BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781203|ref|YP_003065616.1| hypothetical protein
CLIBASIA_05550 [Candidatus Liberibacter asiaticus str. psy62]
         (478 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781203|ref|YP_003065616.1| hypothetical protein CLIBASIA_05550 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 478

 Score =  983 bits (2541), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 478/478 (100%), Positives = 478/478 (100%)

Query: 1   MYFNAVSDEDIRDNIKEWAQRPRVSPDIKWHTGLGKEVINMPARSLDKLVAPFREETHDQ 60
           MYFNAVSDEDIRDNIKEWAQRPRVSPDIKWHTGLGKEVINMPARSLDKLVAPFREETHDQ
Sbjct: 1   MYFNAVSDEDIRDNIKEWAQRPRVSPDIKWHTGLGKEVINMPARSLDKLVAPFREETHDQ 60

Query: 61  PNYYRGSRTDPHSVGTGAHLVEGLTSLAPYIAGAALAGKLLSFIPTPLTRLAGLALQSAP 120
           PNYYRGSRTDPHSVGTGAHLVEGLTSLAPYIAGAALAGKLLSFIPTPLTRLAGLALQSAP
Sbjct: 61  PNYYRGSRTDPHSVGTGAHLVEGLTSLAPYIAGAALAGKLLSFIPTPLTRLAGLALQSAP 120

Query: 121 LAAGALYAYLSHKAESSIHHQIEGVDKETADALAWREAIVHTSALLAPGAIASQSIAKTV 180
           LAAGALYAYLSHKAESSIHHQIEGVDKETADALAWREAIVHTSALLAPGAIASQSIAKTV
Sbjct: 121 LAAGALYAYLSHKAESSIHHQIEGVDKETADALAWREAIVHTSALLAPGAIASQSIAKTV 180

Query: 181 ASGAVLNVPFGMVERGWSSKVLEDHGYPDMAQHYRIFDMESLITDGLIGAFFGGMHSKQV 240
           ASGAVLNVPFGMVERGWSSKVLEDHGYPDMAQHYRIFDMESLITDGLIGAFFGGMHSKQV
Sbjct: 181 ASGAVLNVPFGMVERGWSSKVLEDHGYPDMAQHYRIFDMESLITDGLIGAFFGGMHSKQV 240

Query: 241 QNMSLRLVNDLKEGITERLPYKHGVKSSSPGLHTSFDAYEAHTDTLAHGVDSLVRGEYPH 300
           QNMSLRLVNDLKEGITERLPYKHGVKSSSPGLHTSFDAYEAHTDTLAHGVDSLVRGEYPH
Sbjct: 241 QNMSLRLVNDLKEGITERLPYKHGVKSSSPGLHTSFDAYEAHTDTLAHGVDSLVRGEYPH 300

Query: 301 FDQEKLQTIADNTLEDPHFKPHLPEPEPLPQYKEHSDRQKPSEPLAEHPHPKRKEVEREL 360
           FDQEKLQTIADNTLEDPHFKPHLPEPEPLPQYKEHSDRQKPSEPLAEHPHPKRKEVEREL
Sbjct: 301 FDQEKLQTIADNTLEDPHFKPHLPEPEPLPQYKEHSDRQKPSEPLAEHPHPKRKEVEREL 360

Query: 361 SEIEGAKKESSARKFFDEGSPDHSPFKGERNQKLDPMRGADFTDAPHAKFDATTFTESLP 420
           SEIEGAKKESSARKFFDEGSPDHSPFKGERNQKLDPMRGADFTDAPHAKFDATTFTESLP
Sbjct: 361 SEIEGAKKESSARKFFDEGSPDHSPFKGERNQKLDPMRGADFTDAPHAKFDATTFTESLP 420

Query: 421 HVDEQTMHRFSELKERHPVEAREVLEGLQEKLQGTKEIKTKSLIKEAINCFLRTGGSL 478
           HVDEQTMHRFSELKERHPVEAREVLEGLQEKLQGTKEIKTKSLIKEAINCFLRTGGSL
Sbjct: 421 HVDEQTMHRFSELKERHPVEAREVLEGLQEKLQGTKEIKTKSLIKEAINCFLRTGGSL 478


>gi|254781172|ref|YP_003065585.1| NAD-dependent DNA ligase LigA [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 731

 Score = 24.3 bits (51), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 272 LHTSFDAYEAHTDTLAHGVDSLVRGEYPH 300
           L + +DA +   D +AH    L R E P+
Sbjct: 44  LDSEYDALKRRCDAIAHAFPDLARSEDPN 72


>537021.9.peg.1120_1 
          Length = 40

 Score = 24.3 bits (51), Expect = 4.9,   Method: Composition-based stats.
 Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 2/31 (6%)

Query: 351 PKRKEV--ERELSEIEGAKKESSARKFFDEG 379
           P+ KEV   R L  IE   KESS RK   EG
Sbjct: 9   PREKEVVGSRTLRNIEKKPKESSTRKSSLEG 39


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.314    0.132    0.388 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 305,997
Number of Sequences: 1233
Number of extensions: 12775
Number of successful extensions: 24
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 6
length of query: 478
length of database: 328,796
effective HSP length: 77
effective length of query: 401
effective length of database: 233,855
effective search space: 93775855
effective search space used: 93775855
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 40 (20.0 bits)