308161874|gb|EFO64306.1| IFT complex B [Giardia lamblia P15]
          Length = 672

 Score = 35.0 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 27/40 (67%)

Query: 40  EYDKLKLEMAKNDSSTQLDLAEIKAGIEELKIDKPIRLAR 79
           E+D+LK E+   +++ +  + EI+A  EELK + P R+A+
Sbjct: 595 EFDRLKREITSENNACKTQMMEIRAKQEELKCNLPNRMAQ 634


>gi|159119412|ref|XP_001709924.1| IFT complex B [Giardia lamblia ATCC 50803]
 gi|157438042|gb|EDO82250.1| IFT complex B [Giardia lamblia ATCC 50803]
          Length = 672

 Score = 35.0 bits (79), Expect = 3.5,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 27/40 (67%)

Query: 40  EYDKLKLEMAKNDSSTQLDLAEIKAGIEELKIDKPIRLAR 79
           E+D+LK E+   +++ +  + EI+A  EELK + P R+A+
Sbjct: 595 EFDRLKREITSENNACKTQMMEIRAKQEELKCNLPNRMAQ 634


>gi|115390877|ref|XP_001212943.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114193867|gb|EAU35567.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 1183

 Score = 34.7 bits (78), Expect = 4.6,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 8/73 (10%)

Query: 10  LFRFLLRFIPSGFERIVDVVSEYLTKKQSIEYDKLKLEMAKNDSSTQLDL--------AE 61
           L  +  RF    FE+IVD+V  ++T + S ++ + + + AKND+S             AE
Sbjct: 602 LVSWFSRFSVGQFEKIVDLVGSFVTYRLSRQHGRKRSQTAKNDNSLVPSFSSAAGNTPAE 661

Query: 62  IKAGIEELKIDKP 74
           + A I     +KP
Sbjct: 662 LHAAINGRSSNKP 674


>gi|300697168|ref|YP_003747829.1| hypothetical protein RCFBP_mp10636 [Ralstonia solanacearum
           CFBP2957]
 gi|299073892|emb|CBJ53423.1| conserved protein of unknown function (fragment) [Ralstonia
           solanacearum CFBP2957]
          Length = 123

 Score = 34.7 bits (78), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 25/128 (19%), Positives = 53/128 (41%), Gaps = 12/128 (9%)

Query: 35  KKQSIEYDKLKLEMAKNDSSTQLDLAEIKAGIEELKIDKPIRLARIEAQKVKSGVKWVDG 94
           + +++E +K++      +     D A     IE L+         I AQ   SGV W D 
Sbjct: 2   QDKALELEKVRGAQRMAEIGASADAAWNTGAIEALRDS-------ITAQGQTSGVPWADA 54

Query: 95  FTALIRPLTTFFWIIVYPLLVWWS-----VKEGMFNSDPLTLLSPFTQEIIACILGFWYT 149
            +  +RP+ T++++ +Y      +          + +  L   +   Q + A +L FW+ 
Sbjct: 55  LSITVRPVITYWFMALYCAAKTAAFAGAITAGAGWGAATLQAWTEADQALWAGVLNFWFL 114

Query: 150 DKIVQKKK 157
            ++  + +
Sbjct: 115 GRVFDRAR 122


>gi|308159059|gb|EFO61612.1| Hypothetical protein GLP15_5086 [Giardia lamblia P15]
          Length = 3411

 Score = 34.3 bits (77), Expect = 5.3,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 32/54 (59%)

Query: 16   RFIPSGFERIVDVVSEYLTKKQSIEYDKLKLEMAKNDSSTQLDLAEIKAGIEEL 69
            R +P+G++ I+D+ ++Y+ +     Y+ + ++   ND   +L L  IKA I ++
Sbjct: 2479 RVLPTGYKNIMDLQTDYVFETNYKYYEHIAIQSTINDRVYRLGLMPIKAVIRDI 2532


>gi|257875918|ref|ZP_05655571.1| glutamyl-tRNA synthetase [Enterococcus casseliflavus EC20]
 gi|257810084|gb|EEV38904.1| glutamyl-tRNA synthetase [Enterococcus casseliflavus EC20]
          Length = 485

 Score = 34.3 bits (77), Expect = 6.2,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 12/114 (10%)

Query: 5   FLAGGLFRF--LLRFIPSGFERI------VDVVSEYLTKKQSIEYDKLKLEMAKNDSSTQ 56
           +L   +F F  LL + P G E I      + +       K    +D  KLE   N    Q
Sbjct: 273 YLPDAMFNFIALLGWSPVGEEEIFSQEELIKIFDPERLSKSPAAFDAKKLEWVNNQYMKQ 332

Query: 57  LDLAEIKAGIEELKIDKPIRLARIEAQKVKSGVKWVDGFTALIRPLTTFFWIIV 110
           +DL E+ A    + +   ++  RIE    +    W+    +L +P  +F   IV
Sbjct: 333 MDLDELTA----MCVPYLVKAGRIEETLTEEKAAWLKKIVSLYQPQMSFAAQIV 382


>gi|325567617|ref|ZP_08144284.1| glutamate--tRNA ligase [Enterococcus casseliflavus ATCC 12755]
 gi|325159050|gb|EGC71196.1| glutamate--tRNA ligase [Enterococcus casseliflavus ATCC 12755]
          Length = 485

 Score = 34.3 bits (77), Expect = 6.5,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 12/114 (10%)

Query: 5   FLAGGLFRF--LLRFIPSGFERI------VDVVSEYLTKKQSIEYDKLKLEMAKNDSSTQ 56
           +L   +F F  LL + P G E I      + +       K    +D  KLE   N    Q
Sbjct: 273 YLPDAMFNFIALLGWSPVGEEEIFSQEELIKIFDPERLSKSPAAFDAKKLEWVNNQYMKQ 332

Query: 57  LDLAEIKAGIEELKIDKPIRLARIEAQKVKSGVKWVDGFTALIRPLTTFFWIIV 110
           +DL E+ A    + +   ++  RIE    +    W+    +L +P  +F   IV
Sbjct: 333 MDLDELTA----MCVPYLVKAGRIEETLTEEKAAWLKKIVSLYQPQMSFAAQIV 382


>gi|330794833|ref|XP_003285481.1| hypothetical protein DICPUDRAFT_149347 [Dictyostelium purpureum]
 gi|325084572|gb|EGC37997.1| hypothetical protein DICPUDRAFT_149347 [Dictyostelium purpureum]
          Length = 634

 Score = 33.9 bits (76), Expect = 7.3,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 26/112 (23%)

Query: 27  DVVSEYLTKKQSIEYD-KLKLEMAKNDSSTQLDLAEIKAGIEELKIDKPIR---LARIEA 82
           D+ +  L+KKQ  E+   L  ++ +N +     L  IK     LKID+P+R   LA +E 
Sbjct: 4   DIYNSLLSKKQQEEHAWSLNEDILENQAQLFFSLKSIKG----LKIDEPVRIYCLASLEK 59

Query: 83  QKV---------KSGVKWVDGFTALIRPLTTFFWIIVYPLLVWWSVKEGMFN 125
           Q +         +S ++W +G+T         F +I    ++  S+ +G FN
Sbjct: 60  QSIQTSSIIVRDQSPIEWNEGYT---------FDVISSKSVLALSIWQGNFN 102


>gi|281358725|ref|ZP_06245202.1| hypothetical protein Vvad_PD0197 [Victivallis vadensis ATCC
           BAA-548]
 gi|281314851|gb|EFA98887.1| hypothetical protein Vvad_PD0197 [Victivallis vadensis ATCC
           BAA-548]
          Length = 329

 Score = 33.9 bits (76), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 6/112 (5%)

Query: 31  EYLTKKQSIEYDKLKLEMAKNDSSTQLDLAE--IKAGIEELKIDKPIRLARIEAQKVKS- 87
            Y+T  +S+  D++KL +   D+ + L   E  +   +E LK D  IRLA +EA      
Sbjct: 130 HYVTADRSVPEDRIKLALCYLDADSVLATEEPYLAHFLEGLKTDSAIRLAAVEAPAGNPV 189

Query: 88  --GVKWVDGFTALIRPLTTFFWIIVYPL-LVWWSVKEGMFNSDPLTLLSPFT 136
             G   V   TA  +   + F +    L  V W +  G  +   LTL +  T
Sbjct: 190 IWGFLNVRSLTAGNKRKASLFQVFFRDLRRVVWEIASGGEHGGALTLSATGT 241


>gi|116672163|ref|YP_833096.1| LysR family transcriptional regulator [Arthrobacter sp. FB24]
 gi|116612272|gb|ABK04996.1| transcriptional regulator, LysR family [Arthrobacter sp. FB24]
          Length = 307

 Score = 33.5 bits (75), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 8/93 (8%)

Query: 28  VVSEYLTKKQSIEYDKLKLEMAKNDSSTQLDLAEIKAGIEELKIDKPIRLARIEAQKVKS 87
            VS+ LTK +      L +   K    T   LA  +AG EE++    +  ARIE     +
Sbjct: 33  AVSQQLTKLEDETGHALVVRTPKGSVLTPAGLAVAEAG-EEIERALSVARARIEGGAKVA 91

Query: 88  GVKWVDGFTALIRPLTTFFWIIVYPLLVWWSVK 120
           GV  V GFT+ +R        +V P L  W  +
Sbjct: 92  GVVRVGGFTSFVR-------TVVIPRLPGWRTQ 117


>gi|307149659|ref|YP_003891029.1| TPR repeat-containing protein [Cyanothece sp. PCC 7822]
 gi|306986788|gb|ADN18664.1| TPR repeat-containing protein [Cyanothece sp. PCC 7822]
          Length = 568

 Score = 33.5 bits (75), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 7/61 (11%)

Query: 5   FLAGGLFRFLLRFIPSGFE-------RIVDVVSEYLTKKQSIEYDKLKLEMAKNDSSTQL 57
           +L G LF  +  FIPS F         ++D+V++YL K  ++ + +  L+  K ++ TQL
Sbjct: 177 YLIGELFGLVENFIPSPFNSLPTLAGNVLDLVAKYLGKDLTLAFKRRGLKKEKFEAITQL 236

Query: 58  D 58
           D
Sbjct: 237 D 237


Searching..................................................done


Results from round 2




>gi|315122886|ref|YP_004063375.1| hypothetical protein CKC_05710 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313496288|gb|ADR52887.1| hypothetical protein CKC_05710 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 158

 Score =  251 bits (642), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 123/157 (78%), Positives = 139/157 (88%)

Query: 1   MIQSFLAGGLFRFLLRFIPSGFERIVDVVSEYLTKKQSIEYDKLKLEMAKNDSSTQLDLA 60
           MIQSFLAGGLFRF LRF+PS FE+I D V EYL +KQSIEYDK+KLE  + +SSTQLDLA
Sbjct: 1   MIQSFLAGGLFRFALRFVPSVFEKIADGVLEYLMQKQSIEYDKMKLEQTRINSSTQLDLA 60

Query: 61  EIKAGIEELKIDKPIRLARIEAQKVKSGVKWVDGFTALIRPLTTFFWIIVYPLLVWWSVK 120
           +IK  IEELK+D+PIRLARI+AQKVKSGVKW+DG   LIRPLTT FWIIVYPLLVWWSVK
Sbjct: 61  DIKYAIEELKVDQPIRLARIKAQKVKSGVKWIDGLNTLIRPLTTLFWIIVYPLLVWWSVK 120

Query: 121 EGMFNSDPLTLLSPFTQEIIACILGFWYTDKIVQKKK 157
           EG+F+  PL++LSPF QEIIACILGFWYTDKIVQKK+
Sbjct: 121 EGIFDRSPLSILSPFEQEIIACILGFWYTDKIVQKKR 157


>gi|315121924|ref|YP_004062413.1| hypothetical protein CKC_00870 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495326|gb|ADR51925.1| hypothetical protein CKC_00870 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 158

 Score =  246 bits (629), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 123/157 (78%), Positives = 138/157 (87%)

Query: 1   MIQSFLAGGLFRFLLRFIPSGFERIVDVVSEYLTKKQSIEYDKLKLEMAKNDSSTQLDLA 60
           MIQSFLAGG+FRF LRF+PS FE+I D V EYL +KQSIEYDK+KLE  K +SSTQLDLA
Sbjct: 1   MIQSFLAGGIFRFALRFVPSVFEKIADGVLEYLMQKQSIEYDKMKLEQTKINSSTQLDLA 60

Query: 61  EIKAGIEELKIDKPIRLARIEAQKVKSGVKWVDGFTALIRPLTTFFWIIVYPLLVWWSVK 120
           EIK GIEELK+DKPIRLARI+AQKVKSG+KW+DG  ALIRPLTT FWIIVYPLLVWWSVK
Sbjct: 61  EIKYGIEELKVDKPIRLARIKAQKVKSGIKWIDGVNALIRPLTTLFWIIVYPLLVWWSVK 120

Query: 121 EGMFNSDPLTLLSPFTQEIIACILGFWYTDKIVQKKK 157
           EG F+  PL +L+ F QEIIACILGFWYTDKIVQK++
Sbjct: 121 EGYFDKSPLAVLTLFEQEIIACILGFWYTDKIVQKRR 157


>gi|254781199|ref|YP_003065612.1| hypothetical protein CLIBASIA_05530 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040876|gb|ACT57672.1| hypothetical protein CLIBASIA_05530 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|317120664|gb|ADV02487.1| hypothetical protein SC1_gp005 [Liberibacter phage SC1]
 gi|317120808|gb|ADV02629.1| hypothetical protein SC1_gp005 [Candidatus Liberibacter asiaticus]
          Length = 157

 Score =  241 bits (615), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 157/157 (100%), Positives = 157/157 (100%)

Query: 1   MIQSFLAGGLFRFLLRFIPSGFERIVDVVSEYLTKKQSIEYDKLKLEMAKNDSSTQLDLA 60
           MIQSFLAGGLFRFLLRFIPSGFERIVDVVSEYLTKKQSIEYDKLKLEMAKNDSSTQLDLA
Sbjct: 1   MIQSFLAGGLFRFLLRFIPSGFERIVDVVSEYLTKKQSIEYDKLKLEMAKNDSSTQLDLA 60

Query: 61  EIKAGIEELKIDKPIRLARIEAQKVKSGVKWVDGFTALIRPLTTFFWIIVYPLLVWWSVK 120
           EIKAGIEELKIDKPIRLARIEAQKVKSGVKWVDGFTALIRPLTTFFWIIVYPLLVWWSVK
Sbjct: 61  EIKAGIEELKIDKPIRLARIEAQKVKSGVKWVDGFTALIRPLTTFFWIIVYPLLVWWSVK 120

Query: 121 EGMFNSDPLTLLSPFTQEIIACILGFWYTDKIVQKKK 157
           EGMFNSDPLTLLSPFTQEIIACILGFWYTDKIVQKKK
Sbjct: 121 EGMFNSDPLTLLSPFTQEIIACILGFWYTDKIVQKKK 157


>gi|317120748|gb|ADV02570.1| hypothetical protein SC2_gp250 [Liberibacter phage SC2]
 gi|317120762|gb|ADV02583.1| hypothetical protein SC2_gp250 [Candidatus Liberibacter asiaticus]
          Length = 157

 Score =  240 bits (612), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 127/157 (80%), Positives = 142/157 (90%)

Query: 1   MIQSFLAGGLFRFLLRFIPSGFERIVDVVSEYLTKKQSIEYDKLKLEMAKNDSSTQLDLA 60
           MIQSFLAGGLFRFLLRFIPS FERIVDVVSEYLTKKQSIEYDK KLE AK DSS QLDLA
Sbjct: 1   MIQSFLAGGLFRFLLRFIPSSFERIVDVVSEYLTKKQSIEYDKWKLETAKIDSSLQLDLA 60

Query: 61  EIKAGIEELKIDKPIRLARIEAQKVKSGVKWVDGFTALIRPLTTFFWIIVYPLLVWWSVK 120
           +IK GIEELK DKPI+LARI+AQ +KSGVKW+D F  L+RPLTT FWIIVYP++VWWSVK
Sbjct: 61  DIKYGIEELKADKPIKLARIKAQNIKSGVKWIDSFNTLVRPLTTLFWIIVYPMMVWWSVK 120

Query: 121 EGMFNSDPLTLLSPFTQEIIACILGFWYTDKIVQKKK 157
           EG+F+  PL++LSPF QEIIACILGFW+TDKIVQK++
Sbjct: 121 EGIFDKSPLSILSPFEQEIIACILGFWFTDKIVQKRR 157


>gi|317120705|gb|ADV02527.1| hypothetical protein SC2_gp005 [Liberibacter phage SC2]
 gi|317120766|gb|ADV02587.1| hypothetical protein SC2_gp005 [Candidatus Liberibacter asiaticus]
          Length = 158

 Score =  230 bits (587), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 125/156 (80%), Positives = 144/156 (92%)

Query: 1   MIQSFLAGGLFRFLLRFIPSGFERIVDVVSEYLTKKQSIEYDKLKLEMAKNDSSTQLDLA 60
           MIQSFLAGGLFRFLLRFIPS FERIVDVVSEYLTKKQS+EY+K+++E+AK ++STQ++L 
Sbjct: 1   MIQSFLAGGLFRFLLRFIPSSFERIVDVVSEYLTKKQSLEYNKMQIELAKINTSTQVNLE 60

Query: 61  EIKAGIEELKIDKPIRLARIEAQKVKSGVKWVDGFTALIRPLTTFFWIIVYPLLVWWSVK 120
           EIK GIEELK DKPIRLAR+++Q VK  +KW++GF ALIRPLTT FWI+VYPLLVWWSVK
Sbjct: 61  EIKYGIEELKADKPIRLARVKSQNVKIDIKWINGFNALIRPLTTLFWIVVYPLLVWWSVK 120

Query: 121 EGMFNSDPLTLLSPFTQEIIACILGFWYTDKIVQKK 156
           E MF+ DPLTLLSPFTQEIIACILGFWYTDKIVQK+
Sbjct: 121 ERMFSIDPLTLLSPFTQEIIACILGFWYTDKIVQKR 156


>gi|315122344|ref|YP_004062833.1| hypothetical protein CKC_02980 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495746|gb|ADR52345.1| hypothetical protein CKC_02980 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 125

 Score =  188 bits (476), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 94/126 (74%), Positives = 110/126 (87%), Gaps = 4/126 (3%)

Query: 34  TKKQSIEYDKLKLEMAKNDSSTQLDLAEIKAGIEELKIDKPIRLARIEAQKVKSGVKWVD 93
            +KQSIEYDK KLE+A+   STQLDLA+IK  IEELK+D+PIRLARI+AQK KSG+KW+D
Sbjct: 1   MQKQSIEYDKTKLELAR--GSTQLDLADIKYAIEELKVDQPIRLARIKAQKFKSGIKWID 58

Query: 94  GFTALIRPLTTFFWIIVYPLLVWW--SVKEGMFNSDPLTLLSPFTQEIIACILGFWYTDK 151
           GF ALIRPLTTFFWII+YPLLVW    VKEG+F+  PL++LSPF Q+IIACILGFWYTDK
Sbjct: 59  GFNALIRPLTTFFWIIIYPLLVWGIVCVKEGVFDRSPLSILSPFEQDIIACILGFWYTDK 118

Query: 152 IVQKKK 157
           IVQKK+
Sbjct: 119 IVQKKR 124


>gi|315122770|ref|YP_004063259.1| hypothetical protein CKC_05125 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313496172|gb|ADR52771.1| hypothetical protein CKC_05125 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 124

 Score =  180 bits (457), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 90/122 (73%), Positives = 105/122 (86%)

Query: 1   MIQSFLAGGLFRFLLRFIPSGFERIVDVVSEYLTKKQSIEYDKLKLEMAKNDSSTQLDLA 60
           MIQSFL G +FRF LRFIPS FE+I D V EYL +KQSIEYDK+KLE+A+ +SSTQLDLA
Sbjct: 1   MIQSFLVGEVFRFALRFIPSVFEKIADGVLEYLMQKQSIEYDKMKLELARINSSTQLDLA 60

Query: 61  EIKAGIEELKIDKPIRLARIEAQKVKSGVKWVDGFTALIRPLTTFFWIIVYPLLVWWSVK 120
           +IK  IEELK D+ IRLARI+AQKVKSG++W+DGF A +RPLT+ FWIIVYPLLVWWSVK
Sbjct: 61  DIKLEIEELKADQLIRLARIKAQKVKSGIQWIDGFNAFVRPLTSLFWIIVYPLLVWWSVK 120

Query: 121 EG 122
            G
Sbjct: 121 GG 122


>gi|254780988|ref|YP_003065401.1| hypothetical protein CLIBASIA_04445 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040665|gb|ACT57461.1| hypothetical protein CLIBASIA_04445 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 151

 Score =  180 bits (457), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 80/158 (50%), Positives = 113/158 (71%), Gaps = 15/158 (9%)

Query: 4   SFLAGGLFRFLLRFIPSGFERIVDVVSEYLTKKQSIEYDKLKLEMAKNDSSTQLDLAEIK 63
           SFL G + RF ++F+PS F    +++ EY+ K++SIE+D+L+LE+AK  S+TQ+DL    
Sbjct: 3   SFLTGSIARFFIKFVPSLF----NLLEEYIMKEKSIEHDRLRLEIAKIQSTTQVDLK--- 55

Query: 64  AGIEELKIDKPIRLARIEAQ----KVKSGVKWVDGFTALIRPLTTFFWIIVYPLLVWWSV 119
                L+ + P+RLAR++ Q    + +   K +  F ALIRP TT FWII+YPLL+WW V
Sbjct: 56  ----ALESETPVRLARLQNQANEDQFERESKAMIFFNALIRPFTTLFWIILYPLLIWWGV 111

Query: 120 KEGMFNSDPLTLLSPFTQEIIACILGFWYTDKIVQKKK 157
           ++G    DPLTLL+PFTQ+IIACILGFW+TD IVQ++K
Sbjct: 112 EKGYLTKDPLTLLAPFTQDIIACILGFWFTDTIVQRRK 149


>gi|315122566|ref|YP_004063055.1| hypothetical protein CKC_04090 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495968|gb|ADR52567.1| hypothetical protein CKC_04090 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 130

 Score =  178 bits (451), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 91/130 (70%), Positives = 111/130 (85%), Gaps = 7/130 (5%)

Query: 34  TKKQSIEYDKLKLEMAKNDSSTQLDLAEIKAGIEELKIDKPIRLARIEAQKVKSGVKWVD 93
            +K+SIEY+K+KLE  +  SSTQLDLA+IK GIEELK+D+PIRLARI+AQ+VKSG++W+D
Sbjct: 1   MQKRSIEYEKMKLEQTRIQSSTQLDLADIKLGIEELKVDQPIRLARIKAQQVKSGIQWID 60

Query: 94  GF----TALIRPLTTFFWIIVYPLLVWWS--VKEGMFNSDPLTLLSPFTQEIIACILGFW 147
            F     ALIRPLTT FWII +PLLVWWS  VKEG+F+  PL++LSPF Q+IIACILGFW
Sbjct: 61  AFNALINALIRPLTTLFWII-FPLLVWWSMGVKEGIFDRSPLSILSPFEQDIIACILGFW 119

Query: 148 YTDKIVQKKK 157
           YTDKIVQKK+
Sbjct: 120 YTDKIVQKKR 129


>gi|315121790|ref|YP_004062279.1| hypothetical protein CKC_00200 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495192|gb|ADR51791.1| hypothetical protein CKC_00200 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 121

 Score =  150 bits (379), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 71/108 (65%), Positives = 84/108 (77%), Gaps = 2/108 (1%)

Query: 1   MIQSFLAGGLFRFLLRFIPSGFERIVDVVSEYLTKKQSIEYDKLKLEMAKNDSSTQLDLA 60
           M++SFLA GLFR  LRFIPS FE+I D V EYL +KQSIEYDK KLE+A+ + STQLDLA
Sbjct: 1   MMESFLASGLFRLALRFIPSVFEKIADGVLEYLMQKQSIEYDKTKLELARINGSTQLDLA 60

Query: 61  EIKAGIEELKIDKPIRLARIEAQKVK--SGVKWVDGFTALIRPLTTFF 106
           +IK  IEELK+D+ IRLARI+AQKVK  SGVKW+DGF +L       F
Sbjct: 61  DIKYAIEELKVDQSIRLARIKAQKVKSGSGVKWIDGFDSLNSTSHNLF 108


>gi|17547913|ref|NP_521315.1| hypothetical protein RSc3194 [Ralstonia solanacearum GMI1000]
 gi|17430219|emb|CAD16982.1| hypothetical transmembrane protein [Ralstonia solanacearum GMI1000]
          Length = 160

 Score =  147 bits (370), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 71/156 (45%), Gaps = 20/156 (12%)

Query: 6   LAGGLFRFLLRFIPSGFERIVDVVSEYLTKKQSIEYDKLKLEMAKNDSSTQLDLAEIKAG 65
           LA GL ++L R    G E           + +++E++KL+      +     D A     
Sbjct: 16  LAPGLLKWLDRKGERGHELA--------MQDKALEFEKLRGAQRMAEIGASADAAWNTGA 67

Query: 66  IEELKIDKPIRLARIEAQKVKSGVKWVDGFTALIRPLTTFFWIIVYPLL----VWWSVKE 121
           IE L+         I AQ  K+GV+W D  +  +RP+ T+ ++++Y  +       S + 
Sbjct: 68  IEALRDS-------ITAQGEKTGVRWADALSTTVRPVVTYLFVLMYTGVKLSTFGGSAQA 120

Query: 122 GM-FNSDPLTLLSPFTQEIIACILGFWYTDKIVQKK 156
           G+ F    L   S   Q ++A IL FW+  ++ +++
Sbjct: 121 GVGFGPALLAAWSEADQALLAGILNFWFISRVWERR 156


>gi|315122303|ref|YP_004062792.1| hypothetical protein CKC_02775 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495705|gb|ADR52304.1| hypothetical protein CKC_02775 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 115

 Score =  140 bits (352), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 70/102 (68%), Positives = 84/102 (82%), Gaps = 5/102 (4%)

Query: 19  PSGFERIVDVVSEYLTKKQSIEYDKLKLEMAKNDSSTQLDLAEIKAGIEELKIDKPIRLA 78
           PS FE+I D V EYL +KQSIEYDK+ LE+ + +SSTQLDLA+IK  IEELK+D+ IRLA
Sbjct: 14  PSVFEKIADGVLEYLMQKQSIEYDKMNLELPRINSSTQLDLADIKYAIEELKVDQSIRLA 73

Query: 79  RIEAQKVK--SGVKWVDGFTALIRPLTTFFWIIVYPLLVWWS 118
           RI+AQKVK  SGVKW+DGF ALIRPLTTFFWII++    +WS
Sbjct: 74  RIKAQKVKNGSGVKWIDGFNALIRPLTTFFWIIIFR---YWS 112


>gi|315122634|ref|YP_004063123.1| hypothetical protein CKC_04430 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313496036|gb|ADR52635.1| hypothetical protein CKC_04430 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 228

 Score =  119 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 57/80 (71%), Positives = 69/80 (86%), Gaps = 2/80 (2%)

Query: 29  VSEYLTKKQSIEYDKLKLEMAKNDSSTQLDLAEIKAGIEELKIDKPIRLARIEAQKVK-- 86
           +SE+L +K+ IEYDK KLE  +  S+TQLDLA+IK GIEELK+D+PIRLARI+AQKVK  
Sbjct: 131 ISEHLMQKRFIEYDKTKLEQTRIQSTTQLDLADIKLGIEELKVDQPIRLARIKAQKVKSS 190

Query: 87  SGVKWVDGFTALIRPLTTFF 106
           SGVKW+DGF +LIRPLTTFF
Sbjct: 191 SGVKWIDGFNSLIRPLTTFF 210


>gi|53803115|ref|YP_115083.1| hypothetical protein MCA2679 [Methylococcus capsulatus str. Bath]
 gi|53756876|gb|AAU91167.1| conserved hypothetical protein [Methylococcus capsulatus str. Bath]
          Length = 158

 Score =  107 bits (266), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 63/157 (40%), Gaps = 20/157 (12%)

Query: 6   LAGGLFRFLLRFIPSGFERIVDVVSEYLTKKQSIEYDKLKLEMAKNDSSTQLDLAEIKAG 65
           LA  + ++L R    G E           + +++E++KL+      +     D A     
Sbjct: 16  LAPEILKWLDRKGERGHELA--------MQDKALEFEKLRGAQRMAEIGASADAAWNSGA 67

Query: 66  IEELKIDKPIRLARIEAQKVKSGVKWVDGFTALIRPLTTFFWIIVY-----PLLVWWSVK 120
           IE L+         +  Q  K+GV+W D  ++ +RP+ T++++ +Y              
Sbjct: 68  IEALRDA-------VRTQGEKTGVRWADALSSSVRPVITYWFMALYCAAKTAAFAAAVTA 120

Query: 121 EGMFNSDPLTLLSPFTQEIIACILGFWYTDKIVQKKK 157
              +    L   +   Q + A +L FW+  ++  + +
Sbjct: 121 GAGWGVAILHAWTEADQALWAGVLNFWFLGRVFDRGR 157


>gi|299067556|emb|CBJ38758.1| conserved protein of unknown function [Ralstonia solanacearum
           CMR15]
          Length = 158

 Score =  105 bits (261), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 65/157 (41%), Gaps = 20/157 (12%)

Query: 6   LAGGLFRFLLRFIPSGFERIVDVVSEYLTKKQSIEYDKLKLEMAKNDSSTQLDLAEIKAG 65
           LA  L ++L R    G E           + +++E++KL+      +     D A     
Sbjct: 16  LAPELLKWLDRKGERGHELA--------MQDKALEFEKLRGAQRMAEIGASADAAWNAGA 67

Query: 66  IEELKIDKPIRLARIEAQKVKSGVKWVDGFTALIRPLTTFFWIIVY----PLLVWWSVKE 121
           ++ L+         I AQ   SGV WVD  +  +RP+ T++++ +Y           +  
Sbjct: 68  LQALRDS-------ISAQGQTSGVPWVDALSISVRPVITYWFMALYCAAKTAAFAGELTA 120

Query: 122 GM-FNSDPLTLLSPFTQEIIACILGFWYTDKIVQKKK 157
           G  + +  L   +   Q + A +L FW+  ++  + +
Sbjct: 121 GAGWGAATLQAWTEADQALWAGVLNFWFVGRVFDRVR 157


>gi|300697182|ref|YP_003747843.1| hypothetical protein RCFBP_mp20007 [Ralstonia solanacearum
           CFBP2957]
 gi|299073906|emb|CBJ53437.1| conserved protein of unknown function [Ralstonia solanacearum
           CFBP2957]
          Length = 160

 Score =  104 bits (260), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 64/155 (41%), Gaps = 20/155 (12%)

Query: 6   LAGGLFRFLLRFIPSGFERIVDVVSEYLTKKQSIEYDKLKLEMAKNDSSTQLDLAEIKAG 65
           LA  + ++L R    G E           + +++E+++++      +     D A     
Sbjct: 16  LAPEILKWLDRKGERGHELA--------MQDKALEFERVRGAQRMAEIGASADAAWNTGA 67

Query: 66  IEELKIDKPIRLARIEAQKVKSGVKWVDGFTALIRPLTTFFWIIVY----PLLVWWSVKE 121
           IE L+         I AQ   SGV W D  +  +RP+ T+ ++ +Y      +   ++  
Sbjct: 68  IEALRDS-------ITAQGQTSGVPWADALSITVRPVITYSFMALYCAAKAAVFTGAITA 120

Query: 122 GM-FNSDPLTLLSPFTQEIIACILGFWYTDKIVQK 155
           G  + +  +   S   Q + A +L FW+  + + K
Sbjct: 121 GAGWITATVHAWSEADQALWAGVLNFWFLGRTLDK 155


>gi|207725396|ref|YP_002255792.1| hypothetical protein RSMK00245 [Ralstonia solanacearum MolK2]
 gi|206590632|emb|CAQ37594.1| conserved hypothetical protein [Ralstonia solanacearum MolK2]
          Length = 160

 Score =  104 bits (259), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 64/155 (41%), Gaps = 20/155 (12%)

Query: 6   LAGGLFRFLLRFIPSGFERIVDVVSEYLTKKQSIEYDKLKLEMAKNDSSTQLDLAEIKAG 65
           LA  + ++L R    G E           + +++E++K++      +     D A     
Sbjct: 16  LAPEILKWLDRKGERGHELA--------MQDKALEFEKVRGAQRMAEIGASADAAWNTGA 67

Query: 66  IEELKIDKPIRLARIEAQKVKSGVKWVDGFTALIRPLTTFFWIIVY----PLLVWWSVKE 121
           IE L+         I AQ   SGV W D  +  +RP+ T+ ++ +Y      +   ++  
Sbjct: 68  IEALRDS-------ITAQGQTSGVPWADALSITVRPVITYSFMALYCAAKAAVFTGAITA 120

Query: 122 GM-FNSDPLTLLSPFTQEIIACILGFWYTDKIVQK 155
           G  + +  +   +   Q + A +L FW+  + + K
Sbjct: 121 GAGWITATVHAWTEADQALWAGVLNFWFLGRTLDK 155


>gi|17545601|ref|NP_519003.1| transmembrane protein [Ralstonia solanacearum GMI1000]
 gi|17427894|emb|CAD14584.1| putative transmembrane protein [Ralstonia solanacearum GMI1000]
          Length = 158

 Score =  104 bits (259), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 66/157 (42%), Gaps = 20/157 (12%)

Query: 6   LAGGLFRFLLRFIPSGFERIVDVVSEYLTKKQSIEYDKLKLEMAKNDSSTQLDLAEIKAG 65
           LA  + +++ R    G E           + +++E++KL+      +     D A     
Sbjct: 16  LAPEILKWIDRKGERGHELA--------MQDKALEFEKLRGAQRMAEIGASADAAWNTGA 67

Query: 66  IEELKIDKPIRLARIEAQKVKSGVKWVDGFTALIRPLTTFFWIIVY----PLLVWWSVKE 121
           IE L+         I AQ   SGV WVD  +  +RP+ T++++ +Y           +  
Sbjct: 68  IEALRDS-------ITAQGQTSGVPWVDALSISVRPVITYWFMGLYCAAKTAAFAGVLTA 120

Query: 122 GM-FNSDPLTLLSPFTQEIIACILGFWYTDKIVQKKK 157
           G  +++  +   +   Q + A +L FW+  ++  + +
Sbjct: 121 GAGWSTATVQAWTEADQALWAGVLNFWFLGRVFDRVR 157


>gi|300689969|ref|YP_003750964.1| hypothetical protein RPSI07_0266 [Ralstonia solanacearum PSI07]
 gi|299077029|emb|CBJ49644.1| conserved protein of unknown function [Ralstonia solanacearum
           PSI07]
          Length = 158

 Score =  104 bits (259), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 64/157 (40%), Gaps = 20/157 (12%)

Query: 6   LAGGLFRFLLRFIPSGFERIVDVVSEYLTKKQSIEYDKLKLEMAKNDSSTQLDLAEIKAG 65
           LA  L ++L R    G E           + +++E++KL+      +     D A     
Sbjct: 16  LAPELLKWLDRKGERGHELA--------MQDKALEFEKLRGAQRMAEIGASADAAWNTGA 67

Query: 66  IEELKIDKPIRLARIEAQKVKSGVKWVDGFTALIRPLTTFFWIIVY----PLLVWWSVKE 121
           IE L+         I  Q   SGV WVD  +  +RP+ T++++ +Y           +  
Sbjct: 68  IEALRDS-------ISVQGQTSGVPWVDALSISVRPVITYWFMGLYCAAKTAAFAGVLTA 120

Query: 122 GM-FNSDPLTLLSPFTQEIIACILGFWYTDKIVQKKK 157
           G  + +  +   +   Q + A +L FW+  ++  + +
Sbjct: 121 GAGWGAATVQAWTEADQALWAGVLNFWFLGRVFDRVR 157


>gi|161525480|ref|YP_001580492.1| hypothetical protein Bmul_2310 [Burkholderia multivorans ATCC
           17616]
 gi|189349791|ref|YP_001945419.1| hypothetical membrane protein [Burkholderia multivorans ATCC 17616]
 gi|160342909|gb|ABX15995.1| conserved hypothetical protein [Burkholderia multivorans ATCC
           17616]
 gi|189333813|dbj|BAG42883.1| hypothetical membrane protein [Burkholderia multivorans ATCC 17616]
          Length = 158

 Score =  102 bits (254), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 65/157 (41%), Gaps = 20/157 (12%)

Query: 6   LAGGLFRFLLRFIPSGFERIVDVVSEYLTKKQSIEYDKLKLEMAKNDSSTQLDLAEIKAG 65
           LA  + ++L R      E           + +++E++KL+      +     D A     
Sbjct: 16  LAPEILKWLDRKGERSHELA--------MQDKALEFEKLRGASRMAEIGASADSAWNTGA 67

Query: 66  IEELKIDKPIRLARIEAQKVKSGVKWVDGFTALIRPLTTFFWIIVY----PLLVWWSVKE 121
           IE L+         + AQ  +S V+W D  +  +RP+ T++++ +Y          ++  
Sbjct: 68  IEALRES-------VAAQGQRSRVRWADALSVSVRPVITYWFMALYCAAKTAAFVGAING 120

Query: 122 GM-FNSDPLTLLSPFTQEIIACILGFWYTDKIVQKKK 157
           G  + +  L   +   Q + A +L FW+  ++  + +
Sbjct: 121 GSDWGAAILHAWTDADQALWAGVLNFWFLGRVFDRVR 157


>gi|152982387|ref|YP_001354417.1| hypothetical protein mma_2727 [Janthinobacterium sp. Marseille]
 gi|151282464|gb|ABR90874.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 158

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 65/157 (41%), Gaps = 20/157 (12%)

Query: 6   LAGGLFRFLLRFIPSGFERIVDVVSEYLTKKQSIEYDKLKLEMAKNDSSTQLDLAEIKAG 65
           LA    ++L R    G E           + +++E++K++     ++     D A     
Sbjct: 16  LAPEFLKWLDRKGERGHELA--------MQDKALEFEKIRGAQRMDEIGAGADAAWNVGA 67

Query: 66  IEELKIDKPIRLARIEAQKVKSGVKWVDGFTALIRPLTTFFWIIVYPLLVWWSVKEGM-- 123
           IE L+         +  Q  K+GV+W D  ++ +RP+ T++++ +Y      +    +  
Sbjct: 68  IETLRDA-------VRTQGEKTGVRWADALSSSVRPVITYWFMALYCAAKTAAFVAAVTA 120

Query: 124 ---FNSDPLTLLSPFTQEIIACILGFWYTDKIVQKKK 157
              +    L   +   Q + A +L FW+  ++  + +
Sbjct: 121 GAGYGVAILHAWTEADQALWAGVLNFWFLGRVFDRVR 157


>gi|222112355|ref|YP_002554619.1| hypothetical protein Dtpsy_3188 [Acidovorax ebreus TPSY]
 gi|221731799|gb|ACM34619.1| conserved hypothetical protein [Acidovorax ebreus TPSY]
          Length = 158

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 63/157 (40%), Gaps = 20/157 (12%)

Query: 6   LAGGLFRFLLRFIPSGFERIVDVVSEYLTKKQSIEYDKLKLEMAKNDSSTQLDLAEIKAG 65
           LA  + ++L R    G E           + +++E++KL+      +     + A     
Sbjct: 16  LAPEILKWLDRKGERGHELA--------MQDKALEFEKLRGAQRMAEIGASAEAAWNVGA 67

Query: 66  IEELKIDKPIRLARIEAQKVKSGVKWVDGFTALIRPLTTFFWIIVY-----PLLVWWSVK 120
           ++ L+         I  Q  K+GV+W D  +  +RP+ T++++ +Y              
Sbjct: 68  VDALREA-------IRTQGEKTGVRWADALSISVRPVITYWFMALYCAAKTAAFAAAVTA 120

Query: 121 EGMFNSDPLTLLSPFTQEIIACILGFWYTDKIVQKKK 157
              + +  L   +   Q + A +L FW+  ++  + +
Sbjct: 121 GAGWGTAILHAWTEADQALWAGVLNFWFLGRVFDRVR 157


>gi|152980935|ref|YP_001354477.1| hypothetical protein mma_2787 [Janthinobacterium sp. Marseille]
 gi|151281012|gb|ABR89422.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 158

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 64/157 (40%), Gaps = 20/157 (12%)

Query: 6   LAGGLFRFLLRFIPSGFERIVDVVSEYLTKKQSIEYDKLKLEMAKNDSSTQLDLAEIKAG 65
           LA  + ++L R    G E           + +++E++KL+     ++     D A     
Sbjct: 16  LAPEILKWLDRKGERGHELA--------MQDKALEFEKLRGAQRLSEIGAGADAAWNVGA 67

Query: 66  IEELKIDKPIRLARIEAQKVKSGVKWVDGFTALIRPLTTFFWIIVY-----PLLVWWSVK 120
           IE L+         +  Q  K+GV+W D  +  +RP+ T++++ +Y              
Sbjct: 68  IETLREA-------VRTQGEKTGVRWADALSISVRPVITYWFMALYCAAKTAAFAAAVTA 120

Query: 121 EGMFNSDPLTLLSPFTQEIIACILGFWYTDKIVQKKK 157
              + +  L   +   Q + A +L FW+  ++  + +
Sbjct: 121 GASWGTAILHAWTEADQALWAGVLNFWFLGRVFDRVR 157


>gi|255020358|ref|ZP_05292426.1| hypothetical protein ACA_2176 [Acidithiobacillus caldus ATCC 51756]
 gi|254970278|gb|EET27772.1| hypothetical protein ACA_2176 [Acidithiobacillus caldus ATCC 51756]
          Length = 158

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 64/155 (41%), Gaps = 20/155 (12%)

Query: 6   LAGGLFRFLLRFIPSGFERIVDVVSEYLTKKQSIEYDKLKLEMAKNDSSTQLDLAEIKAG 65
           LA  + ++L R      E           + +++E++KL+      +     D A     
Sbjct: 16  LAPEILKWLDRKGERSHELA--------MQDKALEFEKLRGAQRMAEIGAGADAAWNVGA 67

Query: 66  IEELKIDKPIRLARIEAQKVKSGVKWVDGFTALIRPLTTFFWIIVY-----PLLVWWSVK 120
           IE L+         + AQ  +SGV+W D  +A +RP+ T++++ +Y              
Sbjct: 68  IETLREA-------VAAQGQRSGVRWADALSASVRPVITYWFMALYCSAKTAAFAAAVTA 120

Query: 121 EGMFNSDPLTLLSPFTQEIIACILGFWYTDKIVQK 155
              + +  L   +   Q + A +L FW+  ++ ++
Sbjct: 121 GAGWGAAILHAWTDADQALWAGVLNFWFLGRVFER 155


>gi|300697168|ref|YP_003747829.1| hypothetical protein RCFBP_mp10636 [Ralstonia solanacearum
           CFBP2957]
 gi|299073892|emb|CBJ53423.1| conserved protein of unknown function (fragment) [Ralstonia
           solanacearum CFBP2957]
          Length = 123

 Score = 90.2 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 54/129 (41%), Gaps = 12/129 (9%)

Query: 34  TKKQSIEYDKLKLEMAKNDSSTQLDLAEIKAGIEELKIDKPIRLARIEAQKVKSGVKWVD 93
            + +++E +K++      +     D A     IE L+         I AQ   SGV W D
Sbjct: 1   MQDKALELEKVRGAQRMAEIGASADAAWNTGAIEALRDS-------ITAQGQTSGVPWAD 53

Query: 94  GFTALIRPLTTFFWIIVYPLLVWWSVKEGM-----FNSDPLTLLSPFTQEIIACILGFWY 148
             +  +RP+ T++++ +Y      +    +     + +  L   +   Q + A +L FW+
Sbjct: 54  ALSITVRPVITYWFMALYCAAKTAAFAGAITAGAGWGAATLQAWTEADQALWAGVLNFWF 113

Query: 149 TDKIVQKKK 157
             ++  + +
Sbjct: 114 LGRVFDRAR 122


>gi|315122322|ref|YP_004062811.1| hypothetical protein CKC_02870 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495724|gb|ADR52323.1| hypothetical protein CKC_02870 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 55

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/54 (79%), Positives = 49/54 (90%), Gaps = 3/54 (5%)

Query: 65  GIEELKIDKPIRLARIEAQKVKSGVKWVDGFTALIRPLTTFFWIIVYPLLVWWS 118
           GIEELK+D+PIRLARI+AQKVKSGVKW+DGF ALIRPLTTFFWIIV+    +WS
Sbjct: 2   GIEELKVDQPIRLARIKAQKVKSGVKWIDGFNALIRPLTTFFWIIVFR---YWS 52


>gi|315122323|ref|YP_004062812.1| hypothetical protein CKC_02875 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495725|gb|ADR52324.1| hypothetical protein CKC_02875 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 40

 Score = 71.3 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/39 (69%), Positives = 34/39 (87%)

Query: 119 VKEGMFNSDPLTLLSPFTQEIIACILGFWYTDKIVQKKK 157
           +K G+F+  PL++LSPF Q+IIACILGFW TDKIVQKK+
Sbjct: 1   MKGGIFDRSPLSILSPFEQDIIACILGFWCTDKIVQKKR 39


>gi|53802898|ref|YP_115401.1| hypothetical protein MCA3014 [Methylococcus capsulatus str. Bath]
 gi|53756659|gb|AAU90950.1| conserved hypothetical protein [Methylococcus capsulatus str. Bath]
          Length = 98

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 7/78 (8%)

Query: 34  TKKQSIEYDKLKLEMAKNDSSTQLDLAEIKAGIEELKIDKPIRLARIEAQKVKSGVKWVD 93
            + +++E++K +      +     D A     IE L+         + AQ  +S V+W D
Sbjct: 11  MRDKALEFEKRRGAQRMAEIGAGGDAAWNTGAIETLREA-------VAAQGQRSDVRWAD 63

Query: 94  GFTALIRPLTTFFWIIVY 111
             +  +RP+ T ++  +Y
Sbjct: 64  ALSVSVRPMITCWFRALY 81


>gi|315122321|ref|YP_004062810.1| hypothetical protein CKC_02865 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
 gi|313495723|gb|ADR52322.1| hypothetical protein CKC_02865 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
          Length = 45

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/50 (54%), Positives = 32/50 (64%), Gaps = 5/50 (10%)

Query: 6  LAGGLFRFLLRFIPSGFERIVDVVSEYLTKKQSIEYDKLKLEMAKNDSST 55
          + GGLF   LRF PS F    D V EYL +KQSIEYDK+K E  +  S+T
Sbjct: 1  MQGGLFS-ALRFFPSVF----DGVLEYLMQKQSIEYDKMKPEQTRIQSAT 45


>gi|91205650|ref|YP_538005.1| hypothetical protein RBE_0835 [Rickettsia bellii RML369-C]
 gi|157826893|ref|YP_001495957.1| hypothetical protein A1I_02745 [Rickettsia bellii OSU 85-389]
 gi|91069194|gb|ABE04916.1| unknown [Rickettsia bellii RML369-C]
 gi|157802197|gb|ABV78920.1| hypothetical protein A1I_02745 [Rickettsia bellii OSU 85-389]
          Length = 152

 Score = 42.4 bits (98), Expect = 0.019,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 6/93 (6%)

Query: 68  ELKIDKPIRLARIEAQKVKSGVKWVDGFTALIRPLTTFFWIIVYPLLVWWSVKEGMFNSD 127
           EL I + +          KSGV WVD     +RP+  + +  +Y  +V +   + + +S 
Sbjct: 53  ELTISQEMAEQHALYSTYKSGVSWVDALNGSVRPVLAYSFFAMY-GIVKYVQYKSLKSSA 111

Query: 128 PLT-----LLSPFTQEIIACILGFWYTDKIVQK 155
            L      L +   Q I A I+ F++  +  +K
Sbjct: 112 LLVQYLDILWTIDDQTIFAGIISFYFGQRTFKK 144


>gi|67459398|ref|YP_247022.1| hypothetical protein RF_1006 [Rickettsia felis URRWXCal2]
 gi|67004931|gb|AAY61857.1| unknown [Rickettsia felis URRWXCal2]
          Length = 150

 Score = 42.4 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 54/150 (36%), Gaps = 13/150 (8%)

Query: 10  LFRFLLRFIPSGFERIVDVVSEYLTKKQSIEYDKLKLEMAKNDSSTQLDLAEIKAGIEEL 69
           LF  +  FI S    I+ +  +   KK  I     ++   K + S             EL
Sbjct: 4   LFAAITGFISSIIPEILKIYKDINDKKHEINILDRQIANNKLNQSKT---------FTEL 54

Query: 70  KIDKPIRLARIEAQKVKSGVKWVDGFTALIRPLTTFFWIIVYPLLVWWSVK----EGMFN 125
            I + +          KSGV WVD     +RP+  + +  +Y  + +   K      +  
Sbjct: 55  TISQEMAEQYSLYSTYKSGVSWVDALNGSVRPVLAYSFFAMYGGVKYVQYKSLKSSALLV 114

Query: 126 SDPLTLLSPFTQEIIACILGFWYTDKIVQK 155
                L S   Q I A I+ F++  +   K
Sbjct: 115 EYLDILWSIEDQTIFAGIISFYFGQRTFSK 144


>gi|148284521|ref|YP_001248611.1| hypothetical protein OTBS_0926 [Orientia tsutsugamushi str.
           Boryong]
 gi|146739960|emb|CAM79992.1| hypothetical protein OTBS_0926 [Orientia tsutsugamushi str.
           Boryong]
          Length = 174

 Score = 42.0 bits (97), Expect = 0.027,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 38/79 (48%), Gaps = 6/79 (7%)

Query: 85  VKSGVKWVDGFTALIRPLTTFFWIIVYPLL-----VWWSVKEGMFNSDPLTL-LSPFTQE 138
            K+G+ W+D     +RP+  + +  +Y ++        +++  ++ ++ + +  +   Q 
Sbjct: 71  YKTGIAWIDAINGTVRPILAYSFFFMYAIIKIVQYKSLTIQSTIYITEFINILWTSDDQA 130

Query: 139 IIACILGFWYTDKIVQKKK 157
           I A I+ F++  +   K +
Sbjct: 131 IFAGIISFYFGQRTFSKLR 149


>gi|189183175|ref|YP_001936960.1| hypothetical protein OTT_0268 [Orientia tsutsugamushi str. Ikeda]
 gi|189179946|dbj|BAG39726.1| hypothetical protein OTT_0268 [Orientia tsutsugamushi str. Ikeda]
          Length = 174

 Score = 40.9 bits (94), Expect = 0.068,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 38/79 (48%), Gaps = 6/79 (7%)

Query: 85  VKSGVKWVDGFTALIRPLTTFFWIIVYPLL-----VWWSVKEGMFNSDPLTL-LSPFTQE 138
            K+G+ W+D     +RP+  + +  +Y ++        +++  ++ ++ + +  +   Q 
Sbjct: 71  YKTGIVWIDAINGTVRPILAYSFFFMYAIIKIIQYKSLTIQSKIYITEFINILWTSDDQA 130

Query: 139 IIACILGFWYTDKIVQKKK 157
           I A I+ F++  +   K +
Sbjct: 131 IFAGIISFYFGQRTFSKLR 149


>gi|48843800|gb|AAT47059.1| putative mutator-like transposase [Oryza sativa Japonica Group]
          Length = 1403

 Score = 37.0 bits (84), Expect = 0.99,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 56/153 (36%), Gaps = 9/153 (5%)

Query: 3   QSFLAGGLFRFLLRFIPSGFERIVDVVSEYLTKKQSIEYDK--LKLEMAK-----NDSST 55
           Q F      +  ++       RI + + E     +++   K  L+    K      +  +
Sbjct: 662 QVFYVPDPSKLRVKKGRRQTRRIRNDMDESEAGGRTLRCSKCDLRGHTYKKCPKNAEVPS 721

Query: 56  QLDLAEIKAGIEELKIDKPIRLARIEAQKVKSGVKWVDGFT-ALIRPLTTFFWIIVYPLL 114
             D +      + +  D P  L R   +  +S +  V+G      RP T+  W+ V P  
Sbjct: 722 GADASPSGHSSDGMAYDTPALLNREIDRNHRSFLSAVEGAQLGTFRPRTSREWLRVDPRH 781

Query: 115 VWWSVKEGMFNSDPLTLLSPFTQEIIACILGFW 147
           V W V+    + DP        + ++A ++  W
Sbjct: 782 VPWLVEAAADDRDPAKRW-DADRSLLAALVDRW 813


>gi|42491376|gb|AAS16882.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1433

 Score = 37.0 bits (84), Expect = 0.99,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 56/153 (36%), Gaps = 9/153 (5%)

Query: 3   QSFLAGGLFRFLLRFIPSGFERIVDVVSEYLTKKQSIEYDK--LKLEMAK-----NDSST 55
           Q F      +  ++       RI + + E     +++   K  L+    K      +  +
Sbjct: 662 QVFYVPDPSKLRVKKGRRQTRRIRNDMDESEAGGRTLRCSKCDLRGHTYKKCPKNAEVPS 721

Query: 56  QLDLAEIKAGIEELKIDKPIRLARIEAQKVKSGVKWVDGFT-ALIRPLTTFFWIIVYPLL 114
             D +      + +  D P  L R   +  +S +  V+G      RP T+  W+ V P  
Sbjct: 722 GADASPSGHSSDGMAYDTPALLNREIDRNHRSFLSAVEGAQLGTFRPRTSREWLRVDPRH 781

Query: 115 VWWSVKEGMFNSDPLTLLSPFTQEIIACILGFW 147
           V W V+    + DP        + ++A ++  W
Sbjct: 782 VPWLVEAAADDRDPAKRW-DADRSLLAALVDRW 813


>gi|46127679|ref|XP_388393.1| hypothetical protein FG08217.1 [Gibberella zeae PH-1]
          Length = 447

 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 37/64 (57%)

Query: 34  TKKQSIEYDKLKLEMAKNDSSTQLDLAEIKAGIEELKIDKPIRLARIEAQKVKSGVKWVD 93
            ++++ E+++++LE  +++ S Q   AE  + +E LK     +  ++E QK+++ +K  +
Sbjct: 309 LQEKAAEFERVRLEQLEDEESFQEAKAEFASEVESLKQKIKDQENKMEQQKLEAELKAAE 368

Query: 94  GFTA 97
              A
Sbjct: 369 DLKA 372


>gi|315122366|ref|YP_004062855.1| hypothetical protein CKC_03090 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495768|gb|ADR52367.1| hypothetical protein CKC_03090 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 52

 Score = 35.1 bits (79), Expect = 3.2,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 28/47 (59%), Gaps = 4/47 (8%)

Query: 114 LVWWSVKEGMFNS----DPLTLLSPFTQEIIACILGFWYTDKIVQKK 156
            +W  ++  +F+       L  +  + Q+II+ +LGFW++D +V+K+
Sbjct: 5   FIWQGIESELFDQKTIATLLVTILEYGQDIISSVLGFWFSDGVVKKE 51


>gi|308494977|ref|XP_003109677.1| CRE-PGP-3 protein [Caenorhabditis remanei]
 gi|308245867|gb|EFO89819.1| CRE-PGP-3 protein [Caenorhabditis remanei]
          Length = 1317

 Score = 34.7 bits (78), Expect = 4.0,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 5/100 (5%)

Query: 20  SGFERIVDVVSEYLTKKQSIEYDKLKLEMAKNDSSTQLDLAEIKAGIEELKIDKPIRLAR 79
             F R      E   ++QS+  D  +L  +   ++TQ+   EI++  EE+  +  +  + 
Sbjct: 665 RLFHRDSVTSDEEREQQQSLARDSTRLRQSMISTTTQVPEWEIESAREEMIEEGAMEASL 724

Query: 80  IE----AQKVKSGVKWVDGFTALIRPLTTFFWIIVYPLLV 115
           ++    A      V     F   IR LT   + IVY  L 
Sbjct: 725 VDIFKYASPEMRNVAIALVF-TFIRGLTWPAFSIVYGQLF 763


>gi|312385491|gb|EFR29977.1| hypothetical protein AND_00724 [Anopheles darlingi]
          Length = 539

 Score = 34.7 bits (78), Expect = 4.4,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 39/80 (48%), Gaps = 4/80 (5%)

Query: 4   SFLAGGLFRFLLRFIPSGFERIVDVVSEYLTKKQSIEYDKLKLEMAKNDSSTQLDLAEIK 63
           SF+ G     LL+  PS  +  +      L +K S E+ +LK  + + + + + + A   
Sbjct: 146 SFVLGETRSLLLQQFPSLAQASMSAEEMRLLQKLSSEHGQLKESLQRANVAMRKNFA--- 202

Query: 64  AGIEELKIDKPIRLARIEAQ 83
             I++L+ +   R  ++E++
Sbjct: 203 -SIQQLQDETKTRRCQLESR 221


>gi|122070617|sp|Q5P7I9|SURA_AZOSE RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
          Length = 439

 Score = 34.7 bits (78), Expect = 4.7,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 37/66 (56%), Gaps = 3/66 (4%)

Query: 26  VDVVSEYLTKKQSIEYDKLKLEMAKNDSSTQLDLAEIKAGIEELKIDKPIRLARIEAQKV 85
            DV+   L ++  +E  + +L++A+ ++S Q+D A ++  I  +     + +A+++A   
Sbjct: 73  ADVLERQLLERLVLE--RAQLQLAR-ETSLQVDEATLERAIARIAESNRLTIAQLQAALE 129

Query: 86  KSGVKW 91
           K GV W
Sbjct: 130 KDGVSW 135


>gi|331251185|ref|XP_003338193.1| hypothetical protein PGTG_19801 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309317183|gb|EFP93774.1| hypothetical protein PGTG_19801 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 491

 Score = 34.7 bits (78), Expect = 4.9,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 9/57 (15%)

Query: 94  GFTALIRPLTTFFWIIVYPLLVWWSVKEGMFNSDPLTLLSPFTQEIIACILGFWYTD 150
           GF  L   + +FF ++   +  WW+   G+     +TLLS      I  ++GFW+ D
Sbjct: 351 GFNTLASKIASFFLMMSLIVAFWWAT--GLVTR-LMTLLS------IGLLIGFWFID 398


>gi|56476034|ref|YP_157623.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Aromatoleum
           aromaticum EbN1]
 gi|56312077|emb|CAI06722.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Aromatoleum
           aromaticum EbN1]
          Length = 454

 Score = 34.3 bits (77), Expect = 5.5,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 37/66 (56%), Gaps = 3/66 (4%)

Query: 26  VDVVSEYLTKKQSIEYDKLKLEMAKNDSSTQLDLAEIKAGIEELKIDKPIRLARIEAQKV 85
            DV+   L ++  +E  + +L++A+ ++S Q+D A ++  I  +     + +A+++A   
Sbjct: 88  ADVLERQLLERLVLE--RAQLQLAR-ETSLQVDEATLERAIARIAESNRLTIAQLQAALE 144

Query: 86  KSGVKW 91
           K GV W
Sbjct: 145 KDGVSW 150


>gi|194332967|ref|YP_002014827.1| membrane-associated zinc metalloprotease [Prosthecochloris
           aestuarii DSM 271]
 gi|194310785|gb|ACF45180.1| membrane-associated zinc metalloprotease [Prosthecochloris
           aestuarii DSM 271]
          Length = 453

 Score = 34.3 bits (77), Expect = 6.2,   Method: Composition-based stats.
 Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 16/128 (12%)

Query: 33  LTKKQSIEYDKLK--------LEMA-KNDSSTQLDLAEIKAGIEELKIDK--PIRLARIE 81
           L +  SI++ KL         +E   K  S+T +   +I  G E+ +     PI++ARI 
Sbjct: 312 LKQTLSIDHRKLNPVEATFYGIEQTWKMTSTTVMGFGKILTGKEDFRKSMGGPIKIARIA 371

Query: 82  AQKVKSGVKWVDGFTALIRPLTTFFWIIVYPLLVWW----SVKEGMFNSD-PLTLLSPFT 136
            Q  + G+     F AL+     F  I+  P L       +  EG+   + P+T+     
Sbjct: 372 NQSAEQGISSFLYFVALLSISLAFINILPIPALDGGQFVMNAVEGVMGREIPITIKMRIQ 431

Query: 137 QEIIACIL 144
           Q  +A +L
Sbjct: 432 QVGMALLL 439


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.313    0.130    0.361 

Lambda     K      H
   0.267   0.0402    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,611,814,892
Number of Sequences: 14124377
Number of extensions: 91473367
Number of successful extensions: 389861
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 69
Number of HSP's that attempted gapping in prelim test: 389725
Number of HSP's gapped (non-prelim): 138
length of query: 157
length of database: 4,842,793,630
effective HSP length: 119
effective length of query: 38
effective length of database: 3,161,992,767
effective search space: 120155725146
effective search space used: 120155725146
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.0 bits)
S2: 75 (33.5 bits)