RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781199|ref|YP_003065612.1| hypothetical protein
CLIBASIA_05530 [Candidatus Liberibacter asiaticus str. psy62]
         (157 letters)



>d1itwa_ c.77.1.2 (A:) Monomeric isocitrate dehydrogenase
          {Azotobacter vinelandii [TaxId: 354]}
          Length = 740

 Score = 26.3 bits (58), Expect = 1.4
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 24 RIVDVVSEYLTKKQSIEYDKLKL-EMAKNDSSTQLDLAEIKAGIEELK 70
          R++    EYLT  Q I  D  +L ++A    +  + L  I A + +LK
Sbjct: 46 RLIATFPEYLTDTQKISDDLAELGKLATTPDANIIKLPNISASVPQLK 93


>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793
          {Pyrococcus horikoshii [TaxId: 53953]}
          Length = 260

 Score = 25.1 bits (54), Expect = 2.6
 Identities = 6/16 (37%), Positives = 11/16 (68%)

Query: 14 LLRFIPSGFERIVDVV 29
          L++ +P  + RI DV+
Sbjct: 4  LVKLLPKRWVRIGDVL 19


>d1zq7a1 d.309.1.1 (A:1-199) Hypothetical protein MM0484
           {Methanosarcina mazei [TaxId: 2209]}
          Length = 199

 Score = 24.8 bits (54), Expect = 3.5
 Identities = 10/35 (28%), Positives = 13/35 (37%)

Query: 52  DSSTQLDLAEIKAGIEELKIDKPIRLARIEAQKVK 86
           DS   L    +KAG+      K   +   E Q  K
Sbjct: 152 DSIDFLSHTCMKAGLSPDAWVKGAEVYCFEGQIFK 186


>d1hdmb2 d.19.1.1 (B:3-87) Class II MHC beta chain, N-terminal
           domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}
          Length = 85

 Score = 24.5 bits (53), Expect = 4.7
 Identities = 7/19 (36%), Positives = 9/19 (47%)

Query: 124 FNSDPLTLLSPFTQEIIAC 142
           FN D LT   P   ++  C
Sbjct: 26  FNKDLLTCWDPEENKMAPC 44


>d1k8ib2 d.19.1.1 (B:1-94) Class II MHC beta chain, N-terminal
           domain {Mouse (Mus musculus), H2-DM [TaxId: 10090]}
          Length = 94

 Score = 23.7 bits (51), Expect = 7.4
 Identities = 8/26 (30%), Positives = 10/26 (38%)

Query: 124 FNSDPLTLLSPFTQEIIACILGFWYT 149
           FN D L    P   +I+ C  G    
Sbjct: 27  FNKDLLACWDPDVGKIVPCEFGVLSR 52


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.141    0.425 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 616,271
Number of extensions: 27174
Number of successful extensions: 67
Number of sequences better than 10.0: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 10
Length of query: 157
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 79
Effective length of database: 1,336,656
Effective search space: 105595824
Effective search space used: 105595824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.2 bits)