Query gi|254781202|ref|YP_003065615.1| hypothetical protein CLIBASIA_05545 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 864
No_of_seqs 122 out of 124
Neff 6.3
Searched_HMMs 13730
Date Wed Jun 1 11:56:14 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781202.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1dm5a_ a.65.1.1 (A:) Annexin 80.0 1.2 9.1E-05 19.0 6.6 86 209-306 142-227 (315)
2 d2ie7a1 a.65.1.1 (A:2-319) Ann 57.6 3.5 0.00026 15.5 5.1 14 212-225 145-158 (318)
3 d1sr9a1 a.5.7.1 (A:437-491) 2- 24.2 11 0.00081 11.7 1.8 10 15-24 37-46 (55)
4 d3ctda1 a.80.1.2 (A:258-420) U 22.9 12 0.00086 11.5 2.2 20 722-741 14-33 (163)
5 d2qw6a1 a.80.1.2 (A:241-328) U 20.4 13 0.00095 11.2 2.2 19 722-740 12-30 (88)
6 d1pbya1 a.3.1.7 (A:1-85) Quino 14.0 18 0.0013 10.1 3.4 34 208-247 31-64 (85)
7 d2q37a1 a.288.1.1 (A:6-160) OH 11.8 23 0.0017 9.4 2.1 24 313-336 121-144 (155)
8 d1fita_ d.13.1.1 (A:) FHIT (fr 11.7 23 0.0017 9.3 1.2 87 162-248 52-146 (146)
9 d1w7ba_ a.65.1.1 (A:) Annexin 11.6 23 0.0017 9.3 12.6 234 113-368 45-292 (319)
10 d1rp3a1 a.4.13.1 (A:87-163) Si 11.4 24 0.0017 9.2 3.3 34 3-36 13-46 (77)
No 1
>d1dm5a_ a.65.1.1 (A:) Annexin XII {Hydra vulgaris [TaxId: 6087]}
Probab=79.95 E-value=1.2 Score=18.95 Aligned_cols=86 Identities=13% Similarity=0.170 Sum_probs=43.1
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCEEEEECCHHHHHHHH
Q ss_conf 68989999997520875117568848989999998876323311776566875213543114576178840967899999
Q gi|254781202|r 209 KKDDFVRSMLDWLDLSRYKDIDGTPLSRSEIASFVGEVFAERVRSTSFKDPSIPSSEVGVKREFERVFHFKDSQAHMDYM 288 (864)
Q Consensus 209 ~~~~W~~~i~~~lD~~~~~~~~G~~~~~~~~~~~L~~vy~~i~t~g~~~~~~~~~~~~~~~~~~~R~LhFKDa~sw~~Y~ 288 (864)
.-..|...++.++.-.+. .+.+.++..+++-....|+... +.+.++......-+.++...|....|+ +|+
T Consensus 142 ~sg~~~~ll~~ll~~~R~---e~~~vd~~~a~~da~~L~~a~~-~~~g~de~~~~~Il~~rs~~ql~~i~~------~Y~ 211 (315)
T d1dm5a_ 142 TSGNFQRLLVSMLQGGRK---EDEPVNAAHAAEDAAAIYQAGE-GQIGTDESRFNAVLATRSYPQLHQIFH------EYS 211 (315)
T ss_dssp CCHHHHHHHHHHHTTCCC---TTCCCCHHHHHHHHHHHHHHTT-TSSSCCHHHHHHHHHHSCHHHHHHHHH------HHH
T ss_pred CCHHHHHHHHHHHHCCCC---CCCCCCHHHHHHHHHHHHHHHH-CCCCCCCHHHHCCCCCCCHHHHHHHHH------HHH
T ss_conf 547999999998835778---8888798887568999999874-766875233300050389999999999------999
Q ss_pred HHHCCCCCHHHHHHHHHH
Q ss_conf 960887768999998887
Q gi|254781202|r 289 EHFGVSTNVNTILTSELA 306 (864)
Q Consensus 289 ~~fG~~~~~~~~m~~hi~ 306 (864)
+.|| .++..++.+...
T Consensus 212 ~~~g--~~l~~~i~~e~s 227 (315)
T d1dm5a_ 212 KISN--KTILQAIENEFS 227 (315)
T ss_dssp HHSS--SCHHHHHHHHCC
T ss_pred HHCC--CCHHHHHHHHCC
T ss_conf 8709--768999988558
No 2
>d2ie7a1 a.65.1.1 (A:2-319) Annexin V {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=57.63 E-value=3.5 Score=15.53 Aligned_cols=14 Identities=21% Similarity=0.344 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 89999997520875
Q gi|254781202|r 212 DFVRSMLDWLDLSR 225 (864)
Q Consensus 212 ~W~~~i~~~lD~~~ 225 (864)
.|.+.++.+|.-.|
T Consensus 145 ~~~~ll~~ll~~~R 158 (318)
T d2ie7a1 145 YYQRMLVVLLQANR 158 (318)
T ss_dssp HHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHCCC
T ss_conf 89999999980687
No 3
>d1sr9a1 a.5.7.1 (A:437-491) 2-isopropylmalate synthase LeuA, communication domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=24.20 E-value=11 Score=11.72 Aligned_cols=10 Identities=40% Similarity=0.458 Sum_probs=3.3
Q ss_pred CCCCHHHHHH
Q ss_conf 7877899999
Q gi|254781202|r 15 RELSKKELRR 24 (864)
Q Consensus 15 r~lsa~E~~~ 24 (864)
++++.+++-+
T Consensus 37 ~Els~~~I~~ 46 (55)
T d1sr9a1 37 GEVSPKEMWD 46 (55)
T ss_dssp -CCCHHHHHH
T ss_pred CCCCHHHHHH
T ss_conf 7569999999
No 4
>d3ctda1 a.80.1.2 (A:258-420) Uncharacterized protein YrvN {Prochlorococcus marinus [TaxId: 1219]}
Probab=22.89 E-value=12 Score=11.54 Aligned_cols=20 Identities=25% Similarity=0.420 Sum_probs=10.5
Q ss_pred CCCCCCCHHHHHHHHHHHCC
Q ss_conf 38999927999999985053
Q gi|254781202|r 722 RGEDPSLPEVIYDGTLANGA 741 (864)
Q Consensus 722 ~Grdp~~~~~~~~a~~~gGg 741 (864)
+|-||+..-+|++-++++|.
T Consensus 14 RgSD~dAAly~larml~~Ge 33 (163)
T d3ctda1 14 RGSDPDATLYWLANMVEAGE 33 (163)
T ss_dssp HTTCHHHHHHHHHHHHHTTC
T ss_pred HCCCCCHHHHHHHHHHHCCC
T ss_conf 43893599999999997698
No 5
>d2qw6a1 a.80.1.2 (A:241-328) Uncharacterized protein EfaeDRAFT_0938 {Enterococcus faecium [TaxId: 1352]}
Probab=20.44 E-value=13 Score=11.18 Aligned_cols=19 Identities=21% Similarity=0.247 Sum_probs=7.8
Q ss_pred CCCCCCCHHHHHHHHHHHC
Q ss_conf 3899992799999998505
Q gi|254781202|r 722 RGEDPSLPEVIYDGTLANG 740 (864)
Q Consensus 722 ~Grdp~~~~~~~~a~~~gG 740 (864)
+|-||+..-+|++.++++|
T Consensus 12 RgSD~dAAlywlarml~~G 30 (88)
T d2qw6a1 12 RGSDVDAALHYLARLVEAG 30 (88)
T ss_dssp HTTCHHHHHHHHHHHHHTT
T ss_pred HCCCCCHHHHHHHHHHHCC
T ss_conf 7589029999999998869
No 6
>d1pbya1 a.3.1.7 (A:1-85) Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 {Paracoccus denitrificans [TaxId: 266]}
Probab=14.01 E-value=18 Score=10.10 Aligned_cols=34 Identities=18% Similarity=0.240 Sum_probs=20.2
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 3689899999975208751175688489899999988763
Q gi|254781202|r 208 TKKDDFVRSMLDWLDLSRYKDIDGTPLSRSEIASFVGEVF 247 (864)
Q Consensus 208 a~~~~W~~~i~~~lD~~~~~~~~G~~~~~~~~~~~L~~vy 247 (864)
-+.+.|...| .+|++..|.+.++.+.+..|..--
T Consensus 31 ~t~~~W~~~V------~~M~~~~Ga~l~~~e~~~Iv~YLa 64 (85)
T d1pbya1 31 KTPEGWDMTV------TRMMRNHGVALEPEERAAIVRHLS 64 (85)
T ss_dssp ECHHHHHHHH------HHHHHHSCCCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHH------HHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 8999999999------999988389999899999999999
No 7
>d2q37a1 a.288.1.1 (A:6-160) OHCU decarboxylase, UraD {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=11.80 E-value=23 Score=9.36 Aligned_cols=24 Identities=0% Similarity=-0.057 Sum_probs=15.9
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 799985799689999999999986
Q gi|254781202|r 313 VIARELGPNADSFVKQMIVQTIAN 336 (864)
Q Consensus 313 alm~~lGpNP~~~f~~l~~~~~~~ 336 (864)
+|-++++..|+..++..+.++.+.
T Consensus 121 ~l~~Rl~n~~~~E~~~a~~Ev~kI 144 (155)
T d2q37a1 121 ALKERYENRPIVELEIAAMEQMKI 144 (155)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 999998799999999999999999
No 8
>d1fita_ d.13.1.1 (A:) FHIT (fragile histidine triad protein) {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.75 E-value=23 Score=9.34 Aligned_cols=87 Identities=13% Similarity=0.099 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCC-----CCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf 8999999999999999999998617984002681-----45416879995136898999999752087511756884898
Q gi|254781202|r 162 EQASRLVKQYFETQRELHSQAHEAGLDYKFFENR-----IPQPMSVDKLRATKKDDFVRSMLDWLDLSRYKDIDGTPLSR 236 (864)
Q Consensus 162 ~~a~~~A~~~~~~~e~~r~~~N~aG~~Igkl~~~-----~pq~hd~~~i~~a~~~~W~~~i~~~lD~~~~~~~~G~~~~~ 236 (864)
.+...+.+.+.++++.+++.++-.|.+|+...+. +|+.|=..-=|..|.-.|.+.+.+.+.........-..-++
T Consensus 52 ~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~agq~v~HlH~HiiPR~~gD~~~~~~~~~~~~~~~~~~~~~~~r~~ 131 (146)
T d1fita_ 52 DEVADLFQTTQRVGTVVEKHFHGTSLTFSMQDGPEAGQTVKHVHVHVLPRKAGDFHRNDSIYEELQKHDKEDFPASWRSE 131 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSEEEEEECCSGGGTCCSSSCCEEEEEECTTC--------------------CCCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHCHHHHHHCCCCH
T ss_conf 99999999999999988862466258888716655689977799999668678766665003555020444552225889
Q ss_pred HHH---HHHHHHHHH
Q ss_conf 999---999887632
Q gi|254781202|r 237 SEI---ASFVGEVFA 248 (864)
Q Consensus 237 ~~~---~~~L~~vy~ 248 (864)
+++ .+.|++.|+
T Consensus 132 ee~~~~a~~lr~~~~ 146 (146)
T d1fita_ 132 EEMAAEAAALRVYFQ 146 (146)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHCC
T ss_conf 999999999998519
No 9
>d1w7ba_ a.65.1.1 (A:) Annexin II {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.57 E-value=23 Score=9.27 Aligned_cols=234 Identities=10% Similarity=0.017 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-----------HHHHHHHHCCCCCCHHHHHHHHH-HHHHHHHHH
Q ss_conf 99999999999999999-985200014565418889-----------99999984888899899999999-999999999
Q gi|254781202|r 113 EMKIKAAETKVLSKFNE-YAEVGSKNLGFTLDKQFG-----------LDVFDEMKGKKTQNEQASRLVKQ-YFETQRELH 179 (864)
Q Consensus 113 ~~~~~a~~~~~~~~l~~-~~~~~~~~~~~~~dka~~-----------~~~~~e~~g~~tgn~~a~~~A~~-~~~~~e~~r 179 (864)
..+.++++..|...... +....+.-+...+.+... +.+-+.+.|..|......++.-. ..+..+.++
T Consensus 45 ~~qr~~i~~~Y~~~yg~~L~~~lk~e~sG~f~~~l~~l~~~p~~~~A~~l~~A~kG~gt~e~~LieIl~trs~~e~~~ik 124 (319)
T d1w7ba_ 45 NEQRQDIAFAYQRRTKKELASALKSALSGHLETVILGLLKTPAQYDASELKASMKGLGTDEDSLIEIICSRTNQELQEIN 124 (319)
T ss_dssp HHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHSCHHHHHHHHHHHHTCSSSCCHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHEECCCHHHHHHHH
T ss_conf 99999999999999795799999888485299999998568877999999998612798467772230038889999999
Q ss_pred HHHHHCCCCCHHHCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99986179840026814541687999513689899999975208751175688489899999988763233117765668
Q gi|254781202|r 180 SQAHEAGLDYKFFENRIPQPMSVDKLRATKKDDFVRSMLDWLDLSRYKDIDGTPLSRSEIASFVGEVFAERVRSTSFKDP 259 (864)
Q Consensus 180 ~~~N~aG~~Igkl~~~~pq~hd~~~i~~a~~~~W~~~i~~~lD~~~~~~~~G~~~~~~~~~~~L~~vy~~i~t~g~~~~~ 259 (864)
..|..-= +..-...|..-....|.+.++.+|.-.+ .|++.+.++..+..-....|+... .++.++.
T Consensus 125 ~aY~~~y-----------~~~L~~di~~e~sg~~~~lll~ll~~~R--~e~~~~vd~~~a~~DA~~L~~a~~-~~~g~de 190 (319)
T d1w7ba_ 125 RVYKEMY-----------KTDLEKDIISDTSGDFRKLMVALAKGRR--AEDGSVIDYELIDQDARDLYDAGV-KRKGTDV 190 (319)
T ss_dssp HHHHHHS-----------SSCHHHHHHHHCCHHHHHHHHHHHTCCC--CCCCSCCCHHHHHHHHHHHHHTTT-TSSSCCH
T ss_pred HHHHHHC-----------CCCHHHHHHHCCCHHHHHHHHHHHHCCC--CCCCCCCCHHHHHHHHHHHHHHHH-HCCCCCH
T ss_conf 9998742-----------8987999874466788999999871487--768886799999879999998764-0468886
Q ss_pred CCCHHHHHHCCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC
Q ss_conf 7521354311457617884096789999996088776899999888744556779998579-968999999999998611
Q gi|254781202|r 260 SIPSSEVGVKREFERVFHFKDSQAHMDYMEHFGVSTNVNTILTSELASLSKDIVIARELGP-NADSFVKQMIVQTIANDQ 338 (864)
Q Consensus 260 ~~~~~~~~~~~~~~R~LhFKDa~sw~~Y~~~fG~~~~~~~~m~~hi~~msrDIalm~~lGp-NP~~~f~~l~~~~~~~~~ 338 (864)
.....-+.++...|.-..|+ +|.+.|| .++..++.+.+.+--++.=+.=.... ||..-|-.++....+...
T Consensus 191 ~~~i~Il~~rs~~ql~~i~~------~Y~~~~g--~~l~~ai~~e~sG~~~~aL~~iv~~~~~~~~~~A~~L~~Am~G~g 262 (319)
T d1w7ba_ 191 PKWISIMTERSVPHLQKVFD------RYKSYSP--YDMLESIRKEVKGDLENAFLNLVQCIQNKPLYFADRLYDSMKGKG 262 (319)
T ss_dssp HHHHHHHHHSCHHHHHHHHH------HHHHHCS--SCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred HHHHHHHHCCCHHHHHHHHH------HHHHHCC--CCHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC
T ss_conf 88735671299999999999------9998549--878999988737669999999999995251799999999853778
Q ss_pred CCCCCHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 100000122000014889989999999997
Q gi|254781202|r 339 EASAGNKVLKDWLGRNKLEVRQEAMLQMWE 368 (864)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (864)
++........-...+..+..-...-+..|.
T Consensus 263 tdd~~Liriiv~R~e~dl~~Ik~~y~~~yg 292 (319)
T d1w7ba_ 263 TRDKVLIRIMVSRSEVDMLKIRSEFKRKYG 292 (319)
T ss_dssp CCHHHHHHHHHHHTTTTHHHHHHHHHHHHS
T ss_pred CCHHHHEEEEEECCHHHHHHHHHHHHHHHC
T ss_conf 775566011466689999999999999959
No 10
>d1rp3a1 a.4.13.1 (A:87-163) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=11.41 E-value=24 Score=9.20 Aligned_cols=34 Identities=18% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 5899999987457877899999999999999998
Q gi|254781202|r 3 PECIQVLNKAAGRELSKKELRRLEDGIVRAYVSL 36 (864)
Q Consensus 3 ~~Ci~~V~~algr~lsa~E~~~i~d~i~~~~r~~ 36 (864)
+.++..+.+.+||.++..|+-...+.=.+.++++
T Consensus 13 ~~a~~~L~~~lGR~Pt~~EiA~~lg~s~~e~~~~ 46 (77)
T d1rp3a1 13 KEVVEKLKEKLGREPTDEEVAKELGISTEELFKT 46 (77)
T ss_dssp HHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9999999999886979999999979499999999
Done!