HHsearch alignment for GI: 254781202 and conserved domain: PHA02006
>PHA02006 virion protein.
Probab=97.92 E-value=0.0028 Score=42.59 Aligned_cols=534 Identities=16% Similarity=0.128 Sum_probs=260.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCCC----CHHHCCCCCCCCCHHHHHHCCH---HHHHHHH-------HHHHHHH
Q ss_conf 899899999999999999999999861798----4002681454168799951368---9899999-------9752087
Q gi|254781202|r 159 TQNEQASRLVKQYFETQRELHSQAHEAGLD----YKFFENRIPQPMSVDKLRATKK---DDFVRSM-------LDWLDLS 224 (864)
Q Consensus 159 tgn~~a~~~A~~~~~~~e~~r~~~N~aG~~----Igkl~~~~pq~hd~~~i~~a~~---~~W~~~i-------~~~lD~~ 224 (864)
T Consensus 716 n~~p~i~~lad~sd~~hg~~g~~ar~agvrGFEDFtpRPGYFHRsWn~sk~~a~e~a~~g~vr~llsEsV~RGi~gldk~ 795 (1337)
T PHA02006 716 NLPPTIKALADRSDEIHGLMGQRAREAGVRGFEDFAPRPGYFHRSWNWSKMAQMDEAAPGLARRAISEAVFRGIPGLDRA 795 (1337)
T ss_pred CCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCHHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 98858998751116777788888887054542105899871120034899999987554689999999998146676844
Q ss_pred HH------------CCCCCC---------CCCHHHHHHHHHHHHHHHHC--CCC----CCCCCCCHHHHHHCCCCCEE--
Q ss_conf 51------------175688---------48989999998876323311--776----56687521354311457617--
Q gi|254781202|r 225 RY------------KDIDGT---------PLSRSEIASFVGEVFAERVR--STS----FKDPSIPSSEVGVKREFERV-- 275 (864)
Q Consensus 225 ~~------------~~~~G~---------~~~~~~~~~~L~~vy~~i~t--~g~----~~~~~~~~~~~~~~~~~~R~-- 275 (864)
T Consensus 796 eAd~Ia~AivqR~rdkAsG~RseFMGAlGkaDT~fiR~~LeeA~vs~a~i~SIMgkIEQk~sdqGts----KYgK~RL~L 871 (1337)
T PHA02006 796 DADTIAQAIVQRARDRATGIRSEFMGAMGVADTAFIRQALEEANVSQAKFDSIMAKIEQKQSDQGTV----KYGKGRLSL 871 (1337)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCC----CCCCCCCCE
T ss_conf 5507999999998652035668776530443089999999974863452999999997612012523----346653330
Q ss_pred ---EEE-CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHCCC
Q ss_conf ---884-0967899999960887768999998887445567799985799689999999999986111000001220000
Q gi|254781202|r 276 ---FHF-KDSQAHMDYMEHFGVSTNVNTILTSELASLSKDIVIARELGPNADSFVKQMIVQTIANDQEASAGNKVLKDWL 351 (864)
Q Consensus 276 ---LhF-KDa~sw~~Y~~~fG~~~~~~~~m~~hi~~msrDIalm~~lGpNP~~~f~~l~~~~~~~~~~~~~~~~~~~~~~ 351 (864)
T Consensus 872 DMta~I~~dGtv-yrV~DlI--DrDLdRlmENY~~smsGRSALa~AG~~g-Da~ieAf~r~Y~~~~ak------L~---- 937 (1337)
T PHA02006 872 DMTAEINHNGTV-YRVQDLI--DRDLDRLMENYAGSMSGRSALARAGMPG-DSEIEAFIREYQREAAH------LG---- 937 (1337)
T ss_pred EEEEEECCCCEE-EEHHHHH--HHHHHHHHHHHCCCCCCHHHHHHCCCCC-CHHHHHHHHHHHHHHHH------CC----
T ss_conf 247897349748-8738756--4039999997433541177897658987-26699999999999863------58----
Q ss_pred HHHHHHHHHHHHHHHHHHHCC-C-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 148899899999999976257-8-76753899999989999999987522456641253899985012454038999996
Q gi|254781202|r 352 GRNKLEVRQEAMLQMWEVMRY-G-ETVENTGWANWMAGLRSAAGASMLGQHPIGALLEDGFISRQMLSRVGIDKEAIQRI 429 (864)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~g-~-~~p~n~~~a~~~a~lR~~~~~akLGgA~ISA~tD~~~i~~t~~~~~~~~~~~~~~l 429 (864)
T Consensus 938 ----~a~~~dlm~Qldgl~gDFTGnrP~~~~LG~~AQRaksla~aTML~aSGlwQvAEyaTmA~R----hGv~~t~kef~ 1009 (1337)
T PHA02006 938 ----TDKVQELTGQLRGVFGDFTGNVPREHQLGPVAQRASGLTSATMLGFSGVYQLAELATMAHR----QGVFNVMKAML 1009 (1337)
T ss_pred ----HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_conf ----1669999998754530034899962303647787665666667743118999999999987----40899999999
Q ss_pred HHC----------CCHHHHHHHHHHHHHHHHHHHH--HHHHHCCCCCC-HHHHHHHHH--------HHHHHCCHHHHHHH
Q ss_conf 413----------8054999999966799899999--99740266640-367999989--------99885243788865
Q gi|254781202|r 430 NKM----------PLKERMELLSDVGLYAEGVVAH--GRNMMEGSDAF-QIGHKLHSK--------MHKWSGAEYLDKKR 488 (864)
Q Consensus 430 ~~~----------~~~d~~~~a~~lGl~~E~~~~~--~~r~~~~~~~~-~~~~~~a~~--------~~r~SgL~~wT~~~ 488 (864)
T Consensus 1010 ~~fpG~v~g~~RrnPDLaDEl~tVlGLd---LArDVR~rPWkRQ~dafL~S~DT~~DR~LhaGkQAvP~LNgMKFIH~hQ 1086 (1337)
T PHA02006 1010 NSRMGDFVGAMRRNPDLADEMQTVLGLN---LANDIRMKPWKRQFDTFLASQDTFMDRFLHAGKQAVPVLNGMKFIHNWQ 1086 (1337)
T ss_pred HHCCHHHHHHHHCCCCHHHHHHHHHHHH---HHHHHCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 9684678777643962788999886111---4433106758887765532006899999970553532111236777667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCHHHHH
Q ss_conf 76769999999999997630021147732010678998617898899999841211135666410052332014457754
Q gi|254781202|r 489 ISSHALIVYNQIGRMTDTYASLKDLKADPRLDPSIKAFFKQLDDTDFTVIKRAKAMSSPDGYLYARTPSTIKNLKDADLR 568 (864)
Q Consensus 489 k~a~~~~~~~~la~l~~~~~~l~~~k~~d~l~~~~~~~l~GI~e~dW~i~r~a~~~~~~~~~~~~~t~~~i~~~~da~i~ 568 (864)
T Consensus 1087 sRmNANLtlNk~aRAA---------qGD~kAL~~lr~--Yg-~D~dW~~~~~a-----V~~nvty~G-------kNaqs- 1141 (1337)
T PHA02006 1087 SRMNANLTLNKVARAA---------QGDEAALRVLQQ--YG-KDVDWTPVLAR-----VRGYVTYRG-------RNAQS- 1141 (1337)
T ss_pred HHHCCCHHHHHHHHHH---------CCCHHHHHHHHH--HC-CCCCHHHHHHH-----HCCCCEECC-------CCCCC-
T ss_conf 6521320188888774---------266999999998--67-85245999998-----602506635-------65322-
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHC
Q ss_conf 43100022333320001123457024566666554211457788656889999999998653011114566543221000
Q gi|254781202|r 569 DLARMSDKIAYHRKKLKNSKTLSPEQRQELQQQLADLERKEINILKDKVSNKMHALVLDNVQTSVRGAMHTSLFDRQRLG 648 (864)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~kd~~~~~l~~~il~~~~~aV~~av~tp~~r~r~~~ 648 (864)
T Consensus 1142 ----------------mNW~~W~q~d----------------------V-d~vmN~alRiMDDsiLY--------GR--- 1171 (1337)
T PHA02006 1142 ----------------MNWGAWSQAD----------------------V-NTVMNTALRIMDDSLLY--------GR--- 1171 (1337)
T ss_pred ----------------CCCCCCCHHH----------------------H-HHHHHHHHHHHHHHHHC--------CC---
T ss_conf ----------------6767799788----------------------8-89999988873100301--------24---
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 24557875567899999877642999999999998742-24331134567789999999999999999999996389999
Q gi|254781202|r 649 LLTYKRGTRAGEALRMFQQFTTTPTGMFLNILDLSNSA-KMPKGASMALNHVWIQYSATMALAGIGVASIKALLRGEDPS 727 (864)
Q Consensus 649 ~~g~~~gT~~GE~~r~~~qFKsFp~a~~~~~~~r~~~~-~~~~~~~~~~~~~~a~~~~~~t~~G~~~~q~k~~l~Grdp~ 727 (864)
T Consensus 1172 -~GQgssFaRSqvGQILGQFRSF-VsFAhNKLLRGT~~nsG~~G--------lAsLlAfQYPlT~lMv~anearkG~~d~ 1241 (1337)
T PHA02006 1172 -VGQNSGFARSPVGQILGQFRSF-VAFAHNKLLRGTYENSGVLG--------VASLLAFQYPLTALMMGAKAAINGKFDT 1241 (1337)
T ss_pred -CCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHCCHHCCCHHH--------HHHHHHHHCCHHHHHHHHHHHHCCCCCC
T ss_conf -5788752030688999999999-99874077742010367024--------9999975322899999889986587632
Q ss_pred C----HHHHHHHHHHHCCHHHHHHHH--HCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHH---HHCCCC-CCCHHHHHHH
Q ss_conf 2----799999998505306778876--05778630357777404015558899999986---402676-5422589999
Q gi|254781202|r 728 L----PEVIYDGTLANGALLPYMDRL--TKLVSKGDRAAIGGLLGPVPSMVTNLTSSAVE---LATKDN-ENSKVNATKA 797 (864)
Q Consensus 728 ~----~~~~~~a~~~gGg~gi~gd~l--~~~~~r~g~~~~~~~~GP~~~~~~~~~~~~~~---~~~g~~-~~~~~~~~~~ 797 (864)
T Consensus 1242 Se~Gi~kmA~~aIGYTAglGF~gD~~GiV~G~~~--------mSAPV~GLA~~~~~i~~G~~~L~~G~~ps~A~~D~~~~ 1313 (1337)
T PHA02006 1242 SDEGIRKMAIDGIGYTAGLGFTADMWGVVTGHSR--------MSAPVFGLAEHSNEVFRGVKDLVTGDDPAAATGDIVSG 1313 (1337)
T ss_pred CHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCC--------CCCCCCCHHCCCCCHHHCCCHHCCCCCHHHHHHHHHHH
T ss_conf 0677999988640300002420322200147787--------67643002118960541534010688847788899985
Q ss_pred HHHCCCCCCHHHH-HHHH
Q ss_conf 9731877448999-9999
Q gi|254781202|r 798 IRKTLPFMNMWYL-KNSF 814 (864)
Q Consensus 798 ~~~~~P~~nLwy~-k~a~ 814 (864)
T Consensus 1314 A~~ALPFV~V~P~T~LL~ 1331 (1337)
T PHA02006 1314 AAGALPFVNVFPATKLLL 1331 (1337)
T ss_pred HCCCCCCCCCCCCHHHHH
T ss_conf 402486234463089999