RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254781203|ref|YP_003065616.1| hypothetical protein
CLIBASIA_05550 [Candidatus Liberibacter asiaticus str. psy62]
         (478 letters)



>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-;
           fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
           reductase, beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688)
          Length = 258

 Score = 29.1 bits (65), Expect = 1.4
 Identities = 20/100 (20%), Positives = 38/100 (38%), Gaps = 26/100 (26%)

Query: 301 FDQEKLQTIADNTLEDPHFKPHLPEPEPLPQYKEHSDRQKPSEPLAEHPHPKRKEVEREL 360
               + Q I D  +E+        E E L    E    +  +E L E      +E+  E 
Sbjct: 33  LVTREAQ-IKDW-VEN--------ELEALKLEAEEIPSEDQNEFLLER----TREIHNE- 77

Query: 361 SEIEGAKKESSARKFFDEGSPDHSPFKGERNQKLDPMRGA 400
                  +  +A++ +  G   +  +K   + ++ P+RGA
Sbjct: 78  ----AESQLRAAQQQW--G---NDFYKR--DPRIAPLRGA 106


>1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta
           sandwich, transferase; 2.30A {Escherichia coli}
           (A:116-507)
          Length = 392

 Score = 28.4 bits (61), Expect = 1.9
 Identities = 7/49 (14%), Positives = 11/49 (22%)

Query: 279 YEAHTDTLAHGVDSLVRGEYPHFDQEKLQTIADNTLEDPHFKPHLPEPE 327
           YE H  +     D+     Y     + +              P    P 
Sbjct: 20  YEVHLGSWRRHTDNNFWLSYRELADQLVPYAKWMGFTHLELLPINEHPF 68


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
          acyl-carrier-protein, beta-ketoacyl reductase,
          beta-ketoacyl synthase, dehydratase; 4.00A
          {Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006)
          Length = 120

 Score = 27.0 bits (60), Expect = 5.0
 Identities = 7/26 (26%), Positives = 10/26 (38%), Gaps = 12/26 (46%)

Query: 41 MPARSLDKLVAPFREETHDQPNYYRG 66
          M   SL ++V            +YRG
Sbjct: 6  MSIESLVEVV------------FYRG 19


>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid
           oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A
           {Pseudomonas putida} (A:)
          Length = 380

 Score = 26.7 bits (57), Expect = 5.9
 Identities = 17/124 (13%), Positives = 30/124 (24%), Gaps = 18/124 (14%)

Query: 149 TADALAWREAIVHTSALLAPGAIASQSIAKTVASGAVLNVPFGMVERGWSSKVLEDHGYP 208
             + LA   A      L+  G      I K +A    L     ++ R      L   G  
Sbjct: 266 PMEVLAQSVAKTGKPVLIDSGFRRGSDIVKALA----LGAEAVLLGRATL-YGLAARGET 320

Query: 209 DMAQHYRIFDMESLITDGLIGAFFGGMHSKQVQNMSLRLVNDLK---------EGITERL 259
            + +   +   +   T        G      +    L+               +G     
Sbjct: 321 GVDEVLTLLKADIDRTLAQ----IGCPDITSLSPDYLQNEGVTNTAPVDHLIGKGTHAHH 376

Query: 260 PYKH 263
            + H
Sbjct: 377 HHHH 380


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.314    0.132    0.388 

Gapped
Lambda     K      H
   0.267   0.0652    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 3,650,505
Number of extensions: 167701
Number of successful extensions: 282
Number of sequences better than 10.0: 1
Number of HSP's gapped: 282
Number of HSP's successfully gapped: 9
Length of query: 478
Length of database: 4,956,049
Length adjustment: 92
Effective length of query: 386
Effective length of database: 1,845,989
Effective search space: 712551754
Effective search space used: 712551754
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (25.5 bits)