Query gi|254781203|ref|YP_003065616.1| hypothetical protein CLIBASIA_05550 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 478
No_of_seqs 6 out of 8
Neff 1.7
Searched_HMMs 33803
Date Wed Jun 1 23:16:49 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781203.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1su8_A CODH 2, carbon monoxid 29.2 35 0.001 14.3 2.2 80 281-364 52-143 (195)
2 >1zw0_A Type III secretion pro 22.9 46 0.0013 13.6 2.5 27 201-230 31-57 (66)
3 >2q1k_A ASCE; helix-turn-helix 22.2 47 0.0014 13.5 2.5 27 201-230 34-60 (67)
4 >2i9c_A Hypothetical protein R 18.8 50 0.0015 13.3 1.3 15 437-451 23-37 (61)
5 >2uwj_E Type III export protei 18.6 56 0.0017 13.0 2.5 27 201-230 37-63 (70)
6 >2kfe_A Mevamp-4; alpha-helix, 18.5 57 0.0017 13.0 2.0 20 441-460 3-22 (26)
7 >1xi4_A Clathrin heavy chain; 13.8 74 0.0022 12.3 1.3 14 462-475 43-56 (58)
8 >3e59_A Pyoverdine biosynthesi 13.6 76 0.0022 12.2 1.2 17 184-200 65-81 (89)
9 >1j2g_A Uricase, urate oxidase 13.5 76 0.0022 12.2 1.4 41 217-261 202-242 (295)
10 >1q1v_A DEK protein; winged-he 12.7 80 0.0024 12.1 3.7 37 438-474 32-68 (70)
No 1
>>1su8_A CODH 2, carbon monoxide dehydrogenase 2; nickel, cluster C, oxidoreductase; HET: NFS; 1.10A {Carboxydothermus hydrogenoformans} (A:41-235)
Probab=29.17 E-value=35 Score=14.27 Aligned_cols=80 Identities=20% Similarity=0.224 Sum_probs=40.1
Q ss_pred HHHHHHHHH---HHHHHCC---CCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC------CHHHHHHCCCCCCCHHHC
Q ss_conf 657999999---9875415---6877578998775302223756588899988673------012100001434603218
Q gi|254781203|r 281 AHTDTLAHG---VDSLVRG---EYPHFDQEKLQTIADNTLEDPHFKPHLPEPEPLP------QYKEHSDRQKPSEPLAEH 348 (478)
Q Consensus 281 AH~D~L~~~---v~~l~RG---E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 348 (478)
+|.|--|+. ......| .||--|.+||..+|..-=-+..-| ++.++- .+++-++...|++-+...
T Consensus 52 aHs~H~r~~~~~L~~~a~g~~~~y~Ikd~~KL~~~A~~~GI~tegk----~~~eiA~~va~~~l~d~~~~~~~~~~~~~~ 127 (195)
T 1su8_A 52 GHSGHAKHLAHTLKKAVQGKAASYMIKDRTKLHSIAKRLGIPTEGQ----KDEDIALEVAKAALADFHEKDTPVLWVTTV 127 (195)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTCCCCCHHHHHHHHHHHTCCCTTC----CHHHHHHHHHHHHHHTTSCCSSCCHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCC----CHHHHHHHHHHHHHHHHCCCCCCHHHHHHC
T ss_conf 9999999999999999659887876176999999999809887788----789999999999988743455532477742
Q ss_pred CCCHHHHHHHHHHHHH
Q ss_conf 8831689998888631
Q gi|254781203|r 349 PHPKRKEVERELSEIE 364 (478)
Q Consensus 349 ~~~~~~~~~~~~~~~~ 364 (478)
--++|+|+-++|.-+-
T Consensus 128 ap~~R~e~w~~lgi~P 143 (195)
T 1su8_A 128 LPPSRVKVLSAHGLIP 143 (195)
T ss_dssp SCHHHHHHHHHTTCSC
T ss_pred CCHHHHHHHHHCCCCC
T ss_conf 8887799999859884
No 2
>>1zw0_A Type III secretion protein; chaperone, translocation, export; 1.80A {Yersinia pestis} PDB: 2p58_A (A:)
Probab=22.94 E-value=46 Score=13.56 Aligned_cols=27 Identities=22% Similarity=0.341 Sum_probs=19.9
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 988589799999887630346778888888
Q gi|254781203|r 201 VLEDHGYPDMAQHYRIFDMESLITDGLIGA 230 (478)
Q Consensus 201 tLe~~GY~emA~QYrV~D~QALatDgVLGa 230 (478)
-|.++|- ++||++|-.||-|+.+-|+.
T Consensus 31 ~l~rGg~---~qqyq~wQqeadAiEagl~I 57 (66)
T 1zw0_A 31 DMMRGGD---AKQYQVWQRESKALESAIAI 57 (66)
T ss_dssp HHTTSCC---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCC---HHHHHHHHHHHHHHHHHHHH
T ss_conf 9981898---99999999998999999999
No 3
>>2q1k_A ASCE; helix-turn-helix, chaperone, TTSS; 2.70A {Aeromonas hydrophila} (A:)
Probab=22.23 E-value=47 Score=13.48 Aligned_cols=27 Identities=19% Similarity=0.181 Sum_probs=20.3
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 988589799999887630346778888888
Q gi|254781203|r 201 VLEDHGYPDMAQHYRIFDMESLITDGLIGA 230 (478)
Q Consensus 201 tLe~~GY~emA~QYrV~D~QALatDgVLGa 230 (478)
-|.++|- ++||++|-.||-|+.+-|+.
T Consensus 34 ~L~rGg~---~qqyq~wQqeAdAiEagl~I 60 (67)
T 2q1k_A 34 RLLRGGT---QQQYQQWQQEADAIEAGXNI 60 (67)
T ss_dssp HTTSCCC---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCC---HHHHHHHHHHHHHHHHHHHH
T ss_conf 9980898---89999999999999999999
No 4
>>2i9c_A Hypothetical protein RPA1889; structural genomics, SAD, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Rhodopseudomonas palustris} (A:63-123)
Probab=18.83 E-value=50 Score=13.29 Aligned_cols=15 Identities=47% Similarity=0.674 Sum_probs=10.3
Q ss_pred CCCCHHHHHHHHHHH
Q ss_conf 863089999989996
Q gi|254781203|r 437 HPVEAREVLEGLQEK 451 (478)
Q Consensus 437 ~~~~~~~~~~~~~~~ 451 (478)
-|+|||++||+.-..
T Consensus 23 ~p~eAr~~le~Ia~s 37 (61)
T 2i9c_A 23 APVKAREQLEAIVSS 37 (61)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC
T ss_conf 869999999999847
No 5
>>2uwj_E Type III export protein PSCE; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} (E:)
Probab=18.59 E-value=56 Score=13.00 Aligned_cols=27 Identities=11% Similarity=0.304 Sum_probs=20.6
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 988589799999887630346778888888
Q gi|254781203|r 201 VLEDHGYPDMAQHYRIFDMESLITDGLIGA 230 (478)
Q Consensus 201 tLe~~GY~emA~QYrV~D~QALatDgVLGa 230 (478)
-|.++|- ++||++|--||-|+.+-|+.
T Consensus 37 ~l~rGg~---~qqyq~wQqeAdAIEagl~I 63 (70)
T 2uwj_E 37 ELARGAC---PERFQFLQQQARALEGGLGI 63 (70)
T ss_dssp HHHHCCC---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCC---HHHHHHHHHHHHHHHHHHHH
T ss_conf 9981898---99999999999999999999
No 6
>>2kfe_A Mevamp-4; alpha-helix, antimicrobial protein; NMR {Synthetic} (A:)
Probab=18.48 E-value=57 Score=12.99 Aligned_cols=20 Identities=45% Similarity=0.647 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999989996301243337
Q gi|254781203|r 441 AREVLEGLQEKLQGTKEIKT 460 (478)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~ 460 (478)
.||.+..|.|||.|.||--.
T Consensus 3 grefmsnlkeklsgvkekmk 22 (26)
T 2kfe_A 3 GREFMSNLKEKLSGVKEKMK 22 (26)
T ss_dssp THHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 57899989999886899876
No 7
>>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis/exocytosis complex; 7.90A {Bos taurus} (A:1077-1134)
Probab=13.83 E-value=74 Score=12.27 Aligned_cols=14 Identities=29% Similarity=0.788 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHCC
Q ss_conf 88999988898516
Q gi|254781203|r 462 SLIKEAINCFLRTG 475 (478)
Q Consensus 462 ~~~~~~~~~~~~~~ 475 (478)
..++|||.||++..
T Consensus 43 ~~v~eAIdSyIKA~ 56 (58)
T 1xi4_A 43 GMVKEAIDSYIKAD 56 (58)
T ss_pred CCHHHHHHHHHHCC
T ss_conf 95378898898578
No 8
>>3e59_A Pyoverdine biosynthesis protein PVCA; isonitrIle, paerucumarin, 2-isocyano-6,7- dihydroxycoumarin, transferase; HET: PGE; 2.10A {Pseudomonas aeruginosa} (A:161-249)
Probab=13.56 E-value=76 Score=12.22 Aligned_cols=17 Identities=18% Similarity=0.608 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 43334577775214689
Q gi|254781203|r 184 AVLNVPFGMVERGWSSK 200 (478)
Q Consensus 184 ag~NiafGMaqRG~sa~ 200 (478)
..-.|+++|.+||++=.
T Consensus 65 ~~~~~A~~MI~R~~A~s 81 (89)
T 3e59_A 65 DAKERAYGVIQRSWAWG 81 (89)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 99999999999989999
No 9
>>1j2g_A Uricase, urate oxidase; T-fold barrel, purine, oxidoreductase; HET: AZA; 2.20A {Bacillus SP} (A:1-120,A:145-319)
Probab=13.51 E-value=76 Score=12.21 Aligned_cols=41 Identities=15% Similarity=0.166 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHCHHHHHHHHHHHHHHHCCCH
Q ss_conf 303467788888888611235765221466678788877630420
Q gi|254781203|r 217 FDMESLITDGLIGAFFGGMHSKQVQNMSLRLVNDLKEGITERLPY 261 (478)
Q Consensus 217 ~D~QALatDgVLGaAFGGvh~~~~~~~s~~~~~~~~~~iTER~~~ 261 (478)
||.....+..+++-.|.|++|-|+|+-- -+.-..+-+|.|-
T Consensus 202 ~~~~~~~vr~~~l~~Fa~~~SpSVQ~TL----Y~Mg~~VL~~~Pe 242 (295)
T 1j2g_A 202 NYVAAEQIRDIATSVFHETETLSIQHLI----YLIGRRILERFPQ 242 (295)
T ss_dssp GCCCHHHHHHHHHHHHHHCCBSCHHHHH----HHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHH----HHHHHHHHHHCCC
T ss_conf 6778999999763324789987599999----9999999985997
No 10
>>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo sapiens} (A:)
Probab=12.74 E-value=80 Score=12.07 Aligned_cols=37 Identities=14% Similarity=0.229 Sum_probs=30.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 6308999998999630124333788899998889851
Q gi|254781203|r 438 PVEAREVLEGLQEKLQGTKEIKTKSLIKEAINCFLRT 474 (478)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (478)
-|-.+.|...|.++++|..--.-|..|++.|.-||..
T Consensus 32 ~vT~K~VR~~LE~~~~g~dL~~kK~~I~~~i~~~L~~ 68 (70)
T 1q1v_A 32 EVTMKQICKKVYENYPTYDLTERKDFIKTTVKELISL 68 (70)
T ss_dssp GCCHHHHHHHHHHHCSSSCCSHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 8629999999998847999488999999999999714
Done!