RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781199|ref|YP_003065612.1| hypothetical protein
CLIBASIA_05530 [Candidatus Liberibacter asiaticus str. psy62]
         (157 letters)



>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 41.1 bits (95), Expect = 1e-04
 Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 7/35 (20%)

Query: 35 KKQSIEYDKLK--LEMAKNDSSTQLDLAEIKAGIE 67
          +KQ+++  KL+  L++  +DS+    LA IKA +E
Sbjct: 18 EKQALK--KLQASLKLYADDSAPA--LA-IKATME 47


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 33.4 bits (76), Expect = 0.023
 Identities = 20/104 (19%), Positives = 33/104 (31%), Gaps = 31/104 (29%)

Query: 12  RFLLRFIP--SGFERIVDVVSEYLTK----------KQSIEYDKLKLEMAKNDSSTQLDL 59
           +F  RF+P  S F       S  L            K ++ ++   +++   D+    DL
Sbjct: 415 KFSNRFLPVASPFH------SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDL 468

Query: 60  AEIKAGIEELKIDKPIRLARIEAQKVKSGVKWVDGFTALIRPLT 103
             +   I E       R+     +     VKW    T      T
Sbjct: 469 RVLSGSISE-------RIVDCIIRLP---VKWE---TTTQFKAT 499



 Score = 26.8 bits (59), Expect = 2.4
 Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 21/68 (30%)

Query: 91  WVDGF-TALIRPLTTFFWIIV-----YPLLVWW------SVKEGMFNSDPLTLLS----- 133
           W + F  ++ + +T  F+I V     YP           S++       P  +LS     
Sbjct: 289 W-ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENN--EGVPSPMLSISNLT 345

Query: 134 -PFTQEII 140
               Q+ +
Sbjct: 346 QEQVQDYV 353


>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel,
           transferase; HET: PEP; 2.30A {Aeropyrum pernix}
          Length = 276

 Score = 27.9 bits (61), Expect = 0.98
 Identities = 8/30 (26%), Positives = 14/30 (46%)

Query: 46  LEMAKNDSSTQLDLAEIKAGIEELKIDKPI 75
            E A +D+  QL   E    + EL+  + +
Sbjct: 247 PEEALSDAKQQLTPGEFARLMGELRWHRLL 276


>1zy9_A Alpha-galactosidase; TM1192, structural genomics, joint center for
           structural genomics, JCSG, protein structure initiative,
           PSI, hydrolase; 2.34A {Thermotoga maritima} SCOP:
           b.30.5.11 c.1.8.13
          Length = 564

 Score = 26.7 bits (58), Expect = 2.7
 Identities = 11/67 (16%), Positives = 21/67 (31%), Gaps = 2/67 (2%)

Query: 91  WVDGFTALIRPLTTFFWIIVYPLLV--WWSVKEGMFNSDPLTLLSPFTQEIIACILGFWY 148
             D    ++R   T        L       +   +  SD L+L+    ++++   L    
Sbjct: 435 LNDPDCLILREEKTDLTQKEKELYSYTCGVLDNMIIESDDLSLVRDHGKKVLKETLELLG 494

Query: 149 TDKIVQK 155
               VQ 
Sbjct: 495 GRPRVQN 501


>2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase;
          1.75A {Corynebacterium glutamicum}
          Length = 738

 Score = 26.3 bits (58), Expect = 3.6
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 24 RIVDVVSEYLTKKQSIEYDKLKL-EMAKNDSSTQLDLAEIKAGIEELK 70
          RI+    E LT+ Q +     +L E+AK   +  + L  I A + +LK
Sbjct: 45 RILAQFPERLTEDQKVGNALAELGELAKTPEANIIKLPNISASVPQLK 92


>1itw_A Isocitrate dehydrogenase; greece KEY motif, oxidoreductase; HET:
          ICT; 1.95A {Azotobacter vinelandii} SCOP: c.77.1.2 PDB:
          1j1w_A*
          Length = 741

 Score = 26.3 bits (58), Expect = 3.6
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 24 RIVDVVSEYLTKKQSIEYDKLKL-EMAKNDSSTQLDLAEIKAGIEELK 70
          R++    EYLT  Q I  D  +L ++A    +  + L  I A + +LK
Sbjct: 47 RLIATFPEYLTDTQKISDDLAELGKLATTPDANIIKLPNISASVPQLK 94


>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein
          structure initiative, midwest center for structural
          genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} SCOP:
          c.66.1.47 PDB: 3a25_A* 3a26_A*
          Length = 278

 Score = 25.8 bits (56), Expect = 4.0
 Identities = 9/29 (31%), Positives = 16/29 (55%)

Query: 1  MIQSFLAGGLFRFLLRFIPSGFERIVDVV 29
           I+  L+  L   L++ +P  + RI DV+
Sbjct: 9  RIREILSKELPEELVKLLPKRWVRIGDVL 37


>3ddm_A Putative mandelate racemase/muconate lactonizing enzyme;
          structural genomics, NYSGXRC, target 9284B, enolase
          family, PSI-2; 2.60A {Bordetella bronchiseptica}
          Length = 392

 Score = 25.4 bits (55), Expect = 6.4
 Identities = 4/32 (12%), Positives = 14/32 (43%)

Query: 48 MAKNDSSTQLDLAEIKAGIEELKIDKPIRLAR 79
          M+    +  +  A ++A +    +  P++ + 
Sbjct: 1  MSLTRDAASITPARVRAHVFRYPVSTPVKTSF 32


>3kio_B Ribonuclease H2 subunit B; aicardi-goutieres syndrome, RNAse H2,
           protein complex, autoimmune disease, endonuclease,
           hydrolase, metal-binding; 2.90A {Mus musculus}
          Length = 332

 Score = 24.9 bits (54), Expect = 7.6
 Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 6/77 (7%)

Query: 25  IVDVVSEYLTKKQSI------EYDKLKLEMAKNDSSTQLDLAEIKAGIEELKIDKPIRLA 78
           + D +S++L   +           KLKL     ++         K      K  K     
Sbjct: 245 LSDDLSKFLKLPEPPASLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQ 304

Query: 79  RIEAQKVKSGVKWVDGF 95
           +  A+  KSG+K +D F
Sbjct: 305 KALAKVDKSGMKSIDAF 321


>1zq7_A Hypothetical protein MM0484; X-RAY, NESG, MAR9, Q8PZK8, structural
           genomics, PSI, protein structure initiative; 2.11A
           {Methanosarcina mazei} SCOP: d.309.1.1
          Length = 207

 Score = 24.8 bits (54), Expect = 9.3
 Identities = 10/35 (28%), Positives = 13/35 (37%)

Query: 52  DSSTQLDLAEIKAGIEELKIDKPIRLARIEAQKVK 86
           DS   L    +KAG+      K   +   E Q  K
Sbjct: 152 DSIDFLSHTCMKAGLSPDAWVKGAEVYCFEGQIFK 186


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.324    0.141    0.425 

Gapped
Lambda     K      H
   0.267   0.0603    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,412,377
Number of extensions: 62483
Number of successful extensions: 203
Number of sequences better than 10.0: 1
Number of HSP's gapped: 203
Number of HSP's successfully gapped: 15
Length of query: 157
Length of database: 5,693,230
Length adjustment: 85
Effective length of query: 72
Effective length of database: 3,632,490
Effective search space: 261539280
Effective search space used: 261539280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.5 bits)