Query gi|254781204|ref|YP_003065617.1| hypothetical protein CLIBASIA_05555 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 707
No_of_seqs 6 out of 8
Neff 1.8
Searched_HMMs 13730
Date Wed Jun 1 12:05:07 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781204.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1j7qa_ a.39.1.5 (A:) Calcium 29.0 12 0.00089 13.6 3.1 34 467-500 30-63 (86)
2 d2db7a1 a.273.1.1 (A:3-57) Hai 28.0 13 0.00093 13.5 3.7 34 246-283 18-51 (55)
3 d1nera_ a.35.1.2 (A:) Ner {Bac 24.5 15 0.0011 13.0 3.2 28 424-451 10-37 (74)
4 d1j5wa_ d.104.1.1 (A:) Glycyl- 23.5 15 0.0011 13.0 1.4 23 346-368 258-280 (281)
5 d1u6za2 c.55.1.8 (A:12-135) Ex 21.8 13 0.00094 13.4 0.8 32 433-464 85-116 (124)
6 d1or4a_ a.1.1.2 (A:) Heme-base 20.1 18 0.0013 12.5 8.5 148 51-227 8-158 (169)
7 d2o35a1 a.293.1.1 (A:2-80) Hyp 17.5 20 0.0015 12.1 1.7 20 272-291 15-34 (79)
8 d1ef8a_ c.14.1.3 (A:) Methylma 17.1 21 0.0015 12.0 1.7 17 358-374 245-261 (261)
9 d1t6ca1 c.55.1.8 (A:7-132) Exo 15.8 22 0.0016 11.8 1.9 32 433-464 88-119 (126)
10 d1r8ja1 a.186.1.1 (A:177-282) 15.3 3.3 0.00024 17.4 -3.5 86 352-449 3-88 (106)
No 1
>d1j7qa_ a.39.1.5 (A:) Calcium vector protein {Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]}
Probab=29.03 E-value=12 Score=13.58 Aligned_cols=34 Identities=15% Similarity=0.244 Sum_probs=25.6
Q ss_pred HCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
Q ss_conf 0564778999999742046431457889874067
Q gi|254781204|r 467 KRPASESVDLIRGAYNTLSDSDKEGVRSSFAHIE 500 (707)
Q Consensus 467 kAPASQsI~LL~aI~qtLSns~aeAyrA~l~qi~ 500 (707)
-+|||++|+||.-.+|+..+-..|+.----++--
T Consensus 30 iapvsdtmdmltklgqtytkreteaimkeargpk 63 (86)
T d1j7qa_ 30 IAPVSDTMDMLTKLGQTYTKRETEAIMKEARGPK 63 (86)
T ss_dssp CBCHHHHHHHHHHTSCCCSHHHHHHHHHHHHCSS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 5771028999999614776888999999800888
No 2
>d2db7a1 a.273.1.1 (A:3-57) Hairy/enhancer-of-split related with YRPW motif protein 1; HESR-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.96 E-value=13 Score=13.45 Aligned_cols=34 Identities=41% Similarity=0.458 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHH
Q ss_conf 56568999867765221210100037899999975310
Q gi|254781204|r 246 RERSLEVVEDVSKAIGLAGWDRLDDTKRRRLLEHLSSR 283 (707)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (707)
+|-..||.--++..-|+ | .+|.-|.|||.||++-
T Consensus 18 ~ECa~EV~RyL~~~eg~---d-~~d~~r~RLl~HL~~C 51 (55)
T d2db7a1 18 RECLAEVARYLSIIEGL---D-ASDPLRVRLVSHLNNY 51 (55)
T ss_dssp HHHHHHHHHHHHHTSCC---C-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCC---C-CCHHHHHHHHHHHHHH
T ss_conf 99999999996235889---9-5469999999999998
No 3
>d1nera_ a.35.1.2 (A:) Ner {Bacteriophage mu [TaxId: 10677]}
Probab=24.49 E-value=15 Score=13.04 Aligned_cols=28 Identities=7% Similarity=0.216 Sum_probs=24.3
Q ss_pred CHHHHHHHHHHHCCCHHHHHHHHCCCHH
Q ss_conf 9888899997520336888987188603
Q gi|254781204|r 424 TEESFADSLRQRAGFVKKIKDDYNLTTS 451 (707)
Q Consensus 424 tpe~FtASLaqR~S~V~sLkr~YGt~la 451 (707)
.+.+|-+.|..|+.+..+|++.+|++-.
T Consensus 10 h~adI~AaL~krG~sLa~lsr~~gls~s 37 (74)
T d1nera_ 10 HRADVIAGLKKRKLSLSALSRQFGYAPT 37 (74)
T ss_dssp CHHHHHHHHTTSSCCHHHHHHHHSCCHH
T ss_pred CHHHHHHHHHHCCCCHHHHHHHHCCCHH
T ss_conf 9999999999968879999999099878
No 4
>d1j5wa_ d.104.1.1 (A:) Glycyl-tRNA synthetase (GlyRS) alpha chain {Thermotoga maritima [TaxId: 2336]}
Probab=23.52 E-value=15 Score=13.04 Aligned_cols=23 Identities=30% Similarity=0.333 Sum_probs=20.9
Q ss_pred HHHHHHHHCCCHHHHHHHHHHCC
Q ss_conf 56454432357057999997408
Q gi|254781204|r 346 APDVARIKLMSTFDAKKFLQKID 368 (707)
Q Consensus 346 G~DIatvq~MSt~~qtA~Leq~~ 368 (707)
..||++||.|+-..+++|+++++
T Consensus 258 a~YI~RIR~LAk~~a~~yle~r~ 280 (281)
T d1j5wa_ 258 QTYVKRIQAMARKAARVFLEVQA 280 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999999999998645
No 5
>d1u6za2 c.55.1.8 (A:12-135) Exopolyphosphatase Ppx {Escherichia coli [TaxId: 562]}
Probab=21.81 E-value=13 Score=13.41 Aligned_cols=32 Identities=16% Similarity=0.161 Sum_probs=27.2
Q ss_pred HHHCCCHHHHHHHHCCCHHHHCHHHHHHHHHH
Q ss_conf 75203368889871886034587889999999
Q gi|254781204|r 433 RQRAGFVKKIKDDYNLTTSHFNKTEENQLRTQ 464 (707)
Q Consensus 433 aqR~S~V~sLkr~YGt~laiFSkqEA~qLSqq 464 (707)
.|+..++..+++..|++.-++|.+||+.|+-+
T Consensus 85 ~N~~~~~~~i~~~~gi~i~ilsg~eEa~l~~~ 116 (124)
T d1u6za2 85 LNATDFLKRAEKVIPYPIEIISGNEEARLIFM 116 (124)
T ss_dssp TTHHHHHHHHTTTCSSCEEECCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCEEEECHHHHHHHHHH
T ss_conf 66889999999986999799688999999998
No 6
>d1or4a_ a.1.1.2 (A:) Heme-based aerotactic transducer HemAT, sensor domain {Bacillus subtilis [TaxId: 1423]}
Probab=20.12 E-value=18 Score=12.47 Aligned_cols=148 Identities=10% Similarity=0.109 Sum_probs=69.6
Q ss_pred CCCCCCCCCCCHH--HHHHHHHHHHHHHHCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2320024541001--2389877677654101211333-213568887300236689999742125789999888766556
Q gi|254781204|r 51 DNAFATANTRYTE--LSFKAVQDFHDFTNSLDTRDSL-QAGDKIKEYVDGRIRSAYDRFLSSISHRDVRKKFQAQVEHDI 127 (707)
Q Consensus 51 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (707)
+++......+-|+ .+|+---.|.+||.. ....| .....+.++.+.-+..-|++++ +|.++++-|.- +.
T Consensus 8 ~~~~~~~~~~~t~~~~~~~~~l~f~~lt~~--d~~~L~~~~p~i~~~~~~i~d~FY~~l~---~~Pe~~~~f~~---~~- 78 (169)
T d1or4a_ 8 SNGQQKNRIQLTNKHADVKKQLKMVRLGDA--ELYVLEQLQPLIQENIVNIVDAFYKNLD---HESSLMDIIND---HS- 78 (169)
T ss_dssp CGGGGCSCEECCGGGHHHHHHHHHTTCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHT---TSHHHHHHHHH---HC-
T ss_pred HCCCHHHHHHCCCHHHHHHHHHHHCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCHHHHHHHCC---CC-
T ss_conf 045401377355057999999988399999--9999999899999989999999999985---59899997748---54-
Q ss_pred HHHHCCCCEEEECCCCCCCCCCCCEEEEHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 55301660257323100000155202002345543077630499999988853101762146578888888852170000
Q gi|254781204|r 128 RDYHTKGVDIQIGATQRAQEDNLNMTVGLAAAHVLHDPSNENYFQRVQSITDHINSLPIDLRLKQKLLSEAKEKLNTNQI 207 (707)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (707)
++..-+..|... -..++..+-.+.|+.++..|-..-..+.++.+.---..+...+-+- .+
T Consensus 79 ----------~~erlk~~~~~~--------~~~lf~g~~D~~y~~~~~~IG~~H~rigl~p~~y~~~~~~l~~~l~--~~ 138 (169)
T d1or4a_ 79 ----------SVDRLKQTLKRH--------IQEMFAGVIDDEFIEKRNRIASIHLRIGLLPKWYMGAFQELLLSMI--DI 138 (169)
T ss_dssp ----------CHHHHHHHHHHH--------HHHTTSSCEEHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH--HH
T ss_pred ----------CHHHHHHHHHHH--------HHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH--HH
T ss_conf ----------318999999999--------9998758855999999999999998829988999999999999999--99
Q ss_pred CCCCCCCHHHHHHHHHHHHH
Q ss_conf 01235682689999999984
Q gi|254781204|r 208 IGAHARDPRVFENFMRAFYK 227 (707)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~ 227 (707)
+....++|.-....++|+.|
T Consensus 139 l~~~~~~~~~~~~~~~Al~K 158 (169)
T d1or4a_ 139 YEASITNQQELLKAIKATTK 158 (169)
T ss_dssp HHHHCCSHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
T ss_conf 98746999999999999999
No 7
>d2o35a1 a.293.1.1 (A:2-80) Hypothetical protein SMc04008 {Rhizobium meliloti [TaxId: 382]}
Probab=17.45 E-value=20 Score=12.07 Aligned_cols=20 Identities=50% Similarity=0.662 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999997531012334677
Q gi|254781204|r 272 KRRRLLEHLSSRDNALNTKL 291 (707)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~ 291 (707)
--|||+.||..|...-|-.|
T Consensus 15 aFrrL~~HL~~r~dVQNIDL 34 (79)
T d2o35a1 15 VFRRLLEHLRERSDVQNIDL 34 (79)
T ss_dssp HHHHHHHHHHHTTTSCHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHH
T ss_conf 99999999873764203699
No 8
>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]}
Probab=17.06 E-value=21 Score=12.01 Aligned_cols=17 Identities=18% Similarity=0.391 Sum_probs=13.9
Q ss_pred HHHHHHHHHCCCCCCCC
Q ss_conf 57999997408666676
Q gi|254781204|r 358 FDAKKFLQKIDDEYISN 374 (707)
Q Consensus 358 ~~qtA~Leq~~P~~~~~ 374 (707)
-+++||+|+++|...++
T Consensus 245 Egi~AfleKR~P~f~G~ 261 (261)
T d1ef8a_ 245 EGMNAFLEKRKPNFVGH 261 (261)
T ss_dssp HHHHHHHTTSCCCCCCC
T ss_pred HHHHHHHCCCCCCCCCC
T ss_conf 99999848999969998
No 9
>d1t6ca1 c.55.1.8 (A:7-132) Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 63363]}
Probab=15.77 E-value=22 Score=11.81 Aligned_cols=32 Identities=13% Similarity=0.302 Sum_probs=24.9
Q ss_pred HHHCCCHHHHHHHHCCCHHHHCHHHHHHHHHH
Q ss_conf 75203368889871886034587889999999
Q gi|254781204|r 433 RQRAGFVKKIKDDYNLTTSHFNKTEENQLRTQ 464 (707)
Q Consensus 433 aqR~S~V~sLkr~YGt~laiFSkqEA~qLSqq 464 (707)
.|+..++..+++..|++.-++|.+||+.|+-+
T Consensus 88 ~N~~~~~~~i~~~tgi~i~Iisg~eEa~l~~~ 119 (126)
T d1t6ca1 88 KNAEEFLERVKREVGLVVEVITPEQEGRYAYL 119 (126)
T ss_dssp TTHHHHHHHHHHHTCCCEEECCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCEEEECHHHHHHHHHH
T ss_conf 59999999999987999699078999999999
No 10
>d1r8ja1 a.186.1.1 (A:177-282) Circadian clock protein KaiA, C-terminal domain {Synechococcus elongatus PCC 7942 [TaxId: 1140]}
Probab=15.32 E-value=3.3 Score=17.40 Aligned_cols=86 Identities=20% Similarity=0.300 Sum_probs=36.7
Q ss_pred HHCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCHHHHHHH
Q ss_conf 32357057999997408666676221023444567889999999999999854377555765325075453798888999
Q gi|254781204|r 352 IKLMSTFDAKKFLQKIDDEYISNPSLSLASTMMATKYKEILEKSHRQSMQELNQDAISWGIKYKQIDPLRFDTEESFADS 431 (707)
Q Consensus 352 vq~MSt~~qtA~Leq~~P~~~~~pgegYAS~~~aaK~~DiLtKAhe~vnt~RnsDPiqyaiE~gQIdPLdF~tpe~FtAS 431 (707)
+++|||..++.||++++-+|-.- -.+|-+. .+++-+.+-.--|-.|-+-+-.-|+--|-|.-.+.|.--
T Consensus 3 lr~L~p~ErqeLL~~Lk~~YR~I-lLsYF~~----------d~~~nq~id~fVn~aFfadi~v~~ivEiHmel~deFskq 71 (106)
T d1r8ja1 3 LRNLPAYESQKLHQAMQTSYREI-VLSYFSP----------NSNLNQSIDNFVNMAFFADVPVTKVVEIHMELMDEFAKK 71 (106)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHH-HHHHTST----------TCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHH-HHHHCCC----------CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 01089999999999999999999-9999099----------578899999999999971774889999999999999999
Q ss_pred HHHHCCCHHHHHHHHCCC
Q ss_conf 975203368889871886
Q gi|254781204|r 432 LRQRAGFVKKIKDDYNLT 449 (707)
Q Consensus 432 LaqR~S~V~sLkr~YGt~ 449 (707)
|.--+-+-+-| -+|-++
T Consensus 72 LkLEGrs~e~L-lDYRLt 88 (106)
T d1r8ja1 72 LRVEGRSEDIL-LDYRLT 88 (106)
T ss_dssp HHTTTCCTTGG-GGGHHH
T ss_pred HHHCCCCHHHH-HHHHHH
T ss_conf 76546618999-999999
Done!