Query gi|254781204|ref|YP_003065617.1| hypothetical protein CLIBASIA_05555 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 707 No_of_seqs 6 out of 8 Neff 1.8 Searched_HMMs 13730 Date Wed Jun 1 12:05:07 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781204.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1j7qa_ a.39.1.5 (A:) Calcium 29.0 12 0.00089 13.6 3.1 34 467-500 30-63 (86) 2 d2db7a1 a.273.1.1 (A:3-57) Hai 28.0 13 0.00093 13.5 3.7 34 246-283 18-51 (55) 3 d1nera_ a.35.1.2 (A:) Ner {Bac 24.5 15 0.0011 13.0 3.2 28 424-451 10-37 (74) 4 d1j5wa_ d.104.1.1 (A:) Glycyl- 23.5 15 0.0011 13.0 1.4 23 346-368 258-280 (281) 5 d1u6za2 c.55.1.8 (A:12-135) Ex 21.8 13 0.00094 13.4 0.8 32 433-464 85-116 (124) 6 d1or4a_ a.1.1.2 (A:) Heme-base 20.1 18 0.0013 12.5 8.5 148 51-227 8-158 (169) 7 d2o35a1 a.293.1.1 (A:2-80) Hyp 17.5 20 0.0015 12.1 1.7 20 272-291 15-34 (79) 8 d1ef8a_ c.14.1.3 (A:) Methylma 17.1 21 0.0015 12.0 1.7 17 358-374 245-261 (261) 9 d1t6ca1 c.55.1.8 (A:7-132) Exo 15.8 22 0.0016 11.8 1.9 32 433-464 88-119 (126) 10 d1r8ja1 a.186.1.1 (A:177-282) 15.3 3.3 0.00024 17.4 -3.5 86 352-449 3-88 (106) No 1 >d1j7qa_ a.39.1.5 (A:) Calcium vector protein {Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]} Probab=29.03 E-value=12 Score=13.58 Aligned_cols=34 Identities=15% Similarity=0.244 Sum_probs=25.6 Q ss_pred HCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC Q ss_conf 0564778999999742046431457889874067 Q gi|254781204|r 467 KRPASESVDLIRGAYNTLSDSDKEGVRSSFAHIE 500 (707) Q Consensus 467 kAPASQsI~LL~aI~qtLSns~aeAyrA~l~qi~ 500 (707) -+|||++|+||.-.+|+..+-..|+.----++-- T Consensus 30 iapvsdtmdmltklgqtytkreteaimkeargpk 63 (86) T d1j7qa_ 30 IAPVSDTMDMLTKLGQTYTKRETEAIMKEARGPK 63 (86) T ss_dssp CBCHHHHHHHHHHTSCCCSHHHHHHHHHHHHCSS T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 5771028999999614776888999999800888 No 2 >d2db7a1 a.273.1.1 (A:3-57) Hairy/enhancer-of-split related with YRPW motif protein 1; HESR-1 {Human (Homo sapiens) [TaxId: 9606]} Probab=27.96 E-value=13 Score=13.45 Aligned_cols=34 Identities=41% Similarity=0.458 Sum_probs=19.7 Q ss_pred HHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHH Q ss_conf 56568999867765221210100037899999975310 Q gi|254781204|r 246 RERSLEVVEDVSKAIGLAGWDRLDDTKRRRLLEHLSSR 283 (707) Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (707) +|-..||.--++..-|+ | .+|.-|.|||.||++- T Consensus 18 ~ECa~EV~RyL~~~eg~---d-~~d~~r~RLl~HL~~C 51 (55) T d2db7a1 18 RECLAEVARYLSIIEGL---D-ASDPLRVRLVSHLNNY 51 (55) T ss_dssp HHHHHHHHHHHHHTSCC---C-TTCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCCC---C-CCHHHHHHHHHHHHHH T ss_conf 99999999996235889---9-5469999999999998 No 3 >d1nera_ a.35.1.2 (A:) Ner {Bacteriophage mu [TaxId: 10677]} Probab=24.49 E-value=15 Score=13.04 Aligned_cols=28 Identities=7% Similarity=0.216 Sum_probs=24.3 Q ss_pred CHHHHHHHHHHHCCCHHHHHHHHCCCHH Q ss_conf 9888899997520336888987188603 Q gi|254781204|r 424 TEESFADSLRQRAGFVKKIKDDYNLTTS 451 (707) Q Consensus 424 tpe~FtASLaqR~S~V~sLkr~YGt~la 451 (707) .+.+|-+.|..|+.+..+|++.+|++-. T Consensus 10 h~adI~AaL~krG~sLa~lsr~~gls~s 37 (74) T d1nera_ 10 HRADVIAGLKKRKLSLSALSRQFGYAPT 37 (74) T ss_dssp CHHHHHHHHTTSSCCHHHHHHHHSCCHH T ss_pred CHHHHHHHHHHCCCCHHHHHHHHCCCHH T ss_conf 9999999999968879999999099878 No 4 >d1j5wa_ d.104.1.1 (A:) Glycyl-tRNA synthetase (GlyRS) alpha chain {Thermotoga maritima [TaxId: 2336]} Probab=23.52 E-value=15 Score=13.04 Aligned_cols=23 Identities=30% Similarity=0.333 Sum_probs=20.9 Q ss_pred HHHHHHHHCCCHHHHHHHHHHCC Q ss_conf 56454432357057999997408 Q gi|254781204|r 346 APDVARIKLMSTFDAKKFLQKID 368 (707) Q Consensus 346 G~DIatvq~MSt~~qtA~Leq~~ 368 (707) ..||++||.|+-..+++|+++++ T Consensus 258 a~YI~RIR~LAk~~a~~yle~r~ 280 (281) T d1j5wa_ 258 QTYVKRIQAMARKAARVFLEVQA 280 (281) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC T ss_pred HHHHHHHHHHHHHHHHHHHHHHC T ss_conf 99999999999999999998645 No 5 >d1u6za2 c.55.1.8 (A:12-135) Exopolyphosphatase Ppx {Escherichia coli [TaxId: 562]} Probab=21.81 E-value=13 Score=13.41 Aligned_cols=32 Identities=16% Similarity=0.161 Sum_probs=27.2 Q ss_pred HHHCCCHHHHHHHHCCCHHHHCHHHHHHHHHH Q ss_conf 75203368889871886034587889999999 Q gi|254781204|r 433 RQRAGFVKKIKDDYNLTTSHFNKTEENQLRTQ 464 (707) Q Consensus 433 aqR~S~V~sLkr~YGt~laiFSkqEA~qLSqq 464 (707) .|+..++..+++..|++.-++|.+||+.|+-+ T Consensus 85 ~N~~~~~~~i~~~~gi~i~ilsg~eEa~l~~~ 116 (124) T d1u6za2 85 LNATDFLKRAEKVIPYPIEIISGNEEARLIFM 116 (124) T ss_dssp TTHHHHHHHHTTTCSSCEEECCHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHCCCEEEECHHHHHHHHHH T ss_conf 66889999999986999799688999999998 No 6 >d1or4a_ a.1.1.2 (A:) Heme-based aerotactic transducer HemAT, sensor domain {Bacillus subtilis [TaxId: 1423]} Probab=20.12 E-value=18 Score=12.47 Aligned_cols=148 Identities=10% Similarity=0.109 Sum_probs=69.6 Q ss_pred CCCCCCCCCCCHH--HHHHHHHHHHHHHHCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 2320024541001--2389877677654101211333-213568887300236689999742125789999888766556 Q gi|254781204|r 51 DNAFATANTRYTE--LSFKAVQDFHDFTNSLDTRDSL-QAGDKIKEYVDGRIRSAYDRFLSSISHRDVRKKFQAQVEHDI 127 (707) Q Consensus 51 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (707) +++......+-|+ .+|+---.|.+||.. ....| .....+.++.+.-+..-|++++ +|.++++-|.- +. T Consensus 8 ~~~~~~~~~~~t~~~~~~~~~l~f~~lt~~--d~~~L~~~~p~i~~~~~~i~d~FY~~l~---~~Pe~~~~f~~---~~- 78 (169) T d1or4a_ 8 SNGQQKNRIQLTNKHADVKKQLKMVRLGDA--ELYVLEQLQPLIQENIVNIVDAFYKNLD---HESSLMDIIND---HS- 78 (169) T ss_dssp CGGGGCSCEECCGGGHHHHHHHHHTTCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHT---TSHHHHHHHHH---HC- T ss_pred HCCCHHHHHHCCCHHHHHHHHHHHCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCHHHHHHHCC---CC- T ss_conf 045401377355057999999988399999--9999999899999989999999999985---59899997748---54- Q ss_pred HHHHCCCCEEEECCCCCCCCCCCCEEEEHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCC Q ss_conf 55301660257323100000155202002345543077630499999988853101762146578888888852170000 Q gi|254781204|r 128 RDYHTKGVDIQIGATQRAQEDNLNMTVGLAAAHVLHDPSNENYFQRVQSITDHINSLPIDLRLKQKLLSEAKEKLNTNQI 207 (707) Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (707) ++..-+..|... -..++..+-.+.|+.++..|-..-..+.++.+.---..+...+-+- .+ T Consensus 79 ----------~~erlk~~~~~~--------~~~lf~g~~D~~y~~~~~~IG~~H~rigl~p~~y~~~~~~l~~~l~--~~ 138 (169) T d1or4a_ 79 ----------SVDRLKQTLKRH--------IQEMFAGVIDDEFIEKRNRIASIHLRIGLLPKWYMGAFQELLLSMI--DI 138 (169) T ss_dssp ----------CHHHHHHHHHHH--------HHHTTSSCEEHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH--HH T ss_pred ----------CHHHHHHHHHHH--------HHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH--HH T ss_conf ----------318999999999--------9998758855999999999999998829988999999999999999--99 Q ss_pred CCCCCCCHHHHHHHHHHHHH Q ss_conf 01235682689999999984 Q gi|254781204|r 208 IGAHARDPRVFENFMRAFYK 227 (707) Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~ 227 (707) +....++|.-....++|+.| T Consensus 139 l~~~~~~~~~~~~~~~Al~K 158 (169) T d1or4a_ 139 YEASITNQQELLKAIKATTK 158 (169) T ss_dssp HHHHCCSHHHHHHHHHHHHH T ss_pred HHHHCCCHHHHHHHHHHHHH T ss_conf 98746999999999999999 No 7 >d2o35a1 a.293.1.1 (A:2-80) Hypothetical protein SMc04008 {Rhizobium meliloti [TaxId: 382]} Probab=17.45 E-value=20 Score=12.07 Aligned_cols=20 Identities=50% Similarity=0.662 Sum_probs=11.4 Q ss_pred HHHHHHHHHHHHHHHHHHHH Q ss_conf 89999997531012334677 Q gi|254781204|r 272 KRRRLLEHLSSRDNALNTKL 291 (707) Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~ 291 (707) --|||+.||..|...-|-.| T Consensus 15 aFrrL~~HL~~r~dVQNIDL 34 (79) T d2o35a1 15 VFRRLLEHLRERSDVQNIDL 34 (79) T ss_dssp HHHHHHHHHHHTTTSCHHHH T ss_pred HHHHHHHHHHHCCCCHHHHH T ss_conf 99999999873764203699 No 8 >d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]} Probab=17.06 E-value=21 Score=12.01 Aligned_cols=17 Identities=18% Similarity=0.391 Sum_probs=13.9 Q ss_pred HHHHHHHHHCCCCCCCC Q ss_conf 57999997408666676 Q gi|254781204|r 358 FDAKKFLQKIDDEYISN 374 (707) Q Consensus 358 ~~qtA~Leq~~P~~~~~ 374 (707) -+++||+|+++|...++ T Consensus 245 Egi~AfleKR~P~f~G~ 261 (261) T d1ef8a_ 245 EGMNAFLEKRKPNFVGH 261 (261) T ss_dssp HHHHHHHTTSCCCCCCC T ss_pred HHHHHHHCCCCCCCCCC T ss_conf 99999848999969998 No 9 >d1t6ca1 c.55.1.8 (A:7-132) Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 63363]} Probab=15.77 E-value=22 Score=11.81 Aligned_cols=32 Identities=13% Similarity=0.302 Sum_probs=24.9 Q ss_pred HHHCCCHHHHHHHHCCCHHHHCHHHHHHHHHH Q ss_conf 75203368889871886034587889999999 Q gi|254781204|r 433 RQRAGFVKKIKDDYNLTTSHFNKTEENQLRTQ 464 (707) Q Consensus 433 aqR~S~V~sLkr~YGt~laiFSkqEA~qLSqq 464 (707) .|+..++..+++..|++.-++|.+||+.|+-+ T Consensus 88 ~N~~~~~~~i~~~tgi~i~Iisg~eEa~l~~~ 119 (126) T d1t6ca1 88 KNAEEFLERVKREVGLVVEVITPEQEGRYAYL 119 (126) T ss_dssp TTHHHHHHHHHHHTCCCEEECCHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHCCCEEEECHHHHHHHHHH T ss_conf 59999999999987999699078999999999 No 10 >d1r8ja1 a.186.1.1 (A:177-282) Circadian clock protein KaiA, C-terminal domain {Synechococcus elongatus PCC 7942 [TaxId: 1140]} Probab=15.32 E-value=3.3 Score=17.40 Aligned_cols=86 Identities=20% Similarity=0.300 Sum_probs=36.7 Q ss_pred HHCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCHHHHHHH Q ss_conf 32357057999997408666676221023444567889999999999999854377555765325075453798888999 Q gi|254781204|r 352 IKLMSTFDAKKFLQKIDDEYISNPSLSLASTMMATKYKEILEKSHRQSMQELNQDAISWGIKYKQIDPLRFDTEESFADS 431 (707) Q Consensus 352 vq~MSt~~qtA~Leq~~P~~~~~pgegYAS~~~aaK~~DiLtKAhe~vnt~RnsDPiqyaiE~gQIdPLdF~tpe~FtAS 431 (707) +++|||..++.||++++-+|-.- -.+|-+. .+++-+.+-.--|-.|-+-+-.-|+--|-|.-.+.|.-- T Consensus 3 lr~L~p~ErqeLL~~Lk~~YR~I-lLsYF~~----------d~~~nq~id~fVn~aFfadi~v~~ivEiHmel~deFskq 71 (106) T d1r8ja1 3 LRNLPAYESQKLHQAMQTSYREI-VLSYFSP----------NSNLNQSIDNFVNMAFFADVPVTKVVEIHMELMDEFAKK 71 (106) T ss_dssp TTTSCHHHHHHHHHHHHHHHHHH-HHHHTST----------TCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH T ss_pred CCCCCHHHHHHHHHHHHHHHHHH-HHHHCCC----------CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH T ss_conf 01089999999999999999999-9999099----------578899999999999971774889999999999999999 Q ss_pred HHHHCCCHHHHHHHHCCC Q ss_conf 975203368889871886 Q gi|254781204|r 432 LRQRAGFVKKIKDDYNLT 449 (707) Q Consensus 432 LaqR~S~V~sLkr~YGt~ 449 (707) |.--+-+-+-| -+|-++ T Consensus 72 LkLEGrs~e~L-lDYRLt 88 (106) T d1r8ja1 72 LRVEGRSEDIL-LDYRLT 88 (106) T ss_dssp HHTTTCCTTGG-GGGHHH T ss_pred HHHCCCCHHHH-HHHHHH T ss_conf 76546618999-999999 Done!