RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254781203|ref|YP_003065616.1| hypothetical protein CLIBASIA_05550 [Candidatus Liberibacter asiaticus str. psy62] (478 letters) >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688) Length = 258 Score = 29.1 bits (65), Expect = 1.4 Identities = 20/100 (20%), Positives = 38/100 (38%), Gaps = 26/100 (26%) Query: 301 FDQEKLQTIADNTLEDPHFKPHLPEPEPLPQYKEHSDRQKPSEPLAEHPHPKRKEVEREL 360 + Q I D +E+ E E L E + +E L E +E+ E Sbjct: 33 LVTREAQ-IKDW-VEN--------ELEALKLEAEEIPSEDQNEFLLER----TREIHNE- 77 Query: 361 SEIEGAKKESSARKFFDEGSPDHSPFKGERNQKLDPMRGA 400 + +A++ + G + +K + ++ P+RGA Sbjct: 78 ----AESQLRAAQQQW--G---NDFYKR--DPRIAPLRGA 106 >1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta sandwich, transferase; 2.30A {Escherichia coli} (A:116-507) Length = 392 Score = 28.4 bits (61), Expect = 1.9 Identities = 7/49 (14%), Positives = 11/49 (22%) Query: 279 YEAHTDTLAHGVDSLVRGEYPHFDQEKLQTIADNTLEDPHFKPHLPEPE 327 YE H + D+ Y + + P P Sbjct: 20 YEVHLGSWRRHTDNNFWLSYRELADQLVPYAKWMGFTHLELLPINEHPF 68 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006) Length = 120 Score = 27.0 bits (60), Expect = 5.0 Identities = 7/26 (26%), Positives = 10/26 (38%), Gaps = 12/26 (46%) Query: 41 MPARSLDKLVAPFREETHDQPNYYRG 66 M SL ++V +YRG Sbjct: 6 MSIESLVEVV------------FYRG 19 >1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} (A:) Length = 380 Score = 26.7 bits (57), Expect = 5.9 Identities = 17/124 (13%), Positives = 30/124 (24%), Gaps = 18/124 (14%) Query: 149 TADALAWREAIVHTSALLAPGAIASQSIAKTVASGAVLNVPFGMVERGWSSKVLEDHGYP 208 + LA A L+ G I K +A L ++ R L G Sbjct: 266 PMEVLAQSVAKTGKPVLIDSGFRRGSDIVKALA----LGAEAVLLGRATL-YGLAARGET 320 Query: 209 DMAQHYRIFDMESLITDGLIGAFFGGMHSKQVQNMSLRLVNDLK---------EGITERL 259 + + + + T G + L+ +G Sbjct: 321 GVDEVLTLLKADIDRTLAQ----IGCPDITSLSPDYLQNEGVTNTAPVDHLIGKGTHAHH 376 Query: 260 PYKH 263 + H Sbjct: 377 HHHH 380 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.314 0.132 0.388 Gapped Lambda K H 0.267 0.0652 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 3,650,505 Number of extensions: 167701 Number of successful extensions: 282 Number of sequences better than 10.0: 1 Number of HSP's gapped: 282 Number of HSP's successfully gapped: 9 Length of query: 478 Length of database: 4,956,049 Length adjustment: 92 Effective length of query: 386 Effective length of database: 1,845,989 Effective search space: 712551754 Effective search space used: 712551754 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 56 (25.5 bits)