RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254781199|ref|YP_003065612.1| hypothetical protein CLIBASIA_05530 [Candidatus Liberibacter asiaticus str. psy62] (157 letters) >1zq7_A Hypothetical protein MM0484; X-RAY, NESG, MAR9, Q8PZK8, structural genomics, PSI, protein structure initiative; 2.11A {Methanosarcina mazei} (A:) Length = 207 Score = 29.4 bits (66), Expect = 0.23 Identities = 10/35 (28%), Positives = 12/35 (34%) Query: 52 DSSTQLDLAEIKAGIEELKIDKPIRLARIEAQKVK 86 DS L KAG+ K + E Q K Sbjct: 152 DSIDFLSHTCXKAGLSPDAWVKGAEVYCFEGQIFK 186 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006) Length = 120 Score = 26.3 bits (58), Expect = 1.9 Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 5/29 (17%) Query: 16 RFIPSGFERIVDVVSEY--LTKKQSIEYD 42 + E +V+VV Y +T + ++ D Sbjct: 4 DVMS--IESLVEVVF-YRGMTMQVAVPRD 29 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} (F:1-76) Length = 76 Score = 25.8 bits (56), Expect = 2.7 Identities = 10/33 (30%), Positives = 20/33 (60%), Gaps = 3/33 (9%) Query: 35 KKQSIEYDKLKLEMAKNDSSTQLDLAEIKAGIE 67 +KQ+++ + L++ +DS+ L IKA +E Sbjct: 18 EKQALKKLQASLKLYADDSAPAL---AIKATME 47 >3drf_A Oligopeptide-binding protein OPPA; oligo-peptide binding, voluminous binding cavity, venus FLY- trap, peptide binding protein; 1.30A {Lactococcus lactis} PDB: 3drg_A 3drh_A 3dri_A 3drj_A 3drk_A 3fto_A (A:76-104,A:156-199) Length = 73 Score = 25.7 bits (56), Expect = 3.0 Identities = 12/33 (36%), Positives = 19/33 (57%) Query: 62 IKAGIEELKIDKPIRLARIEAQKVKSGVKWVDG 94 IK G ++ +DK + A I +K SG+ + DG Sbjct: 7 IKGGAADVALDKESKTATITLRKTISGITFPDG 39 >2bc4_B HLA class II histocompatibility antigen, DM beta chain; MHC class II, immune system; HET: NDG BMA; 2.27A {Homo sapiens} PDB: 1hdm_B 1k8i_B* (B:1-84) Length = 84 Score = 25.6 bits (56), Expect = 3.7 Identities = 8/22 (36%), Positives = 10/22 (45%) Query: 124 FNSDPLTLLSPFTQEIIACILG 145 FN D LT P ++ C G Sbjct: 28 FNKDLLTCWDPEENKMAPCEFG 49 >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A (A:761-861) Length = 101 Score = 25.2 bits (55), Expect = 4.1 Identities = 11/46 (23%), Positives = 25/46 (54%), Gaps = 6/46 (13%) Query: 45 KLEMAKNDSSTQLDLAEIKAGIEELKIDKPIRLARIEAQKVKSGVK 90 +++ + +++L +A EL++ K +LA +EA+K K + Sbjct: 1 RVKKVR-----EMELIYARA-QLELEVSKAQQLANVEAKKFKEMTE 40 >2kci_A Putative acyl carrier protein; alpha, ACP, PCP, structural genomics, unknown function, PSI- 2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 2kjs_A* (A:1-63) Length = 63 Score = 24.2 bits (53), Expect = 9.4 Identities = 6/49 (12%), Positives = 15/49 (30%), Gaps = 6/49 (12%) Query: 22 FERIVDVVSEYLTKKQSIEYDKLKLEMAKND--SSTQLDLAEIKAGIEE 68 + + + + + L E + ND + L + +E Sbjct: 4 LDALTPIFRQVF----DDDSIVLTRETSANDIDAWDSLSHMNLIVSLEV 48 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.324 0.141 0.425 Gapped Lambda K H 0.267 0.0555 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,230,325 Number of extensions: 51187 Number of successful extensions: 137 Number of sequences better than 10.0: 1 Number of HSP's gapped: 137 Number of HSP's successfully gapped: 14 Length of query: 157 Length of database: 4,956,049 Length adjustment: 81 Effective length of query: 76 Effective length of database: 2,217,844 Effective search space: 168556144 Effective search space used: 168556144 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 51 (23.8 bits)