Query gi|254781202|ref|YP_003065615.1| hypothetical protein CLIBASIA_05545 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 864
No_of_seqs 122 out of 124
Neff 6.3
Searched_HMMs 33803
Date Wed Jun 1 23:11:48 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781202.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2blf_B SORB, sulfite\:cytochr 39.8 16 0.00046 13.6 4.9 42 199-246 32-77 (81)
2 >2j3t_D Trafficking protein pa 29.3 9.8 0.00029 15.1 -0.7 26 182-207 9-34 (84)
3 >2np9_A DPGC; protein inhibito 27.4 18 0.00053 13.1 0.4 51 709-759 167-230 (233)
4 >3f8b_A Transcriptional regula 26.4 25 0.00074 12.0 1.3 11 491-501 26-36 (116)
5 >3dwc_A TCMCP-1, metallocarbox 25.5 26 0.00077 11.9 1.1 21 230-250 99-119 (121)
6 >2o11_A Chorismate synthase; s 25.0 21 0.00061 12.7 0.3 114 214-331 30-160 (194)
7 >2o70_A OHCU decarboxylase; UR 24.0 28 0.00082 11.7 2.4 24 313-336 79-102 (119)
8 >3h4t_A Glycosyltransferase GT 23.8 28 0.00083 11.7 2.4 21 819-839 138-158 (160)
9 >1n00_A Annexin GH1; membrane- 19.1 34 0.001 11.0 2.3 17 232-248 4-20 (83)
10 >3imk_A Putative molybdenum ca 17.0 15 0.00044 13.8 -1.8 35 820-854 53-87 (158)
No 1
>>2blf_B SORB, sulfite\:cytochrome C oxidoreductase subunit B; sulfite oxidase, molybdopterin, C-type cytochrome, heme, electron transport; HET: MSS HEC; 1.8A {Starkeya novella} PDB: 2bpb_B* 2c9x_B* 2ca3_B* 2ca4_B* (B:)
Probab=39.84 E-value=16 Score=13.56 Aligned_cols=42 Identities=10% Similarity=0.161 Sum_probs=33.6
Q ss_pred CCCHHHHHH----CCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 168799951----368989999997520875117568848989999998876
Q gi|254781202|r 199 PMSVDKLRA----TKKDDFVRSMLDWLDLSRYKDIDGTPLSRSEIASFVGEV 246 (864)
Q Consensus 199 ~hd~~~i~~----a~~~~W~~~i~~~lD~~~~~~~~G~~~~~~~~~~~L~~v 246 (864)
-|+...|.. -+++.|...| .+|++.-|.+.++.+....|..-
T Consensus 32 CHs~~~i~~q~~~~t~~~W~~tV------~~M~~~~Ga~i~~ee~~~Iv~YL 77 (81)
T 2blf_B 32 CHSVDYINTQPPGKGQAFWDAEV------QKMIKVYHAPVDEADAKAIADYL 77 (81)
T ss_dssp SSCTHHHHTSCTTCCHHHHHHHH------HHHHHTSCCCCCHHHHHHHHHHH
T ss_pred HCCCHHHHHCCCCCCHHHHHHHH------HHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 16878870455889999999999------99998749998877899999999
No 2
>>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport, alternative splicing, golgi apparatus; HET: P1L; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A (D:1-25,D:103-161)
Probab=29.33 E-value=9.8 Score=15.13 Aligned_cols=26 Identities=23% Similarity=0.180 Sum_probs=17.7
Q ss_pred HHHCCCCCHHHCCCCCCCCCHHHHHH
Q ss_conf 98617984002681454168799951
Q gi|254781202|r 182 AHEAGLDYKFFENRIPQPMSVDKLRA 207 (864)
Q Consensus 182 ~N~aG~~Igkl~~~~pq~hd~~~i~~ 207 (864)
.|.|||-|-.+|+|.|...+-+.++-
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~ne~klL 34 (84)
T 2j3t_D 9 VNKAGGLIYQLDSYAPRLTSNEKLML 34 (84)
T ss_dssp ECTTSCEEEEEECC---CCHHHHHHH
T ss_pred EECCCCEEEECCCCCCCCCCCCCCCC
T ss_conf 97786737604457776786420013
No 3
>>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A* (A:1-147,A:238-285,A:403-440)
Probab=27.38 E-value=18 Score=13.10 Aligned_cols=51 Identities=18% Similarity=0.151 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHCCCC-------C---CCHHHH---HHHHHHHCCHHHHHHHHHCCCCCCCHH
Q ss_conf 99999999999963899-------9---927999---999985053067788760577863035
Q gi|254781202|r 709 LAGIGVASIKALLRGED-------P---SLPEVI---YDGTLANGALLPYMDRLTKLVSKGDRA 759 (864)
Q Consensus 709 ~~G~~~~q~k~~l~Grd-------p---~~~~~~---~~a~~~gGg~gi~gd~l~~~~~r~g~~ 759 (864)
-+||+.--..-++-+-+ | .+|+-| +.+|.-|||+-+++-..+--+.|||+.
T Consensus 167 ElGYi~KivRGl~~~~~~~~sW~~~~veK~~~~w~a~vd~faiggg~qll~~~v~d~v~~~~~~ 230 (233)
T 2np9_A 167 ELGYIHKLVRGVLTNDDRPGWWHSPRIEKSPDGFRAYMAEFALMQALRLYGHDVIDKVGRFGGR 230 (233)
T ss_dssp HHTHHHHHHHCEECCSCSTTTTTCCEECCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHTCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC
T ss_conf 6678888888775445569999999689771679999999999999983799999999998508
No 4
>>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} PDB: 3f8c_A* 3f8f_A* (A:)
Probab=26.41 E-value=25 Score=12.00 Aligned_cols=11 Identities=9% Similarity=0.069 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q ss_conf 76999999999
Q gi|254781202|r 491 SHALIVYNQIG 501 (864)
Q Consensus 491 a~~~~~~~~la 501 (864)
.+|+.++..+.
T Consensus 26 ~~Gyei~~~i~ 36 (116)
T 3f8b_A 26 NYVYGIIKQVK 36 (116)
T ss_dssp BCHHHHHHHHH
T ss_pred CCHHHHHHHHH
T ss_conf 88999999999
No 5
>>3dwc_A TCMCP-1, metallocarboxypeptidase; cowrin family of metallocarboxypeptidases, hydrolase; 2.10A {Trypanosoma cruzi} (A:286-308,A:408-505)
Probab=25.47 E-value=26 Score=11.88 Aligned_cols=21 Identities=10% Similarity=0.254 Sum_probs=11.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHH
Q ss_conf 688489899999988763233
Q gi|254781202|r 230 DGTPLSRSEIASFVGEVFAER 250 (864)
Q Consensus 230 ~G~~~~~~~~~~~L~~vy~~i 250 (864)
+|++++..-..+.|++-|..+
T Consensus 99 TGe~ln~~~fi~YL~~KY~~l 119 (121)
T 3dwc_A 99 TGETLNPEHYRRHLERRYRDD 119 (121)
T ss_dssp HSSSCCTHHHHHHHHHHHTC-
T ss_pred HCCCCCHHHHHHHHHHHHHHH
T ss_conf 598998699999999987641
No 6
>>2o11_A Chorismate synthase; shikimate pathway, lyase; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2o12_A* 2qhf_A 2g85_A 1ztb_A (A:1-159,A:373-407)
Probab=24.97 E-value=21 Score=12.65 Aligned_cols=114 Identities=11% Similarity=0.122 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCH-HHHHHHHHHHHHHHHCCC------CCCC----------CCCCHHHHHHCCCCCEEE
Q ss_conf 99999752087511756884898-999999887632331177------6566----------875213543114576178
Q gi|254781202|r 214 VRSMLDWLDLSRYKDIDGTPLSR-SEIASFVGEVFAERVRST------SFKD----------PSIPSSEVGVKREFERVF 276 (864)
Q Consensus 214 ~~~i~~~lD~~~~~~~~G~~~~~-~~~~~~L~~vy~~i~t~g------~~~~----------~~~~~~~~~~~~~~~R~L 276 (864)
.++|...|++.+--..-|..+.. ...-++|..|++..+|+- .|++ .|.....+.+-.....+.
T Consensus 30 ~e~I~~~L~RRrpG~gr~~t~R~E~D~v~ilSGv~~g~TtGsPI~~~I~N~d~~s~~~~m~~~~~dy~~~~~~~~~~~~~ 109 (194)
T 2o11_A 30 SADIADQLARRRLGYGRGARMTFERDAVTVLSGIRHGSTLGGPIAIEIGNTEWPKWETVMAADPVDPAELADVARNAPLT 109 (194)
T ss_dssp HHHHHHHHHHHTCCCC---------CCEEEEESEETTEECSSCEEEEEECTTHHHHTTTTCSSCCCHHHHHTCGGGCCCC
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCCC
T ss_conf 99999999667989999877578887169914405886078885999974776664323356755556654443125432
Q ss_pred EECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 8409678999999608877689999988874455677999857996899999999
Q gi|254781202|r 277 HFKDSQAHMDYMEHFGVSTNVNTILTSELASLSKDIVIARELGPNADSFVKQMIV 331 (864)
Q Consensus 277 hFKDa~sw~~Y~~~fG~~~~~~~~m~~hi~~msrDIalm~~lGpNP~~~f~~l~~ 331 (864)
.++-+-+=+.|..|||. +++... .=+..+|.++..=.-|.=.+..++...+
T Consensus 110 ~PRPGHAD~t~~~KYG~-~D~R~g---~gr~SaReTa~rVaAGaIAk~iL~~~g~ 160 (194)
T 2o11_A 110 RPRPGHADYAGMLKYGF-DDARPV---LERASARETAARVAAGTVARAFLRQALD 160 (194)
T ss_dssp SCCTTSSHHHHHHHHTC-SSSHHH---HHHHSGGGHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHCC-CCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 36667651888888614-555676---6544123559999999999999986538
No 7
>>2o70_A OHCU decarboxylase; URIC acid, decarboxylation, 5-hydroxyisourate, allantoin, lyase; 1.80A {Danio rerio} (A:56-174)
Probab=23.99 E-value=28 Score=11.69 Aligned_cols=24 Identities=8% Similarity=0.009 Sum_probs=14.4
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 799985799689999999999986
Q gi|254781202|r 313 VIARELGPNADSFVKQMIVQTIAN 336 (864)
Q Consensus 313 alm~~lGpNP~~~f~~l~~~~~~~ 336 (864)
+|.+++...|+.-++..+.++.+.
T Consensus 79 ~l~~Rl~n~~e~E~~~al~Ev~kI 102 (119)
T 2o70_A 79 QLSERLKNRRTAELECAIEEVKKI 102 (119)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 999998699999999999999999
No 8
>>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} PDB: 3h4i_A* 1pn3_A* 1pnv_A* (A:206-365)
Probab=23.78 E-value=28 Score=11.66 Aligned_cols=21 Identities=19% Similarity=0.265 Sum_probs=12.5
Q ss_pred HHHHHHHCCCCHHHHHHHHHH
Q ss_conf 999998708124799999998
Q gi|254781202|r 819 LNQILEELNPGYLDRQQSKKK 839 (864)
Q Consensus 819 ~~~~~e~~~Pgy~~r~~~r~~ 839 (864)
-..++++++|.|++++++.++
T Consensus 138 ~~ai~~ll~~~~~~~a~~l~~ 158 (160)
T 3h4t_A 138 SAALATALTPGIRARAAAVAG 158 (160)
T ss_dssp HHHHHHHTSHHHHHHHHHHHT
T ss_pred HHHHHHHHCHHHHHHHHHHHH
T ss_conf 999999839999999999999
No 9
>>1n00_A Annexin GH1; membrane-binding, calcium-binding, membrane protein; 2.10A {Gossypium hirsutum} (A:163-245)
Probab=19.07 E-value=34 Score=10.98 Aligned_cols=17 Identities=0% Similarity=-0.126 Sum_probs=7.0
Q ss_pred CCCCHHHHHHHHHHHHH
Q ss_conf 84898999999887632
Q gi|254781202|r 232 TPLSRSEIASFVGEVFA 248 (864)
Q Consensus 232 ~~~~~~~~~~~L~~vy~ 248 (864)
.+.++..+.......|+
T Consensus 4 ~~vd~~~~~~Da~~L~~ 20 (83)
T 1n00_A 4 EEVNMTLAKTEAKLLHE 20 (83)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
T ss_conf 97698998889999999
No 10
>>3imk_A Putative molybdenum carrier protein; YP_461806.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE MES PG4 PG6; 1.45A {Syntrophus aciditrophicus SB} (A:)
Probab=16.97 E-value=15 Score=13.77 Aligned_cols=35 Identities=14% Similarity=0.027 Sum_probs=0.0
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 99998708124799999998747443458643587
Q gi|254781202|r 820 NQILEELNPGYLDRQQSKKKKKGIELFQNMDEGLP 854 (864)
Q Consensus 820 ~~~~e~~~Pgy~~r~~~r~~~~~~~~~w~p~~~~p 854 (864)
|+|+|+-+++|..|+++-++..+-+-...+|+..+
T Consensus 53 Y~L~Et~~~~Y~~RT~~NV~DSDgTLI~~~g~l~G 87 (158)
T 3imk_A 53 YQLQEXPTSDYSKRTEKNVLDSDGTLIISHGILKG 87 (158)
T ss_dssp SCCEECSSCCHHHHHHHHHHTSSEEEEEESSSCCH
T ss_pred CCCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCC
T ss_conf 55432587762467663244477059985588886
Done!