Query gi|254781203|ref|YP_003065616.1| hypothetical protein CLIBASIA_05550 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 478
No_of_seqs 6 out of 8
Neff 1.7
Searched_HMMs 23785
Date Wed Jun 1 01:57:23 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781203.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zw0_A Type III secretion prot 34.4 20 0.00082 14.9 2.3 27 200-229 30-56 (66)
2 1g41_A Heat shock protein HSLU 32.4 8.1 0.00034 17.2 0.1 11 31-41 58-68 (444)
3 2kfe_A Meucin-24; alpha-helix, 18.4 40 0.0017 13.0 2.0 18 441-458 3-20 (26)
4 2uwj_E Type III export protein 17.9 41 0.0017 12.9 2.5 27 201-230 37-63 (70)
5 1yzs_A Sulfiredoxin; PARB doma 17.2 40 0.0017 13.0 1.2 32 290-321 30-61 (121)
6 2q1k_A ASCE; helix-turn-helix, 16.6 44 0.0019 12.7 2.5 26 202-230 35-60 (67)
7 2jgd_A 2-oxoglutarate dehydrog 14.4 20 0.00086 14.7 -0.8 143 153-301 207-378 (933)
8 2d2s_A Exocyst complex compone 12.8 56 0.0024 12.1 3.9 12 126-137 111-122 (235)
9 1f3v_A Tumor necrosis factor r 10.0 70 0.0029 11.5 1.2 13 82-94 157-169 (179)
10 1n13_A PVLARGDC, pyruvoyl-depe 9.4 73 0.0031 11.4 0.8 16 377-392 3-18 (52)
No 1
>1zw0_A Type III secretion protein; chaperone, translocation, export; 1.80A {Yersinia pestis} PDB: 2p58_A
Probab=34.36 E-value=20 Score=14.87 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=19.9
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 998858979999988763034677888888
Q gi|254781203|r 200 KVLEDHGYPDMAQHYRIFDMESLITDGLIG 229 (478)
Q Consensus 200 ~tLe~~GY~emA~QYrV~D~QALatDgVLG 229 (478)
+-|.++|- ++||++|-.+|-|+.+-|-
T Consensus 30 r~l~rGGt---~qqyq~WQ~eadAiea~i~ 56 (66)
T 1zw0_A 30 KDMMRGGD---AKQYQVWQRESKALESAIA 56 (66)
T ss_dssp HHHTTSCC---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCC---HHHHHHHHHHHHHHHHHHH
T ss_conf 99980898---8999999999899999999
No 2
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=32.44 E-value=8.1 Score=17.22 Aligned_cols=11 Identities=45% Similarity=0.595 Sum_probs=7.0
Q ss_pred HHHHHHHHHHH
Q ss_conf 11136898613
Q gi|254781203|r 31 HTGLGKEVINM 41 (478)
Q Consensus 31 ytGLgS~Li~~ 41 (478)
-||.||-++++
T Consensus 58 PTG~GKTlLAr 68 (444)
T 1g41_A 58 PTGVGKTEIAR 68 (444)
T ss_dssp CTTSSHHHHHH
T ss_pred CCCCCHHHHHH
T ss_conf 99988899999
No 3
>2kfe_A Meucin-24; alpha-helix, antimicrobial protein; NMR {Synthetic}
Probab=18.37 E-value=40 Score=12.97 Aligned_cols=18 Identities=50% Similarity=0.743 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 899999899963012433
Q gi|254781203|r 441 AREVLEGLQEKLQGTKEI 458 (478)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~ 458 (478)
.||.+..|.|||.|.||-
T Consensus 3 grefmsnlkeklsgvkek 20 (26)
T 2kfe_A 3 GREFMSNLKEKLSGVKEK 20 (26)
T ss_dssp THHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 578999899998868998
No 4
>2uwj_E Type III export protein PSCE; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=17.88 E-value=41 Score=12.90 Aligned_cols=27 Identities=11% Similarity=0.304 Sum_probs=20.6
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 988589799999887630346778888888
Q gi|254781203|r 201 VLEDHGYPDMAQHYRIFDMESLITDGLIGA 230 (478)
Q Consensus 201 tLe~~GY~emA~QYrV~D~QALatDgVLGa 230 (478)
-|.++|- ++||++|--||-|+.+-|+.
T Consensus 37 ~l~rGg~---~qqyq~wQqeAdAIEagl~I 63 (70)
T 2uwj_E 37 ELARGAC---PERFQFLQQQARALEGGLGI 63 (70)
T ss_dssp HHHHCCC---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCC---HHHHHHHHHHHHHHHHHHHH
T ss_conf 9980898---89999999999999999999
No 5
>1yzs_A Sulfiredoxin; PARB domain fold, oxidoreductase; NMR {Homo sapiens} SCOP: d.268.1.4 PDB: 2b6f_A*
Probab=17.21 E-value=40 Score=13.00 Aligned_cols=32 Identities=31% Similarity=0.463 Sum_probs=23.2
Q ss_pred HHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf 98754156877578998775302223756588
Q gi|254781203|r 290 VDSLVRGEYPHFDQEKLQTIADNTLEDPHFKP 321 (478)
Q Consensus 290 v~~l~RGE~~~~~~~~~~~~~~~~~~~~~~~~ 321 (478)
|++|+|--.|.||++++..+++.-.+..-..|
T Consensus 30 i~~I~rp~~r~~d~e~i~eL~~SI~~~G~~~P 61 (121)
T 1yzs_A 30 LSVLIRPLPSVLDPAKVQSLVDTIREDPDSVP 61 (121)
T ss_dssp GGGEECCCCCCCCHHHHHHHHHHHHHCGGGSC
T ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 99956889998899999999999998375468
No 6
>2q1k_A ASCE; helix-turn-helix, chaperone, TTSS; 2.70A {Aeromonas hydrophila}
Probab=16.62 E-value=44 Score=12.72 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=19.3
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88589799999887630346778888888
Q gi|254781203|r 202 LEDHGYPDMAQHYRIFDMESLITDGLIGA 230 (478)
Q Consensus 202 Le~~GY~emA~QYrV~D~QALatDgVLGa 230 (478)
|.++|- ++||++|-.||-|+.+-|+.
T Consensus 35 l~rGg~---~qqyq~wQqeadAiEagl~I 60 (67)
T 2q1k_A 35 LLRGGT---QQQYQQWQQEADAIEAGMNI 60 (67)
T ss_dssp TTSCCC---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCC---HHHHHHHHHHHHHHHHHHHH
T ss_conf 980898---89999999999999999999
No 7
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=14.40 E-value=20 Score=14.75 Aligned_cols=143 Identities=17% Similarity=0.121 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHCC-----HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHH
Q ss_conf 7888878887898610-----46654456-------7877776433345777752146899885--89799999887630
Q gi|254781203|r 153 LAWREAIVHTSALLAP-----GAIASQSI-------AKTVASGAVLNVPFGMVERGWSSKVLED--HGYPDMAQHYRIFD 218 (478)
Q Consensus 153 lAl~egv~aglG~llP-----ggi~aesV-------A~~~A~Gag~NiafGMaqRG~sa~tLe~--~GY~emA~QYrV~D 218 (478)
|...|+.-.=+..--| +.-++||+ ....+.-..-.|-+||+|||-+--+-.- --|.++-+.+.-
T Consensus 207 L~~ae~FE~FL~~Kf~g~KRFslEG~EslIp~l~~li~~~~~~gv~~iviGMaHRGRLNvL~nvl~Kp~~~iF~EF~g-- 284 (933)
T 2jgd_A 207 LTAAEGLERYLGAKFPGAKRFSLEGGDALIPMLKEMIRHAGNSGTREVVLGMAHRGRLNVLVNVLGKKPQDLFDEFAG-- 284 (933)
T ss_dssp HHHHHHHHHHHHHHCCC--CCCCTTCTTHHHHHHHHHHHHHTTTCCEEEEECCSTTHHHHHHHTTCCCHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCHHHHHHHHCC--
T ss_conf 999999999998754776067347701299999999999975598359983134440578998755899999997527--
Q ss_pred HHHHHHHHH------HH------HHHHCCCHHHHHCHH-HHHHHHHHHHHHHCCCHHHCCCCCCCCCCC--CHHHHHHHH
Q ss_conf 346778888------88------886112357652214-666787888776304201102345899767--866767657
Q gi|254781203|r 219 MESLITDGL------IG------AFFGGMHSKQVQNMS-LRLVNDLKEGITERLPYKHGVKSSSPGLHT--SFDAYEAHT 283 (478)
Q Consensus 219 ~QALatDgV------LG------aAFGGvh~~~~~~~s-~~~~~~~~~~iTER~~~~H~~~~ssPGL~~--~~~a~~AH~ 283 (478)
.....++. || .--+-||-+-+-||| |-.||-|-+|.+----...++.+..--||+ -=||+.+-|
T Consensus 285 -~~~~~~~sGDVKYHlG~s~~~~~~g~~v~lsL~~NPSHLE~VnPVv~G~~RA~Q~~~~~~~~~kvlpIliHGDAAf~GQ 363 (933)
T 2jgd_A 285 -KHKEHLGTGDVKYHMGFSSDFQTDGGLVHLALAFNPSHLEIVSPVVIGSVRARLDRLDEPSSNKVLPITIHGDAAVTGQ 363 (933)
T ss_dssp -CC--CCSCCCCGGGCCEEEEEEETTEEEEEEECCCCSSTTCHHHHHHHHHHHHHTTSSSCCGGGEEEEEEEEHHHHHHC
T ss_pred -CCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCEECCCEEECEEEEEEEECCCCCCCEEEEEEEECCHHHCCC
T ss_conf -7631245677222574010001599769999616974101006534110357772026888762566786252664247
Q ss_pred HHHHHHHHHHHCCCCCCC
Q ss_conf 999999987541568775
Q gi|254781203|r 284 DTLAHGVDSLVRGEYPHF 301 (478)
Q Consensus 284 D~L~~~v~~l~RGE~~~~ 301 (478)
--. -|.++--..|.|
T Consensus 364 GVV---~Etl~ls~l~gY 378 (933)
T 2jgd_A 364 GVV---QETLNMSKARGY 378 (933)
T ss_dssp THH---HHHHHHTTSTTT
T ss_pred CHH---HHHHHCCCCCCC
T ss_conf 625---876405457886
No 8
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=12.78 E-value=56 Score=12.08 Aligned_cols=12 Identities=17% Similarity=0.296 Sum_probs=4.8
Q ss_pred HHHHHCCCCHHH
Q ss_conf 987630320123
Q gi|254781203|r 126 LYAYLSHKAESS 137 (478)
Q Consensus 126 lv~~lqgfSe~e 137 (478)
.-.+|+.-+.+=
T Consensus 111 ~~~fL~~rs~~i 122 (235)
T 2d2s_A 111 LDLFLQNRSNFI 122 (235)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999999
No 9
>1f3v_A Tumor necrosis factor receptor type 1 associated death domain protein; A-B sandwich, apoptosis; 2.00A {Homo sapiens} SCOP: d.58.22.1 PDB: 1f2h_A
Probab=9.96 E-value=70 Score=11.50 Aligned_cols=13 Identities=15% Similarity=0.079 Sum_probs=4.1
Q ss_pred HHHHHCCCCCCCC
Q ss_conf 6665227676755
Q gi|254781203|r 82 EGLTSLAPYIAGA 94 (478)
Q Consensus 82 ~~v~sLtPd~att 94 (478)
++++|+|-+++++
T Consensus 157 ~~L~sl~~~~~~q 169 (179)
T 1f3v_A 157 DALRNLKCGSGAR 169 (179)
T ss_dssp HHHHHHTTC----
T ss_pred HHHHHCCCCCCCC
T ss_conf 9997254778899
No 10
>1n13_A PVLARGDC, pyruvoyl-dependent arginine decarboxylase beta chain; pyruvoyl group, pyruvate, agmatine, lyase; 1.40A {Methanocaldococcus jannaschii} SCOP: d.155.1.2 PDB: 1mt1_A 2qqc_A 2qqd_A
Probab=9.41 E-value=73 Score=11.38 Aligned_cols=16 Identities=31% Similarity=0.250 Sum_probs=11.2
Q ss_pred HCCCCCCCCCCCCCCC
Q ss_conf 1489887866653225
Q gi|254781203|r 377 DEGSPDHSPFKGERNQ 392 (478)
Q Consensus 377 ~~~~~~~~~~~~~~~~ 392 (478)
+|-||-||||+--..-
T Consensus 3 ~~i~~ih~~~~~Pkk~ 18 (52)
T 1n13_A 3 AEINPLHAYFKLPNTV 18 (52)
T ss_dssp ----CCSCCCCCCCEE
T ss_pred CCCCCCCCCCCCCCEE
T ss_conf 6225220443589679
Done!