BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254781202|ref|YP_003065615.1| hypothetical protein CLIBASIA_05545 [Candidatus Liberibacter asiaticus str. psy62] (864 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254781202|ref|YP_003065615.1| hypothetical protein CLIBASIA_05545 [Candidatus Liberibacter asiaticus str. psy62] Length = 864 Score = 1782 bits (4616), Expect = 0.0, Method: Compositional matrix adjust. Identities = 864/864 (100%), Positives = 864/864 (100%) Query: 1 MKPECIQVLNKAAGRELSKKELRRLEDGIVRAYVSLDGKGLSKAERYRLAGLKAEEDFQK 60 MKPECIQVLNKAAGRELSKKELRRLEDGIVRAYVSLDGKGLSKAERYRLAGLKAEEDFQK Sbjct: 1 MKPECIQVLNKAAGRELSKKELRRLEDGIVRAYVSLDGKGLSKAERYRLAGLKAEEDFQK 60 Query: 61 ELIRSVNDAIDEAYKRHQLRSDLDRVQAGVYGKSQALFNKLFFKAGSAEVPLEMKIKAAE 120 ELIRSVNDAIDEAYKRHQLRSDLDRVQAGVYGKSQALFNKLFFKAGSAEVPLEMKIKAAE Sbjct: 61 ELIRSVNDAIDEAYKRHQLRSDLDRVQAGVYGKSQALFNKLFFKAGSAEVPLEMKIKAAE 120 Query: 121 TKVLSKFNEYAEVGSKNLGFTLDKQFGLDVFDEMKGKKTQNEQASRLVKQYFETQRELHS 180 TKVLSKFNEYAEVGSKNLGFTLDKQFGLDVFDEMKGKKTQNEQASRLVKQYFETQRELHS Sbjct: 121 TKVLSKFNEYAEVGSKNLGFTLDKQFGLDVFDEMKGKKTQNEQASRLVKQYFETQRELHS 180 Query: 181 QAHEAGLDYKFFENRIPQPMSVDKLRATKKDDFVRSMLDWLDLSRYKDIDGTPLSRSEIA 240 QAHEAGLDYKFFENRIPQPMSVDKLRATKKDDFVRSMLDWLDLSRYKDIDGTPLSRSEIA Sbjct: 181 QAHEAGLDYKFFENRIPQPMSVDKLRATKKDDFVRSMLDWLDLSRYKDIDGTPLSRSEIA 240 Query: 241 SFVGEVFAERVRSTSFKDPSIPSSEVGVKREFERVFHFKDSQAHMDYMEHFGVSTNVNTI 300 SFVGEVFAERVRSTSFKDPSIPSSEVGVKREFERVFHFKDSQAHMDYMEHFGVSTNVNTI Sbjct: 241 SFVGEVFAERVRSTSFKDPSIPSSEVGVKREFERVFHFKDSQAHMDYMEHFGVSTNVNTI 300 Query: 301 LTSELASLSKDIVIARELGPNADSFVKQMIVQTIANDQEASAGNKVLKDWLGRNKLEVRQ 360 LTSELASLSKDIVIARELGPNADSFVKQMIVQTIANDQEASAGNKVLKDWLGRNKLEVRQ Sbjct: 301 LTSELASLSKDIVIARELGPNADSFVKQMIVQTIANDQEASAGNKVLKDWLGRNKLEVRQ 360 Query: 361 EAMLQMWEVMRYGETVENTGWANWMAGLRSAAGASMLGQHPIGALLEDGFISRQMLSRVG 420 EAMLQMWEVMRYGETVENTGWANWMAGLRSAAGASMLGQHPIGALLEDGFISRQMLSRVG Sbjct: 361 EAMLQMWEVMRYGETVENTGWANWMAGLRSAAGASMLGQHPIGALLEDGFISRQMLSRVG 420 Query: 421 IDKEAIQRINKMPLKERMELLSDVGLYAEGVVAHGRNMMEGSDAFQIGHKLHSKMHKWSG 480 IDKEAIQRINKMPLKERMELLSDVGLYAEGVVAHGRNMMEGSDAFQIGHKLHSKMHKWSG Sbjct: 421 IDKEAIQRINKMPLKERMELLSDVGLYAEGVVAHGRNMMEGSDAFQIGHKLHSKMHKWSG 480 Query: 481 AEYLDKKRISSHALIVYNQIGRMTDTYASLKDLKADPRLDPSIKAFFKQLDDTDFTVIKR 540 AEYLDKKRISSHALIVYNQIGRMTDTYASLKDLKADPRLDPSIKAFFKQLDDTDFTVIKR Sbjct: 481 AEYLDKKRISSHALIVYNQIGRMTDTYASLKDLKADPRLDPSIKAFFKQLDDTDFTVIKR 540 Query: 541 AKAMSSPDGYLYARTPSTIKNLKDADLRDLARMSDKIAYHRKKLKNSKTLSPEQRQELQQ 600 AKAMSSPDGYLYARTPSTIKNLKDADLRDLARMSDKIAYHRKKLKNSKTLSPEQRQELQQ Sbjct: 541 AKAMSSPDGYLYARTPSTIKNLKDADLRDLARMSDKIAYHRKKLKNSKTLSPEQRQELQQ 600 Query: 601 QLADLERKEINILKDKVSNKMHALVLDNVQTSVRGAMHTSLFDRQRLGLLTYKRGTRAGE 660 QLADLERKEINILKDKVSNKMHALVLDNVQTSVRGAMHTSLFDRQRLGLLTYKRGTRAGE Sbjct: 601 QLADLERKEINILKDKVSNKMHALVLDNVQTSVRGAMHTSLFDRQRLGLLTYKRGTRAGE 660 Query: 661 ALRMFQQFTTTPTGMFLNILDLSNSAKMPKGASMALNHVWIQYSATMALAGIGVASIKAL 720 ALRMFQQFTTTPTGMFLNILDLSNSAKMPKGASMALNHVWIQYSATMALAGIGVASIKAL Sbjct: 661 ALRMFQQFTTTPTGMFLNILDLSNSAKMPKGASMALNHVWIQYSATMALAGIGVASIKAL 720 Query: 721 LRGEDPSLPEVIYDGTLANGALLPYMDRLTKLVSKGDRAAIGGLLGPVPSMVTNLTSSAV 780 LRGEDPSLPEVIYDGTLANGALLPYMDRLTKLVSKGDRAAIGGLLGPVPSMVTNLTSSAV Sbjct: 721 LRGEDPSLPEVIYDGTLANGALLPYMDRLTKLVSKGDRAAIGGLLGPVPSMVTNLTSSAV 780 Query: 781 ELATKDNENSKVNATKAIRKTLPFMNMWYLKNSFDHLILNQILEELNPGYLDRQQSKKKK 840 ELATKDNENSKVNATKAIRKTLPFMNMWYLKNSFDHLILNQILEELNPGYLDRQQSKKKK Sbjct: 781 ELATKDNENSKVNATKAIRKTLPFMNMWYLKNSFDHLILNQILEELNPGYLDRQQSKKKK 840 Query: 841 KGIELFQNMDEGLPHRLPFPFGED 864 KGIELFQNMDEGLPHRLPFPFGED Sbjct: 841 KGIELFQNMDEGLPHRLPFPFGED 864 >537021.9.peg.1142_1 Length = 218 Score = 49.7 bits (117), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 58/235 (24%), Positives = 101/235 (42%), Gaps = 42/235 (17%) Query: 629 VQTSVRGAMHTSLFDRQRLGLLTYKRGTRAGEALRMFQQFTTTPTGMF-LNILDLSNSAK 687 VQ RG++ +++ D++ +T K G+ R+ QF P ++++++ +S Sbjct: 1 VQEHARGSVGSTIQDKR---WITGKDGS-VNNLARLMGQFLVMPISWSRMHLIEIPSSLV 56 Query: 688 MPKGASMALNHVWIQYSATMALAGI-GVASIK----ALLRGEDPSLP---EVIYDGTLAN 739 G S + Y A + GI G I+ L+ G++P L Y L N Sbjct: 57 ---GVSSQV------YRAKALVIGILGEELIRKTLVPLISGKEPQLDFSDPTEYIKALIN 107 Query: 740 GALLPYMDRLTKLVSKGDRAAIGGLLGPVPSMVTNLTSSAVELATKDNENSKVNATKA-- 797 G + + +R + S G +LGP S L + E + + +A Sbjct: 108 G--ITHYERFSPFNSSG-----WDVLGPWSSQAGKLAIAGKEAVWDEGTRKQRGKAQAQF 160 Query: 798 ----IRKTLPFMNMWYLKNSFDHLILNQILEELNPG-------YLDRQQSKKKKK 841 + +PF N+WY + +F+H + N I + LNPG Y RQ+ KK++K Sbjct: 161 GKELVNTFVPFQNLWYARGAFNHFVRNSIDDVLNPGGRARAEVYRQRQKYKKQRK 215 >gi|254781004|ref|YP_003065417.1| threonyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 652 Score = 28.1 bits (61), Expect = 0.65, Method: Compositional matrix adjust. Identities = 13/43 (30%), Positives = 25/43 (58%) Query: 741 ALLPYMDRLTKLVSKGDRAAIGGLLGPVPSMVTNLTSSAVELA 783 A+ ++R ++ + + + L P+ ++VT +TSSAVE A Sbjct: 526 AVFGSIERFIGIMIENFKGNLPLWLSPIQAIVTTITSSAVEYA 568 >gi|254780849|ref|YP_003065262.1| chaperonin GroEL [Candidatus Liberibacter asiaticus str. psy62] Length = 551 Score = 27.3 bits (59), Expect = 0.94, Method: Compositional matrix adjust. Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%) Query: 766 GPVPSMVTNLTSSAVELATKDNENSKVNATKAIRKTLPFMNMWYLKNSFD--HLILNQIL 823 G VP L +A L+ K + + + +RK L + +KN+ D LI+++I Sbjct: 410 GIVPGGGIALVRAAQALSVKGDNEDQCAGIEIVRKALSYPCRQIIKNAGDESELIVSKIQ 469 Query: 824 EELNPGY 830 E Y Sbjct: 470 ESKTANY 476 >gi|254780529|ref|YP_003064942.1| flagellar motor protein MotB [Candidatus Liberibacter asiaticus str. psy62] Length = 343 Score = 26.2 bits (56), Expect = 2.3, Method: Compositional matrix adjust. Identities = 11/29 (37%), Positives = 18/29 (62%) Query: 668 FTTTPTGMFLNILDLSNSAKMPKGASMAL 696 F TT TG+ ++I+D N+ K +S+ L Sbjct: 217 FETTRTGILISIIDQRNTPMFDKSSSIPL 245 >gi|254780787|ref|YP_003065200.1| translation initiation factor IF-2 [Candidatus Liberibacter asiaticus str. psy62] Length = 884 Score = 26.2 bits (56), Expect = 2.4, Method: Compositional matrix adjust. Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 8/103 (7%) Query: 675 MFLNILDLSNSAKMPKGASMALNHVWIQ-----YSATMALAGIGVASIKALLRGEDPSLP 729 M +ILD+ SAK L+ + +Q ++ G+ L RG P + Sbjct: 516 MGGDILDVEISAKNNLNLDKLLDAILLQAEMLDLKTSINRKAEGIVVEGKLDRGRGPVVT 575 Query: 730 EVIYDGTLANGALLPYMDRLTKLVSK-GDRAAIGGLLGPVPSM 771 ++ GTL+ G +L D+ K+ + DR G+ VPSM Sbjct: 576 VLVQKGTLSKGNILVVGDQWGKIRALFNDRGQ--GISKAVPSM 616 >gi|254780877|ref|YP_003065290.1| ATP-dependent Clp protease, ATP-binding subunit protein [Candidatus Liberibacter asiaticus str. psy62] Length = 853 Score = 26.2 bits (56), Expect = 2.7, Method: Compositional matrix adjust. Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 2/48 (4%) Query: 212 DFVRSMLDWLDLSRYKDIDGT-PLSRSEIASFVGEVFAERVRSTSFKD 258 DF ++DWL Y G PL R I ++ AERV S + D Sbjct: 789 DFDDQVIDWLSCRGYDPSYGARPLKRV-IQRYIQNPLAERVLSQTISD 835 >gi|254780521|ref|YP_003064934.1| flagellar biosynthesis repressor FlbT [Candidatus Liberibacter asiaticus str. psy62] Length = 153 Score = 25.8 bits (55), Expect = 2.9, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 20/32 (62%) Query: 602 LADLERKEINILKDKVSNKMHALVLDNVQTSV 633 L DL R+ INIL + + N+ L L N+++ + Sbjct: 74 LIDLGRRYINILFNIIQNQQLILALKNIESLI 105 >gi|254781052|ref|YP_003065465.1| dihydrolipoamide succinyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 436 Score = 25.8 bits (55), Expect = 3.4, Method: Compositional matrix adjust. Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 11/51 (21%) Query: 753 VSKGDRAAIGGLLGPVPSMVTNLTSSAVELATKDNENSKVNATKAIRKTLP 803 V+KGD GG LG + VE+A ++E+ K N+ + LP Sbjct: 79 VAKGDTVTYGGFLGYI-----------VEIARDEDESIKQNSPNSTANGLP 118 >gi|254780961|ref|YP_003065374.1| hypothetical protein CLIBASIA_04310 [Candidatus Liberibacter asiaticus str. psy62] Length = 200 Score = 25.8 bits (55), Expect = 3.5, Method: Compositional matrix adjust. Identities = 14/64 (21%), Positives = 30/64 (46%), Gaps = 3/64 (4%) Query: 336 NDQEASAGNKVLKDWLGRNKLEVRQEAMLQMWEVMRYGETVENTGWANWMAGLRSAAGAS 395 N + S N++L DW + +++ + +WE+ +Y E + ++G R+ Sbjct: 81 NQEGLSQLNRLLYDWHSKQSIDMDPQLFDFLWEIQQYFSVPE---YIYILSGYRTQETNK 137 Query: 396 MLGQ 399 ML + Sbjct: 138 MLSR 141 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.317 0.132 0.372 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 519,302 Number of Sequences: 1233 Number of extensions: 21009 Number of successful extensions: 64 Number of sequences better than 100.0: 14 Number of HSP's better than 100.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 54 Number of HSP's gapped (non-prelim): 15 length of query: 864 length of database: 328,796 effective HSP length: 82 effective length of query: 782 effective length of database: 227,690 effective search space: 178053580 effective search space used: 178053580 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 42 (20.8 bits)