Query         gi|254781202|ref|YP_003065615.1| hypothetical protein CLIBASIA_05545 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 864
No_of_seqs    122 out of 124
Neff          6.3 
Searched_HMMs 23785
Date          Wed Jun  1 02:02:15 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781202.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3ohe_A Histidine triad (HIT) p  33.3      14 0.00058   12.8   1.7   50  160-209    51-100 (137)
  2 3i4s_A Histidine triad protein  32.0     2.5 0.00011   18.4  -2.5   86  160-253    56-141 (149)
  3 3nrd_A Histidine triad (HIT) p  25.2     3.5 0.00015   17.3  -2.8   80  161-248    54-133 (135)
  4 3e3u_A Peptide deformylase; me  24.7      19 0.00079   11.8   1.3   11  852-862   186-196 (197)
  5 2dat_A Possible global transcr  23.4      20 0.00084   11.6   5.3   38  196-233    56-100 (123)
  6 2hyv_A Annexin A2; calcium-bin  20.3      23 0.00096   11.2   5.7   93  204-307   127-219 (308)
  7 2blf_B SORB, sulfite\:cytochro  20.1      23 0.00097   11.1   4.9   42  199-246    32-77  (81)
  8 3i24_A HIT family hydrolase; s  18.0      25  0.0011   10.8   2.6   39  162-200    53-91  (149)
  9 2oik_A Histidine triad (HIT) p  15.6      29  0.0012   10.4   2.4   39  162-200    60-98  (154)
 10 3imk_A Putative molybdenum car  15.4      14 0.00059   12.8  -1.4   34  820-853    53-86  (158)

No 1  
>3ohe_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, hydrolase; HET: MSE; 1.20A {Marinobacter aquaeolei}
Probab=33.33  E-value=14  Score=12.84  Aligned_cols=50  Identities=18%  Similarity=0.125  Sum_probs=33.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCHHHHHHCC
Q ss_conf             99899999999999999999999861798400268145416879995136
Q gi|254781202|r  160 QNEQASRLVKQYFETQRELHSQAHEAGLDYKFFENRIPQPMSVDKLRATK  209 (864)
Q Consensus       160 gn~~a~~~A~~~~~~~e~~r~~~N~aG~~Igkl~~~~pq~hd~~~i~~a~  209 (864)
                      .+..+.++-..+..+.+.++..++..|.++..+.+.+|+.|=+.-=|..+
T Consensus        51 ~~ee~~~l~~~~~~v~~al~~~~~~~~~N~~~~g~~v~HlH~HiIPR~~~  100 (137)
T 3ohe_A           51 PNEQQQRLLFESSALSEGMMELFGGDKMNVAALGNMVPQLHLHHIVRYQG  100 (137)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECCSSCCSCCEEEEEECTT
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCEEEEEEEEEECCCCC
T ss_conf             99999999999999999975243975205887588020899999605479


No 2  
>3i4s_A Histidine triad protein; hydrolase, phosphatase, HIT superfamily, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.75A {Bradyrhizobium japonicum}
Probab=32.01  E-value=2.5  Score=18.43  Aligned_cols=86  Identities=15%  Similarity=0.153  Sum_probs=55.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf             99899999999999999999999861798400268145416879995136898999999752087511756884898999
Q gi|254781202|r  160 QNEQASRLVKQYFETQRELHSQAHEAGLDYKFFENRIPQPMSVDKLRATKKDDFVRSMLDWLDLSRYKDIDGTPLSRSEI  239 (864)
Q Consensus       160 gn~~a~~~A~~~~~~~e~~r~~~N~aG~~Igkl~~~~pq~hd~~~i~~a~~~~W~~~i~~~lD~~~~~~~~G~~~~~~~~  239 (864)
                      ....+.++...+..+...+++.|+..|.+|+-.-+-+|+.|=..-=|..+...|...++        -.....+.++.++
T Consensus        56 ~~ee~~~l~~~v~~v~~al~~~~~~~~vNi~~~Gq~VpHlHiHIIPR~~~D~~~p~pvw--------~~~~~~~~d~~e~  127 (149)
T 3i4s_A           56 DEVQQAQLMTEISRVSRALKEITKCDKLNIAALGNLVPQLHVHIIARRTGDAAWPRPVW--------GVMQPLAHDATEV  127 (149)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEECCSSCCSCCEEEEEECTTSTTTTSCCT--------TTSCCCCCCHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCC--------CCCCCCCCCHHHH
T ss_conf             99999999999999999999872952553997689733257988524468988987702--------6788877999999


Q ss_pred             HHHHHHHHHHHHCC
Q ss_conf             99988763233117
Q gi|254781202|r  240 ASFVGEVFAERVRS  253 (864)
Q Consensus       240 ~~~L~~vy~~i~t~  253 (864)
                      .++...+-+.|..+
T Consensus       128 ~~~~~~ir~~L~lg  141 (149)
T 3i4s_A          128 QNFISALRRKIWLG  141 (149)
T ss_dssp             HHHHHHHHHHHCC-
T ss_pred             HHHHHHHHHHHCCC
T ss_conf             99999999987788


No 3  
>3nrd_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.06A {Sinorhizobium meliloti}
Probab=25.16  E-value=3.5  Score=17.34  Aligned_cols=80  Identities=10%  Similarity=0.042  Sum_probs=49.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf             98999999999999999999998617984002681454168799951368989999997520875117568848989999
Q gi|254781202|r  161 NEQASRLVKQYFETQRELHSQAHEAGLDYKFFENRIPQPMSVDKLRATKKDDFVRSMLDWLDLSRYKDIDGTPLSRSEIA  240 (864)
Q Consensus       161 n~~a~~~A~~~~~~~e~~r~~~N~aG~~Igkl~~~~pq~hd~~~i~~a~~~~W~~~i~~~lD~~~~~~~~G~~~~~~~~~  240 (864)
                      ...+.++-+.+..+++.++..++..|.+|.-.-+-+|+.|=+.-=|..+...|...+++        .....+.++.+++
T Consensus        54 ~ee~~~l~~~~~~v~~al~~~~~~~~iN~~~~gq~vpHlH~HiIPR~~~D~~~p~~vw~--------~~~~~~~~~~e~~  125 (135)
T 3nrd_A           54 PLDQAMLTFETNLVAAGLKKATGAEKINIGALGNIVRQLHVHVIARREGDPNWPGPVWG--------FGKAEPWPEEEHR  125 (135)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCSEEEEEECCSSCCSCCEEEEEECTTSTTTTSCSTT--------CSCCCCCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCEEEEEEECCCCCCCCCCCCCCC--------CCCCCCCCHHHHH
T ss_conf             99999999999999999999839760329886897775799995674799888876127--------7888779999999


Q ss_pred             HHHHHHHH
Q ss_conf             99887632
Q gi|254781202|r  241 SFVGEVFA  248 (864)
Q Consensus       241 ~~L~~vy~  248 (864)
                      ++...+-+
T Consensus       126 ~l~~kI~~  133 (135)
T 3nrd_A          126 TFAARIME  133 (135)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
T ss_conf             99999996


No 4  
>3e3u_A Peptide deformylase; metallo-enzyme, hydrolase, iron, metal-binding, protein biosynthesis; HET: NVC; 1.56A {Mycobacterium tuberculosis}
Probab=24.72  E-value=19  Score=11.79  Aligned_cols=11  Identities=55%  Similarity=0.815  Sum_probs=6.0

Q ss_pred             CCCCCCCCCCC
Q ss_conf             58767999877
Q gi|254781202|r  852 GLPHRLPFPFG  862 (864)
Q Consensus       852 ~~p~r~p~~~~  862 (864)
                      .+|...|-|||
T Consensus       186 ~~p~~~~~~~~  196 (197)
T 3e3u_A          186 WLPGEDPDPFG  196 (197)
T ss_dssp             ECBTTBCCTTC
T ss_pred             CCCCCCCCCCC
T ss_conf             69897989899


No 5  
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.43  E-value=20  Score=11.61  Aligned_cols=38  Identities=13%  Similarity=0.336  Sum_probs=18.0

Q ss_pred             CCCCCCHHHHHH-------CCHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             454168799951-------36898999999752087511756884
Q gi|254781202|r  196 IPQPMSVDKLRA-------TKKDDFVRSMLDWLDLSRYKDIDGTP  233 (864)
Q Consensus       196 ~pq~hd~~~i~~-------a~~~~W~~~i~~~lD~~~~~~~~G~~  233 (864)
                      |.+..|...|++       ...++|.+++.=.+...+..++.|..
T Consensus        56 Ik~PmdL~~I~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~  100 (123)
T 2dat_A           56 IRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLEGSQ  100 (123)
T ss_dssp             CSSCCCHHHHHHHHTTTCCCSHHHHHHHHHHHHHHHHHHSCTTSH
T ss_pred             CCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf             289777999999886601598999999999999999998789999


No 6  
>2hyv_A Annexin A2; calcium-binding protein, membrane-binding protein, helix bundle, heparin, hexasaccharide, metal binding protein; HET: UAP SGN IDS; 1.42A {Homo sapiens} PDB: 2hyu_A* 2hyw_A 1w7b_A 1xjl_A
Probab=20.33  E-value=23  Score=11.17  Aligned_cols=93  Identities=14%  Similarity=0.075  Sum_probs=48.6

Q ss_pred             HHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCEEEEECCHHH
Q ss_conf             99513689899999975208751175688489899999988763233117765668752135431145761788409678
Q gi|254781202|r  204 KLRATKKDDFVRSMLDWLDLSRYKDIDGTPLSRSEIASFVGEVFAERVRSTSFKDPSIPSSEVGVKREFERVFHFKDSQA  283 (864)
Q Consensus       204 ~i~~a~~~~W~~~i~~~lD~~~~~~~~G~~~~~~~~~~~L~~vy~~i~t~g~~~~~~~~~~~~~~~~~~~R~LhFKDa~s  283 (864)
                      .|..-.-..|.+.++.+|--.+.  |++.+.+...+.+-....|+... ..+.++...+..-+.++...|....|+    
T Consensus       127 di~~e~sG~~~~ll~~ll~~~R~--e~~~~vd~~~a~~da~~L~~a~~-~~~gtde~~~i~Il~~rs~~ql~~i~~----  199 (308)
T 2hyv_A          127 DIISDTSGDFRKLMVALAKGRRA--EDGSVIDYELIDQDARDLYDAGV-KRKGTDVPKWISIMTERSVPHLQKVFD----  199 (308)
T ss_dssp             HHHHTCCHHHHHHHHHHHTCCCC--CCCSSCCHHHHHHHHHHHHHTTT-TSSSCCHHHHHHHHHHSCHHHHHHHHH----
T ss_pred             HHHHCCCHHHHHHHHHHHCCCCC--CCCCCCCHHHHHHHHHHHHHHHH-CCCCCCHHHHHHHHHCCCHHHHHHHHH----
T ss_conf             98853678899999998706878--78887899999989999998764-435887457502450499999999999----


Q ss_pred             HHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf             999999608877689999988874
Q gi|254781202|r  284 HMDYMEHFGVSTNVNTILTSELAS  307 (864)
Q Consensus       284 w~~Y~~~fG~~~~~~~~m~~hi~~  307 (864)
                        +|.+.||  .++..++.+.+.+
T Consensus       200 --~Y~~~~g--~~l~~~i~~e~sG  219 (308)
T 2hyv_A          200 --RYKSYSP--YDMLESIRKEVKG  219 (308)
T ss_dssp             --HHTTTCS--SCHHHHHHHHCCH
T ss_pred             --HHHHHCC--CCHHHHHHHHCCC
T ss_conf             --9998629--9889999876365


No 7  
>2blf_B SORB, sulfite\:cytochrome C oxidoreductase subunit B; sulfite oxidase, molybdopterin, C-type cytochrome, heme, electron transport; HET: MSS HEC; 1.8A {Starkeya novella} PDB: 2bpb_B* 2c9x_B* 2ca3_B* 2ca4_B*
Probab=20.05  E-value=23  Score=11.13  Aligned_cols=42  Identities=10%  Similarity=0.161  Sum_probs=29.3

Q ss_pred             CCCHHHHHH----CCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf             168799951----368989999997520875117568848989999998876
Q gi|254781202|r  199 PMSVDKLRA----TKKDDFVRSMLDWLDLSRYKDIDGTPLSRSEIASFVGEV  246 (864)
Q Consensus       199 ~hd~~~i~~----a~~~~W~~~i~~~lD~~~~~~~~G~~~~~~~~~~~L~~v  246 (864)
                      -|+...|..    -+.+.|...|      .+|++.-|.+.++.+.+..+...
T Consensus        32 CHs~~~v~~~~~~~t~~~W~~~V------~~M~~~~ga~i~~~e~~~I~~YL   77 (81)
T 2blf_B           32 CHSVDYINTQPPGKGQAFWDAEV------QKMIKVYHAPVDEADAKAIADYL   77 (81)
T ss_dssp             SSCTHHHHTSCTTCCHHHHHHHH------HHHHHTSCCCCCHHHHHHHHHHH
T ss_pred             CCCCHHHCCCCCCCCHHHHHHHH------HHHHHHCCCCCCHHHHHHHHHHH
T ss_conf             07966653065789989999999------99997549998888899999999


No 8  
>3i24_A HIT family hydrolase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.50A {Vibrio fischeri ES114}
Probab=17.98  E-value=25  Score=10.80  Aligned_cols=39  Identities=18%  Similarity=0.209  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCC
Q ss_conf             899999999999999999999861798400268145416
Q gi|254781202|r  162 EQASRLVKQYFETQRELHSQAHEAGLDYKFFENRIPQPM  200 (864)
Q Consensus       162 ~~a~~~A~~~~~~~e~~r~~~N~aG~~Igkl~~~~pq~h  200 (864)
                      ....++...+..+...++..++..|.+|.-.-+.+|+.|
T Consensus        53 ee~~~l~~~~~~v~~al~~~~~~~~~N~~~~gq~v~HlH   91 (149)
T 3i24_A           53 EQQIQFIKESSAVAQLLEDNFSPDKINIGALGNLVPQLH   91 (149)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCSEEEEEECCSSCCSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHCCEEEEEE
T ss_conf             999999999999999999881976573888599833799


No 9  
>2oik_A Histidine triad (HIT) protein; YP_546612.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.65A {Methylobacillus flagellatus KT} SCOP: d.13.1.1
Probab=15.58  E-value=29  Score=10.39  Aligned_cols=39  Identities=10%  Similarity=0.186  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCC
Q ss_conf             899999999999999999999861798400268145416
Q gi|254781202|r  162 EQASRLVKQYFETQRELHSQAHEAGLDYKFFENRIPQPM  200 (864)
Q Consensus       162 ~~a~~~A~~~~~~~e~~r~~~N~aG~~Igkl~~~~pq~h  200 (864)
                      .....+...+.++...++..++..+.+++..-+-+|+.|
T Consensus        60 ~e~~~l~~~~~~~~~~l~~~~~~~~~n~~~~g~~vpHlH   98 (154)
T 2oik_A           60 AERDHLMLVVFAVEEAVREVMRPDKINLASLGNMTPHVH   98 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCSEEEEEECCSSSCSCE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCEEE
T ss_conf             899999999999988889870645533998778778899


No 10 
>3imk_A Putative molybdenum carrier protein; YP_461806.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE MES PG4 PG6; 1.45A {Syntrophus aciditrophicus SB}
Probab=15.38  E-value=14  Score=12.76  Aligned_cols=34  Identities=15%  Similarity=0.024  Sum_probs=0.0

Q ss_pred             HHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             9999870812479999999874744345864358
Q gi|254781202|r  820 NQILEELNPGYLDRQQSKKKKKGIELFQNMDEGL  853 (864)
Q Consensus       820 ~~~~e~~~Pgy~~r~~~r~~~~~~~~~w~p~~~~  853 (864)
                      |+|+|+-+++|..|.++-++.-+-+-...+|+..
T Consensus        53 Y~L~E~~~~~y~~RT~~NV~DsD~TLI~~~g~l~   86 (158)
T 3imk_A           53 YQLQEMPTSDYSKRTEKNVLDSDGTLIISHGILK   86 (158)
T ss_dssp             SCCEECSSCCHHHHHHHHHHTSSEEEEEESSSCC
T ss_pred             CCCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf             6644158776657777442336705998559888


Done!