RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254781202|ref|YP_003065615.1| hypothetical protein CLIBASIA_05545 [Candidatus Liberibacter asiaticus str. psy62] (864 letters) >d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]} Length = 208 Score = 33.9 bits (77), Expect = 0.048 Identities = 24/162 (14%), Positives = 56/162 (34%), Gaps = 7/162 (4%) Query: 288 MEHFGVSTNVNTILTSELASL--SKDIVIARELGPNA----DSFVKQMIVQTIANDQEAS 341 +E F + +++ + + +K+I + REL N+ D + + D Sbjct: 1 VETFAFQAEIAQLMSLIINTFYSNKEIFL-RELISNSSDALDKIRYESLTDPSKLDSGKE 59 Query: 342 AGNKVLKDWLGRNKLEVRQEAMLQMWEVMRYGETVENTGWANWMAGLRSAAGASMLGQHP 401 ++ + R V + +++ T+ +G +M L++ A SM+GQ Sbjct: 60 LHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFG 119 Query: 402 IGALLEDGFISRQMLSRVGIDKEAIQRINKMPLKERMELLSD 443 +G + + D E + + + Sbjct: 120 VGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTG 161 >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} Length = 428 Score = 31.9 bits (71), Expect = 0.23 Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 1/61 (1%) Query: 193 ENRIPQPMSVDKLRATKKDDFVRSMLDWL-DLSRYKDIDGTPLSRSEIASFVGEVFAERV 251 EN++ + D ++ K + ++ ++D G P R IA F+ + RV Sbjct: 45 ENQLCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRV 104 Query: 252 R 252 R Sbjct: 105 R 105 >d1jkma_ c.69.1.2 (A:) Carboxylesterase {Bacillus subtilis, brefeldin A esterase [TaxId: 1423]} Length = 358 Score = 31.3 bits (69), Expect = 0.30 Identities = 7/31 (22%), Positives = 11/31 (35%), Gaps = 3/31 (9%) Query: 501 GRMTDTYASLKDLKADPRLDPSIKAFFKQLD 531 GR+ D + DPR P++ Sbjct: 2 GRLGD---ESSGPRTDPRFSPAMVEALATFG 29 >d1lzla_ c.69.1.2 (A:) Heroin esterase {Rhodococcus sp. [TaxId: 1831]} Length = 317 Score = 28.6 bits (62), Expect = 1.9 Identities = 10/29 (34%), Positives = 13/29 (44%) Query: 516 DPRLDPSIKAFFKQLDDTDFTVIKRAKAM 544 P LDP + A L DF + A+A Sbjct: 3 FPTLDPELAAALTMLPKVDFADLPNARAT 31 >d1lm5a_ d.211.2.1 (A:) Desmoplakin intermediate filament-binding domains {Human (Homo sapiens) [TaxId: 9606]} Length = 196 Score = 27.6 bits (61), Expect = 4.5 Identities = 17/118 (14%), Positives = 33/118 (27%), Gaps = 10/118 (8%) Query: 572 RMSDKIAYHRKKLKNSKTLSPEQRQELQQQLADLERKEINILKDKVSNKM----HALVLD 627 ++S R + + + Q + + L+D VS + A L Sbjct: 15 KISITEGIERGIVDSITGQRLLEAQACTGGIIHPTTGQKLSLQDAVSQGVIDQDMATRLK 74 Query: 628 NVQTSVRGAMHT------SLFDRQRLGLLTYKRGTRAGEALRMFQQFTTTPTGMFLNI 679 Q + G S + + L Y+ G R E + ++ Sbjct: 75 PAQKAFIGFEGVKGKKKMSAAEAVKEKWLPYEAGQRFLEFQYLTGGLVDPEVHGRIST 132 >d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment {Human (Homo sapiens) [TaxId: 9606]} Length = 230 Score = 27.4 bits (61), Expect = 5.4 Identities = 11/65 (16%), Positives = 31/65 (47%), Gaps = 10/65 (15%) Query: 559 IKNLKDADLRDLARMSDKIAYHRKKLKNSKTLSPEQRQELQQQLADLERK----EINILK 614 I NL D + Y + + + K +S E++ +++++ L ++ ++ K Sbjct: 94 ITNLSKCDFTQM------SQYFKAQTEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHK 147 Query: 615 DKVSN 619 ++++N Sbjct: 148 ERIAN 152 >d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364 Score = 26.6 bits (58), Expect = 8.4 Identities = 26/186 (13%), Positives = 58/186 (31%), Gaps = 27/186 (14%) Query: 447 YAEGVVAHGRNMMEGSDAFQIGH--KLHSKMHKWSGAEYLDKKRISSHA------LIVYN 498 ++ G + ++ G F+ H S L+ + Sbjct: 190 FSLGCMLF--KLLRGHSPFRQHKTKDKHEIDRMTLTMAVELPDSFSPELRSLLEGLLQRD 247 Query: 499 QIGRMTDTYASLKDLKADPRLDPSIKAFFKQLDDTDFTVIKRAKAMSSPD-GYLYARTPS 557 R+ +++K P FF+ LD +++ P G + A Sbjct: 248 VNRRLGCLGRGAQEVKESP--------FFRSLD-WQMVFLQKYPPPLIPPRGEVNAADAF 298 Query: 558 TIKNLKDADLRDLARMSDKIAYHRKKLKNSKTLSPEQRQELQQQLADLERKEINILKDKV 617 I + + D + + + ++ +N E+ QQ++A+ IN D++ Sbjct: 299 DIGSFDEEDTKGIKLLDS----DQELYRNFPLTISER---WQQEVAETVFDTINAETDRL 351 Query: 618 SNKMHA 623 + Sbjct: 352 EARKKT 357 >d1f7ua3 d.67.2.1 (A:2-135) Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 134 Score = 26.7 bits (59), Expect = 8.4 Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 12/79 (15%) Query: 750 TKLVSKGDRAAIGGLLGPVPSMVTNLTSS---AVELATKDNENSKVNATKAIRKTLPFMN 806 T + +GD P+P + + AV+ A K + +A PF+ Sbjct: 60 TNTMERGDLLI------PIPRLRIKGANPKDLAVQWAEKFPCGDFLEKVEANG---PFIQ 110 Query: 807 MWYLKNSFDHLILNQILEE 825 ++ L++ IL Sbjct: 111 FFFNPQFLAKLVIPDILTR 129 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.317 0.132 0.372 Gapped Lambda K H 0.267 0.0626 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 3,070,941 Number of extensions: 145017 Number of successful extensions: 496 Number of sequences better than 10.0: 1 Number of HSP's gapped: 494 Number of HSP's successfully gapped: 19 Length of query: 864 Length of database: 2,407,596 Length adjustment: 93 Effective length of query: 771 Effective length of database: 1,130,706 Effective search space: 871774326 Effective search space used: 871774326 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 57 (26.0 bits)