BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781202|ref|YP_003065615.1| hypothetical protein
CLIBASIA_05545 [Candidatus Liberibacter asiaticus str. psy62]
         (864 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781202|ref|YP_003065615.1| hypothetical protein CLIBASIA_05545 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 864

 Score = 1782 bits (4616), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 864/864 (100%), Positives = 864/864 (100%)

Query: 1   MKPECIQVLNKAAGRELSKKELRRLEDGIVRAYVSLDGKGLSKAERYRLAGLKAEEDFQK 60
           MKPECIQVLNKAAGRELSKKELRRLEDGIVRAYVSLDGKGLSKAERYRLAGLKAEEDFQK
Sbjct: 1   MKPECIQVLNKAAGRELSKKELRRLEDGIVRAYVSLDGKGLSKAERYRLAGLKAEEDFQK 60

Query: 61  ELIRSVNDAIDEAYKRHQLRSDLDRVQAGVYGKSQALFNKLFFKAGSAEVPLEMKIKAAE 120
           ELIRSVNDAIDEAYKRHQLRSDLDRVQAGVYGKSQALFNKLFFKAGSAEVPLEMKIKAAE
Sbjct: 61  ELIRSVNDAIDEAYKRHQLRSDLDRVQAGVYGKSQALFNKLFFKAGSAEVPLEMKIKAAE 120

Query: 121 TKVLSKFNEYAEVGSKNLGFTLDKQFGLDVFDEMKGKKTQNEQASRLVKQYFETQRELHS 180
           TKVLSKFNEYAEVGSKNLGFTLDKQFGLDVFDEMKGKKTQNEQASRLVKQYFETQRELHS
Sbjct: 121 TKVLSKFNEYAEVGSKNLGFTLDKQFGLDVFDEMKGKKTQNEQASRLVKQYFETQRELHS 180

Query: 181 QAHEAGLDYKFFENRIPQPMSVDKLRATKKDDFVRSMLDWLDLSRYKDIDGTPLSRSEIA 240
           QAHEAGLDYKFFENRIPQPMSVDKLRATKKDDFVRSMLDWLDLSRYKDIDGTPLSRSEIA
Sbjct: 181 QAHEAGLDYKFFENRIPQPMSVDKLRATKKDDFVRSMLDWLDLSRYKDIDGTPLSRSEIA 240

Query: 241 SFVGEVFAERVRSTSFKDPSIPSSEVGVKREFERVFHFKDSQAHMDYMEHFGVSTNVNTI 300
           SFVGEVFAERVRSTSFKDPSIPSSEVGVKREFERVFHFKDSQAHMDYMEHFGVSTNVNTI
Sbjct: 241 SFVGEVFAERVRSTSFKDPSIPSSEVGVKREFERVFHFKDSQAHMDYMEHFGVSTNVNTI 300

Query: 301 LTSELASLSKDIVIARELGPNADSFVKQMIVQTIANDQEASAGNKVLKDWLGRNKLEVRQ 360
           LTSELASLSKDIVIARELGPNADSFVKQMIVQTIANDQEASAGNKVLKDWLGRNKLEVRQ
Sbjct: 301 LTSELASLSKDIVIARELGPNADSFVKQMIVQTIANDQEASAGNKVLKDWLGRNKLEVRQ 360

Query: 361 EAMLQMWEVMRYGETVENTGWANWMAGLRSAAGASMLGQHPIGALLEDGFISRQMLSRVG 420
           EAMLQMWEVMRYGETVENTGWANWMAGLRSAAGASMLGQHPIGALLEDGFISRQMLSRVG
Sbjct: 361 EAMLQMWEVMRYGETVENTGWANWMAGLRSAAGASMLGQHPIGALLEDGFISRQMLSRVG 420

Query: 421 IDKEAIQRINKMPLKERMELLSDVGLYAEGVVAHGRNMMEGSDAFQIGHKLHSKMHKWSG 480
           IDKEAIQRINKMPLKERMELLSDVGLYAEGVVAHGRNMMEGSDAFQIGHKLHSKMHKWSG
Sbjct: 421 IDKEAIQRINKMPLKERMELLSDVGLYAEGVVAHGRNMMEGSDAFQIGHKLHSKMHKWSG 480

Query: 481 AEYLDKKRISSHALIVYNQIGRMTDTYASLKDLKADPRLDPSIKAFFKQLDDTDFTVIKR 540
           AEYLDKKRISSHALIVYNQIGRMTDTYASLKDLKADPRLDPSIKAFFKQLDDTDFTVIKR
Sbjct: 481 AEYLDKKRISSHALIVYNQIGRMTDTYASLKDLKADPRLDPSIKAFFKQLDDTDFTVIKR 540

Query: 541 AKAMSSPDGYLYARTPSTIKNLKDADLRDLARMSDKIAYHRKKLKNSKTLSPEQRQELQQ 600
           AKAMSSPDGYLYARTPSTIKNLKDADLRDLARMSDKIAYHRKKLKNSKTLSPEQRQELQQ
Sbjct: 541 AKAMSSPDGYLYARTPSTIKNLKDADLRDLARMSDKIAYHRKKLKNSKTLSPEQRQELQQ 600

Query: 601 QLADLERKEINILKDKVSNKMHALVLDNVQTSVRGAMHTSLFDRQRLGLLTYKRGTRAGE 660
           QLADLERKEINILKDKVSNKMHALVLDNVQTSVRGAMHTSLFDRQRLGLLTYKRGTRAGE
Sbjct: 601 QLADLERKEINILKDKVSNKMHALVLDNVQTSVRGAMHTSLFDRQRLGLLTYKRGTRAGE 660

Query: 661 ALRMFQQFTTTPTGMFLNILDLSNSAKMPKGASMALNHVWIQYSATMALAGIGVASIKAL 720
           ALRMFQQFTTTPTGMFLNILDLSNSAKMPKGASMALNHVWIQYSATMALAGIGVASIKAL
Sbjct: 661 ALRMFQQFTTTPTGMFLNILDLSNSAKMPKGASMALNHVWIQYSATMALAGIGVASIKAL 720

Query: 721 LRGEDPSLPEVIYDGTLANGALLPYMDRLTKLVSKGDRAAIGGLLGPVPSMVTNLTSSAV 780
           LRGEDPSLPEVIYDGTLANGALLPYMDRLTKLVSKGDRAAIGGLLGPVPSMVTNLTSSAV
Sbjct: 721 LRGEDPSLPEVIYDGTLANGALLPYMDRLTKLVSKGDRAAIGGLLGPVPSMVTNLTSSAV 780

Query: 781 ELATKDNENSKVNATKAIRKTLPFMNMWYLKNSFDHLILNQILEELNPGYLDRQQSKKKK 840
           ELATKDNENSKVNATKAIRKTLPFMNMWYLKNSFDHLILNQILEELNPGYLDRQQSKKKK
Sbjct: 781 ELATKDNENSKVNATKAIRKTLPFMNMWYLKNSFDHLILNQILEELNPGYLDRQQSKKKK 840

Query: 841 KGIELFQNMDEGLPHRLPFPFGED 864
           KGIELFQNMDEGLPHRLPFPFGED
Sbjct: 841 KGIELFQNMDEGLPHRLPFPFGED 864


>537021.9.peg.1142_1 
          Length = 218

 Score = 49.7 bits (117), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 101/235 (42%), Gaps = 42/235 (17%)

Query: 629 VQTSVRGAMHTSLFDRQRLGLLTYKRGTRAGEALRMFQQFTTTPTGMF-LNILDLSNSAK 687
           VQ   RG++ +++ D++    +T K G+      R+  QF   P     ++++++ +S  
Sbjct: 1   VQEHARGSVGSTIQDKR---WITGKDGS-VNNLARLMGQFLVMPISWSRMHLIEIPSSLV 56

Query: 688 MPKGASMALNHVWIQYSATMALAGI-GVASIK----ALLRGEDPSLP---EVIYDGTLAN 739
              G S  +      Y A   + GI G   I+     L+ G++P L       Y   L N
Sbjct: 57  ---GVSSQV------YRAKALVIGILGEELIRKTLVPLISGKEPQLDFSDPTEYIKALIN 107

Query: 740 GALLPYMDRLTKLVSKGDRAAIGGLLGPVPSMVTNLTSSAVELATKDNENSKVNATKA-- 797
           G  + + +R +   S G       +LGP  S    L  +  E    +    +    +A  
Sbjct: 108 G--ITHYERFSPFNSSG-----WDVLGPWSSQAGKLAIAGKEAVWDEGTRKQRGKAQAQF 160

Query: 798 ----IRKTLPFMNMWYLKNSFDHLILNQILEELNPG-------YLDRQQSKKKKK 841
               +   +PF N+WY + +F+H + N I + LNPG       Y  RQ+ KK++K
Sbjct: 161 GKELVNTFVPFQNLWYARGAFNHFVRNSIDDVLNPGGRARAEVYRQRQKYKKQRK 215


>gi|254781004|ref|YP_003065417.1| threonyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 652

 Score = 28.1 bits (61), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 13/43 (30%), Positives = 25/43 (58%)

Query: 741 ALLPYMDRLTKLVSKGDRAAIGGLLGPVPSMVTNLTSSAVELA 783
           A+   ++R   ++ +  +  +   L P+ ++VT +TSSAVE A
Sbjct: 526 AVFGSIERFIGIMIENFKGNLPLWLSPIQAIVTTITSSAVEYA 568


>gi|254780849|ref|YP_003065262.1| chaperonin GroEL [Candidatus Liberibacter asiaticus str. psy62]
          Length = 551

 Score = 27.3 bits (59), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%)

Query: 766 GPVPSMVTNLTSSAVELATKDNENSKVNATKAIRKTLPFMNMWYLKNSFD--HLILNQIL 823
           G VP     L  +A  L+ K +   +    + +RK L +     +KN+ D   LI+++I 
Sbjct: 410 GIVPGGGIALVRAAQALSVKGDNEDQCAGIEIVRKALSYPCRQIIKNAGDESELIVSKIQ 469

Query: 824 EELNPGY 830
           E     Y
Sbjct: 470 ESKTANY 476


>gi|254780529|ref|YP_003064942.1| flagellar motor protein MotB [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 343

 Score = 26.2 bits (56), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 668 FTTTPTGMFLNILDLSNSAKMPKGASMAL 696
           F TT TG+ ++I+D  N+    K +S+ L
Sbjct: 217 FETTRTGILISIIDQRNTPMFDKSSSIPL 245


>gi|254780787|ref|YP_003065200.1| translation initiation factor IF-2 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 884

 Score = 26.2 bits (56), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 8/103 (7%)

Query: 675 MFLNILDLSNSAKMPKGASMALNHVWIQ-----YSATMALAGIGVASIKALLRGEDPSLP 729
           M  +ILD+  SAK        L+ + +Q        ++     G+     L RG  P + 
Sbjct: 516 MGGDILDVEISAKNNLNLDKLLDAILLQAEMLDLKTSINRKAEGIVVEGKLDRGRGPVVT 575

Query: 730 EVIYDGTLANGALLPYMDRLTKLVSK-GDRAAIGGLLGPVPSM 771
            ++  GTL+ G +L   D+  K+ +   DR    G+   VPSM
Sbjct: 576 VLVQKGTLSKGNILVVGDQWGKIRALFNDRGQ--GISKAVPSM 616


>gi|254780877|ref|YP_003065290.1| ATP-dependent Clp protease, ATP-binding subunit protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 853

 Score = 26.2 bits (56), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 212 DFVRSMLDWLDLSRYKDIDGT-PLSRSEIASFVGEVFAERVRSTSFKD 258
           DF   ++DWL    Y    G  PL R  I  ++    AERV S +  D
Sbjct: 789 DFDDQVIDWLSCRGYDPSYGARPLKRV-IQRYIQNPLAERVLSQTISD 835


>gi|254780521|ref|YP_003064934.1| flagellar biosynthesis repressor FlbT [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 153

 Score = 25.8 bits (55), Expect = 2.9,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 602 LADLERKEINILKDKVSNKMHALVLDNVQTSV 633
           L DL R+ INIL + + N+   L L N+++ +
Sbjct: 74  LIDLGRRYINILFNIIQNQQLILALKNIESLI 105


>gi|254781052|ref|YP_003065465.1| dihydrolipoamide succinyltransferase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 436

 Score = 25.8 bits (55), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 11/51 (21%)

Query: 753 VSKGDRAAIGGLLGPVPSMVTNLTSSAVELATKDNENSKVNATKAIRKTLP 803
           V+KGD    GG LG +           VE+A  ++E+ K N+  +    LP
Sbjct: 79  VAKGDTVTYGGFLGYI-----------VEIARDEDESIKQNSPNSTANGLP 118


>gi|254780961|ref|YP_003065374.1| hypothetical protein CLIBASIA_04310 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 200

 Score = 25.8 bits (55), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 14/64 (21%), Positives = 30/64 (46%), Gaps = 3/64 (4%)

Query: 336 NDQEASAGNKVLKDWLGRNKLEVRQEAMLQMWEVMRYGETVENTGWANWMAGLRSAAGAS 395
           N +  S  N++L DW  +  +++  +    +WE+ +Y    E   +   ++G R+     
Sbjct: 81  NQEGLSQLNRLLYDWHSKQSIDMDPQLFDFLWEIQQYFSVPE---YIYILSGYRTQETNK 137

Query: 396 MLGQ 399
           ML +
Sbjct: 138 MLSR 141


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.317    0.132    0.372 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 519,302
Number of Sequences: 1233
Number of extensions: 21009
Number of successful extensions: 64
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 54
Number of HSP's gapped (non-prelim): 15
length of query: 864
length of database: 328,796
effective HSP length: 82
effective length of query: 782
effective length of database: 227,690
effective search space: 178053580
effective search space used: 178053580
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 42 (20.8 bits)