Query gi|254781204|ref|YP_003065617.1| hypothetical protein CLIBASIA_05555 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 707
No_of_seqs 6 out of 8
Neff 1.8
Searched_HMMs 33803
Date Wed Jun 1 23:10:37 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781204.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1j7q_A CAVP, calcium vector p 37.7 22 0.00065 14.5 3.1 35 467-501 30-64 (86)
2 >3h6q_A Macrocypin 1A; mycocyp 36.5 8.3 0.00025 17.3 -0.1 52 607-658 23-75 (169)
3 >1u69_A Hypothetical protein; 36.1 8.7 0.00026 17.2 -0.0 16 617-632 27-42 (49)
4 >1neq_A DNA-binding protein NE 29.2 30 0.00088 13.6 3.6 30 424-453 10-39 (74)
5 >2f2c_A Cyclin homolog, V-cycl 28.0 22 0.00064 14.6 0.9 42 196-241 2-43 (146)
6 >2yqc_A UDP-N-acetylglucosamin 26.2 34 0.001 13.2 3.8 38 258-295 18-57 (63)
7 >1msw_D DNA-directed RNA polym 25.1 13 0.00039 16.0 -0.6 14 624-637 18-31 (78)
8 >1j5w_A Glycyl-tRNA synthetase 24.8 33 0.00098 13.3 1.4 68 289-369 23-94 (99)
9 >2db7_A Hairy/enhancer-OF-spli 24.7 36 0.0011 13.1 2.8 37 251-288 26-63 (64)
10 >1n0u_A EF-2, elongation facto 23.0 35 0.001 13.2 1.2 14 623-636 11-24 (48)
11 >3hrg_A Uncharacterized protei 22.2 18 0.00054 15.0 -0.4 19 612-630 34-52 (61)
12 >2ppy_A Enoyl-COA hydratase; b 21.4 41 0.0012 12.6 1.7 16 358-373 42-57 (58)
13 >2v6e_A Protelemorase; hairpin 21.0 42 0.0013 12.6 1.6 52 361-425 9-60 (71)
14 >3lhn_A Lipoprotein; structura 20.4 43 0.0013 12.6 1.2 66 616-682 42-116 (126)
No 1
>>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} (A:)
Probab=37.72 E-value=22 Score=14.50 Aligned_cols=35 Identities=14% Similarity=0.238 Sum_probs=26.6
Q ss_pred HCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
Q ss_conf 05647789999997420464314578898740677
Q gi|254781204|r 467 KRPASESVDLIRGAYNTLSDSDKEGVRSSFAHIED 501 (707)
Q Consensus 467 kAPASQsI~LL~aI~qtLSns~aeAyrA~l~qi~d 501 (707)
-+|||++|+||.-.+|+..+-..|+.----++--+
T Consensus 30 iapvsdtmdmltklgqtytkreteaimkeargpkg 64 (86)
T 1j7q_A 30 IAPVSDTMDMLTKLGQTYTKRETEAIMKEARGPKG 64 (86)
T ss_dssp CBCHHHHHHHHHHTSCCCSHHHHHHHHHHHHCSSC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 57710289999996147768889999998008887
No 2
>>3h6q_A Macrocypin 1A; mycocypin, cysteine protease inhibitor, kunitz type inhibitor, beta trefoil, hydrolase/hydrolase inhibitor complex; 1.64A {Macrolepiota procera} (A:)
Probab=36.47 E-value=8.3 Score=17.34 Aligned_cols=52 Identities=17% Similarity=0.234 Sum_probs=38.1
Q ss_pred HHCCCCCCCCCCEEEECCC-CCHHHHHHHHHHCCCCCCCCCCEEEEEEECCCC
Q ss_conf 7268202477632520368-883347777531276556525000434521785
Q gi|254781204|r 607 VLGNTPVNINESMLMPPRG-MSKTDFEDRLWYATKDTGEYDPYTIKYMNVGSG 658 (707)
Q Consensus 607 aTGGiyk~~n~g~VmpPrG-MDkstFkDRl~y~~~~~g~~~~~~i~~~~~g~~ 658 (707)
+.||.|--.|+++=++--- --.++|+-|+|-.+.--|.-+.|||.....+.+
T Consensus 23 v~GGmYAT~nG~~~iVtvA~~~pp~~erQ~W~i~~v~gked~YTI~~~~~~~s 75 (169)
T 3h6q_A 23 IPGGMYASSKDGKDVPVTAEPLGPQSKIRWWIARDPQAGDDMYTITEFRIDNS 75 (169)
T ss_dssp SSCCCEEECTTCTTSBCEEECCCTTCCCCEEEEECGGGCTTCEEEEECCSSSS
T ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEEEEECCC
T ss_conf 88742612567887841045679856167888518766885168888872376
No 3
>>1u69_A Hypothetical protein; structural genomics, MSCG, protein structure initiative (PSI), midwest center for structural genomics, MCSG; 1.60A {Pseudomonas aeruginosa PAO1} (A:74-122)
Probab=36.09 E-value=8.7 Score=17.19 Aligned_cols=16 Identities=6% Similarity=0.069 Sum_probs=12.7
Q ss_pred CCEEEECCCCCHHHHH
Q ss_conf 6325203688833477
Q gi|254781204|r 617 ESMLMPPRGMSKTDFE 632 (707)
Q Consensus 617 ~g~VmpPrGMDkstFk 632 (707)
+|.|+||+||=+++|-
T Consensus 27 gG~v~mpfG~~~DkfG 42 (49)
T 1u69_A 27 NGGEESACGWCRDKWG 42 (49)
T ss_dssp TTCEECSTTEEECTTS
T ss_pred CCCCCCCCEEEECCCC
T ss_conf 6676779855987999
No 4
>>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} (A:)
Probab=29.23 E-value=30 Score=13.60 Aligned_cols=30 Identities=7% Similarity=0.221 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHHCCCHHHHHHHHCCCHHHH
Q ss_conf 988889999752033688898718860345
Q gi|254781204|r 424 TEESFADSLRQRAGFVKKIKDDYNLTTSHF 453 (707)
Q Consensus 424 tpe~FtASLaqR~S~V~sLkr~YGt~laiF 453 (707)
.+.+|-+.|..|+.+..+|++.+|.+-+-+
T Consensus 10 h~adI~AaL~krG~sLa~lsr~~gls~stl 39 (74)
T 1neq_A 10 HRADVIAGLKKRKLSLSALSRQFGYAPTTL 39 (74)
T ss_dssp CHHHHHHHHHTTSCCHHHHHHHHSSCHHHH
T ss_pred CHHHHHHHHHHCCCCHHHHHHHHCCCHHHH
T ss_conf 999999999996887999999909987899
No 5
>>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C- terminal domain of kinase, cell cycle/transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} (A:1-41,A:150-254)
Probab=28.00 E-value=22 Score=14.55 Aligned_cols=42 Identities=31% Similarity=0.393 Sum_probs=28.8
Q ss_pred HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHH
Q ss_conf 8888521700000123568268999999998458998754412322
Q gi|254781204|r 196 SEAKEKLNTNQIIGAHARDPRVFENFMRAFYKKGHPPKDSTSLSDV 241 (707)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (707)
+..+.+||...|-.+...||||..|.--. .---|| -|||--.
T Consensus 2 ~~s~n~ln~akid~~tmkdprvlnnlklr---elllpk-~tslwvl 43 (146)
T 2f2c_A 2 ADSPNRLNRAKIDSTTMKDPRVLNNLKLR---ELLLPK-FTSLWVL 43 (146)
T ss_dssp ------CCBCCCCHHHHTCHHHHHHHHHH---HTTSCC-CSSTTCC
T ss_pred CCCCCCCCCCCCCHHHCCCHHHHHHHHHH---HHHCCC-CHHHHCC
T ss_conf 98876432136882310588999999999---986899-2388898
No 6
>>2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N-acetylglucosamine, N-acetylglucosamine- 1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A* (A:1-63)
Probab=26.21 E-value=34 Score=13.25 Aligned_cols=38 Identities=13% Similarity=0.245 Sum_probs=27.4
Q ss_pred HHHCCCCHHHCCHHHHHHHHHHHHHH-HH-HHHHHHHHHH
Q ss_conf 65221210100037899999975310-12-3346776787
Q gi|254781204|r 258 KAIGLAGWDRLDDTKRRRLLEHLSSR-DN-ALNTKLRKET 295 (707)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~ 295 (707)
-.--+.-||.|+...|..|++-|++- |- .+|.-.++-+
T Consensus 18 Q~hlf~fwdeLs~~eq~~L~~qL~~i~dp~~i~~~~~~A~ 57 (63)
T 2yqc_A 18 QDQLFQYYDSLTIDQQQEFIDQLSTIEEPAKLISTVEQAI 57 (63)
T ss_dssp CGGGGTTGGGSCHHHHHHHHHHHHTSSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 2998854504999999999999981665058999999999
No 7
>>1msw_D DNA-directed RNA polymerase, bacteriophage T7 RNA; T7RNAP elongation complex, transcription/DNA/RNA complex; 2.10A {Enterobacteria phage T7} (D:451-528)
Probab=25.14 E-value=13 Score=16.00 Aligned_cols=14 Identities=29% Similarity=0.688 Sum_probs=5.7
Q ss_pred CCCCHHHHHHHHHH
Q ss_conf 68883347777531
Q gi|254781204|r 624 RGMSKTDFEDRLWY 637 (707)
Q Consensus 624 rGMDkstFkDRl~y 637 (707)
+|+||-+|++|..+
T Consensus 18 ~G~dK~s~~eR~~w 31 (78)
T 1msw_D 18 AGVDKVPFPERIKF 31 (78)
T ss_dssp TTCCSSCHHHHHHH
T ss_pred CCCCCCCHHHHHHH
T ss_conf 68766689999999
No 8
>>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} (A:200-298)
Probab=24.79 E-value=33 Score=13.30 Aligned_cols=68 Identities=24% Similarity=0.202 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHH-HHHHCC---CCEECHHHCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 67767878777643-554037---70206123133899988715013799999998756645645443235705799999
Q gi|254781204|r 289 TKLRKETQAQARRI-DAQLNH---GITVKPSELIPLEDYTQAYGVEQGTELYNLQQFKSVAAPDVARIKLMSTFDAKKFL 364 (707)
Q Consensus 289 ~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~ldEFt~AYGv~eG~k~Y~~fq~~qiaG~DIatvq~MSt~~qtA~L 364 (707)
-++-+...++++|+ ++.|-. .-..|-|.+.-|=|=--|-+|.| -..||++||.|.-.-+.+|+
T Consensus 23 ~~~F~~~E~Ea~rli~~~L~lPAYD~~lK~SH~FNLLDARGaISVtE-------------R~~yI~riR~Lak~~A~~y~ 89 (99)
T 1j5w_A 23 FRHFDEYEKEFYRLVEKNLYLPAYDYILKCSHTFNLLDARGAISVSQ-------------RQTYVKRIQAXARKAARVFL 89 (99)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTCCCHHH-------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHH-------------HHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999866999666999999988888876357875899-------------99999999999999999999
Q ss_pred HHCCC
Q ss_conf 74086
Q gi|254781204|r 365 QKIDD 369 (707)
Q Consensus 365 eq~~P 369 (707)
++++-
T Consensus 90 ~~re~ 94 (99)
T 1j5w_A 90 EVQAN 94 (99)
T ss_dssp HHHCC
T ss_pred HHHHH
T ss_conf 98874
No 9
>>2db7_A Hairy/enhancer-OF-split related with YRPW motif 1; structural genomics, unknown function, DNA binding protein, NPPSFA; 1.90A {Homo sapiens} (A:)
Probab=24.74 E-value=36 Score=13.07 Aligned_cols=37 Identities=27% Similarity=0.445 Sum_probs=22.6
Q ss_pred HHHHHHHHHH-CCCCHHHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9998677652-2121010003789999997531012334
Q gi|254781204|r 251 EVVEDVSKAI-GLAGWDRLDDTKRRRLLEHLSSRDNALN 288 (707)
Q Consensus 251 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (707)
|.+..|++-+ .+-||| .+|.-|.|||-||.++-+.+.
T Consensus 26 eCa~EV~RyL~~~eg~d-~~~~~r~RLl~HL~~c~~~~~ 63 (64)
T 2db7_A 26 ECLAEVARYLSIIEGLD-ASDPLRVRLVSHLNNYASQRE 63 (64)
T ss_dssp HHHHHHHHHHHHTSCCC-TTCHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHCCCCCCC-CCHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999960589988-544899999999999997302
No 10
>>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} (A:222-269)
Probab=23.04 E-value=35 Score=13.18 Aligned_cols=14 Identities=43% Similarity=0.866 Sum_probs=12.7
Q ss_pred CCCCCHHHHHHHHH
Q ss_conf 36888334777753
Q gi|254781204|r 623 PRGMSKTDFEDRLW 636 (707)
Q Consensus 623 PrGMDkstFkDRl~ 636 (707)
-+|||..+|-.|||
T Consensus 11 K~gi~~~kl~k~LW 24 (48)
T 1n0u_A 11 KFGVDKAKMMDRLW 24 (48)
T ss_dssp TTTSCHHHHHHHTS
T ss_pred HHCCCHHHHHHHHH
T ss_conf 51631788999984
No 11
>>3hrg_A Uncharacterized protein BT_3980 with actin-like ATPase fold; NP_812891.1, bacteroides thetaiotaomicron BT_3980; HET: MSE UNL; 1.85A {Bacteroides thetaiotaomicron vpi-5482} (A:76-136)
Probab=22.21 E-value=18 Score=15.03 Aligned_cols=19 Identities=11% Similarity=0.085 Sum_probs=10.2
Q ss_pred CCCCCCCEEEECCCCCHHH
Q ss_conf 0247763252036888334
Q gi|254781204|r 612 PVNINESMLMPPRGMSKTD 630 (707)
Q Consensus 612 yk~~n~g~VmpPrGMDkst 630 (707)
|++-...-++.-|||||++
T Consensus 34 ~NiL~KnN~vilFg~DKst 52 (61)
T 3hrg_A 34 YNILKKNNVVIIFGIDKST 52 (61)
T ss_dssp EEEETTTTEEEEEEEEHHH
T ss_pred EEECCCCCEEEEEECCHHH
T ss_conf 8435667569999136899
No 12
>>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabolism, lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus HTA426} (A:208-265)
Probab=21.41 E-value=41 Score=12.64 Aligned_cols=16 Identities=19% Similarity=0.245 Sum_probs=11.7
Q ss_pred HHHHHHHHHCCCCCCC
Q ss_conf 5799999740866667
Q gi|254781204|r 358 FDAKKFLQKIDDEYIS 373 (707)
Q Consensus 358 ~~qtA~Leq~~P~~~~ 373 (707)
-+.+||+|++.|...+
T Consensus 42 Egv~AF~eKR~P~f~g 57 (58)
T 2ppy_A 42 EGLSAFLEKRQPNWKG 57 (58)
T ss_dssp HHHHHHHTTSCCCCCC
T ss_pred HHHHHHHCCCCCCCCC
T ss_conf 9999995899998998
No 13
>>2v6e_A Protelemorase; hairpin telomere, hydrolase, resolvase, protelomerase, DNA distortion; 3.20A {Klebsiella phage PHIKO2} (A:460-530)
Probab=20.97 E-value=42 Score=12.58 Aligned_cols=52 Identities=25% Similarity=0.275 Sum_probs=31.5
Q ss_pred HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCH
Q ss_conf 99997408666676221023444567889999999999999854377555765325075453798
Q gi|254781204|r 361 KKFLQKIDDEYISNPSLSLASTMMATKYKEILEKSHRQSMQELNQDAISWGIKYKQIDPLRFDTE 425 (707)
Q Consensus 361 tA~Leq~~P~~~~~pgegYAS~~~aaK~~DiLtKAhe~vnt~RnsDPiqyaiE~gQIdPLdF~tp 425 (707)
-+-|++++.. -+++|++ |--.+-|+.|+.+..|||- +-|-.-+|.+|-|.++
T Consensus 9 laALq~LD~~-----m~~~a~~-------da~vriHewVK~~i~qdP~-akIT~s~ir~l~~~~~ 60 (71)
T 2v6e_A 9 LAALQKLDSM-----MPDFARG-------DAGVRIHETVKQLVEQDPS-IKITNSTLRPFNFSTR 60 (71)
T ss_dssp HHHHHTSGGG-----SSSSSSS-------THHHHHHHHHHHHHHHCTT-CCCCHHHHGGGCCCTT
T ss_pred HHHHHHHCCC-----CCCHHCC-------CCHHHHHHHHHHHHHCCHH-HHHHHHHHHHCCCCCH
T ss_conf 9999974055-----7101117-------3121489999999840935-4435998875178607
No 14
>>3lhn_A Lipoprotein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2, lipid binding protein; HET: MSE GOL; 1.42A {Shewanella oneidensis} (A:)
Probab=20.36 E-value=43 Score=12.56 Aligned_cols=66 Identities=21% Similarity=0.230 Sum_probs=43.7
Q ss_pred CCCE-EEECCCCCHHHHHHHHHHCCC--------CCCCCCCEEEEEEECCCCEEEEEECCCCEECCCCCEEEEEHH
Q ss_conf 7632-520368883347777531276--------556525000434521785068983798104448987899714
Q gi|254781204|r 616 NESM-LMPPRGMSKTDFEDRLWYATK--------DTGEYDPYTIKYMNVGSGKYMIIKNGNPKVDKEGKTIIINVE 682 (707)
Q Consensus 616 n~g~-VmpPrGMDkstFkDRl~y~~~--------~~g~~~~~~i~~~~~g~~~y~i~~~~~~~~~k~g~~iii~~~ 682 (707)
-+|+ ..+-.+ .-.+|.-+--|-.+ ..+.++...+...--++++|.+..+.=..|+.+|++|--++.
T Consensus 42 C~GI~t~L~L~-~Dgty~l~~~Yl~~~~~~~~~~G~~~~~~~~~~i~l~~~~~y~v~~~~L~~ld~~g~~i~~~l~ 116 (126)
T 3lhn_A 42 CEGIQTTLTLQ-ADNSFELKSIYLGKDESIFKVAGKFDWDSNGSKITLSDGSKYLVGENQLLXLDTEGNRITGGLA 116 (126)
T ss_dssp SSEEEEEEEEC-TTSEEEEEEEEESTTCEEEEEEEEEEECTTSCEEEETTSCEEEEETTEEEEBCTTSCBCCSTTG
T ss_pred CCCEEEEEEEC-CCCCEEEEEEECCCCCCCEEEEEEEEEECCCCEEEECCCCEEEECCCEEEEECCCCCCCCCCCH
T ss_conf 99827999997-9998999999828899974874279992787699965998899889999985679996667743
Done!