BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254781204|ref|YP_003065617.1| hypothetical protein
CLIBASIA_05555 [Candidatus Liberibacter asiaticus str. psy62]
         (707 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254781204|ref|YP_003065617.1| hypothetical protein CLIBASIA_05555 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040881|gb|ACT57677.1| hypothetical protein CLIBASIA_05555 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|317120670|gb|ADV02493.1| hypothetical protein SC1_gp045 [Liberibacter phage SC1]
 gi|317120814|gb|ADV02635.1| hypothetical protein SC1_gp045 [Candidatus Liberibacter asiaticus]
          Length = 707

 Score = 1462 bits (3786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 707/707 (100%), Positives = 707/707 (100%)

Query: 1   MIEITTNKPLVEAVTPNQDAVRDSVNPQAGLRDLGDALGKATQFLEGIRRDNAFATANTR 60
           MIEITTNKPLVEAVTPNQDAVRDSVNPQAGLRDLGDALGKATQFLEGIRRDNAFATANTR
Sbjct: 1   MIEITTNKPLVEAVTPNQDAVRDSVNPQAGLRDLGDALGKATQFLEGIRRDNAFATANTR 60

Query: 61  YTELSFKAVQDFHDFTNSLDTRDSLQAGDKIKEYVDGRIRSAYDRFLSSISHRDVRKKFQ 120
           YTELSFKAVQDFHDFTNSLDTRDSLQAGDKIKEYVDGRIRSAYDRFLSSISHRDVRKKFQ
Sbjct: 61  YTELSFKAVQDFHDFTNSLDTRDSLQAGDKIKEYVDGRIRSAYDRFLSSISHRDVRKKFQ 120

Query: 121 AQVEHDIRDYHTKGVDIQIGATQRAQEDNLNMTVGLAAAHVLHDPSNENYFQRVQSITDH 180
           AQVEHDIRDYHTKGVDIQIGATQRAQEDNLNMTVGLAAAHVLHDPSNENYFQRVQSITDH
Sbjct: 121 AQVEHDIRDYHTKGVDIQIGATQRAQEDNLNMTVGLAAAHVLHDPSNENYFQRVQSITDH 180

Query: 181 INSLPIDLRLKQKLLSEAKEKLNTNQIIGAHARDPRVFENFMRAFYKKGHPPKDSTSLSD 240
           INSLPIDLRLKQKLLSEAKEKLNTNQIIGAHARDPRVFENFMRAFYKKGHPPKDSTSLSD
Sbjct: 181 INSLPIDLRLKQKLLSEAKEKLNTNQIIGAHARDPRVFENFMRAFYKKGHPPKDSTSLSD 240

Query: 241 VSDSARERSLEVVEDVSKAIGLAGWDRLDDTKRRRLLEHLSSRDNALNTKLRKETQAQAR 300
           VSDSARERSLEVVEDVSKAIGLAGWDRLDDTKRRRLLEHLSSRDNALNTKLRKETQAQAR
Sbjct: 241 VSDSARERSLEVVEDVSKAIGLAGWDRLDDTKRRRLLEHLSSRDNALNTKLRKETQAQAR 300

Query: 301 RIDAQLNHGITVKPSELIPLEDYTQAYGVEQGTELYNLQQFKSVAAPDVARIKLMSTFDA 360
           RIDAQLNHGITVKPSELIPLEDYTQAYGVEQGTELYNLQQFKSVAAPDVARIKLMSTFDA
Sbjct: 301 RIDAQLNHGITVKPSELIPLEDYTQAYGVEQGTELYNLQQFKSVAAPDVARIKLMSTFDA 360

Query: 361 KKFLQKIDDEYISNPSLSLASTMMATKYKEILEKSHRQSMQELNQDAISWGIKYKQIDPL 420
           KKFLQKIDDEYISNPSLSLASTMMATKYKEILEKSHRQSMQELNQDAISWGIKYKQIDPL
Sbjct: 361 KKFLQKIDDEYISNPSLSLASTMMATKYKEILEKSHRQSMQELNQDAISWGIKYKQIDPL 420

Query: 421 RFDTEESFADSLRQRAGFVKKIKDDYNLTTSHFNKTEENQLRTQLVKRPASESVDLIRGA 480
           RFDTEESFADSLRQRAGFVKKIKDDYNLTTSHFNKTEENQLRTQLVKRPASESVDLIRGA
Sbjct: 421 RFDTEESFADSLRQRAGFVKKIKDDYNLTTSHFNKTEENQLRTQLVKRPASESVDLIRGA 480

Query: 481 YNTLSDSDKEGVRSSFAHIEDNGLSAVVRLSSEFSDDAKNAAMVILSGMKHQKDTETRYN 540
           YNTLSDSDKEGVRSSFAHIEDNGLSAVVRLSSEFSDDAKNAAMVILSGMKHQKDTETRYN
Sbjct: 481 YNTLSDSDKEGVRSSFAHIEDNGLSAVVRLSSEFSDDAKNAAMVILSGMKHQKDTETRYN 540

Query: 541 TDHKSNKFDSLYDSYINTPLTKLEQSTAGGNFNKDKEAIKLYLLGSMKDSGNYTLNRVRV 600
           TDHKSNKFDSLYDSYINTPLTKLEQSTAGGNFNKDKEAIKLYLLGSMKDSGNYTLNRVRV
Sbjct: 541 TDHKSNKFDSLYDSYINTPLTKLEQSTAGGNFNKDKEAIKLYLLGSMKDSGNYTLNRVRV 600

Query: 601 SDAMQIVLGNTPVNINESMLMPPRGMSKTDFEDRLWYATKDTGEYDPYTIKYMNVGSGKY 660
           SDAMQIVLGNTPVNINESMLMPPRGMSKTDFEDRLWYATKDTGEYDPYTIKYMNVGSGKY
Sbjct: 601 SDAMQIVLGNTPVNINESMLMPPRGMSKTDFEDRLWYATKDTGEYDPYTIKYMNVGSGKY 660

Query: 661 MIIKNGNPKVDKEGKTIIINVEDVNRDERMESTIRHYEHQIFNEHAP 707
           MIIKNGNPKVDKEGKTIIINVEDVNRDERMESTIRHYEHQIFNEHAP
Sbjct: 661 MIIKNGNPKVDKEGKTIIINVEDVNRDERMESTIRHYEHQIFNEHAP 707


>gi|315122890|ref|YP_004063379.1| hypothetical protein CKC_05730 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313496292|gb|ADR52891.1| hypothetical protein CKC_05730 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 583

 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 146/560 (26%), Positives = 255/560 (45%), Gaps = 37/560 (6%)

Query: 147 EDNLNMTVGLAAAHVLHDPSNENY-FQRVQS--ITDHINSLPIDLRLKQKLLSEAKEKLN 203
           E ++  T    A ++   P+NEN   QR +   + D     P D   K++ L +    L+
Sbjct: 6   EKHIGDTAVALALNIRLSPTNENLELQRNRGYDVIDKSLLTPEDKVKKKQALDKT---LH 62

Query: 204 TNQIIGAHARDPRVFENFMRAFYKKGHPPKDSTSLSDVSDSARERSLEVVEDVSKAIGLA 263
            +Q IG  + +P +  N     Y      KD  S   ++++A   ++E+  D  K  G  
Sbjct: 63  KSQTIGLLSNEPDIVGNLSSLVYGSPVAVKDGLSPDQIAENADGGTIEI--DEHKLDGKT 120

Query: 264 GWDRLDDTKRRRLLEHLSSRDNALNTKLRKETQAQARRI-------DAQLNHG-ITVKPS 315
           G+  +D   R    E L S  +  N K   E Q+  +R+         + N G I+    
Sbjct: 121 GYTGIDSLSR----EDLKSLLDEHNRKTNAERQSGKKRVIETIKLRTTEANKGNISSDYD 176

Query: 316 ELIPLEDYTQAYGVEQGTELYNLQQFKSVAAPDVARIKLMSTFDAKKFLQKIDDEYISNP 375
           E+    + ++ Y       +    + K   AP +  ++ M+  +  +F+  ++   +   
Sbjct: 177 EVFSESNLSRYYQPADVESIITQAKLKKDIAPYIRVVETMTNEEYAEFVSTVNSRTVD-- 234

Query: 376 SLSLASTMMATKYKEILEKSHRQSMQELNQDAISWGIKYKQIDPLRFDTEES-FADSLRQ 434
              L     A  + + L+     S++EL++D   W  + + + P     E    A S+  
Sbjct: 235 -YDLNDRFKAQAFLKELQDKRVASLKELSKDPHGWQ-RSRGLVPPNLSLEAGQLASSVLP 292

Query: 435 RAGFVKKIKDDYNLTTSHFNKTEENQLRTQLVKRPASESVDLIRGAYNT--LSDSDKEGV 492
                +K + D+ +        +E QL  ++    A + V   R       ++ SD E +
Sbjct: 293 IFDANEKTEKDHGVIVKGMGTDKERQLSEKIKGERAEDFVSYFRDEMTKEGVTKSDIEKI 352

Query: 493 RSSFAHIEDNGLSAVVRLSSEFSDDAKNAAMVILSGMKHQKDTETRYNTDHKSNKFDSLY 552
           +S    ++D   S++ RL+   S +A+ +A+ ++SG+KH+ D E +  +  K N    L+
Sbjct: 353 KSVVDGMKDKVTSSICRLAMSDSAEARASAIPVISGVKHRGDIELKLESS-KGNGVKKLF 411

Query: 553 DSYINTPLTKLEQSTAGGNFNKDKEAIKLYLLGSMKDSGNYTLNRVRVSDAMQIVLGNTP 612
           ++ IN  + +L Q +   N+ +D E IKLY++G+M  +GNYTLN   V DA++ V GNT 
Sbjct: 412 NNLINKEIGQLYQGSEDANYKQDAEVIKLYIMGNMHKTGNYTLNGEVVRDAVKAVFGNTA 471

Query: 613 VNINESMLMPPRGMSKTDFEDRLWYATKD--TGEYD-------PYTIKYMNVGSGKYMII 663
             +N S +MPPRGMS  +F +RL   T D   G +        P +  Y + G GKY + 
Sbjct: 472 YAVNGSYVMPPRGMSHYEFGNRLHGLTSDKLVGLFGDKSKDRYPESYGYQSEGDGKYSLT 531

Query: 664 KNGNPKVDKEGKTIIINVED 683
             G  K DK+G  I+IN+ D
Sbjct: 532 VGGVYKKDKQGNPIVINIYD 551


>gi|315121928|ref|YP_004062417.1| hypothetical protein CKC_00890 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495330|gb|ADR51929.1| hypothetical protein CKC_00890 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 547

 Score =  144 bits (364), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 141/550 (25%), Positives = 246/550 (44%), Gaps = 35/550 (6%)

Query: 147 EDNLNMTVGLAAAHVLHDPSNENY-FQRVQS--ITDHINSLPIDLRLKQKLLSEAKEKLN 203
           E ++  T    A ++   P+NEN   QR +   + D     P D   K++ L +    L+
Sbjct: 6   EKHIGDTAVALALNIRLSPTNENLELQRNRGYDVIDKSLLTPEDKVKKKQALDKT---LH 62

Query: 204 TNQIIGAHARDPRVFENFMRAFYKKGHPPKDSTSLSDVSDSARERSLEVVEDVSKAIGLA 263
            +Q IG  + +P +  N     Y      KD  S   ++++A   ++E+  D  K  G  
Sbjct: 63  KSQTIGLLSNEPDIVGNLSSLVYGSPVAVKDGLSPDQIAENADGGTIEI--DEHKLDGKT 120

Query: 264 GWDRLDDTKRRRLLEHLSSRDNALNTKLRKETQAQARRI-------DAQLNHG-ITVKPS 315
           G+  +D   R    E L S  +  N K   E Q+  +R+         + N G I+    
Sbjct: 121 GYTGIDSLSR----EDLKSLLDEHNRKTNAERQSGKKRVIETIKLRTTEANKGNISSDYD 176

Query: 316 ELIPLEDYTQAYGVEQGTELYNLQQFKSVAAPDVARIKLMSTFDAKKFLQKIDDEYISNP 375
           E+    + ++ Y       +    + K   AP +  ++ M+  +  +F+  ++   +   
Sbjct: 177 EVFSESNLSRYYQPADVESIITQAKLKKDIAPYIRVVETMTNEEYAEFVSTVNSRTVD-- 234

Query: 376 SLSLASTMMATKYKEILEKSHRQSMQELNQDAISWGIKYKQIDPLRFDTEESFADSLRQR 435
              L     A  + + L+     S++EL++D   W      + P         A S+   
Sbjct: 235 -YDLNDRFKAQAFLKELQDKRVASLKELSKDPHGWQRSRGLVPPNLSLEAGQLASSVLPI 293

Query: 436 AGFVKKIKDDYNLTTSHFNKTEENQLRTQLVKRPASESVDLIRGAYNT--LSDSDKEGVR 493
               +K + D+ +        +E QL  ++    A + V   R       ++ SD E ++
Sbjct: 294 FDANEKTEKDHGVIVKGMGTDKERQLSEKIKGERAEDFVSYFRDEMTKEGVTKSDIEKIK 353

Query: 494 SSFAHIEDNGLSAVVRLSSEFSDDAKNAAMVILSGMKHQKDTETRYNTDHKSNKFDSLYD 553
           S    ++D   S++ RL+   S +A+ +A+ ++SG+KH+ D E +  +  K N    L++
Sbjct: 354 SVVDGMKDKVTSSICRLAMSDSAEARASAIPVISGVKHRGDIELKLESS-KGNGVKKLFN 412

Query: 554 SYINTPLTKLEQSTAGGNFNKDKEAIKLYLLGSMKDSGNYTLNRVRVSDAMQIVLGNTPV 613
           + IN  + +L Q +   N+ +D E IKLY++G+M  +GNYTLN   V DA++ V GNT  
Sbjct: 413 NLINKEIGQLYQGSEDANYKQDAEVIKLYIMGNMHKTGNYTLNGEVVRDAVKAVFGNTAY 472

Query: 614 NINESMLMPPRGMSKTDFEDRLWYATKD--TGEYD-------PYTIKYMNVGSGKYMIIK 664
            +N S +MPPRGMS  +F +RL   T D   G +        P +  Y + G GKY +  
Sbjct: 473 AVNGSYVMPPRGMSHYEFGNRLHGLTSDKLVGLFGDKSKDRYPESYGYQSEGDGKYSLTV 532

Query: 665 NGNPKVDKEG 674
            G  K DK+G
Sbjct: 533 GGVYKKDKQG 542


>gi|317120711|gb|ADV02533.1| hypothetical protein SC2_gp045 [Liberibacter phage SC2]
 gi|317120772|gb|ADV02593.1| hypothetical protein SC2_gp045 [Candidatus Liberibacter asiaticus]
          Length = 753

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 139/711 (19%), Positives = 284/711 (39%), Gaps = 64/711 (9%)

Query: 16  PNQDAVRDSVNPQAGLRDLGDALGKATQFL-EGIRRDNAFATANTRYTELSFKAVQDFHD 74
           P ++ V+   +P  GLRD+ + L ++T+ + E +RR +AF  A++ + + + +A + F++
Sbjct: 16  PVKEHVQQRYSPDEGLRDIANKLNQSTKLIEETVRRQSAFK-ADSEFLQTTVEAEKVFNE 74

Query: 75  FTNSLDTRDSLQAGDKIKEYVDGRIRSAYDRFLSSISHRDVRKKFQAQVEHDIRDYHTKG 134
               L   +  +    ++  +   I+  Y +    + + +VR+    Q    +  +  K 
Sbjct: 75  KLQGLQGGNEEEVKKNLESILSNDIKPLYGKMHEKLDYPEVRRHILQQSNKQMARFQLKA 134

Query: 135 VDIQIGATQRAQEDNLNMTVGLAAAHVLHDPSNENYFQRVQSITDHINSLPIDLRLKQKL 194
            + ++G   +  E+ +       +  +L D S+ NY ++VQ  +D I+ LP++   K   
Sbjct: 135 NEYKLGFQVQRTEEGIREIERSVSNSLLLDGSDSNYREKVQFASDAIDKLPLNPTTKDAR 194

Query: 195 LSEAKEKLNTNQIIGAHARDPRVFENFMRAFYKKGHPPKDSTSLSDVSDSARERSLEVVE 254
               +E     Q       +P+VF +F++    +G    D ++++D+ D+    +  V +
Sbjct: 195 RRTTRENAALAQAQRYMVDNPQVFSSFIQKREGQGSKIDDKSTIADIVDNTPLDTFSVND 254

Query: 255 DVSKAIG-LAGWDRLDDTKRRRLLEHLSSRDNALNTKLRKETQAQARRIDAQLNHGITVK 313
            V        GW  L   K+  +L+ +++       + R     + + I + L  GIT K
Sbjct: 255 TVVDNTNPFEGWKDLSTQKKIAILKEVANASTTGKQEERSRVGTKIKNIASFLERGITPK 314

Query: 314 PSELIPL--EDYTQAYGVEQG----TELYNLQQFKSVAAPDVARIKLMSTFDAKKFLQKI 367
             +   L  ++    +G  +G    ++L  L++F    AP + +I LM     +  L K+
Sbjct: 315 NIQDADLSEDNLRHLFGNTRGQMLSSQLQTLKEF----APKINQIFLMPNDQVETELTKL 370

Query: 368 DDEYISNPSLSLASTMMATKYKEILEKSHRQSMQELNQDAISWGIKYKQIDPLRFDTEES 427
             +  +       + + +   K + +       +E  +  I W I +     +  D    
Sbjct: 371 KPDVQNLVGAEFKNKLYSDGVKAVYKND-----KERKEHPIKWAITHGLTQEMP-DEPSK 424

Query: 428 FADSLRQRAGFVKKIKDDYNLTTSHFNKTEENQLRTQLVKRPASESVDLIRGAYNTLSDS 487
           + D    R    + +K  Y +++   +K E  +L   L K  + + V  +      L   
Sbjct: 425 WGDFFVHRREVSQTLKGFYGVSSPLISKEESRKLTQYLDKLESKDVVSHLEDYAERLGGL 484

Query: 488 DKEGVRSSFAHIEDNGLSAVVRLSSEFSDDAKNAAMVILSGMKHQKDTETRYNTDHKSNK 547
                  +   +E   +  V  L     DD  + A  +L G K++         D    +
Sbjct: 485 KNSVWIEAMQSLEHPVMGEVGLL---LKDDP-DVASDVLRGYKYRVRNRGENIRDITGER 540

Query: 548 FDSLYDSYINTPLTKLEQST---AGGNFNKDKEAIKLYLLGSMKDSGNYTLNRV------ 598
           FD+ +          +  S        F++  + +  +L G +     Y+ +        
Sbjct: 541 FDAWFKERFREKYGNVFASIGDYGDAEFDRASKLVGYHLAGELLSDKTYSFHEAPTQSLK 600

Query: 599 -------------RVSDAMQIVLGNTPVNINE--SMLMPPRGMSKTDFEDRLWYATKDTG 643
                         +  + + V+GN PV + +  S L+PPRGMS  DF ++     +   
Sbjct: 601 EWVLRQPASQYDKNLQHSFEAVVGNIPVPMGDFKSPLIPPRGMSSEDFTNKFTAVAQQVF 660

Query: 644 EYDPYTIK---YMNV-----GSGKYMIIKNG-----NPKVDKEGKTIIINV 681
           E    + K   Y N+     GS +Y+ +K G     NPK    G  ++I V
Sbjct: 661 EESGLSGKEYGYENIGPTSDGSAQYL-VKFGREYIHNPKT---GAPLVIEV 707


>gi|85059171|ref|YP_454873.1| hypothetical protein SG1193 [Sodalis glossinidius str. 'morsitans']
 gi|84779691|dbj|BAE74468.1| hypothetical phage protein [Sodalis glossinidius str. 'morsitans']
          Length = 843

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 84/400 (21%), Positives = 156/400 (39%), Gaps = 57/400 (14%)

Query: 321 EDYTQAYGVEQGTELY----NLQQFKSVAAPDVARIKLMSTFDAKKFLQKIDDEYISNPS 376
           +++T+AYG + G + Y    + QQ  S    D++ ++ +S    +  L   +      P 
Sbjct: 450 DEFTRAYGYDAGQKAYANYLDTQQLGS----DISTVQQLSPVGQQALLNAREPV----PG 501

Query: 377 LSLASTMMATKYKEILEKSHRQSMQELNQDAISWGIKYKQIDPLRFDTEESFADSLRQRA 436
              A    A K  E L+K+     +   QD + +  + KQI PL   T E+F   L  R 
Sbjct: 502 EGYAE---AAKRHETLQKAVEYVNRARMQDPVQYAAEQKQIAPLDMQTPEAFRAGLSSRG 558

Query: 437 GFVKKIKDDYNLTTSHFNKTEENQLRTQLVKRPASESVDLIRGAYNTLSDSDKEGVRSSF 496
               ++   Y    + F+++E +Q+   L   PAS+S+  +    + L      GV+ S 
Sbjct: 559 SLAPELARHYGTPLAIFSQSEASQIGEMLRSAPASQSIAYL----DALRQGLGAGVQYSA 614

Query: 497 A--HIEDNGLSAVVR-----------------LSSEFSDDAKNAAMVILSGMKHQKDTET 537
           A   +     SA V                  LS++      +AA  I+ G   +    T
Sbjct: 615 ALQQVSRYAPSAAVAGAIMGKRGNVIGNEGGWLSADLMVTPDDAAKTIIEGANARAGVTT 674

Query: 538 RYN-TDHKSNKFDSLYDSYINTPLTKLEQSTAGGNFNKDKEA-------IKLYLLGSMKD 589
             N  ++K+   +   D+ +            G  F  D E         K Y  G M  
Sbjct: 675 NVNGVENKTRGIEMPKDTDLRPEFV----DKVGKAFAGDAEGAAQAYDVAKDYYAGVMAR 730

Query: 590 SGNYT--LNRVRVSDAMQIVLGNTPVNINESMLMPPRGMSKTDFEDRLWYATK-----DT 642
            GN +   ++   + A+ +  G       +  ++ P GMS++ F   +  A K     D 
Sbjct: 731 KGNVSGEYDKDTWTQAINVATGGVYDYGGQGDVLLPWGMSESQFNKAVGVAWKKQVLDDG 790

Query: 643 GEYDPYTIKYMNVGSGKYMIIKNGNPKVDKEGKTIIINVE 682
            +  P      + G  +Y++   G   + K+G+ ++++++
Sbjct: 791 IKPPPGRYGLQSHGDSQYLVKLGGGYLLGKDGRPVVLHID 830


>gi|218700979|ref|YP_002408608.1| hypothetical protein ECIAI39_2669 [Escherichia coli IAI39]
 gi|218370965|emb|CAR18792.1| conserved hypothetical protein from phage origin [Escherichia coli
           IAI39]
          Length = 837

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 62/302 (20%), Positives = 118/302 (39%), Gaps = 44/302 (14%)

Query: 261 GLAGWDRLDDTKRRRLLEH---LSSRDNA-----LNTKLRKETQAQARRIDAQLNHGITV 312
           G+A +D L ++ +  +L     L+ +  A     L++++R  T A  R I+         
Sbjct: 393 GIAWFDALSESDQASVLRQTDALARQQQAEYKTMLDSRVRDATAAYMRGIE------FPN 446

Query: 313 KPSELIPLEDYTQAYGVEQGTELYNLQQFKSVAAPDVARIKLMSTFDAKKFLQKIDDEYI 372
            P E    +D+  AYGV +G   Y   +   +A   +   + M T     +++++  +  
Sbjct: 447 PPGE----DDFIAAYGVREGNLRYTEFKNTQIAGQYIGSFRNMPTSSITAYVEQLRPD-- 500

Query: 373 SNPSLSLASTMMATKYKEILEKSHRQSMQELNQDAISWGIKYKQIDPLRFDTEESFADSL 432
                       AT Y  ++  ++ Q +++   D + + +   Q  P+    +++F  S+
Sbjct: 501 -TGDTGEGYAARATLYDNVVSAAN-QVIKQRQSDPVQFSLASGQAKPIDMSNKDNFGQSV 558

Query: 433 RQRAGFVKKIKDDYNLTTSHFNKTEENQLRTQLVKRPASESVDLIRGAYNTLSDSDKEG- 491
             RA  V  +   Y    + F+K E NQ+       P S+    +    +T+  S   G 
Sbjct: 559 ALRAAQVSDLAKSYGTPLTFFSKDEANQIGVFFRDAPVSQQAAYL----DTIRQSTGGGQ 614

Query: 492 -VRSSFAHIEDNGLSAVVR----------------LSSEFSDDAKNAAMVILSGMKHQKD 534
              S+   I  N  SA V                  + + S   + AA  IL+G   +K 
Sbjct: 615 VYMSALQQISANAPSAAVAGILMDKPGGILAEKNWFNPDVSVSPETAAQTILAGAAARKG 674

Query: 535 TE 536
           T+
Sbjct: 675 TD 676


>gi|323948674|gb|EGB44579.1| hypothetical protein ERKG_04897 [Escherichia coli H252]
          Length = 837

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 62/302 (20%), Positives = 118/302 (39%), Gaps = 44/302 (14%)

Query: 261 GLAGWDRLDDTKRRRLLEH---LSSRDNA-----LNTKLRKETQAQARRIDAQLNHGITV 312
           G+A +D L ++ +  +L     L+ +  A     L++++R  T A  R I+         
Sbjct: 393 GVAWFDALSESDQASVLRQTDALARQQQAEYKTMLDSRVRDATAAYMRGIE------FPN 446

Query: 313 KPSELIPLEDYTQAYGVEQGTELYNLQQFKSVAAPDVARIKLMSTFDAKKFLQKIDDEYI 372
            P E    +D+  AYGV +G   Y   +   +A   +   + M T     +++++  +  
Sbjct: 447 PPGE----DDFIAAYGVREGNLRYTEFKNTQIAGQYIGSFRNMPTSSITAYVEQLRPD-- 500

Query: 373 SNPSLSLASTMMATKYKEILEKSHRQSMQELNQDAISWGIKYKQIDPLRFDTEESFADSL 432
                       AT Y  ++  ++ Q +++   D + + +   Q  P+    +++F  S+
Sbjct: 501 -TGDTGEGYAARATLYDNVVSAAN-QVIKQRQSDPVQFSLASGQAKPIDMSNKDNFGQSV 558

Query: 433 RQRAGFVKKIKDDYNLTTSHFNKTEENQLRTQLVKRPASESVDLIRGAYNTLSDSDKEG- 491
             RA  V  +   Y    + F+K E NQ+       P S+    +    +T+  S   G 
Sbjct: 559 ALRAAQVSDLAKSYGTPLTFFSKDEANQIGVFFRDAPVSQQAAYL----DTIRQSTGGGQ 614

Query: 492 -VRSSFAHIEDNGLSAVVR----------------LSSEFSDDAKNAAMVILSGMKHQKD 534
              S+   I  N  SA V                  + + S   + AA  IL+G   +K 
Sbjct: 615 VYMSALQQISANAPSAAVAGILMDKPGGILAEKNWFNPDVSVSPETAAQTILAGAAARKG 674

Query: 535 TE 536
           T+
Sbjct: 675 TD 676


>gi|117624701|ref|YP_853614.1| hypothetical protein APECO1_4052 [Escherichia coli APEC O1]
 gi|115513825|gb|ABJ01900.1| conserved hypothetical protein [Escherichia coli APEC O1]
          Length = 837

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 62/302 (20%), Positives = 118/302 (39%), Gaps = 44/302 (14%)

Query: 261 GLAGWDRLDDTKRRRLLEH---LSSRDNA-----LNTKLRKETQAQARRIDAQLNHGITV 312
           G+A +D L ++ +  +L     L+ +  A     L++++R  T A  R I+         
Sbjct: 393 GVAWFDALSESDQASVLRQTDALARQQQAEYKTMLDSRVRDATAAYMRGIE------FPN 446

Query: 313 KPSELIPLEDYTQAYGVEQGTELYNLQQFKSVAAPDVARIKLMSTFDAKKFLQKIDDEYI 372
            P E    +D+  AYGV +G   Y   +   +A   +   + M T     +++++  +  
Sbjct: 447 PPGE----DDFIAAYGVREGNLRYTEFKNTQIAGQYIGSFRNMPTSSITAYVEQLRPD-- 500

Query: 373 SNPSLSLASTMMATKYKEILEKSHRQSMQELNQDAISWGIKYKQIDPLRFDTEESFADSL 432
                       AT Y  ++  ++ Q +++   D + + +   Q  P+    +++F  S+
Sbjct: 501 -TGDTGEGYAARATLYDNVVSAAN-QVIKQRQSDPVQFSLASGQAKPIDMSNKDNFGQSV 558

Query: 433 RQRAGFVKKIKDDYNLTTSHFNKTEENQLRTQLVKRPASESVDLIRGAYNTLSDSDKEG- 491
             RA  V  +   Y    + F+K E NQ+       P S+    +    +T+  S   G 
Sbjct: 559 ALRAAQVSDLAKSYGTPLTFFSKDEANQIGVFFRDAPVSQQAAYL----DTIRQSTGGGQ 614

Query: 492 -VRSSFAHIEDNGLSAVVR----------------LSSEFSDDAKNAAMVILSGMKHQKD 534
              S+   I  N  SA V                  + + S   + AA  IL+G   +K 
Sbjct: 615 VYMSALQQISANAPSAAVAGILMDKPGGILAEKNWFNPDVSVSPETAAQTILAGAAARKG 674

Query: 535 TE 536
           T+
Sbjct: 675 TD 676


>gi|324008549|gb|EGB77768.1| hypothetical protein HMPREF9532_01736 [Escherichia coli MS 57-2]
          Length = 837

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 60/302 (19%), Positives = 117/302 (38%), Gaps = 44/302 (14%)

Query: 261 GLAGWDRLDDTKRRRLLEH---LSSRDNA-----LNTKLRKETQAQARRIDAQLNHGITV 312
           G+A +D L ++ +  +L     L+ +  A     L++++R  T A  R ++         
Sbjct: 393 GVAWFDALSESDQASVLRQTDALARQQQAEYKTMLDSRVRDATAAYMRGVE------FPN 446

Query: 313 KPSELIPLEDYTQAYGVEQGTELYNLQQFKSVAAPDVARIKLMSTFDAKKFLQKIDDEYI 372
            P E    +D+  AYGV +G   Y   +   +A   +   + M T     +++++  +  
Sbjct: 447 PPGE----DDFIAAYGVREGNLRYTEFKNTQIAGQYIGSFRNMPTSSITAYVEQLRPD-- 500

Query: 373 SNPSLSLASTMMATKYKEILEKSHRQSMQELNQDAISWGIKYKQIDPLRFDTEESFADSL 432
                       A  Y  ++  ++ Q +++   D + + +   Q  P+    +++F  S+
Sbjct: 501 -TGETGEGYAARAALYDNVVSAAN-QVIKQRQSDPVQFSLASGQAKPIDMSNKDNFGQSV 558

Query: 433 RQRAGFVKKIKDDYNLTTSHFNKTEENQLRTQLVKRPASESVDLIRGAYNTLSDSDKEG- 491
             RA  V  +   Y    + F+K E NQ+       P S+    +    +T+  S   G 
Sbjct: 559 ALRAAQVSDLAKSYGTPLTFFSKDEANQIGVFFRDAPVSQQAAYL----DTIRQSTGGGQ 614

Query: 492 -VRSSFAHIEDNGLSAVVR----------------LSSEFSDDAKNAAMVILSGMKHQKD 534
              S+   I  N  SA V                  + + S   + AA  IL+G   +K 
Sbjct: 615 VYMSALQQISANAPSAAVAGILMDKPGGILAEKNWFNPDVSVSPETAAQTILAGAAARKG 674

Query: 535 TE 536
           T+
Sbjct: 675 TD 676


>gi|300898438|ref|ZP_07116779.1| conserved hypothetical protein [Escherichia coli MS 198-1]
 gi|300357905|gb|EFJ73775.1| conserved hypothetical protein [Escherichia coli MS 198-1]
          Length = 837

 Score = 43.1 bits (100), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 60/302 (19%), Positives = 117/302 (38%), Gaps = 44/302 (14%)

Query: 261 GLAGWDRLDDTKRRRLLEH---LSSRDNA-----LNTKLRKETQAQARRIDAQLNHGITV 312
           G+A +D L ++ +  +L     L+ +  A     L++++R  T A  R ++         
Sbjct: 393 GVAWFDALSESDQASVLRQTDALARQQQAEYKTMLDSRVRDATAAYMRGVE------FPN 446

Query: 313 KPSELIPLEDYTQAYGVEQGTELYNLQQFKSVAAPDVARIKLMSTFDAKKFLQKIDDEYI 372
            P E    +D+  AYGV +G   Y   +   +A   +   + M T     +++++  +  
Sbjct: 447 PPGE----DDFIAAYGVREGNLRYTEFKNTQIAGQYIGSFRNMPTSSITAYVEQLRPD-- 500

Query: 373 SNPSLSLASTMMATKYKEILEKSHRQSMQELNQDAISWGIKYKQIDPLRFDTEESFADSL 432
                       A  Y  ++  ++ Q +++   D + + +   Q  P+    +++F  S+
Sbjct: 501 -TGDTGEGYAARAALYDNVVSAAN-QVIKQRQSDPVQFSLASGQAKPIDMSNKDNFGQSV 558

Query: 433 RQRAGFVKKIKDDYNLTTSHFNKTEENQLRTQLVKRPASESVDLIRGAYNTLSDSDKEG- 491
             RA  V  +   Y    + F+K E NQ+       P S+    +    +T+  S   G 
Sbjct: 559 ALRAAQVSDLAKSYGTPLTFFSKDEANQIGVFFRDAPVSQQAAYL----DTIRQSTGGGQ 614

Query: 492 -VRSSFAHIEDNGLSAVVR----------------LSSEFSDDAKNAAMVILSGMKHQKD 534
              S+   I  N  SA V                  + + S   + AA  IL+G   +K 
Sbjct: 615 VYMSALQQISANAPSAAVAGILMDKPGGILAEKNWFNPDVSVSPETAAQTILAGAAARKG 674

Query: 535 TE 536
           T+
Sbjct: 675 TD 676


>gi|330007166|ref|ZP_08305908.1| hypothetical protein HMPREF9538_03597 [Klebsiella sp. MS 92-3]
 gi|328535513|gb|EGF61973.1| hypothetical protein HMPREF9538_03597 [Klebsiella sp. MS 92-3]
          Length = 838

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 120/568 (21%), Positives = 222/568 (39%), Gaps = 92/568 (16%)

Query: 190 LKQKLLSEAKEKLNT-NQIIG--AHARDPRVFENFMRAFYKKGH-PPKDSTSLSDVSDSA 245
           L + LLS  ++  +T ++I+   A A D    E ++ A  KK +  P D  ++SD+ ++ 
Sbjct: 288 LGKNLLSYQRQGYDTVSEIVNRWAPASDGNNTEAYIAALCKKLNVTPNDQLNMSDI-NTL 346

Query: 246 RERSLEVVE---------------DVSKAIGLAGWDRLDDTKRRRLLEHLSSRDNALNTK 290
           R+    +++                VS A+GL   +        +  +  S +  A   +
Sbjct: 347 RQLCAGIIQHENGKQPYSEDQLNTGVSAALGLTTLESPKRYSGNQAFDAASPQQQAAYLR 406

Query: 291 LRKETQAQAR-RIDAQLN-----------HGITV--KPSELIPLEDYTQAYGVEQGTELY 336
              E + QAR +  AQL             GI     PS+     D+  A+G  +GT+ +
Sbjct: 407 QSMELRNQARTQFKAQLVDQVQDATAAYLKGIQFDNPPSQ----GDFINAFGYREGTQRF 462

Query: 337 NLQQFKSVAAPDVARIKLMSTFDAKKFLQKIDDEYISNPSLSLASTMMATKYKEILEKSH 396
           N  +   VA   +   + M T   ++++  + ++  +   L+      A  +  +   + 
Sbjct: 463 NDFENLRVAGQYIGSFRTMPTASIQQYVSDLKNQVGNGEGLA----GRAAAFDHVQAAAQ 518

Query: 397 R---QSMQELNQDAISWGIKYKQIDPLRFDTEESFADSLRQRAGFVKKIKDDYNLTTSHF 453
           R   Q   +  Q A+  G  YK   P+   T ++ A  ++ R     ++K    +T    
Sbjct: 519 RIISQRQSDPFQSAVDIG-AYK---PISNSTPDAIASEVKNRYAAQDQLKA-IGITPPLL 573

Query: 454 NKTEENQLRTQLVKRP--ASESVDLIRGAYNTLSDSDKEGVRSSFAHIEDNGLSAVVRLS 511
           +K +E+Q+ T  V+     ++++ L++G   TL       V SS A        A + L 
Sbjct: 574 SK-QESQVLTDAVRNSTDVNQAISLLQGLGRTLPPQALRSVASSIAPGSPGTAYAALLLG 632

Query: 512 ---------------SEFSD-----DAKNAAMVILSG------MKHQKDTETRYNTDHKS 545
                          S+F       D  + A  +L+G       K  KD      +    
Sbjct: 633 QQDNQYDNRSGIIPYSQFVSYKPTLDKYDVAKTVLAGDQMLNPTKAMKDAGISAVSIPSD 692

Query: 546 NKFDSLYDSYINTPLTKLEQS--TAGGNFNKDKEAIKLYLLGSMKDSGNYTLNRVRVSDA 603
            K  + +D  +        Q+   A GNF     A+  Y  G    +   + +      A
Sbjct: 693 EKLKTYFDKEVGNAFAYSAQARQVAWGNFRSAYAALA-YQSGDASKTNTVSPDSDIAEKA 751

Query: 604 MQIVLGNTPVNINESMLMPPRGMSKTDFEDRLWYATKDT---GEYDPYTI---KYMNVGS 657
            Q   G     +N S ++ P GM KT F DR   A ++       +P ++   K +NVG+
Sbjct: 752 AQYATGGVYKGLNGSDVVMPFGMDKTTFRDRYTAAGREAMTQAGLNPSSLENFKAVNVGN 811

Query: 658 GKYMIIKNGNPKVDKEGKT---IIINVE 682
            +Y ++ NG+ +   + +T   + + VE
Sbjct: 812 NQYRLV-NGSGRWATDPRTNQPVTVRVE 838


>gi|320175034|gb|EFW50147.1| putative bacteriophage protein [Shigella dysenteriae CDC 74-1112]
          Length = 837

 Score = 42.0 bits (97), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 54/275 (19%), Positives = 105/275 (38%), Gaps = 50/275 (18%)

Query: 287 LNTKLRKETQAQARRIDAQLNHGITVKPSELIPLEDYTQAYGVEQGTELYNLQQFKSVAA 346
           +++K+R  T A  R ++          P E    +D+  AYGV +G   Y   +   +A 
Sbjct: 427 IDSKVRDATAAYMRGVE------FPNPPGE----DDFIAAYGVREGNLRYTEFRNTQIAG 476

Query: 347 PDVARIKLMSTFDAKKFLQKI-------DDEYISNPSLSLASTMMATKYKEILEKSHRQS 399
             +   + M T     +++++        + Y S  +L          Y  ++  ++ Q 
Sbjct: 477 QYIGSFRNMPTSSITAYVEQLRPDTGETGEGYASRAAL----------YDNVVSAAN-QV 525

Query: 400 MQELNQDAISWGIKYKQIDPLRFDTEESFADSLRQRAGFVKKIKDDYNLTTSHFNKTEEN 459
           +++   D + + +   Q  P+    +++F  S+  RA  +  +   Y    + F+K E N
Sbjct: 526 IKQRQSDPVQFSLASGQAKPIDMSNKDNFGQSVALRAAQISDLAKSYGTPLTFFSKDEAN 585

Query: 460 QLRTQLVKRPASESVDLIRGAYNTLSDSDKEG--VRSSFAHIEDNGLSAVVR-------- 509
           Q+       P S+    +    +T+  S   G    S+   I  N  SA V         
Sbjct: 586 QIGVFFRDAPVSQQAAYL----DTIRQSTGGGQVYMSALQQISANAPSAAVAGILMDKPG 641

Query: 510 --------LSSEFSDDAKNAAMVILSGMKHQKDTE 536
                    + + S   + AA  IL+G   +K T+
Sbjct: 642 GILAETNWFNPDVSVSPETAAQTILAGAAARKGTD 676


>gi|331648165|ref|ZP_08349255.1| hypothetical protein ECIG_04091 [Escherichia coli M605]
 gi|331043025|gb|EGI15165.1| hypothetical protein ECIG_04091 [Escherichia coli M605]
          Length = 837

 Score = 42.0 bits (97), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 55/275 (20%), Positives = 105/275 (38%), Gaps = 40/275 (14%)

Query: 290 KLRKETQAQARR-IDAQLNHGITV---------KPSELIPLEDYTQAYGVEQGTELYNLQ 339
           +LR++ QA+ +  ID+Q+                P E    +D+  AYGV +G   Y   
Sbjct: 414 QLRRQQQAEYKTMIDSQVRDATAAYMRGVEFPNPPGE----DDFIAAYGVREGNLRYTEF 469

Query: 340 QFKSVAAPDVARIKLMSTFDAKKFLQKIDDEYISNPSLSLASTMMATKYKEILEKSHRQS 399
           +   +A   +   + M T     +++++  +              A  Y  ++  ++ Q 
Sbjct: 470 RNTQIAGQYIGSFRNMPTSSITAYVEQLRPD---TGETGEGYAARAALYDNVVSAAN-QV 525

Query: 400 MQELNQDAISWGIKYKQIDPLRFDTEESFADSLRQRAGFVKKIKDDYNLTTSHFNKTEEN 459
           +++   D + + +   Q  P+    +++F  S+  RA  V  +   Y    + F+K E N
Sbjct: 526 IKQRQSDPVQFSLASGQAKPIDMSNKDNFGQSVALRAAQVSDLAKSYGTPLTFFSKDEAN 585

Query: 460 QLRTQLVKRPASESVDLIRGAYNTLSDSDKEG--VRSSFAHIEDNGLSAVVR-------- 509
           Q+       P S+    +    +T+  S   G    S+   I  N  SA V         
Sbjct: 586 QIGVFFRDAPVSQQAAYL----DTIRQSTGGGQVYMSALQQISANAPSAAVAGILMDKPG 641

Query: 510 --------LSSEFSDDAKNAAMVILSGMKHQKDTE 536
                    + + S   + AA  IL+G   +K T+
Sbjct: 642 GILAEKNWFNPDVSVSPETAAQTILAGAAARKGTD 676


>gi|315121929|ref|YP_004062418.1| hypothetical protein CKC_00895 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
 gi|315122891|ref|YP_004063380.1| hypothetical protein CKC_05735 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
 gi|313495331|gb|ADR51930.1| hypothetical protein CKC_00895 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
 gi|313496293|gb|ADR52892.1| hypothetical protein CKC_05735 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
          Length = 129

 Score = 41.6 bits (96), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 41/87 (47%)

Query: 1  MIEITTNKPLVEAVTPNQDAVRDSVNPQAGLRDLGDALGKATQFLEGIRRDNAFATANTR 60
          M  +   +   E + PNQDAVRD+V+P  GL+ +   L    Q  +  R ++  A A T+
Sbjct: 1  MANLDLKQTASEPLAPNQDAVRDAVDPLGGLKTVAQGLDSLNQLYQERRSEHIKAQALTQ 60

Query: 61 YTELSFKAVQDFHDFTNSLDTRDSLQA 87
              S     DF  +  SL T   +QA
Sbjct: 61 DALHSADDHADFARYMTSLPTGVDVQA 87


>gi|332344343|gb|AEE57677.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 837

 Score = 40.8 bits (94), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 55/275 (20%), Positives = 103/275 (37%), Gaps = 40/275 (14%)

Query: 290 KLRKETQAQARR-IDAQLNHGITV---------KPSELIPLEDYTQAYGVEQGTELYNLQ 339
           +LR++ QA+ +  ID+Q+                P E     D+  AYGV +G   Y   
Sbjct: 414 QLRRQQQAEYKTMIDSQVRDATAAYMRGVEFPNPPGE----ADFIAAYGVREGNLRYTEF 469

Query: 340 QFKSVAAPDVARIKLMSTFDAKKFLQKIDDEYISNPSLSLASTMMATKYKEILEKSHRQS 399
           +   +A   +   + M T     +++++  +              A  Y  ++  +  Q 
Sbjct: 470 RNTQIAGQYIGSFRNMPTSSITAYVEQLRPD---TGETGEGYAARAALYDNVVSAAS-QV 525

Query: 400 MQELNQDAISWGIKYKQIDPLRFDTEESFADSLRQRAGFVKKIKDDYNLTTSHFNKTEEN 459
           +++   D + + +   Q  P+    +++F  S+  RA  V  +   Y    + F+K E N
Sbjct: 526 IKQRQADPVQFSLAAGQAKPIDMSNKDNFGQSVALRAAQVSDLAKSYGTPLTFFSKDEAN 585

Query: 460 QLRTQLVKRPASESVDLIRGAYNTLSDSDKEG--VRSSFAHIEDNGLSAVVR-------- 509
           Q+       P S+    +    +T+  S   G    S+   I  N  SA V         
Sbjct: 586 QIGVFFRDAPVSQQAAYL----DTIRQSTGGGQVYMSALQQISANAPSAAVAGILMDKPG 641

Query: 510 --------LSSEFSDDAKNAAMVILSGMKHQKDTE 536
                    + + S   + AA  IL+G   +K T+
Sbjct: 642 GILAEKNWFNPDVSVSPETAAQTILAGAAARKGTD 676


>gi|327252173|gb|EGE63845.1| prophage MuMc02, structural protein P5 [Escherichia coli STEC_7v]
          Length = 837

 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 58/279 (20%), Positives = 105/279 (37%), Gaps = 48/279 (17%)

Query: 290 KLRKETQAQARR-IDAQLNHGITV---------KPSELIPLEDYTQAYGVEQG----TEL 335
           +LR++ QA+ +  ID+Q+                P E     D+  AYGV +G    TE 
Sbjct: 414 QLRRQQQAEYKTMIDSQVRDATAAYMRGVEFPNPPGE----ADFIAAYGVREGKLRYTEF 469

Query: 336 YNLQQFKSVAAPDVARIKLMSTFDAKKFLQKIDDEYISNPSLSLASTMMATKYKEILEKS 395
            N Q    +A   +   + M T     +++++  +              A  Y  ++  +
Sbjct: 470 RNTQ----IAGQYIGSFRNMPTSSITAYVEQLRPD---TGETGEGYAARAALYDNVVSAA 522

Query: 396 HRQSMQELNQDAISWGIKYKQIDPLRFDTEESFADSLRQRAGFVKKIKDDYNLTTSHFNK 455
             Q +++   D + + +   Q  P+    +++F  S+  RA  V  +   Y    + F+K
Sbjct: 523 S-QVIKQRQADPVQFSLAAGQAKPIDMSNKDNFGQSVALRAAQVSDLAKSYGTPLTFFSK 581

Query: 456 TEENQLRTQLVKRPASESVDLIRGAYNTLSDSDKEG--VRSSFAHIEDNGLSAVVR---- 509
            E NQ+       P S+    +    +T+  S   G    S+   I  N  SA V     
Sbjct: 582 DEANQIGVFFRDAPVSQQAAYL----DTIRQSTGGGQVYMSALQQISANAPSAAVAGILM 637

Query: 510 ------------LSSEFSDDAKNAAMVILSGMKHQKDTE 536
                        + + S   + AA  IL+G   +K T+
Sbjct: 638 DKPGGILAEKNWFNPDVSVSPETAAQTILAGAAARKGTD 676


>gi|323156122|gb|EFZ42281.1| prophage MuMc02, structural protein P5 [Escherichia coli EPECa14]
          Length = 837

 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 55/275 (20%), Positives = 103/275 (37%), Gaps = 40/275 (14%)

Query: 290 KLRKETQAQARR-IDAQLNHGITV---------KPSELIPLEDYTQAYGVEQGTELYNLQ 339
           +LR++ QA+ +  ID+Q+                P E     D+  AYGV +G   Y   
Sbjct: 414 QLRRQQQAEYKTMIDSQVRDATAAYMRGVEFPNPPGE----ADFIAAYGVREGNLRYTEF 469

Query: 340 QFKSVAAPDVARIKLMSTFDAKKFLQKIDDEYISNPSLSLASTMMATKYKEILEKSHRQS 399
           +   +A   +   + M T     +++++  +              A  Y  ++  +  Q 
Sbjct: 470 RNTQIAGQYIGSFRNMPTSSITAYVEQLRPD---TGETGEGYAARAALYDNVVSAAS-QV 525

Query: 400 MQELNQDAISWGIKYKQIDPLRFDTEESFADSLRQRAGFVKKIKDDYNLTTSHFNKTEEN 459
           +++   D + + +   Q  P+    +++F  S+  RA  V  +   Y    + F+K E N
Sbjct: 526 IKQRQADPVQFSLAAGQAKPIDMSNKDNFGQSVALRAAQVSDLAKSYGTPLTFFSKDEAN 585

Query: 460 QLRTQLVKRPASESVDLIRGAYNTLSDSDKEG--VRSSFAHIEDNGLSAVVR-------- 509
           Q+       P S+    +    +T+  S   G    S+   I  N  SA V         
Sbjct: 586 QIGVFFRDAPVSQQAAYL----DTIRQSTGGGQVYMSALQQISANAPSAAVAGILMDKPG 641

Query: 510 --------LSSEFSDDAKNAAMVILSGMKHQKDTE 536
                    + + S   + AA  IL+G   +K T+
Sbjct: 642 GILAEKNWFNPDVSVSPETAAQTILAGAAARKGTD 676


>gi|89152439|ref|YP_512272.1| hypothetical structural protein [Escherichia phage phiV10]
 gi|74055462|gb|AAZ95911.1| hypothetical structural protein [Escherichia phage phiV10]
          Length = 837

 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 55/275 (20%), Positives = 103/275 (37%), Gaps = 40/275 (14%)

Query: 290 KLRKETQAQARR-IDAQLNHGITV---------KPSELIPLEDYTQAYGVEQGTELYNLQ 339
           +LR++ QA+ +  ID+Q+                P E     D+  AYGV +G   Y   
Sbjct: 414 QLRRQQQAEYKTMIDSQVRDATAAYMRGVEFPNPPGE----ADFIAAYGVREGNLRYTEF 469

Query: 340 QFKSVAAPDVARIKLMSTFDAKKFLQKIDDEYISNPSLSLASTMMATKYKEILEKSHRQS 399
           +   +A   +   + M T     +++++  +              A  Y  ++  +  Q 
Sbjct: 470 RNTQIAGQYIGSFRNMPTSSITAYVEQLRPD---TGETGEGYAARAALYDNVVSAAS-QV 525

Query: 400 MQELNQDAISWGIKYKQIDPLRFDTEESFADSLRQRAGFVKKIKDDYNLTTSHFNKTEEN 459
           +++   D + + +   Q  P+    +++F  S+  RA  V  +   Y    + F+K E N
Sbjct: 526 IKQRQADPVQFSLAAGQAKPIDMSNKDNFGQSVALRAAQVSDLAKSYGTPLTFFSKDEAN 585

Query: 460 QLRTQLVKRPASESVDLIRGAYNTLSDSDKEG--VRSSFAHIEDNGLSAVVR-------- 509
           Q+       P S+    +    +T+  S   G    S+   I  N  SA V         
Sbjct: 586 QIGVFFRDAPVSQQAAYL----DTIRQSTGGGQVYMSALQQISANAPSAAVAGILMDKPG 641

Query: 510 --------LSSEFSDDAKNAAMVILSGMKHQKDTE 536
                    + + S   + AA  IL+G   +K T+
Sbjct: 642 GILAEKNWFNPDVSVSPETAAQTILAGAAARKGTD 676


>gi|268589385|ref|ZP_06123606.1| hypothetical protein PROVRETT_05517 [Providencia rettgeri DSM 1131]
 gi|291315412|gb|EFE55865.1| hypothetical protein PROVRETT_05517 [Providencia rettgeri DSM 1131]
          Length = 832

 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 58/254 (22%), Positives = 107/254 (42%), Gaps = 37/254 (14%)

Query: 236 TSLSDVSDSARERSLEVVEDVSKAIGLAGWDRLDDTKRRRLLEHLSSRDN--------AL 287
           T LSDV  S  +  +      ++  G   W  L   ++ +L++   +  N         L
Sbjct: 377 TRLSDVDKSQYQPEIRK----AQGGGFPWWPMLTPVQQYQLIKQGEAAQNKQRQEYKSVL 432

Query: 288 NTKLRKETQAQARRIDAQLNHGITVKPSELIPLEDYTQAYGVEQGTELYNLQQFKSVAAP 347
           + K+ K+ +A A R ++  N      PS    L+++  A+G   G + Y   Q       
Sbjct: 433 DGKV-KDAEALALRGESYSN-----PPS----LDEFKYAHGENDGIKEYEQFQKNMAMGA 482

Query: 348 DVARIKLMSTFDAKKFLQ--KIDDEYISNPSLSLASTMMATKYK--EILEKSHRQSMQEL 403
           D+A ++ +S       L+  K   +Y +           A  YK  + L ++     +  
Sbjct: 483 DIATVQYLSPQAQTALLESKKPKGDYDA-----------ANNYKRYDTLARAIDTVNKVR 531

Query: 404 NQDAISWGIKYKQIDPLRFDTEESFADSLRQRAGFVKKIKDDYNLTTSHFNKTEENQLRT 463
             D I + I  +Q++ L F + ++F +SL QR+  V  I  +Y    + F+  EE  L  
Sbjct: 532 ASDPIQFSIDRQQVNQLDFSSIQNFTNSLTQRSSNVGDISKNYQTPLTVFSAQEELVLSQ 591

Query: 464 QLVKRPASESVDLI 477
            + K PAS+ ++ +
Sbjct: 592 LMEKAPASQKIEYL 605


>gi|50282929|ref|YP_052985.1| hypothetical protein VP2p17 [Vibrio phage VP2]
          Length = 694

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 58/257 (22%), Positives = 101/257 (39%), Gaps = 29/257 (11%)

Query: 390 EILEKSHRQSMQELNQDAISWGIKYKQIDPLRFDTEESFAD---SLRQRAGFVKKIKDDY 446
           +I  K+H  +   LN D + +G +   ID   FD    FAD   SL +R   V  +K  Y
Sbjct: 378 DIYTKNHENAKSMLNSDPLMYGAQTGIIDLQPFD----FADPAASLVKRQNDVASMKSQY 433

Query: 447 --NLTTSHFNKTEENQLRTQLVKRPASESVDLIRGAYNTLSDSDKEGVRSSFAHIEDNGL 504
             ++  + F K E  +    +   P  + + ++      LS  +   VRS    +  NG 
Sbjct: 434 GDSMVPAFFTKQEAMEFSRVVQDAPVKDQMRMLSIINGQLSKDNANAVRS---QLMGNGG 490

Query: 505 SAVVRLSSEFSDDAKNAAMVILSG---MKHQKDTETRYNTDHKSNKFDSLYDSYINTPLT 561
             +   S     +    A  IL G   +K   +    ++TD        + ++Y  +P T
Sbjct: 491 GVLAVASDALDSNQPYVAEKILMGRNALKEVPEAFKSWDTDASPLVLSEIGNAYSASPAT 550

Query: 562 KLEQSTAGGNFNKDKEAIKLYLLGSMKDSGNY--TLNRVRVSDAMQIVLGNTPVNINESM 619
                       +  E+IK        + G++  T+N  R+   ++ V G   + I  S 
Sbjct: 551 ----------MGQVMESIKAAYAAQTVNEGDFSGTINSKRLKSVIKEVTGGL-IKIGSST 599

Query: 620 LMPP-RGMSKTDFEDRL 635
           ++ P R M +  F+  L
Sbjct: 600 IVSPDRNMDENKFDSWL 616


>gi|50282962|ref|YP_053018.1| hypothetical protein VP5_gp16 [Vibrio phage VP5]
          Length = 694

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 58/257 (22%), Positives = 101/257 (39%), Gaps = 29/257 (11%)

Query: 390 EILEKSHRQSMQELNQDAISWGIKYKQIDPLRFDTEESFAD---SLRQRAGFVKKIKDDY 446
           +I  K+H  +   LN D + +G +   ID   FD    FAD   SL +R   V  +K  Y
Sbjct: 378 DIYTKNHENAKSMLNSDPLMYGAQTGIIDLQPFD----FADPAASLVKRQNDVASMKSQY 433

Query: 447 --NLTTSHFNKTEENQLRTQLVKRPASESVDLIRGAYNTLSDSDKEGVRSSFAHIEDNGL 504
             ++  + F K E  +    +   P  + + ++      LS  +   VRS    +  NG 
Sbjct: 434 GDSMVPAFFTKQEAMEFSRVVQDAPVKDQMRMLSIINGQLSKDNANAVRS---QLMGNGG 490

Query: 505 SAVVRLSSEFSDDAKNAAMVILSG---MKHQKDTETRYNTDHKSNKFDSLYDSYINTPLT 561
             +   S     +    A  IL G   +K   +    ++TD        + ++Y  +P T
Sbjct: 491 GVLAVASDALDSNQPYVAEKILMGRNALKEVPEAFKSWDTDASPLVLSEIGNAYSASPAT 550

Query: 562 KLEQSTAGGNFNKDKEAIKLYLLGSMKDSGNY--TLNRVRVSDAMQIVLGNTPVNINESM 619
                       +  E+IK        + G++  T+N  R+   ++ V G   + I  S 
Sbjct: 551 ----------MGQVMESIKAAYAAQTVNEGDFSGTINSKRLKSVIKEVTGGL-IKIGSST 599

Query: 620 LMPP-RGMSKTDFEDRL 635
           ++ P R M +  F+  L
Sbjct: 600 IVSPDRNMDENKFDSWL 616


>gi|298381707|ref|ZP_06991306.1| minor structural protein [Escherichia coli FVEC1302]
 gi|298279149|gb|EFI20663.1| minor structural protein [Escherichia coli FVEC1302]
          Length = 837

 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 55/275 (20%), Positives = 103/275 (37%), Gaps = 40/275 (14%)

Query: 290 KLRKETQAQARR-IDAQLNHGITV---------KPSELIPLEDYTQAYGVEQGTELYNLQ 339
           +LR++ QA+ +  ID+Q+                P E     D+  AYGV +G   Y   
Sbjct: 414 QLRRQQQAEYKTMIDSQVRDATAAYMRGVEFPNPPGE----ADFIAAYGVREGNLRYTEF 469

Query: 340 QFKSVAAPDVARIKLMSTFDAKKFLQKIDDEYISNPSLSLASTMMATKYKEILEKSHRQS 399
           +   +A   +   + M T     +++++  +              A  Y  ++  +  Q 
Sbjct: 470 RNTQIAGQYIGSFRNMPTSSITAYVEQLRPD---TGETGEGYAARAALYDNVVSAAS-QV 525

Query: 400 MQELNQDAISWGIKYKQIDPLRFDTEESFADSLRQRAGFVKKIKDDYNLTTSHFNKTEEN 459
           +++   D + + +   Q  P+    +++F  S+  RA  V  +   Y    + F+K E N
Sbjct: 526 IKQRQADPVQFSLAAGQAKPIDMSNKDNFGQSVALRATQVSDLAKSYGTPLTFFSKDEAN 585

Query: 460 QLRTQLVKRPASESVDLIRGAYNTLSDSDKEG--VRSSFAHIEDNGLSAVVR-------- 509
           Q+       P S+    +    +T+  S   G    S+   I  N  SA V         
Sbjct: 586 QIGVFFRDAPVSQQAAYL----DTIRQSTGGGQVYMSALQQISANAPSAAVAGILMDKPG 641

Query: 510 --------LSSEFSDDAKNAAMVILSGMKHQKDTE 536
                    + + S   + AA  IL+G   +K T+
Sbjct: 642 GILAEKNWFNPDVSVSPETAAQTILAGAAARKGTD 676


>gi|269975302|gb|ACZ55526.1| primase [Staphylococcus phage SA1]
          Length = 326

 Score = 38.1 bits (87), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 22/91 (24%)

Query: 177 ITDHINSLPIDLRLKQKLL--SEAKEKLNTNQIIGAHARDPRVFENFMRA---------- 224
            T+H N+LP+D   ++ L+  ++A+  L+  ++ G+ A   R F+N  RA          
Sbjct: 115 FTNHFNALPLDENQRRYLVVSTQAENHLDMERVYGSKAERSRFFKNVYRAIDNHVPALKK 174

Query: 225 ----------FYKKGHPPKDSTSLSDVSDSA 245
                     F  KGH P+D+ + + ++D++
Sbjct: 175 WFLDWEISPEFDHKGHAPQDTEAFAIMADAS 205


>gi|116003915|ref|NP_001070317.1| CST complex subunit STN1 [Bos taurus]
 gi|122132203|sp|Q08DB2|STN1_BOVIN RecName: Full=CST complex subunit STN1; AltName:
           Full=Oligonucleotide/oligosaccharide-binding
           fold-containing protein 1; AltName: Full=Suppressor of
           cdc thirteen homolog
 gi|115305224|gb|AAI23848.1| Oligonucleotide/oligosaccharide-binding fold containing 1 [Bos
           taurus]
 gi|296472683|gb|DAA14798.1| oligonucleotide/oligosaccharide-binding fold containing 1 [Bos
           taurus]
          Length = 370

 Score = 37.7 bits (86), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 88/197 (44%), Gaps = 28/197 (14%)

Query: 224 AFYKKGHPPKDSTSLSDVSDSARERSLEV---VEDVSKAIGLAGWDRLDDTKRRRLLEHL 280
            F+  GHP K    L  V    RE+       V+D +  I    W RL++TK        
Sbjct: 46  VFFYNGHPIKQVDILGTVI-GVREKDAFYSYGVDDSTGVINCICWKRLNNTKSSSATATP 104

Query: 281 SSRDNALNTKLRKETQAQARRIDAQLNHGITVKPSELIPLEDYTQAYGVEQGTELYNLQQ 340
           S+R+ +L ++L+K  +  A+R  A+L  G      ++I +  + + +  E+  E++    
Sbjct: 105 SARELSLTSQLKKLQETIAQR--AKLEIG------DIIRVRGHIRMFRGER--EIHATTY 154

Query: 341 FK---SVAAPDVARIKLMSTFDAKKFLQKI------DDEYISNPS---LSLASTMMATKY 388
           +K    V    +AR+  +     K + Q        +DE +SNP    L   + +++ K 
Sbjct: 155 YKVDDPVCNVQIARMLELPAIYRKVYDQPFHSPALKEDEALSNPGTLDLDSLTCLLSEKA 214

Query: 389 KEILEKSHRQSM--QEL 403
           KE L ++  QS   QEL
Sbjct: 215 KEFLVENRVQSFYQQEL 231


>gi|328954399|ref|YP_004371733.1| Protein translocase subunit secA [Desulfobacca acetoxidans DSM
           11109]
 gi|328454723|gb|AEB10552.1| Protein translocase subunit secA [Desulfobacca acetoxidans DSM
           11109]
          Length = 840

 Score = 37.4 bits (85), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 103/509 (20%), Positives = 203/509 (39%), Gaps = 89/509 (17%)

Query: 32  RDLGDALGKATQFLEGIRRDNAFATANTRYTELSFKAVQDFHDFTNSLDTRDSLQAGDKI 91
           R   D L +A +  EG+R +N   T  +   +  F+  Q     T + DT    +A +  
Sbjct: 329 RRYSDGLHQALEAKEGVRIENENQTLASITFQNYFRMYQKLAGMTGTADT----EAEEFK 384

Query: 92  KEY-VDGRIRSAYDRFLSSISHRDV-----RKKFQAQVEHDIRDYHTKGVDIQIGATQRA 145
           K Y ++  +   + R +  + H D       +KFQA VE +I+D H +G  + +G T   
Sbjct: 385 KIYNLEVMVVPTHKRMI-RVDHPDAIYKSESEKFQAVVE-EIKDCHQQGQPVLVGTTSIE 442

Query: 146 QEDNLNMTVGLAAAHVLHDPSNENYFQR-----VQSITDHINSLPIDL--RLKQKLLSEA 198
           + + L+    L A  + H+  N  + ++      Q+    + ++  ++  R    +L   
Sbjct: 443 KSERLSRM--LKAQGIKHEVLNAKHHEKEAQIVAQAGQSGMVTIATNMAGRGTDIVLGTG 500

Query: 199 KEKLNTNQIIGAHARDPRVFENFMRAFY-KKGHPPKDSTSLSDVSDSARERSLEVVEDVS 257
                   IIG    + R  +N +R    ++G P      LS   D  R    + ++++ 
Sbjct: 501 VVDRGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLLRIFGSDRIKNLM 560

Query: 258 KAIGLAGWDRLDDTKRRRLLE---------------HLSSRDNALNTKL------RKET- 295
             +G+     ++       +E               HL   DN +N +       R+E  
Sbjct: 561 GRLGMEDGQPIEHRMVSSAIERAQKRVEAHNFDIRKHLLEYDNVMNKQREVIYGKRREIL 620

Query: 296 -----QAQARRIDAQLNHGITVKPSELIPLEDYTQAYGVEQG--------TELYNL--QQ 340
                + + +++ A +  G+ V+ ++   + +     G+E+          EL  L  + 
Sbjct: 621 GGEDLEEEIQQMAADMVDGLLVQFTDPRTMPEDWDLKGLEEALWRQFGLHIELSRLSPEN 680

Query: 341 FKSVAAPDVARIKLMSTFDAKKFLQKIDDEYISNPSLSLASTMMATKYKEILEKSHRQSM 400
                 P++   ++++ F+ K+  Q I  EY  +    +   M+ T +K+     H  +M
Sbjct: 681 LDGEKLPELLHQQVLAAFEGKR--QAIGPEYFPSLQQQIMLQMVDTHWKD-----HLLAM 733

Query: 401 QELNQDAISWGIK-YKQIDPLRFDTEESFADSLRQRAGFVKKIKDDYNLTTSHFNKTEEN 459
             L +D I  G++ Y Q+DPLR   +E                   Y++      + +EN
Sbjct: 734 DHL-RDGI--GLRGYAQVDPLRAYQKEG------------------YDMFMEMMQRIQEN 772

Query: 460 QLRTQ-LVKRPASESVDLIRGAYNTLSDS 487
            +RT  L++    E + L++G    +S S
Sbjct: 773 TVRTIFLIRLRQPEEIALLQGRQTPMSYS 801


>gi|328883363|emb|CCA56602.1| hypothetical protein SVEN_3316 [Streptomyces venezuelae ATCC 10712]
          Length = 230

 Score = 37.4 bits (85), Expect = 9.2,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 3/80 (3%)

Query: 393 EKSHRQSMQELNQDAISWGIKYKQIDPLRFDTEESFADSLRQRAGFVKKIKDDYNLTTSH 452
           EK  + +++ELN  A+++    KQ+D L    ++ FAD L+  A  + KI+    +  + 
Sbjct: 115 EKVQQDAIKELNATAVAYEGLKKQVDALDPTNQQKFADGLQGVADGLTKIE---KMDQNA 171

Query: 453 FNKTEENQLRTQLVKRPASE 472
            +K EE +L   + K+P  +
Sbjct: 172 LSKLEEGELGQAMAKQPGCQ 191


Searching..................................................done


Results from round 2




>gi|254781204|ref|YP_003065617.1| hypothetical protein CLIBASIA_05555 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040881|gb|ACT57677.1| hypothetical protein CLIBASIA_05555 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|317120670|gb|ADV02493.1| hypothetical protein SC1_gp045 [Liberibacter phage SC1]
 gi|317120814|gb|ADV02635.1| hypothetical protein SC1_gp045 [Candidatus Liberibacter asiaticus]
          Length = 707

 Score =  957 bits (2473), Expect = 0.0,   Method: Composition-based stats.
 Identities = 707/707 (100%), Positives = 707/707 (100%)

Query: 1   MIEITTNKPLVEAVTPNQDAVRDSVNPQAGLRDLGDALGKATQFLEGIRRDNAFATANTR 60
           MIEITTNKPLVEAVTPNQDAVRDSVNPQAGLRDLGDALGKATQFLEGIRRDNAFATANTR
Sbjct: 1   MIEITTNKPLVEAVTPNQDAVRDSVNPQAGLRDLGDALGKATQFLEGIRRDNAFATANTR 60

Query: 61  YTELSFKAVQDFHDFTNSLDTRDSLQAGDKIKEYVDGRIRSAYDRFLSSISHRDVRKKFQ 120
           YTELSFKAVQDFHDFTNSLDTRDSLQAGDKIKEYVDGRIRSAYDRFLSSISHRDVRKKFQ
Sbjct: 61  YTELSFKAVQDFHDFTNSLDTRDSLQAGDKIKEYVDGRIRSAYDRFLSSISHRDVRKKFQ 120

Query: 121 AQVEHDIRDYHTKGVDIQIGATQRAQEDNLNMTVGLAAAHVLHDPSNENYFQRVQSITDH 180
           AQVEHDIRDYHTKGVDIQIGATQRAQEDNLNMTVGLAAAHVLHDPSNENYFQRVQSITDH
Sbjct: 121 AQVEHDIRDYHTKGVDIQIGATQRAQEDNLNMTVGLAAAHVLHDPSNENYFQRVQSITDH 180

Query: 181 INSLPIDLRLKQKLLSEAKEKLNTNQIIGAHARDPRVFENFMRAFYKKGHPPKDSTSLSD 240
           INSLPIDLRLKQKLLSEAKEKLNTNQIIGAHARDPRVFENFMRAFYKKGHPPKDSTSLSD
Sbjct: 181 INSLPIDLRLKQKLLSEAKEKLNTNQIIGAHARDPRVFENFMRAFYKKGHPPKDSTSLSD 240

Query: 241 VSDSARERSLEVVEDVSKAIGLAGWDRLDDTKRRRLLEHLSSRDNALNTKLRKETQAQAR 300
           VSDSARERSLEVVEDVSKAIGLAGWDRLDDTKRRRLLEHLSSRDNALNTKLRKETQAQAR
Sbjct: 241 VSDSARERSLEVVEDVSKAIGLAGWDRLDDTKRRRLLEHLSSRDNALNTKLRKETQAQAR 300

Query: 301 RIDAQLNHGITVKPSELIPLEDYTQAYGVEQGTELYNLQQFKSVAAPDVARIKLMSTFDA 360
           RIDAQLNHGITVKPSELIPLEDYTQAYGVEQGTELYNLQQFKSVAAPDVARIKLMSTFDA
Sbjct: 301 RIDAQLNHGITVKPSELIPLEDYTQAYGVEQGTELYNLQQFKSVAAPDVARIKLMSTFDA 360

Query: 361 KKFLQKIDDEYISNPSLSLASTMMATKYKEILEKSHRQSMQELNQDAISWGIKYKQIDPL 420
           KKFLQKIDDEYISNPSLSLASTMMATKYKEILEKSHRQSMQELNQDAISWGIKYKQIDPL
Sbjct: 361 KKFLQKIDDEYISNPSLSLASTMMATKYKEILEKSHRQSMQELNQDAISWGIKYKQIDPL 420

Query: 421 RFDTEESFADSLRQRAGFVKKIKDDYNLTTSHFNKTEENQLRTQLVKRPASESVDLIRGA 480
           RFDTEESFADSLRQRAGFVKKIKDDYNLTTSHFNKTEENQLRTQLVKRPASESVDLIRGA
Sbjct: 421 RFDTEESFADSLRQRAGFVKKIKDDYNLTTSHFNKTEENQLRTQLVKRPASESVDLIRGA 480

Query: 481 YNTLSDSDKEGVRSSFAHIEDNGLSAVVRLSSEFSDDAKNAAMVILSGMKHQKDTETRYN 540
           YNTLSDSDKEGVRSSFAHIEDNGLSAVVRLSSEFSDDAKNAAMVILSGMKHQKDTETRYN
Sbjct: 481 YNTLSDSDKEGVRSSFAHIEDNGLSAVVRLSSEFSDDAKNAAMVILSGMKHQKDTETRYN 540

Query: 541 TDHKSNKFDSLYDSYINTPLTKLEQSTAGGNFNKDKEAIKLYLLGSMKDSGNYTLNRVRV 600
           TDHKSNKFDSLYDSYINTPLTKLEQSTAGGNFNKDKEAIKLYLLGSMKDSGNYTLNRVRV
Sbjct: 541 TDHKSNKFDSLYDSYINTPLTKLEQSTAGGNFNKDKEAIKLYLLGSMKDSGNYTLNRVRV 600

Query: 601 SDAMQIVLGNTPVNINESMLMPPRGMSKTDFEDRLWYATKDTGEYDPYTIKYMNVGSGKY 660
           SDAMQIVLGNTPVNINESMLMPPRGMSKTDFEDRLWYATKDTGEYDPYTIKYMNVGSGKY
Sbjct: 601 SDAMQIVLGNTPVNINESMLMPPRGMSKTDFEDRLWYATKDTGEYDPYTIKYMNVGSGKY 660

Query: 661 MIIKNGNPKVDKEGKTIIINVEDVNRDERMESTIRHYEHQIFNEHAP 707
           MIIKNGNPKVDKEGKTIIINVEDVNRDERMESTIRHYEHQIFNEHAP
Sbjct: 661 MIIKNGNPKVDKEGKTIIINVEDVNRDERMESTIRHYEHQIFNEHAP 707


>gi|317120711|gb|ADV02533.1| hypothetical protein SC2_gp045 [Liberibacter phage SC2]
 gi|317120772|gb|ADV02593.1| hypothetical protein SC2_gp045 [Candidatus Liberibacter asiaticus]
          Length = 753

 Score =  749 bits (1934), Expect = 0.0,   Method: Composition-based stats.
 Identities = 134/719 (18%), Positives = 284/719 (39%), Gaps = 50/719 (6%)

Query: 16  PNQDAVRDSVNPQAGLRDLGDALGKATQFL-EGIRRDNAFATANTRYTELSFKAVQDFHD 74
           P ++ V+   +P  GLRD+ + L ++T+ + E +RR +AF  A++ + + + +A + F++
Sbjct: 16  PVKEHVQQRYSPDEGLRDIANKLNQSTKLIEETVRRQSAFK-ADSEFLQTTVEAEKVFNE 74

Query: 75  FTNSLDTRDSLQAGDKIKEYVDGRIRSAYDRFLSSISHRDVRKKFQAQVEHDIRDYHTKG 134
               L   +  +    ++  +   I+  Y +    + + +VR+    Q    +  +  K 
Sbjct: 75  KLQGLQGGNEEEVKKNLESILSNDIKPLYGKMHEKLDYPEVRRHILQQSNKQMARFQLKA 134

Query: 135 VDIQIGATQRAQEDNLNMTVGLAAAHVLHDPSNENYFQRVQSITDHINSLPIDLRLKQKL 194
            + ++G   +  E+ +       +  +L D S+ NY ++VQ  +D I+ LP++   K   
Sbjct: 135 NEYKLGFQVQRTEEGIREIERSVSNSLLLDGSDSNYREKVQFASDAIDKLPLNPTTKDAR 194

Query: 195 LSEAKEKLNTNQIIGAHARDPRVFENFMRAFYKKGHPPKDSTSLSDVSDSARERSLEVVE 254
               +E     Q       +P+VF +F++    +G    D ++++D+ D+    +  V +
Sbjct: 195 RRTTRENAALAQAQRYMVDNPQVFSSFIQKREGQGSKIDDKSTIADIVDNTPLDTFSVND 254

Query: 255 DVSKAIG-LAGWDRLDDTKRRRLLEHLSSRDNALNTKLRKETQAQARRIDAQLNHGITVK 313
            V        GW  L   K+  +L+ +++       + R     + + I + L  GIT K
Sbjct: 255 TVVDNTNPFEGWKDLSTQKKIAILKEVANASTTGKQEERSRVGTKIKNIASFLERGITPK 314

Query: 314 PSELIPL--EDYTQAYGVEQGTELYNLQQFKSVAAPDVARIKLMSTFDAKKFLQKIDDEY 371
             +   L  ++    +G  +G  L +  Q     AP + +I LM     +  L K+  + 
Sbjct: 315 NIQDADLSEDNLRHLFGNTRGQMLSSQLQTLKEFAPKINQIFLMPNDQVETELTKLKPDV 374

Query: 372 ISNPSLSLASTMMATKYKEILEKSHRQSMQELNQDAISWGIKYKQIDPLRFDTEESFADS 431
            +       + + +   K + +       +E  +  I W I +     +  D    + D 
Sbjct: 375 QNLVGAEFKNKLYSDGVKAVYKND-----KERKEHPIKWAITHGLTQEMP-DEPSKWGDF 428

Query: 432 LRQRAGFVKKIKDDYNLTTSHFNKTEENQLRTQLVKRPASESVDLIRGAYNTLSDSDKEG 491
              R    + +K  Y +++   +K E  +L   L K  + + V  +      L       
Sbjct: 429 FVHRREVSQTLKGFYGVSSPLISKEESRKLTQYLDKLESKDVVSHLEDYAERLGGLKNSV 488

Query: 492 VRSSFAHIEDNGLSAVVRLSSEFSDDAKNAAMVILSGMKHQKDTETRYNTDHKSNKFDSL 551
              +   +E   +  V  L     DD  + A  +L G K++         D    +FD+ 
Sbjct: 489 WIEAMQSLEHPVMGEVGLL---LKDDP-DVASDVLRGYKYRVRNRGENIRDITGERFDAW 544

Query: 552 YDSYINTPLTKLEQST---AGGNFNKDKEAIKLYLLGSMKDSGNYTLNRV---------- 598
           +          +  S        F++  + +  +L G +     Y+ +            
Sbjct: 545 FKERFREKYGNVFASIGDYGDAEFDRASKLVGYHLAGELLSDKTYSFHEAPTQSLKEWVL 604

Query: 599 ---------RVSDAMQIVLGNTPVNINE--SMLMPPRGMSKTDFEDRLWYATKDTGEYDP 647
                     +  + + V+GN PV + +  S L+PPRGMS  DF ++     +   E   
Sbjct: 605 RQPASQYDKNLQHSFEAVVGNIPVPMGDFKSPLIPPRGMSSEDFTNKFTAVAQQVFEESG 664

Query: 648 YT---IKYMNV-----GSGKYMIIKNGNPKVD-KEGKTIIINV--EDVNRDERMESTIR 695
            +     Y N+     GS +Y++        + K G  ++I V    +  ++ ++ T++
Sbjct: 665 LSGKEYGYENIGPTSDGSAQYLVKFGREYIHNPKTGAPLVIEVSPYSIEHEQTIQKTLK 723


>gi|315122890|ref|YP_004063379.1| hypothetical protein CKC_05730 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313496292|gb|ADR52891.1| hypothetical protein CKC_05730 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 583

 Score =  565 bits (1456), Expect = e-159,   Method: Composition-based stats.
 Identities = 146/561 (26%), Positives = 255/561 (45%), Gaps = 37/561 (6%)

Query: 146 QEDNLNMTVGLAAAHVLHDPSNENY-FQRVQS--ITDHINSLPIDLRLKQKLLSEAKEKL 202
            E ++  T    A ++   P+NEN   QR +   + D     P D   K++ L +    L
Sbjct: 5   SEKHIGDTAVALALNIRLSPTNENLELQRNRGYDVIDKSLLTPEDKVKKKQALDKT---L 61

Query: 203 NTNQIIGAHARDPRVFENFMRAFYKKGHPPKDSTSLSDVSDSARERSLEVVEDVSKAIGL 262
           + +Q IG  + +P +  N     Y      KD  S   ++++A   ++E+  D  K  G 
Sbjct: 62  HKSQTIGLLSNEPDIVGNLSSLVYGSPVAVKDGLSPDQIAENADGGTIEI--DEHKLDGK 119

Query: 263 AGWDRLDDTKRRRLLEHLSSRDNALNTKLRKETQAQARRI-------DAQLNHG-ITVKP 314
            G+  +D   R    E L S  +  N K   E Q+  +R+         + N G I+   
Sbjct: 120 TGYTGIDSLSR----EDLKSLLDEHNRKTNAERQSGKKRVIETIKLRTTEANKGNISSDY 175

Query: 315 SELIPLEDYTQAYGVEQGTELYNLQQFKSVAAPDVARIKLMSTFDAKKFLQKIDDEYISN 374
            E+    + ++ Y       +    + K   AP +  ++ M+  +  +F+  ++   +  
Sbjct: 176 DEVFSESNLSRYYQPADVESIITQAKLKKDIAPYIRVVETMTNEEYAEFVSTVNSRTVD- 234

Query: 375 PSLSLASTMMATKYKEILEKSHRQSMQELNQDAISWGIKYKQIDPLRFDTEES-FADSLR 433
               L     A  + + L+     S++EL++D   W  + + + P     E    A S+ 
Sbjct: 235 --YDLNDRFKAQAFLKELQDKRVASLKELSKDPHGWQ-RSRGLVPPNLSLEAGQLASSVL 291

Query: 434 QRAGFVKKIKDDYNLTTSHFNKTEENQLRTQLVKRPASESVDLIRGAYNT--LSDSDKEG 491
                 +K + D+ +        +E QL  ++    A + V   R       ++ SD E 
Sbjct: 292 PIFDANEKTEKDHGVIVKGMGTDKERQLSEKIKGERAEDFVSYFRDEMTKEGVTKSDIEK 351

Query: 492 VRSSFAHIEDNGLSAVVRLSSEFSDDAKNAAMVILSGMKHQKDTETRYNTDHKSNKFDSL 551
           ++S    ++D   S++ RL+   S +A+ +A+ ++SG+KH+ D E +  +  K N    L
Sbjct: 352 IKSVVDGMKDKVTSSICRLAMSDSAEARASAIPVISGVKHRGDIELKLESS-KGNGVKKL 410

Query: 552 YDSYINTPLTKLEQSTAGGNFNKDKEAIKLYLLGSMKDSGNYTLNRVRVSDAMQIVLGNT 611
           +++ IN  + +L Q +   N+ +D E IKLY++G+M  +GNYTLN   V DA++ V GNT
Sbjct: 411 FNNLINKEIGQLYQGSEDANYKQDAEVIKLYIMGNMHKTGNYTLNGEVVRDAVKAVFGNT 470

Query: 612 PVNINESMLMPPRGMSKTDFEDRLWYATKD--TGEYD-------PYTIKYMNVGSGKYMI 662
              +N S +MPPRGMS  +F +RL   T D   G +        P +  Y + G GKY +
Sbjct: 471 AYAVNGSYVMPPRGMSHYEFGNRLHGLTSDKLVGLFGDKSKDRYPESYGYQSEGDGKYSL 530

Query: 663 IKNGNPKVDKEGKTIIINVED 683
              G  K DK+G  I+IN+ D
Sbjct: 531 TVGGVYKKDKQGNPIVINIYD 551


>gi|315121928|ref|YP_004062417.1| hypothetical protein CKC_00890 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495330|gb|ADR51929.1| hypothetical protein CKC_00890 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 547

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 142/554 (25%), Positives = 249/554 (44%), Gaps = 37/554 (6%)

Query: 146 QEDNLNMTVGLAAAHVLHDPSNENY-FQRVQS--ITDHINSLPIDLRLKQKLLSEAKEKL 202
            E ++  T    A ++   P+NEN   QR +   + D     P D   K++ L +    L
Sbjct: 5   SEKHIGDTAVALALNIRLSPTNENLELQRNRGYDVIDKSLLTPEDKVKKKQALDKT---L 61

Query: 203 NTNQIIGAHARDPRVFENFMRAFYKKGHPPKDSTSLSDVSDSARERSLEVVEDVSKAIGL 262
           + +Q IG  + +P +  N     Y      KD  S   ++++A   ++E+  D  K  G 
Sbjct: 62  HKSQTIGLLSNEPDIVGNLSSLVYGSPVAVKDGLSPDQIAENADGGTIEI--DEHKLDGK 119

Query: 263 AGWDRLDDTKRRRLLEHLSSRDNALNTKLRKETQAQARRI-------DAQLNHG-ITVKP 314
            G+  +D   R    E L S  +  N K   E Q+  +R+         + N G I+   
Sbjct: 120 TGYTGIDSLSR----EDLKSLLDEHNRKTNAERQSGKKRVIETIKLRTTEANKGNISSDY 175

Query: 315 SELIPLEDYTQAYGVEQGTELYNLQQFKSVAAPDVARIKLMSTFDAKKFLQKIDDEYISN 374
            E+    + ++ Y       +    + K   AP +  ++ M+  +  +F+  ++   +  
Sbjct: 176 DEVFSESNLSRYYQPADVESIITQAKLKKDIAPYIRVVETMTNEEYAEFVSTVNSRTVD- 234

Query: 375 PSLSLASTMMATKYKEILEKSHRQSMQELNQDAISWGIKYKQIDPLRFDTEES-FADSLR 433
               L     A  + + L+     S++EL++D   W  + + + P     E    A S+ 
Sbjct: 235 --YDLNDRFKAQAFLKELQDKRVASLKELSKDPHGWQ-RSRGLVPPNLSLEAGQLASSVL 291

Query: 434 QRAGFVKKIKDDYNLTTSHFNKTEENQLRTQLVKRPASESVDLIRGAYNT--LSDSDKEG 491
                 +K + D+ +        +E QL  ++    A + V   R       ++ SD E 
Sbjct: 292 PIFDANEKTEKDHGVIVKGMGTDKERQLSEKIKGERAEDFVSYFRDEMTKEGVTKSDIEK 351

Query: 492 VRSSFAHIEDNGLSAVVRLSSEFSDDAKNAAMVILSGMKHQKDTETRYNTDHKSNKFDSL 551
           ++S    ++D   S++ RL+   S +A+ +A+ ++SG+KH+ D E +  +  K N    L
Sbjct: 352 IKSVVDGMKDKVTSSICRLAMSDSAEARASAIPVISGVKHRGDIELKLESS-KGNGVKKL 410

Query: 552 YDSYINTPLTKLEQSTAGGNFNKDKEAIKLYLLGSMKDSGNYTLNRVRVSDAMQIVLGNT 611
           +++ IN  + +L Q +   N+ +D E IKLY++G+M  +GNYTLN   V DA++ V GNT
Sbjct: 411 FNNLINKEIGQLYQGSEDANYKQDAEVIKLYIMGNMHKTGNYTLNGEVVRDAVKAVFGNT 470

Query: 612 PVNINESMLMPPRGMSKTDFEDRLWYATKD--TGEYD-------PYTIKYMNVGSGKYMI 662
              +N S +MPPRGMS  +F +RL   T D   G +        P +  Y + G GKY +
Sbjct: 471 AYAVNGSYVMPPRGMSHYEFGNRLHGLTSDKLVGLFGDKSKDRYPESYGYQSEGDGKYSL 530

Query: 663 IKNGNPKVDKEGKT 676
              G  K DK+G  
Sbjct: 531 TVGGVYKKDKQGHP 544


>gi|85059171|ref|YP_454873.1| hypothetical protein SG1193 [Sodalis glossinidius str. 'morsitans']
 gi|84779691|dbj|BAE74468.1| hypothetical phage protein [Sodalis glossinidius str. 'morsitans']
          Length = 843

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 92/458 (20%), Positives = 171/458 (37%), Gaps = 59/458 (12%)

Query: 263 AGWDRLDDTKRRRLLEHLSSRDNALNTKLRKETQAQARRIDAQLNHGITVKPSELIPLED 322
               +LD  +  RL      + N    + R E + + +   A    G           ++
Sbjct: 394 TAVTQLDPVQLARLRSVAQGQLNQQQREYRVELEGELKDFTAAALRG--KNYPREFTADE 451

Query: 323 YTQAYGVEQGTELY----NLQQFKSVAAPDVARIKLMSTFDAKKFLQKIDDEYISNPSLS 378
           +T+AYG + G + Y    + QQ  S    D++ ++ +S    +  L   +      P   
Sbjct: 452 FTRAYGYDAGQKAYANYLDTQQLGS----DISTVQQLSPVGQQALLNAREPV----PGEG 503

Query: 379 LASTMMATKYKEILEKSHRQSMQELNQDAISWGIKYKQIDPLRFDTEESFADSLRQRAGF 438
            A    A K  E L+K+     +   QD + +  + KQI PL   T E+F   L  R   
Sbjct: 504 YAE---AAKRHETLQKAVEYVNRARMQDPVQYAAEQKQIAPLDMQTPEAFRAGLSSRGSL 560

Query: 439 VKKIKDDYNLTTSHFNKTEENQLRTQLVKRPASESVDLIRGAYNTLSDSDKEGVRSSF-- 496
             ++   Y    + F+++E +Q+   L   PAS+S+  +    + L      GV+ S   
Sbjct: 561 APELARHYGTPLAIFSQSEASQIGEMLRSAPASQSIAYL----DALRQGLGAGVQYSAAL 616

Query: 497 AHIEDNGLSAVVR-----------------LSSEFSDDAKNAAMVILSGMKHQKDTETRY 539
             +     SA V                  LS++      +AA  I+ G   +    T  
Sbjct: 617 QQVSRYAPSAAVAGAIMGKRGNVIGNEGGWLSADLMVTPDDAAKTIIEGANARAGVTTNV 676

Query: 540 N-TDHKSNKFDSLYDSYINTPLTKLEQSTAGGNFNKDKEA-------IKLYLLGSMKDSG 591
           N  ++K+   +   D+ +            G  F  D E         K Y  G M   G
Sbjct: 677 NGVENKTRGIEMPKDTDLRPEFV----DKVGKAFAGDAEGAAQAYDVAKDYYAGVMARKG 732

Query: 592 NYT--LNRVRVSDAMQIVLGNTPVNINESMLMPPRGMSKTDFEDRLWYATK-----DTGE 644
           N +   ++   + A+ +  G       +  ++ P GMS++ F   +  A K     D  +
Sbjct: 733 NVSGEYDKDTWTQAINVATGGVYDYGGQGDVLLPWGMSESQFNKAVGVAWKKQVLDDGIK 792

Query: 645 YDPYTIKYMNVGSGKYMIIKNGNPKVDKEGKTIIINVE 682
             P      + G  +Y++   G   + K+G+ ++++++
Sbjct: 793 PPPGRYGLQSHGDSQYLVKLGGGYLLGKDGRPVVLHID 830


>gi|218700979|ref|YP_002408608.1| hypothetical protein ECIAI39_2669 [Escherichia coli IAI39]
 gi|218370965|emb|CAR18792.1| conserved hypothetical protein from phage origin [Escherichia coli
           IAI39]
          Length = 837

 Score =  217 bits (551), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 87/542 (16%), Positives = 184/542 (33%), Gaps = 48/542 (8%)

Query: 171 FQRVQSITDHINSL--PIDLRLKQKLLSEAKEKLNTNQIIGAHARDPRVFENFMRAF--- 225
            Q + ++++ IN    P D       +    E+L  +      A +P   +    A    
Sbjct: 300 RQGIDTVSEIINRWAPPTDKNDTMSYIKAVCEQLGVSADEPLDASNPDTLKALCAAIIHH 359

Query: 226 YKKGHPPKDSTSLSDVSDSARERSLEVVEDVSKAIGLAGWDRLDDTKRRRLLEHLSSRDN 285
                P  D    + V  SA     ++     +  G+A +D L ++ +  +L    +   
Sbjct: 360 ENGSQPYSDQQLTAGV--SAALGLSQLPTKNKRYTGIAWFDALSESDQASVLRQTDALAR 417

Query: 286 ALNTKLRKETQAQARRIDAQLNHGITVKPSELIPLEDYTQAYGVEQGTELYNLQQFKSVA 345
               + +    ++ R   A    GI          +D+  AYGV +G   Y   +   +A
Sbjct: 418 QQQAEYKTMLDSRVRDATAAYMRGIEFPNPP--GEDDFIAAYGVREGNLRYTEFKNTQIA 475

Query: 346 APDVARIKLMSTFDAKKFLQKIDDEYISNPSLSLASTMMATKYKEILEKSHRQSMQELNQ 405
              +   + M T     +++++  +         A+        + +  +  Q +++   
Sbjct: 476 GQYIGSFRNMPTSSITAYVEQLRPDTGDT-GEGYAAR---ATLYDNVVSAANQVIKQRQS 531

Query: 406 DAISWGIKYKQIDPLRFDTEESFADSLRQRAGFVKKIKDDYNLTTSHFNKTEENQLRTQL 465
           D + + +   Q  P+    +++F  S+  RA  V  +   Y    + F+K E NQ+    
Sbjct: 532 DPVQFSLASGQAKPIDMSNKDNFGQSVALRAAQVSDLAKSYGTPLTFFSKDEANQIGVFF 591

Query: 466 VKRPASESVDLIRGAYNTLSDSDKEGVRSSFAHIEDNGLSAVVR---------------- 509
              P S+    +     +      +   S+   I  N  SA V                 
Sbjct: 592 RDAPVSQQAAYLDTIRQSTGGG--QVYMSALQQISANAPSAAVAGILMDKPGGILAEKNW 649

Query: 510 LSSEFSDDAKNAAMVILSGMKHQKDTETRYNTDHKSNKFDSLYDSYINTPLTKLEQSTAG 569
            + + S   + AA  IL+G   +K T+        +       D+ +    + + +    
Sbjct: 650 FNPDVSVSPETAAQTILAGAAARKGTD-------DAKGIPMPKDADLRLEFSDMVKDAFA 702

Query: 570 GNFNKDK---EAIKLYLLGSMKDSGNYT--LNRVRVSDAMQIVLGNTPVNINESMLMPPR 624
           G+        E  K Y  G M   G  +  ++      A+ +  G          ++ P 
Sbjct: 703 GDAQGASMAYEIAKDYYAGVMAKKGVVSGEIDNDVWKQAVNVATGGVHDYNGMGNVLLPW 762

Query: 625 GMSKTDFEDRLWYATKD-----TGEYDPYTIKYMNVGSGKYMIIKNGNPKVDKEGKTIII 679
           GMS   F+ ++  A  +       +  P      + G  +Y++       +  +G  +++
Sbjct: 763 GMSAEQFDKQVNQAWNEQVVGSGIKTPPGQYGLQSYGDSQYLVKLGTGYLLKDDGSPVVL 822

Query: 680 NV 681
           N+
Sbjct: 823 NL 824


>gi|323948674|gb|EGB44579.1| hypothetical protein ERKG_04897 [Escherichia coli H252]
          Length = 837

 Score =  216 bits (550), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 87/542 (16%), Positives = 184/542 (33%), Gaps = 48/542 (8%)

Query: 171 FQRVQSITDHINSL--PIDLRLKQKLLSEAKEKLNTNQIIGAHARDPRVFENFMRAF--- 225
            Q + ++++ IN    P D       +    E+L  +      A +P   +    A    
Sbjct: 300 RQGIDTVSEIINRWAPPTDKNDTMSYIKAVCEQLGVSADEPLDASNPDTLKALCAAIIHH 359

Query: 226 YKKGHPPKDSTSLSDVSDSARERSLEVVEDVSKAIGLAGWDRLDDTKRRRLLEHLSSRDN 285
                P  D    + V  SA     ++     +  G+A +D L ++ +  +L    +   
Sbjct: 360 ENGSQPYSDQQLTAGV--SAALGLSQLPTKNKRYTGVAWFDALSESDQASVLRQTDALAR 417

Query: 286 ALNTKLRKETQAQARRIDAQLNHGITVKPSELIPLEDYTQAYGVEQGTELYNLQQFKSVA 345
               + +    ++ R   A    GI          +D+  AYGV +G   Y   +   +A
Sbjct: 418 QQQAEYKTMLDSRVRDATAAYMRGIEFPNPP--GEDDFIAAYGVREGNLRYTEFKNTQIA 475

Query: 346 APDVARIKLMSTFDAKKFLQKIDDEYISNPSLSLASTMMATKYKEILEKSHRQSMQELNQ 405
              +   + M T     +++++  +         A+        + +  +  Q +++   
Sbjct: 476 GQYIGSFRNMPTSSITAYVEQLRPDTGDT-GEGYAAR---ATLYDNVVSAANQVIKQRQS 531

Query: 406 DAISWGIKYKQIDPLRFDTEESFADSLRQRAGFVKKIKDDYNLTTSHFNKTEENQLRTQL 465
           D + + +   Q  P+    +++F  S+  RA  V  +   Y    + F+K E NQ+    
Sbjct: 532 DPVQFSLASGQAKPIDMSNKDNFGQSVALRAAQVSDLAKSYGTPLTFFSKDEANQIGVFF 591

Query: 466 VKRPASESVDLIRGAYNTLSDSDKEGVRSSFAHIEDNGLSAVVR---------------- 509
              P S+    +     +      +   S+   I  N  SA V                 
Sbjct: 592 RDAPVSQQAAYLDTIRQSTGGG--QVYMSALQQISANAPSAAVAGILMDKPGGILAEKNW 649

Query: 510 LSSEFSDDAKNAAMVILSGMKHQKDTETRYNTDHKSNKFDSLYDSYINTPLTKLEQSTAG 569
            + + S   + AA  IL+G   +K T+        +       D+ +    + + +    
Sbjct: 650 FNPDVSVSPETAAQTILAGAAARKGTD-------DAKGIPMPKDADLRLEFSDMVKDAFA 702

Query: 570 GNFNKDK---EAIKLYLLGSMKDSGNYT--LNRVRVSDAMQIVLGNTPVNINESMLMPPR 624
           G+        E  K Y  G M   G  +  ++      A+ +  G          ++ P 
Sbjct: 703 GDAQGASMAYEIAKDYYAGVMAKKGVVSGEIDNDVWKQAVNVATGGVHDYNGMGNVLLPW 762

Query: 625 GMSKTDFEDRLWYATKD-----TGEYDPYTIKYMNVGSGKYMIIKNGNPKVDKEGKTIII 679
           GMS   F+ ++  A  +       +  P      + G  +Y++       +  +G  +++
Sbjct: 763 GMSAEQFDKQVNQAWNEQVVGSGIKTPPGQYGLQSYGDSQYLVKLGTGYLLKDDGSPVVL 822

Query: 680 NV 681
           N+
Sbjct: 823 NL 824


>gi|117624701|ref|YP_853614.1| hypothetical protein APECO1_4052 [Escherichia coli APEC O1]
 gi|115513825|gb|ABJ01900.1| conserved hypothetical protein [Escherichia coli APEC O1]
          Length = 837

 Score =  216 bits (550), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 87/542 (16%), Positives = 184/542 (33%), Gaps = 48/542 (8%)

Query: 171 FQRVQSITDHINSL--PIDLRLKQKLLSEAKEKLNTNQIIGAHARDPRVFENFMRAF--- 225
            Q + ++++ IN    P D       +    E+L  +      A +P   +    A    
Sbjct: 300 RQGIDTVSEIINRWAPPTDKNDTMSYIKAVCEQLGVSADEPLDASNPDTLKALCAAIIHH 359

Query: 226 YKKGHPPKDSTSLSDVSDSARERSLEVVEDVSKAIGLAGWDRLDDTKRRRLLEHLSSRDN 285
                P  D    + V  SA     ++     +  G+A +D L ++ +  +L    +   
Sbjct: 360 ENGSQPYSDQQLTAGV--SAALGLSQLPTKNKRYTGVAWFDALSESDQASVLRQTDALAR 417

Query: 286 ALNTKLRKETQAQARRIDAQLNHGITVKPSELIPLEDYTQAYGVEQGTELYNLQQFKSVA 345
               + +    ++ R   A    GI          +D+  AYGV +G   Y   +   +A
Sbjct: 418 QQQAEYKTMLDSRVRDATAAYMRGIEFPNPP--GEDDFIAAYGVREGNLRYTEFKNTQIA 475

Query: 346 APDVARIKLMSTFDAKKFLQKIDDEYISNPSLSLASTMMATKYKEILEKSHRQSMQELNQ 405
              +   + M T     +++++  +         A+        + +  +  Q +++   
Sbjct: 476 GQYIGSFRNMPTSSITAYVEQLRPDTGDT-GEGYAAR---ATLYDNVVSAANQVIKQRQS 531

Query: 406 DAISWGIKYKQIDPLRFDTEESFADSLRQRAGFVKKIKDDYNLTTSHFNKTEENQLRTQL 465
           D + + +   Q  P+    +++F  S+  RA  V  +   Y    + F+K E NQ+    
Sbjct: 532 DPVQFSLASGQAKPIDMSNKDNFGQSVALRAAQVSDLAKSYGTPLTFFSKDEANQIGVFF 591

Query: 466 VKRPASESVDLIRGAYNTLSDSDKEGVRSSFAHIEDNGLSAVVR---------------- 509
              P S+    +     +      +   S+   I  N  SA V                 
Sbjct: 592 RDAPVSQQAAYLDTIRQSTGGG--QVYMSALQQISANAPSAAVAGILMDKPGGILAEKNW 649

Query: 510 LSSEFSDDAKNAAMVILSGMKHQKDTETRYNTDHKSNKFDSLYDSYINTPLTKLEQSTAG 569
            + + S   + AA  IL+G   +K T+        +       D+ +    + + +    
Sbjct: 650 FNPDVSVSPETAAQTILAGAAARKGTD-------DAKGIPMPKDADLRLEFSDMVKDAFA 702

Query: 570 GNFNKDK---EAIKLYLLGSMKDSGNYT--LNRVRVSDAMQIVLGNTPVNINESMLMPPR 624
           G+        E  K Y  G M   G  +  ++      A+ +  G          ++ P 
Sbjct: 703 GDAQGASMAYEIAKDYYAGVMAKKGVVSGEIDNDVWKQAVNVATGGVHDYNGMGNVLLPW 762

Query: 625 GMSKTDFEDRLWYATKD-----TGEYDPYTIKYMNVGSGKYMIIKNGNPKVDKEGKTIII 679
           GMS   F+ ++  A  +       +  P      + G  +Y++       +  +G  +++
Sbjct: 763 GMSAEQFDKQVNQAWNEQVVGSGIKTPPGQYGLQSYGDSQYLVKLGTGYLLKDDGSPVVL 822

Query: 680 NV 681
           N+
Sbjct: 823 NL 824


>gi|324008549|gb|EGB77768.1| hypothetical protein HMPREF9532_01736 [Escherichia coli MS 57-2]
          Length = 837

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 86/542 (15%), Positives = 184/542 (33%), Gaps = 48/542 (8%)

Query: 171 FQRVQSITDHINSL--PIDLRLKQKLLSEAKEKLNTNQIIGAHARDPRVFENFMRAF--- 225
            Q + ++++ IN    P D       +    E+L  +      A +P   +    A    
Sbjct: 300 RQGIDTVSEIINRWAPPTDKNDTMSYIKAVCEQLGVSADEPLDASNPDTLKALCAAIIHH 359

Query: 226 YKKGHPPKDSTSLSDVSDSARERSLEVVEDVSKAIGLAGWDRLDDTKRRRLLEHLSSRDN 285
                P  D    + V  SA     ++     +  G+A +D L ++ +  +L    +   
Sbjct: 360 ENGSQPYSDQQLTAGV--SAALGLSQLPTKNKRYTGVAWFDALSESDQASVLRQTDALAR 417

Query: 286 ALNTKLRKETQAQARRIDAQLNHGITVKPSELIPLEDYTQAYGVEQGTELYNLQQFKSVA 345
               + +    ++ R   A    G+          +D+  AYGV +G   Y   +   +A
Sbjct: 418 QQQAEYKTMLDSRVRDATAAYMRGVEFPNPP--GEDDFIAAYGVREGNLRYTEFKNTQIA 475

Query: 346 APDVARIKLMSTFDAKKFLQKIDDEYISNPSLSLASTMMATKYKEILEKSHRQSMQELNQ 405
              +   + M T     +++++  +         A+        + +  +  Q +++   
Sbjct: 476 GQYIGSFRNMPTSSITAYVEQLRPDT-GETGEGYAAR---AALYDNVVSAANQVIKQRQS 531

Query: 406 DAISWGIKYKQIDPLRFDTEESFADSLRQRAGFVKKIKDDYNLTTSHFNKTEENQLRTQL 465
           D + + +   Q  P+    +++F  S+  RA  V  +   Y    + F+K E NQ+    
Sbjct: 532 DPVQFSLASGQAKPIDMSNKDNFGQSVALRAAQVSDLAKSYGTPLTFFSKDEANQIGVFF 591

Query: 466 VKRPASESVDLIRGAYNTLSDSDKEGVRSSFAHIEDNGLSAVVR---------------- 509
              P S+    +     +      +   S+   I  N  SA V                 
Sbjct: 592 RDAPVSQQAAYLDTIRQSTGGG--QVYMSALQQISANAPSAAVAGILMDKPGGILAEKNW 649

Query: 510 LSSEFSDDAKNAAMVILSGMKHQKDTETRYNTDHKSNKFDSLYDSYINTPLTKLEQSTAG 569
            + + S   + AA  IL+G   +K T+        +       D+ +    + + +    
Sbjct: 650 FNPDVSVSPETAAQTILAGAAARKGTD-------DAKGIPMPKDADLRLEFSDMVKDAFA 702

Query: 570 GNFNKDK---EAIKLYLLGSMKDSGNYT--LNRVRVSDAMQIVLGNTPVNINESMLMPPR 624
           G+        E  K Y  G M   G  +  ++      A+ +  G          ++ P 
Sbjct: 703 GDAQGASMAYEIAKDYYAGVMAKKGVVSGEIDNDVWKQAVNVATGGVHDYNGMGNVLLPW 762

Query: 625 GMSKTDFEDRLWYATKD-----TGEYDPYTIKYMNVGSGKYMIIKNGNPKVDKEGKTIII 679
           GMS   F+ ++  A  +       +  P      + G  +Y++       +  +G  +++
Sbjct: 763 GMSAEQFDKQVNQAWNEQVVGSGIKTPPGQYGLQSYGDSQYLVKLGTGYLLKDDGSPVVL 822

Query: 680 NV 681
           N+
Sbjct: 823 NL 824


>gi|331648165|ref|ZP_08349255.1| hypothetical protein ECIG_04091 [Escherichia coli M605]
 gi|331043025|gb|EGI15165.1| hypothetical protein ECIG_04091 [Escherichia coli M605]
          Length = 837

 Score =  213 bits (543), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 85/542 (15%), Positives = 178/542 (32%), Gaps = 48/542 (8%)

Query: 171 FQRVQSITDHINSL--PIDLRLKQKLLSEAKEKLNTNQIIGAHARDPRVFENFMRAF--- 225
            Q + ++++ IN    P D       +    E+L  +      A +P   +    A    
Sbjct: 300 RQGIDTVSEIINRWAPPTDKNDTMSYIKAVCEQLGVSADDPLDASNPDTLKALCAAIIHH 359

Query: 226 YKKGHPPKDSTSLSDVSDSARERSLEVVEDVSKAIGLAGWDRLDDTKRRRLLEHLSSRDN 285
                P  D    + V  SA      +  +  +  G A +D      +   +        
Sbjct: 360 ENGNQPYSDQQLTAGV--SAALGLSTIPTNTKRYTGNAAFDAASPEAQASFMRQADQLRR 417

Query: 286 ALNTKLRKETQAQARRIDAQLNHGITVKPSELIPLEDYTQAYGVEQGTELYNLQQFKSVA 345
               + +    +Q R   A    G+          +D+  AYGV +G   Y   +   +A
Sbjct: 418 QQQAEYKTMIDSQVRDATAAYMRGVEFPNPP--GEDDFIAAYGVREGNLRYTEFRNTQIA 475

Query: 346 APDVARIKLMSTFDAKKFLQKIDDEYISNPSLSLASTMMATKYKEILEKSHRQSMQELNQ 405
              +   + M T     +++++  +         A+        + +  +  Q +++   
Sbjct: 476 GQYIGSFRNMPTSSITAYVEQLRPDT-GETGEGYAAR---AALYDNVVSAANQVIKQRQS 531

Query: 406 DAISWGIKYKQIDPLRFDTEESFADSLRQRAGFVKKIKDDYNLTTSHFNKTEENQLRTQL 465
           D + + +   Q  P+    +++F  S+  RA  V  +   Y    + F+K E NQ+    
Sbjct: 532 DPVQFSLASGQAKPIDMSNKDNFGQSVALRAAQVSDLAKSYGTPLTFFSKDEANQIGVFF 591

Query: 466 VKRPASESVDLIRGAYNTLSDSDKEGVRSSFAHIEDNGLSAVVR---------------- 509
              P S+    +     +      +   S+   I  N  SA V                 
Sbjct: 592 RDAPVSQQAAYLDTIRQSTGGG--QVYMSALQQISANAPSAAVAGILMDKPGGILAEKNW 649

Query: 510 LSSEFSDDAKNAAMVILSGMKHQKDTETRYNTDHKSNKFDSLYDSYINTPLTKLEQSTAG 569
            + + S   + AA  IL+G   +K T+        +       D+ +    + + +    
Sbjct: 650 FNPDVSVSPETAAQTILAGAAARKGTD-------DAKGIPMPKDADLRLEFSDMVKDAFA 702

Query: 570 GNFNKDK---EAIKLYLLGSMKDSGNYT--LNRVRVSDAMQIVLGNTPVNINESMLMPPR 624
           G+        E  K Y  G M   G  +  ++      A+ +  G          ++ P 
Sbjct: 703 GDAQGASMAYEIAKDYYAGVMAKKGVVSGEIDNDVWKQAVNVATGGVHDYNGMGNVLLPW 762

Query: 625 GMSKTDFEDRLWYATKD-----TGEYDPYTIKYMNVGSGKYMIIKNGNPKVDKEGKTIII 679
           GMS   F+ ++  A  +       +  P      + G  +Y++       +  +G  +++
Sbjct: 763 GMSAEQFDKQINQAWNEQVVGSGIKTPPGQYGLQSYGDSQYLVKLGTGYLLKDDGSPVVL 822

Query: 680 NV 681
           N+
Sbjct: 823 NL 824


>gi|215487810|ref|YP_002330241.1| hypothetical protein E2348C_2743 [Escherichia coli O127:H6 str.
           E2348/69]
 gi|215265882|emb|CAS10291.1| predicted protein [Escherichia coli O127:H6 str. E2348/69]
          Length = 836

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 87/541 (16%), Positives = 173/541 (31%), Gaps = 46/541 (8%)

Query: 171 FQRVQSITDHINSL--PIDLRLKQKLLSEAKEKLNTNQIIGAHARDPRVFENFMRAF--Y 226
            Q + ++ D IN    P D       +     +L         A +P   +    +   +
Sbjct: 299 RQGIDTVNDIINRWAPPSDNNNTDAYIQAVCAQLGVTPDQPLDASNPDTLKALCASIIQH 358

Query: 227 KKGHPPKDSTSLSDVSDSARERSLEVVEDVSKAIGLAGWDRLDDTKRRRLLEHLSSRDNA 286
           + G  P     L+    SA     ++     +  G A +D      +   L         
Sbjct: 359 ENGSQPYSDQQLATGV-SAAIGLSQLPTSTKRYTGNAAFDAASPEAQATFLRQADQIRKQ 417

Query: 287 LNTKLRKETQAQARRIDAQLNHGITVKPSELIPLEDYTQAYGVEQGTELYNLQQFKSVAA 346
              + R    ++ R   A    G+           D+  AYGV +G   Y   +   +A 
Sbjct: 418 QQAEYRTNIDSRVRDASAAYMRGV--DFPNAPTQNDFLAAYGVREGNLRYTEFRNTQIAG 475

Query: 347 PDVARIKLMSTFDAKKFLQKIDDEYISNPSLSLASTMMATKYKEILEKSHRQSMQELNQD 406
             +   + M T   +  ++ +  +         A+   A  Y  ++  +    + +   D
Sbjct: 476 QYIGSFRNMPTSSIQAAVENLKPDT-GETGEGYAAR--AQTYDAVV-SAASTVLAQRKAD 531

Query: 407 AISWGIKYKQIDPLRFDTEESFADSLRQRAGFVKKIKDDYNLTTSHFNKTEENQLRTQLV 466
            I + +   Q  P+    + +F  ++  RA     +   Y    + F+K E NQ+     
Sbjct: 532 PIQFSLSSGQTKPIDMTNQNNFGQTISLRASQAVDLAKSYGTPLTFFSKEEANQIGAFFR 591

Query: 467 KRPASESVDLIRGAYNTLSDSDKEGVRSSFAHIEDNGLSAVVR----------------L 510
             P S+    +     +      +   S+   I  N  SA V                  
Sbjct: 592 DAPVSQQTAYLDTIRQSTGGG--QVYMSALQQISTNAPSAAVAGILMDKPGGVVAEKNWF 649

Query: 511 SSEFSDDAKNAAMVILSGMKHQKDTETRYNTDHKSNKFDSLYDSYINTPLTKLEQSTAGG 570
           + + S   + AA  ILSG   +K T+        +       D+ +    + + +    G
Sbjct: 650 NPDVSVSPETAAQTILSGAAARKGTD-------DAKGIPMPKDNDLRLEFSDMVKDAFAG 702

Query: 571 NFNKDK---EAIKLYLLGSMKDSGNYT--LNRVRVSDAMQIVLGNTPVNINESMLMPPRG 625
           +        E  K Y  G M   G  +  ++      A+ +  G          ++ P G
Sbjct: 703 DAQGASMAYEIAKDYYAGVMAKKGVVSGEVDSDTWKQAVNVATGGVHDYNGMGSVLLPWG 762

Query: 626 MSKTDFEDRLWYATKD-----TGEYDPYTIKYMNVGSGKYMIIKNGNPKVDKEGKTIIIN 680
           MS   F+ ++  A K        +  P      + G  +Y++       +  +G  ++I+
Sbjct: 763 MSAEQFDKQVDQAWKTQVTGAGIKAPPGQYGLQSYGDSQYLVKLGTGYLLKDDGTPVVID 822

Query: 681 V 681
           +
Sbjct: 823 L 823


>gi|320175034|gb|EFW50147.1| putative bacteriophage protein [Shigella dysenteriae CDC 74-1112]
          Length = 837

 Score =  212 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 84/542 (15%), Positives = 178/542 (32%), Gaps = 48/542 (8%)

Query: 171 FQRVQSITDHINSL--PIDLRLKQKLLSEAKEKLNTNQIIGAHARDPRVFENFMRAF--- 225
            Q + ++++ IN    P D       +    E+L  +      A +P   +    A    
Sbjct: 300 RQGIDTVSEIINRWAPPTDKNDTMSYIKAVCEQLGVSADDPLDASNPDTLKALCAAIIHH 359

Query: 226 YKKGHPPKDSTSLSDVSDSARERSLEVVEDVSKAIGLAGWDRLDDTKRRRLLEHLSSRDN 285
                P  D    + V  SA      +  +  +  G A +D      +   +        
Sbjct: 360 ENGSQPYSDQQLTAGV--SAALGLSTIPTNTKRYTGNAAFDAASPEAQASFMRQADQLRR 417

Query: 286 ALNTKLRKETQAQARRIDAQLNHGITVKPSELIPLEDYTQAYGVEQGTELYNLQQFKSVA 345
               + +    ++ R   A    G+          +D+  AYGV +G   Y   +   +A
Sbjct: 418 QQQAEYKTIIDSKVRDATAAYMRGVEFPNPP--GEDDFIAAYGVREGNLRYTEFRNTQIA 475

Query: 346 APDVARIKLMSTFDAKKFLQKIDDEYISNPSLSLASTMMATKYKEILEKSHRQSMQELNQ 405
              +   + M T     +++++  +         AS        + +  +  Q +++   
Sbjct: 476 GQYIGSFRNMPTSSITAYVEQLRPDT-GETGEGYASR---AALYDNVVSAANQVIKQRQS 531

Query: 406 DAISWGIKYKQIDPLRFDTEESFADSLRQRAGFVKKIKDDYNLTTSHFNKTEENQLRTQL 465
           D + + +   Q  P+    +++F  S+  RA  +  +   Y    + F+K E NQ+    
Sbjct: 532 DPVQFSLASGQAKPIDMSNKDNFGQSVALRAAQISDLAKSYGTPLTFFSKDEANQIGVFF 591

Query: 466 VKRPASESVDLIRGAYNTLSDSDKEGVRSSFAHIEDNGLSAVVR---------------- 509
              P S+    +     +      +   S+   I  N  SA V                 
Sbjct: 592 RDAPVSQQAAYLDTIRQSTGGG--QVYMSALQQISANAPSAAVAGILMDKPGGILAETNW 649

Query: 510 LSSEFSDDAKNAAMVILSGMKHQKDTETRYNTDHKSNKFDSLYDSYINTPLTKLEQSTAG 569
            + + S   + AA  IL+G   +K T+        +       D+ +    + + +    
Sbjct: 650 FNPDVSVSPETAAQTILAGAAARKGTD-------DAKGIPMPKDADLRLEFSDMVKDAFA 702

Query: 570 GNFNKDK---EAIKLYLLGSMKDSGNYT--LNRVRVSDAMQIVLGNTPVNINESMLMPPR 624
           G+        E  K Y  G M   G  +  ++      A+ +  G          ++ P 
Sbjct: 703 GDAQGASMAYEIAKDYYAGVMAKKGVISGEIDTDIWKQAVNVATGGVHDYNGMGNVLLPW 762

Query: 625 GMSKTDFEDRLWYATKD-----TGEYDPYTIKYMNVGSGKYMIIKNGNPKVDKEGKTIII 679
           GMS   F+ ++  A  +       +  P      + G  +Y++       +  +G  +++
Sbjct: 763 GMSAEQFDKQVNQAWNEQVVGTGIKTPPGQYGLQSYGDSQYLVKLGTGYLLKDDGSPVVL 822

Query: 680 NV 681
           N+
Sbjct: 823 NL 824


>gi|300898438|ref|ZP_07116779.1| conserved hypothetical protein [Escherichia coli MS 198-1]
 gi|300357905|gb|EFJ73775.1| conserved hypothetical protein [Escherichia coli MS 198-1]
          Length = 837

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 84/542 (15%), Positives = 183/542 (33%), Gaps = 48/542 (8%)

Query: 171 FQRVQSITDHINSL--PIDLRLKQKLLSEAKEKLNTNQIIGAHARDPRVFENFMRAF--- 225
            Q + ++++ IN    P D       +    E+L  +      A +P   +    A    
Sbjct: 300 RQGIDTVSEIINRWAPPTDKNDTMSYIKAVCEQLGVSADEPLDASNPDTLKALCAAIIHH 359

Query: 226 YKKGHPPKDSTSLSDVSDSARERSLEVVEDVSKAIGLAGWDRLDDTKRRRLLEHLSSRDN 285
                P  D    + V  SA     ++     +  G+A +D L ++ +  +L    +   
Sbjct: 360 ENGSQPYSDQQLTAGV--SAALGLSQLPTKNKRYTGVAWFDALSESDQASVLRQTDALAR 417

Query: 286 ALNTKLRKETQAQARRIDAQLNHGITVKPSELIPLEDYTQAYGVEQGTELYNLQQFKSVA 345
               + +    ++ R   A    G+          +D+  AYGV +G   Y   +   +A
Sbjct: 418 QQQAEYKTMLDSRVRDATAAYMRGVEFPNPP--GEDDFIAAYGVREGNLRYTEFKNTQIA 475

Query: 346 APDVARIKLMSTFDAKKFLQKIDDEYISNPSLSLASTMMATKYKEILEKSHRQSMQELNQ 405
              +   + M T     +++++  +         A+        + +  +  Q +++   
Sbjct: 476 GQYIGSFRNMPTSSITAYVEQLRPDTGDT-GEGYAAR---AALYDNVVSAANQVIKQRQS 531

Query: 406 DAISWGIKYKQIDPLRFDTEESFADSLRQRAGFVKKIKDDYNLTTSHFNKTEENQLRTQL 465
           D + + +   Q  P+    +++F  S+  RA  V  +   Y    + F+K E NQ+    
Sbjct: 532 DPVQFSLASGQAKPIDMSNKDNFGQSVALRAAQVSDLAKSYGTPLTFFSKDEANQIGVFF 591

Query: 466 VKRPASESVDLIRGAYNTLSDSDKEGVRSSFAHIEDNGLSAVVR---------------- 509
              P S+    +     +      +   S+   I  N  SA V                 
Sbjct: 592 RDAPVSQQAAYLDTIRQSTGGG--QVYMSALQQISANAPSAAVAGILMDKPGGILAEKNW 649

Query: 510 LSSEFSDDAKNAAMVILSGMKHQKDTETRYNTDHKSNKFDSLYDSYINTPLTKLEQSTAG 569
            + + S   + AA  IL+G   +K T+        +       D+ +    + + +    
Sbjct: 650 FNPDVSVSPETAAQTILAGAAARKGTD-------DAKGIPMPKDADLRIEFSDMVKDAFA 702

Query: 570 GNFNKDK---EAIKLYLLGSMKDSGNYT--LNRVRVSDAMQIVLGNTPVNINESMLMPPR 624
           G+        E  K Y  G M   G  +  ++      A+ +  G          ++ P 
Sbjct: 703 GDAQGASMAYEIAKDYYAGVMAKKGVVSGEIDNDIWKQAVNVATGGVHDYNGMGNVLLPW 762

Query: 625 GMSKTDFEDRLWYATKD-----TGEYDPYTIKYMNVGSGKYMIIKNGNPKVDKEGKTIII 679
           GMS   F+ ++  A  +       +         + G  +Y++       +  +G  +++
Sbjct: 763 GMSAEQFDKQVNQAWNEQVVGTGIKTPLGQYGLQSYGDSQYLVKLGTGYLLKDDGSPVVL 822

Query: 680 NV 681
           ++
Sbjct: 823 DL 824


>gi|332344343|gb|AEE57677.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 837

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 85/542 (15%), Positives = 177/542 (32%), Gaps = 48/542 (8%)

Query: 171 FQRVQSITDHINSL--PIDLRLKQKLLSEAKEKLNTNQIIGAHARDPRVFENFMRAF--- 225
            Q + ++++ IN    P D       +    E+L  +      A +P   +    A    
Sbjct: 300 RQGIDTVSEIINRWAPPTDKNDTMSYIKAVCEQLGVSADEPLDASNPDTLKALCAAIIHH 359

Query: 226 YKKGHPPKDSTSLSDVSDSARERSLEVVEDVSKAIGLAGWDRLDDTKRRRLLEHLSSRDN 285
                P  D    + V  SA      +  +  +  G A +D      +   +        
Sbjct: 360 ENGSQPYSDQQLTAGV--SAALGLSTIPTNTKRYTGNAAFDAASPEAQASFMRQADQLRR 417

Query: 286 ALNTKLRKETQAQARRIDAQLNHGITVKPSELIPLEDYTQAYGVEQGTELYNLQQFKSVA 345
               + +    +Q R   A    G+           D+  AYGV +G   Y   +   +A
Sbjct: 418 QQQAEYKTMIDSQVRDATAAYMRGVEFPNPP--GEADFIAAYGVREGNLRYTEFRNTQIA 475

Query: 346 APDVARIKLMSTFDAKKFLQKIDDEYISNPSLSLASTMMATKYKEILEKSHRQSMQELNQ 405
              +   + M T     +++++  +         A+        + +  +  Q +++   
Sbjct: 476 GQYIGSFRNMPTSSITAYVEQLRPDT-GETGEGYAAR---AALYDNVVSAASQVIKQRQA 531

Query: 406 DAISWGIKYKQIDPLRFDTEESFADSLRQRAGFVKKIKDDYNLTTSHFNKTEENQLRTQL 465
           D + + +   Q  P+    +++F  S+  RA  V  +   Y    + F+K E NQ+    
Sbjct: 532 DPVQFSLAAGQAKPIDMSNKDNFGQSVALRAAQVSDLAKSYGTPLTFFSKDEANQIGVFF 591

Query: 466 VKRPASESVDLIRGAYNTLSDSDKEGVRSSFAHIEDNGLSAVVR---------------- 509
              P S+    +     +      +   S+   I  N  SA V                 
Sbjct: 592 RDAPVSQQAAYLDTIRQSTGGG--QVYMSALQQISANAPSAAVAGILMDKPGGILAEKNW 649

Query: 510 LSSEFSDDAKNAAMVILSGMKHQKDTETRYNTDHKSNKFDSLYDSYINTPLTKLEQSTAG 569
            + + S   + AA  IL+G   +K T+        +       D+ +    + + +    
Sbjct: 650 FNPDVSVSPETAAQTILAGAAARKGTD-------DAKGIPMPKDADLRFEFSDMVKDAFA 702

Query: 570 GNFNKDK---EAIKLYLLGSMKDSGNYT--LNRVRVSDAMQIVLGNTPVNINESMLMPPR 624
           G+        E  K Y  G M   G  +  ++      A+ +  G          ++ P 
Sbjct: 703 GDAQGASMAYEIAKDYYAGVMAKKGVVSGEIDNDVWKQAVNVATGGVHDYNGMGNVLLPW 762

Query: 625 GMSKTDFEDRLWYATKD-----TGEYDPYTIKYMNVGSGKYMIIKNGNPKVDKEGKTIII 679
           GMS   F+ ++  A  +       +  P      + G  +Y++       +  +G  +++
Sbjct: 763 GMSAEQFDKQVNQAWNEQVVGSGIKTPPGQYGLQSYGDSQYLVKLGTGYLLKDDGSPVVL 822

Query: 680 NV 681
           N+
Sbjct: 823 NL 824


>gi|298381707|ref|ZP_06991306.1| minor structural protein [Escherichia coli FVEC1302]
 gi|298279149|gb|EFI20663.1| minor structural protein [Escherichia coli FVEC1302]
          Length = 837

 Score =  212 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 85/542 (15%), Positives = 177/542 (32%), Gaps = 48/542 (8%)

Query: 171 FQRVQSITDHINSL--PIDLRLKQKLLSEAKEKLNTNQIIGAHARDPRVFENFMRAF--- 225
            Q + ++++ IN    P D       +    E+L  +      A +P   +    A    
Sbjct: 300 RQGIDTVSEIINRWAPPTDKNDTMSYIKAVCEQLGVSADEPLDASNPDTLKALCAAIIHH 359

Query: 226 YKKGHPPKDSTSLSDVSDSARERSLEVVEDVSKAIGLAGWDRLDDTKRRRLLEHLSSRDN 285
                P  D    + V  SA      +  +  +  G A +D      +   +        
Sbjct: 360 ENGSQPYSDQQLTAGV--SAALGLSTIPTNTKRYTGNAAFDAASPEAQASFMRQADQLRR 417

Query: 286 ALNTKLRKETQAQARRIDAQLNHGITVKPSELIPLEDYTQAYGVEQGTELYNLQQFKSVA 345
               + +    +Q R   A    G+           D+  AYGV +G   Y   +   +A
Sbjct: 418 QQQAEYKTMIDSQVRDATAAYMRGVEFPNPP--GEADFIAAYGVREGNLRYTEFRNTQIA 475

Query: 346 APDVARIKLMSTFDAKKFLQKIDDEYISNPSLSLASTMMATKYKEILEKSHRQSMQELNQ 405
              +   + M T     +++++  +         A+        + +  +  Q +++   
Sbjct: 476 GQYIGSFRNMPTSSITAYVEQLRPDT-GETGEGYAAR---AALYDNVVSAASQVIKQRQA 531

Query: 406 DAISWGIKYKQIDPLRFDTEESFADSLRQRAGFVKKIKDDYNLTTSHFNKTEENQLRTQL 465
           D + + +   Q  P+    +++F  S+  RA  V  +   Y    + F+K E NQ+    
Sbjct: 532 DPVQFSLAAGQAKPIDMSNKDNFGQSVALRATQVSDLAKSYGTPLTFFSKDEANQIGVFF 591

Query: 466 VKRPASESVDLIRGAYNTLSDSDKEGVRSSFAHIEDNGLSAVVR---------------- 509
              P S+    +     +      +   S+   I  N  SA V                 
Sbjct: 592 RDAPVSQQAAYLDTIRQSTGGG--QVYMSALQQISANAPSAAVAGILMDKPGGILAEKNW 649

Query: 510 LSSEFSDDAKNAAMVILSGMKHQKDTETRYNTDHKSNKFDSLYDSYINTPLTKLEQSTAG 569
            + + S   + AA  IL+G   +K T+        +       D+ +    + + +    
Sbjct: 650 FNPDVSVSPETAAQTILAGAAARKGTD-------DAKGIPMPKDADLRLEFSDMVKDAFA 702

Query: 570 GNFNKDK---EAIKLYLLGSMKDSGNYT--LNRVRVSDAMQIVLGNTPVNINESMLMPPR 624
           G+        E  K Y  G M   G  +  ++      A+ +  G          ++ P 
Sbjct: 703 GDAQGASMAYEIAKDYYAGVMAKKGVVSGEIDNDVWKQAVNVATGGVHDYNGMGNVLLPW 762

Query: 625 GMSKTDFEDRLWYATKD-----TGEYDPYTIKYMNVGSGKYMIIKNGNPKVDKEGKTIII 679
           GMS   F+ ++  A  +       +  P      + G  +Y++       +  +G  +++
Sbjct: 763 GMSAEQFDKQVNQAWNEQVVGSGIKTPPGQYGLQSYGDSQYLVKLGTGYLLKDDGSPVVL 822

Query: 680 NV 681
           N+
Sbjct: 823 NL 824


>gi|309702801|emb|CBJ02132.1| hypothetical phage protein [Escherichia coli ETEC H10407]
          Length = 836

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 87/541 (16%), Positives = 175/541 (32%), Gaps = 46/541 (8%)

Query: 171 FQRVQSITDHINSL--PIDLRLKQKLLSEAKEKLNTNQIIGAHARDPRVFENFMRAF--Y 226
            Q + ++ D IN    P D       +     +L         A +P   +    +   +
Sbjct: 299 RQGIDTVNDIINRWAPPSDNNNTDTYIQAVCAQLGVTPDQPLDASNPDTLKALCASIIQH 358

Query: 227 KKGHPPKDSTSLSDVSDSARERSLEVVEDVSKAIGLAGWDRLDDTKRRRLLEHLSSRDNA 286
           + G  P     L+    SA     ++     +  G A +D      +   L         
Sbjct: 359 ENGSQPYSDQQLATGV-SAAIGLSQLPTSTKRYTGNAAFDAASPEAQATFLRQADQIRKQ 417

Query: 287 LNTKLRKETQAQARRIDAQLNHGITVKPSELIPLEDYTQAYGVEQGTELYNLQQFKSVAA 346
              + R    ++ R   A    G+           D+  AYGV +G   Y   +   +A 
Sbjct: 418 QQAEYRTNIDSRVRDASAAYMRGV--DFPNAPTQNDFMAAYGVREGNLRYTEFRNTQIAG 475

Query: 347 PDVARIKLMSTFDAKKFLQKIDDEYISNPSLSLASTMMATKYKEILEKSHRQSMQELNQD 406
             +   + M T   +  ++ +  +         A+   A  Y  ++  +    + +   D
Sbjct: 476 QYIGSFRNMPTSSIQAAVENLKPDT-GETGEGYAAR--AQTYDAVV-SAASTVLAQRKAD 531

Query: 407 AISWGIKYKQIDPLRFDTEESFADSLRQRAGFVKKIKDDYNLTTSHFNKTEENQLRTQLV 466
            I + +   Q  P+    + +F+ ++  RA    ++   Y    + F+K E NQ+     
Sbjct: 532 PIQFSLSSGQTKPIDMTNQNNFSQTIALRASQAAELAKSYGTPLTFFSKDEANQIGAFFR 591

Query: 467 KRPASESVDLIRGAYNTLSDSDKEGVRSSFAHIEDNGLSAVVR----------------L 510
             P S+    +     +      +   S+   I  N  SA V                  
Sbjct: 592 DAPVSQQSAYLDTIRQSTGGG--QVYMSALQQISTNAPSAAVAGILMDKPGGVVAEKNWF 649

Query: 511 SSEFSDDAKNAAMVILSGMKHQKDTETRYNTDHKSNKFDSLYDSYINTPLTKLEQSTAGG 570
           + + S   ++AA  ILSG   +K T                 D+ +    + + +    G
Sbjct: 650 NPDVSVSPESAAQTILSGAAARKGT-------GDVKGIPMPKDNDLRLEFSDMVKDAFAG 702

Query: 571 NFNKDK---EAIKLYLLGSMKDSGNYT--LNRVRVSDAMQIVLGNTPVNINESMLMPPRG 625
           + +      E  K Y  G M   G  +  ++      A+ +  G          ++ P G
Sbjct: 703 DAHGASMAYEIAKDYYAGVMAKKGVVSGEIDSDTWKQAVNVATGGVHDYNGMGSVLLPWG 762

Query: 626 MSKTDFEDRLWYATKD-----TGEYDPYTIKYMNVGSGKYMIIKNGNPKVDKEGKTIIIN 680
           MS   F+ ++  A K        +  P      + G  +Y++       +  +G  ++I+
Sbjct: 763 MSAEQFDKQVDQAWKTQVTDAGIKAPPGQYGLQSYGDSQYLVKLGTGYLLKDDGTPVVID 822

Query: 681 V 681
           +
Sbjct: 823 L 823


>gi|323156122|gb|EFZ42281.1| prophage MuMc02, structural protein P5 [Escherichia coli EPECa14]
          Length = 837

 Score =  210 bits (534), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 84/542 (15%), Positives = 177/542 (32%), Gaps = 48/542 (8%)

Query: 171 FQRVQSITDHINSL--PIDLRLKQKLLSEAKEKLNTNQIIGAHARDPRVFENFMRAF--- 225
            Q + ++++ IN    P D       +    E+L  +      A +P   +    A    
Sbjct: 300 RQGIDTVSEIINRWAPPADKNDTMSYIKAVCEQLGVSADEPLDASNPDTLKALCAAIIHH 359

Query: 226 YKKGHPPKDSTSLSDVSDSARERSLEVVEDVSKAIGLAGWDRLDDTKRRRLLEHLSSRDN 285
                P  D    + V  SA      +  +  +  G A +D      +   +        
Sbjct: 360 ENGSQPYSDQQLTAGV--SAALGLSTIPTNTKRYTGNAAFDAASPEAQASFMRQADQLRR 417

Query: 286 ALNTKLRKETQAQARRIDAQLNHGITVKPSELIPLEDYTQAYGVEQGTELYNLQQFKSVA 345
               + +    +Q R   A    G+           D+  AYGV +G   Y   +   +A
Sbjct: 418 QQQAEYKTMIDSQVRDATAAYMRGVEFPNPP--GEADFIAAYGVREGNLRYTEFRNTQIA 475

Query: 346 APDVARIKLMSTFDAKKFLQKIDDEYISNPSLSLASTMMATKYKEILEKSHRQSMQELNQ 405
              +   + M T     +++++  +         A+        + +  +  Q +++   
Sbjct: 476 GQYIGSFRNMPTSSITAYVEQLRPDT-GETGEGYAAR---AALYDNVVSAASQVIKQRQA 531

Query: 406 DAISWGIKYKQIDPLRFDTEESFADSLRQRAGFVKKIKDDYNLTTSHFNKTEENQLRTQL 465
           D + + +   Q  P+    +++F  S+  RA  V  +   Y    + F+K E NQ+    
Sbjct: 532 DPVQFSLAAGQAKPIDMSNKDNFGQSVALRAAQVSDLAKSYGTPLTFFSKDEANQIGVFF 591

Query: 466 VKRPASESVDLIRGAYNTLSDSDKEGVRSSFAHIEDNGLSAVVR---------------- 509
              P S+    +     +      +   S+   I  N  SA V                 
Sbjct: 592 RDAPVSQQAAYLDTIRQSTGGG--QVYMSALQQISANAPSAAVAGILMDKPGGILAEKNW 649

Query: 510 LSSEFSDDAKNAAMVILSGMKHQKDTETRYNTDHKSNKFDSLYDSYINTPLTKLEQSTAG 569
            + + S   + AA  IL+G   +K T+        +       D+ +    + + +    
Sbjct: 650 FNPDVSVSPETAAQTILAGAAARKGTD-------DAKGIPMPKDADLRLEFSDMVKDAFA 702

Query: 570 GNFNKDK---EAIKLYLLGSMKDSGNYT--LNRVRVSDAMQIVLGNTPVNINESMLMPPR 624
           G+        E  K Y  G M   G  +  ++      A+ +  G          ++ P 
Sbjct: 703 GDAQGASMAYEIAKDYYAGVMAKKGVVSGEIDNDIWKQAVNVATGGVHDYNGMGNVLLPW 762

Query: 625 GMSKTDFEDRLWYATKD-----TGEYDPYTIKYMNVGSGKYMIIKNGNPKVDKEGKTIII 679
           GMS   F+ ++  A  +       +  P      + G  +Y++       +  +G  +++
Sbjct: 763 GMSAEQFDKQVNQAWNEQVVGTGIKTPPGQYGLQSYGDSQYLVKLGTGYLLKDDGSPVVL 822

Query: 680 NV 681
           ++
Sbjct: 823 DL 824


>gi|327252173|gb|EGE63845.1| prophage MuMc02, structural protein P5 [Escherichia coli STEC_7v]
          Length = 837

 Score =  210 bits (534), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 84/542 (15%), Positives = 177/542 (32%), Gaps = 48/542 (8%)

Query: 171 FQRVQSITDHINSL--PIDLRLKQKLLSEAKEKLNTNQIIGAHARDPRVFENFMRAF--- 225
            Q + ++++ IN    P D       +    E+L  +      A +P   +    A    
Sbjct: 300 RQGIDTVSEIINRWAPPTDKNDTMSYIKAVCEQLGVSADEPLDASNPDTLKALCAAIIHH 359

Query: 226 YKKGHPPKDSTSLSDVSDSARERSLEVVEDVSKAIGLAGWDRLDDTKRRRLLEHLSSRDN 285
                P  D    + V  SA      +  +  +  G A +D      +   +        
Sbjct: 360 ENGSQPYSDQQLTAGV--SAALGLSTIPTNTKRYTGNAAFDAASPEAQASFMRQADQLRR 417

Query: 286 ALNTKLRKETQAQARRIDAQLNHGITVKPSELIPLEDYTQAYGVEQGTELYNLQQFKSVA 345
               + +    +Q R   A    G+           D+  AYGV +G   Y   +   +A
Sbjct: 418 QQQAEYKTMIDSQVRDATAAYMRGVEFPNPP--GEADFIAAYGVREGKLRYTEFRNTQIA 475

Query: 346 APDVARIKLMSTFDAKKFLQKIDDEYISNPSLSLASTMMATKYKEILEKSHRQSMQELNQ 405
              +   + M T     +++++  +         A+        + +  +  Q +++   
Sbjct: 476 GQYIGSFRNMPTSSITAYVEQLRPDT-GETGEGYAAR---AALYDNVVSAASQVIKQRQA 531

Query: 406 DAISWGIKYKQIDPLRFDTEESFADSLRQRAGFVKKIKDDYNLTTSHFNKTEENQLRTQL 465
           D + + +   Q  P+    +++F  S+  RA  V  +   Y    + F+K E NQ+    
Sbjct: 532 DPVQFSLAAGQAKPIDMSNKDNFGQSVALRAAQVSDLAKSYGTPLTFFSKDEANQIGVFF 591

Query: 466 VKRPASESVDLIRGAYNTLSDSDKEGVRSSFAHIEDNGLSAVVR---------------- 509
              P S+    +     +      +   S+   I  N  SA V                 
Sbjct: 592 RDAPVSQQAAYLDTIRQSTGGG--QVYMSALQQISANAPSAAVAGILMDKPGGILAEKNW 649

Query: 510 LSSEFSDDAKNAAMVILSGMKHQKDTETRYNTDHKSNKFDSLYDSYINTPLTKLEQSTAG 569
            + + S   + AA  IL+G   +K T+        +       D+ +    + + +    
Sbjct: 650 FNPDVSVSPETAAQTILAGAAARKGTD-------DAKGIPMPKDADLRLEFSDMVKDAFA 702

Query: 570 GNFNKDK---EAIKLYLLGSMKDSGNYT--LNRVRVSDAMQIVLGNTPVNINESMLMPPR 624
           G+        E  K Y  G M   G  +  ++      A+ +  G          ++ P 
Sbjct: 703 GDAQGASMAYEIAKDYYAGVMAKKGVVSGEIDNDIWKQAVNVATGGVHDYNGMGNVLLPW 762

Query: 625 GMSKTDFEDRLWYATKD-----TGEYDPYTIKYMNVGSGKYMIIKNGNPKVDKEGKTIII 679
           GMS   F+ ++  A  +       +  P      + G  +Y++       +  +G  +++
Sbjct: 763 GMSAEQFDKQVNQAWNEQVVGTGIKTPPGQYGLQSYGDSQYLVKLGTGYLLKDDGSPVVL 822

Query: 680 NV 681
           ++
Sbjct: 823 DL 824


>gi|89152439|ref|YP_512272.1| hypothetical structural protein [Escherichia phage phiV10]
 gi|74055462|gb|AAZ95911.1| hypothetical structural protein [Escherichia phage phiV10]
          Length = 837

 Score =  210 bits (533), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 84/542 (15%), Positives = 177/542 (32%), Gaps = 48/542 (8%)

Query: 171 FQRVQSITDHINSL--PIDLRLKQKLLSEAKEKLNTNQIIGAHARDPRVFENFMRAF--- 225
            Q + ++++ IN    P D       +    E+L  +      A +P   +    A    
Sbjct: 300 RQGIDTVSEIINRWAPPADKNDTMSYIKAVCEQLGVSADEPLDASNPDTLKALCAAIIHH 359

Query: 226 YKKGHPPKDSTSLSDVSDSARERSLEVVEDVSKAIGLAGWDRLDDTKRRRLLEHLSSRDN 285
                P  D    + V  SA      +  +  +  G A +D      +   +        
Sbjct: 360 ENGSQPYSDQQLTAGV--SAALGLSTIPTNTKRYTGNAAFDAASPEAQASFMRQADQLRR 417

Query: 286 ALNTKLRKETQAQARRIDAQLNHGITVKPSELIPLEDYTQAYGVEQGTELYNLQQFKSVA 345
               + +    +Q R   A    G+           D+  AYGV +G   Y   +   +A
Sbjct: 418 QQQAEYKTMIDSQVRDATAAYMRGVEFPNPP--GEADFIAAYGVREGNLRYTEFRNTQIA 475

Query: 346 APDVARIKLMSTFDAKKFLQKIDDEYISNPSLSLASTMMATKYKEILEKSHRQSMQELNQ 405
              +   + M T     +++++  +         A+        + +  +  Q +++   
Sbjct: 476 GQYIGSFRNMPTSSITAYVEQLRPDT-GETGEGYAAR---AALYDNVVSAASQVIKQRQA 531

Query: 406 DAISWGIKYKQIDPLRFDTEESFADSLRQRAGFVKKIKDDYNLTTSHFNKTEENQLRTQL 465
           D + + +   Q  P+    +++F  S+  RA  V  +   Y    + F+K E NQ+    
Sbjct: 532 DPVQFSLAAGQAKPIDMSNKDNFGQSVALRAAQVSDLAKSYGTPLTFFSKDEANQIGVFF 591

Query: 466 VKRPASESVDLIRGAYNTLSDSDKEGVRSSFAHIEDNGLSAVVR---------------- 509
              P S+    +     +      +   S+   I  N  SA V                 
Sbjct: 592 RDAPVSQQAAYLDTIRQSTGGG--QVYMSALQQISANAPSAAVAGILMDKPGGILAEKNW 649

Query: 510 LSSEFSDDAKNAAMVILSGMKHQKDTETRYNTDHKSNKFDSLYDSYINTPLTKLEQSTAG 569
            + + S   + AA  IL+G   +K T+        +       D+ +    + + +    
Sbjct: 650 FNPDVSVSPETAAQTILAGAAARKGTD-------DAKGIPMPKDADLRLEFSDMVKDAFA 702

Query: 570 GNFNKDK---EAIKLYLLGSMKDSGNYT--LNRVRVSDAMQIVLGNTPVNINESMLMPPR 624
           G+        E  K Y  G M   G  +  ++      A+ +  G          ++ P 
Sbjct: 703 GDAQGASMAYEIAKDYYAGVMAKKGVVSGEIDNDIWKQAVNVATGGVHDYNGMGNVLLPW 762

Query: 625 GMSKTDFEDRLWYATKD-----TGEYDPYTIKYMNVGSGKYMIIKNGNPKVDKEGKTIII 679
           GMS   F+ ++  A  +       +  P      + G  +Y++       +  +G  +++
Sbjct: 763 GMSAEQFDKQVNQAWNEQVVGTGIKTPPGQYGLQSYGDSQYLVKLGTGYLLKDDGSPVVL 822

Query: 680 NV 681
           ++
Sbjct: 823 DL 824


>gi|268589385|ref|ZP_06123606.1| hypothetical protein PROVRETT_05517 [Providencia rettgeri DSM 1131]
 gi|291315412|gb|EFE55865.1| hypothetical protein PROVRETT_05517 [Providencia rettgeri DSM 1131]
          Length = 832

 Score =  184 bits (466), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 81/445 (18%), Positives = 160/445 (35%), Gaps = 44/445 (9%)

Query: 261 GLAGWDRLDDTKRRRLLEHLSSRDNALNTKLRKETQAQARRIDAQLNHGITVKPSELIPL 320
           G   W  L   ++ +L++   +  N    + +     + +  +A    G +   S    L
Sbjct: 398 GFPWWPMLTPVQQYQLIKQGEAAQNKQRQEYKSVLDGKVKDAEALALRGES--YSNPPSL 455

Query: 321 EDYTQAYGVEQGTELYNLQQFKSVAAPDVARIKLMSTFDAKKFLQKIDDEYISNPSLSLA 380
           +++  A+G   G + Y   Q       D+A ++ +S       L+    +   + + +  
Sbjct: 456 DEFKYAHGENDGIKEYEQFQKNMAMGADIATVQYLSPQAQTALLESKKPKGDYDAANNY- 514

Query: 381 STMMATKYKEILEKSHRQSMQELNQDAISWGIKYKQIDPLRFDTEESFADSLRQRAGFVK 440
                 K  + L ++     +    D I + I  +Q++ L F + ++F +SL QR+  V 
Sbjct: 515 ------KRYDTLARAIDTVNKVRASDPIQFSIDRQQVNQLDFSSIQNFTNSLTQRSSNVG 568

Query: 441 KIKDDYNLTTSHFNKTEENQLRTQLVKRPASESVDLI----------RGAYNTLSDSDKE 490
            I  +Y    + F+  EE  L   + K PAS+ ++ +                L    K 
Sbjct: 569 DISKNYQTPLTVFSAQEELVLSQLMEKAPASQKIEYLDAIRQGLKNNESYTAALRQVSKS 628

Query: 491 GVRSSFAHIEDNGLSAVV----RLSSEFSDDAKNAAMVILSGMKHQKDTETRYNTDHKSN 546
               + A +  N  + +     + SS+     + AA +I+ G   +K             
Sbjct: 629 DTSLAVAGVIMNKPTQLTVEYNKWSSDIVVTPQQAAQLIVQGSTARK----------SGK 678

Query: 547 KFDSLYDSYINTPL----TKLEQSTAGGNFNKDKEAIKLYLLGSMKDSGNYT--LNRVRV 600
            F    D+ +          +      G  N   E  K    G M  +GN     ++   
Sbjct: 679 DFVLPKDTELREEFADFVGDVFAGDIDGA-NSAYEVAKDAYAGMMAKNGNINGEYDKDIW 737

Query: 601 SDAMQIVLGNTPVNINESMLMPPRGMSKTDFEDRLWYATK----DTGEYDPYTIKYMNVG 656
             A+ I  G          +M P GM    F+ ++    K    + G      I   ++G
Sbjct: 738 QQAINIATGGIYDFNGRGKVMLPWGMDGDTFKKQVKSELKYHEPEIGNISVDIIGMQSLG 797

Query: 657 SGKYMIIKNGNPKVDKEGKTIIINV 681
             +Y+I +     + K+G  +II++
Sbjct: 798 DSQYLIKRGSGYLLYKDGTPVIIDL 822


>gi|330007166|ref|ZP_08305908.1| hypothetical protein HMPREF9538_03597 [Klebsiella sp. MS 92-3]
 gi|328535513|gb|EGF61973.1| hypothetical protein HMPREF9538_03597 [Klebsiella sp. MS 92-3]
          Length = 838

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 80/470 (17%), Positives = 162/470 (34%), Gaps = 46/470 (9%)

Query: 250 LEVVEDVSKAIGLAGWDRLDDTKRRRLLEHLSSRDNALNTKLRKETQAQARRIDAQLNHG 309
           L  +E   +  G   +D     ++   L       N   T+ + +   Q +   A    G
Sbjct: 378 LTTLESPKRYSGNQAFDAASPQQQAAYLRQSMELRNQARTQFKAQLVDQVQDATAAYLKG 437

Query: 310 ITVKPSELIPLEDYTQAYGVEQGTELYNLQQFKSVAAPDVARIKLMSTFDAKKFLQKIDD 369
           I           D+  A+G  +GT+ +N  +   VA   +   + M T   ++++  + +
Sbjct: 438 IQFDNPP--SQGDFINAFGYREGTQRFNDFENLRVAGQYIGSFRTMPTASIQQYVSDLKN 495

Query: 370 EYISNPSLSLASTMMATKYKEILEKSHRQSMQELNQDAISWGIKYKQIDPLRFDTEESFA 429
           +  +     LA    A    + ++ + ++ + +   D     +      P+   T ++ A
Sbjct: 496 QVGN--GEGLAGRAAA---FDHVQAAAQRIISQRQSDPFQSAVDIGAYKPISNSTPDAIA 550

Query: 430 DSLRQRAGFVKKIKDDYNLTTSHFNKTEENQLRTQLV-KRPASESVDLIRGAYNTLSDSD 488
             ++ R     ++K    +T    +K E   L   +      ++++ L++G   TL    
Sbjct: 551 SEVKNRYAAQDQLKA-IGITPPLLSKQESQVLTDAVRNSTDVNQAISLLQGLGRTLPPQA 609

Query: 489 KEGVRSSFAHIEDNGLSAVVRLSSEF--------------------SDDAKNAAMVILSG 528
              V SS A        A + L  +                     + D  + A  +L+G
Sbjct: 610 LRSVASSIAPGSPGTAYAALLLGQQDNQYDNRSGIIPYSQFVSYKPTLDKYDVAKTVLAG 669

Query: 529 MKHQKDTETRYNTDHKSNKF--DSLYDSYINTPLTKLEQSTAGG------NFNKDKEAIK 580
            +    T+   +    +     D    +Y +  +      +A        NF +   A  
Sbjct: 670 DQMLNPTKAMKDAGISAVSIPSDEKLKTYFDKEVGNAFAYSAQARQVAWGNF-RSAYAAL 728

Query: 581 LYLLGSMKDSGNYTLNRVRVSDAMQIVLGNTPVNINESMLMPPRGMSKTDFEDRLWYATK 640
            Y  G    +   + +      A Q   G     +N S ++ P GM KT F DR   A +
Sbjct: 729 AYQSGDASKTNTVSPDSDIAEKAAQYATGGVYKGLNGSDVVMPFGMDKTTFRDRYTAAGR 788

Query: 641 DTGEYDP------YTIKYMNVGSGKYMIIKN-GNPKVD-KEGKTIIINVE 682
           +               K +NVG+ +Y ++   G    D +  + + + VE
Sbjct: 789 EAMTQAGLNPSSLENFKAVNVGNNQYRLVNGSGRWATDPRTNQPVTVRVE 838


>gi|301028420|ref|ZP_07191666.1| conserved hypothetical protein [Escherichia coli MS 196-1]
 gi|299878531|gb|EFI86742.1| conserved hypothetical protein [Escherichia coli MS 196-1]
          Length = 843

 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 82/539 (15%), Positives = 178/539 (33%), Gaps = 56/539 (10%)

Query: 187 DLRLKQKLLSEAKEKLNTNQIIGAHARDPRVFENFMRAF--YKKGHPPKDSTSLSDVSDS 244
           D       +     +L         A +P   ++  +A   +++G  P     L+    S
Sbjct: 318 DDNKTDAYIRAVCAQLGVTPDQPLDASNPDTLKSLCKAIIHHEQGSQPYSDQQLAAGV-S 376

Query: 245 ARERSLEVVEDVSKAIGLAGWDRLDDTKRRRLLEHLSSRDNALNTKLRKETQAQARRIDA 304
           A     ++     +  G+A +D L ++ +  +L    +       + R   +++ R   A
Sbjct: 377 AALGLSQLPTKNKRYTGVAWFDALSESDQASVLRQTDALARQQQAEYRTMLESRVRDATA 436

Query: 305 QLNHGITVKPSELIPLEDYTQAYGVEQGTELYNLQQFKSVAAPDVARIKLMSTFDAKKFL 364
               G+           ++  AYGV +G   Y   +   +A   +   + M T     ++
Sbjct: 437 AYMRGVEFPNPP--GEGEFIAAYGVREGNLRYTEFRNLQIAGQYIGSFRNMPTSSITAYV 494

Query: 365 QKIDDEYISNPSLSLASTMMATKYKEILEKSHRQSMQELNQDAISWGIKYKQIDPLRFDT 424
           +++  +         AS     +  + +  +  + + +   +  S  ++     P+  + 
Sbjct: 495 EQLRPDT-GETGEGYASR---AELFDRVSAAATKGITQRQNNPFSAAVEIGAYKPITSNN 550

Query: 425 EESFADSLRQRAGFVKKIKDDYNLTTSHFNKTEENQLRTQLVKRP-ASESVDLIRGAYNT 483
            +     +  R    + +     +     N  E   L  Q+       +++ L++     
Sbjct: 551 PDDITAEVANRFSSQESL-RALGINAPLLNSEEAAALAQQVRGTQNVDQTIKLLQSMGEK 609

Query: 484 LSDSDKEGVRSSFAHIEDNGLSAVVRLSSEF--------------------SDDAKNAAM 523
           L       V S  A        + + L +                      + +  + A 
Sbjct: 610 LPAPAIRQVASVIAPNSAATAYSALLLGTPDNQYDNTRPTIPYSQFIGYKPTMNKYDVAK 669

Query: 524 VILSG---------MKHQKDTETRYNTDHK-SNKFDSLYDSYI--NTPLTKLEQSTAGGN 571
           VILSG         MK+   T  +  ++ K  + FD    +    N  L ++  S     
Sbjct: 670 VILSGDQLLNPTKAMKNAGITPVQLPSEDKMKDAFDEQVGNAFARNPQLRQISYSLFKAA 729

Query: 572 FNKDKEAIKLYLLGSMKDSGNYTLNRVRVSDAMQIVLGNTPVNINESMLMPPRGMSKTDF 631
           +         Y  G          +   V+DA++   G      N   ++ P GM K+ F
Sbjct: 730 YAGIA-----YQSGDASTVRTSMPDTDIVADAVKYATGGIYNGFNGGDVVMPFGMDKSTF 784

Query: 632 EDRLWYATKDTGEYDPYTIKY------MNVGSGKYMIIKN-GNPKVD-KEGKTIIINVE 682
           +DR   + K   +     +        +N+G+ +Y ++   G    D +  K I++ VE
Sbjct: 785 KDRYTTSAKQALKDAGLNVNAVSNFTPVNIGNNRYRLVNGSGRWATDPRTNKAIVVRVE 843


>gi|30387394|ref|NP_848223.1| hypothetical protein epsilon15p15 [Enterobacteria phage epsilon15]
 gi|30266049|gb|AAO06078.1| 15 [Salmonella phage epsilon15]
          Length = 842

 Score = 96.1 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 84/554 (15%), Positives = 177/554 (31%), Gaps = 52/554 (9%)

Query: 171 FQRVQSITDHINSL--PIDLRLKQKLLSEAKEKLNTNQIIGAHARDPRVFENFMRAF--Y 226
            Q + ++ D IN    P D       +     +L         A +P   +    +   +
Sbjct: 299 RQGIDTVNDIINRWAPPSDNNNTDAYIQAVCAQLGVTPDQPLDASNPDTLKALCASIIQH 358

Query: 227 KKGHPPKDSTSLSDVSDSARERSLEVVEDVSKAIGLAGWDRLDDTKRRRLLEHLSSRDNA 286
           + G  P     L+    SA     ++     +  G A +D      +   L         
Sbjct: 359 ENGSQPYSDQQLATGV-SAAIGLSQLPTSTKRYTGNAAFDAASPEAQATFLRQADQIRKQ 417

Query: 287 LNTKLRKETQAQARRIDAQLNHGITVKPSELIPLEDYTQAYGVEQGTELYNLQQFKSVAA 346
              + R    ++ R   A    G+           D+  AYGV +G   Y   +   +A 
Sbjct: 418 QQAEYRTNIDSRVRDASAAYMRGV--DFPNAPTQTDFLAAYGVREGNLRYTEFRNTQIAG 475

Query: 347 PDVARIKLMSTFDAKKFLQKIDDEYISNPSLSLASTMMATKYKEILEKSHRQSMQELNQD 406
             +   + M T     +++++            AS     +  + +  +  + + +   +
Sbjct: 476 QYIGSFRNMPTSSITAYVEQLRPGTEET-GEGYASR---AQLFDQVTAAATKVITQRQNN 531

Query: 407 AISWGIKYKQIDPLRFDTEESFADSLRQRAGFVKKIKDDYNLTTSHFNKTEENQLRTQLV 466
             +  ++     P+  + +      +  R    + +     +     +  E   L  Q+ 
Sbjct: 532 PFNAAVEIGAYKPIASNNQNDITSEVANRFSSQESL-RALGINAPILSSEEAAALSEQVR 590

Query: 467 K-RPASESVDLIRGAYNTLSDSDKEGVRSSFAHIEDNGLSAVVRLSSEFSDDAKNAAMVI 525
             +  ++++ L++    TL       V S+ A   +N  +A   L     D+  +     
Sbjct: 591 GTKDVNQTISLLQSMGKTLPAPAMRQVASAIA--PNNAATAYSALLLGTPDNQYDNTKPS 648

Query: 526 LSGMKHQKDTETRYNTDHKS---------NKFDSLYDSYINT-------PLTKLEQSTAG 569
           ++  +      T    D            N   ++ D+ I          L +      G
Sbjct: 649 IAYSQFIGYKPTMNKYDVSKVILAGDQLLNPTKAMKDAGITPVQLPSEDKLKRAFDDQVG 708

Query: 570 GNFNKDKEA-------IKLYLLGSMKDSGNYTL------NRVRVSDAMQIVLGNTPVNIN 616
            +F  + +A        K    G    SG+ ++      N   V  A Q   G      N
Sbjct: 709 NSFANNPQARQLSYNLFKAAYAGIAYQSGDASMTKTDAANSDVVEKAAQYATGGVYKGFN 768

Query: 617 ESMLMPPRGMSKTDFEDRLWYATKDTGEYDPYTIKY------MNVGSGKYMIIKN-GNPK 669
              ++ P GM K+ F+DR   + +   +     +        +N+G+ +Y ++   G   
Sbjct: 769 GGDVVMPFGMDKSTFKDRYTASAQQALKDAGLNVNAVSNFTPVNIGNNQYRLVSGSGRWA 828

Query: 670 VD-KEGKTIIINVE 682
            D K  + I++ VE
Sbjct: 829 TDPKTNEAIVVRVE 842


>gi|304398392|ref|ZP_07380266.1| conserved hypothetical protein [Pantoea sp. aB]
 gi|304354258|gb|EFM18631.1| conserved hypothetical protein [Pantoea sp. aB]
          Length = 835

 Score = 93.4 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 75/477 (15%), Positives = 142/477 (29%), Gaps = 60/477 (12%)

Query: 250 LEVVEDVSKAIGLAGWDRLDDTKRRRLLEHLSSRDNALNTKLRKETQAQARRIDAQLNHG 309
           L  ++   +  G   +D      +   L    S      T+L+ +         A    G
Sbjct: 375 LTALDSPKRYTGNVAFDAASPQAQASYLRQAKSLQGEARTQLKAQLTDVISDAKASYLKG 434

Query: 310 ITVKPSELIPLEDYTQAYGVEQGTELYNLQQFKSVAAPDVARIKLMSTFDAKKFLQKIDD 369
           +  +            AYG  +G + +   + + VA   +   + M +     ++  +  
Sbjct: 435 V--EYPNPPSQAQLISAYGYREGNQRFADLENQRVAGQYIGSFRNMPSSSITNYVADLK- 491

Query: 370 EYISNPSLSLASTMMATKYKEILEKSHRQSMQELNQDAISWGIKYKQIDPLRFDTEESFA 429
                     A    A  Y  + E + +Q +     +     +      P+         
Sbjct: 492 -TQLGSGEGFAGR--ADAYDHV-EAAAKQVISLRESNPYQAAMDMGAYKPIASTNPADIT 547

Query: 430 DSLRQRAGFVKKIKDDYNLTTSHFNKTEENQLRTQLVKR-PASESVDLIRGAYNTLSDSD 488
             ++ R     ++K    +     +K E   +  ++      ++S+ L++       D  
Sbjct: 548 SEIKSRTAATDQLKS-LGINAPILSKEEAASISERVRGTTDVNQSISLLQSFG---RDLQ 603

Query: 489 KEGVRSSFAHIE-DNGLSAVVRLSSEFSDDAKN----------------------AAMVI 525
            + +RS  A I  D+  +A   L     D+  N                       A  I
Sbjct: 604 PQALRSVAASIAPDSAATAYSALILGTDDNQYNNRSPSIPYSQFVSYKPTMNKYEVAKTI 663

Query: 526 LSG------MKHQKDTETRYNTDHKSNKFDSLYDSYI------NTPLTKLEQSTAGGNFN 573
           L G       K QKD           +K    +D  I      N    ++  S     + 
Sbjct: 664 LQGDQLINPTKAQKDAGISAVKLPADDKLKQTFDDEIGNAFSHNPQARQMAWSIYKSAYA 723

Query: 574 KDKEAIKLYLLGSMKDSGNYTLNRVRVSDAMQIVLGNTPVNINESMLMPPRGMSKTDFED 633
                   Y  G         ++      A+Q+  G      N   ++ P GM K+ F+D
Sbjct: 724 GLA-----YTSGDSDGVNTKAVDSDIAEKAIQMATGGVIKGFNGGDVVMPFGMDKSTFKD 778

Query: 634 RLWYATKDTGEYDPYTIKYM------NVGSGKYMIIKN-GNPKVD-KEGKTIIINVE 682
           R   A  +  +               NVG  +Y ++   G    D K G  I + V+
Sbjct: 779 RYTAAAGEALKSAGLNPAAQSNFIPVNVGDSQYRLVTGSGRWATDPKTGAPITVRVQ 835



 Score = 46.8 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 111/688 (16%), Positives = 218/688 (31%), Gaps = 74/688 (10%)

Query: 5   TTNKPLVEAVTPNQDAVRDSVNPQ---AGLRDLGDALGKATQFLEGIRRDNAFATANTRY 61
           T+ + +++   P    V    NP    AG  ++G+ +  A  F +   + N   T +   
Sbjct: 6   TSQRQILDQGLPAPQ-VSVQTNPDTFGAGWGEVGNRI--AGIFAQEQHKANVAQTQDA-V 61

Query: 62  TELSFKAVQDFHDFTNSLDTRDSLQAGDKIKEYVDGRIRSAYDRFLSSISHRDVRKKFQA 121
            +    A   F++  + L T+    A  + +  +   IR   +     +    +R+ F  
Sbjct: 62  LQFQSFADDQFNNTDSGLYTKQGKNAVGQSEAVLSN-IRGKAEELSKQVP-EAMRRDFIQ 119

Query: 122 QVEHDIRDYHTKGVDIQIGATQRAQEDN----LNMTVGLAAAHVLHDPSNENYFQRVQSI 177
           Q+    + Y  +    +IG   R  E+     L  +   AA    +DP  + +   V+  
Sbjct: 120 QINQAGQQYKRQASTYEIG-QVRQYEEGQFKALQESTVTAAQGQYNDP--QAFTSTVKQG 176

Query: 178 TDHINSLPIDLRLKQKLLSEAKEKLNTNQIIGAHARDPRVFENFMRAFYKKGHPPKDSTS 237
              I+          +  S AK +L      GA +      +N+M      G P     +
Sbjct: 177 FTAIDQFADAHGWSDEERSNAKNQLKERSADGALSAAAN--QNYMDFIAANGEPGDYDGA 234

Query: 238 LSDVSDSARERSLEVVEDVSKAIGLAGWDRLDDTKR------------RRLLEHLSSRDN 285
           +     +   R L      +   G   W+    +              R L ++L S  +
Sbjct: 235 VRVSGSTGDARGLRNNNPGNIEAGQNNWEGQAGSDGRFAKFVTPEHGIRALGKNLLSYGD 294

Query: 286 AL--------NTKLRKETQAQARRIDAQLNHGITVKPSELIPLEDYTQAYGVEQGTELYN 337
                     N                 L   ++VKP + + L D      +  G     
Sbjct: 295 KGFDTVNEIVNRWAPASDGNNTTAYVKALCEQLSVKPDDQLNLSDLNVLKKLSAG----- 349

Query: 338 LQQFKSVAAPDVARIKLMSTFDAKKFLQKIDD--EYISNPSLSLASTMMATKYK---EIL 392
           + + ++ + P  +  +L +   A   L  +D    Y  N +   AS      Y    + L
Sbjct: 350 IVKHENGSIPY-SDSQLDTGLRAALGLTALDSPKRYTGNVAFDAASPQAQASYLRQAKSL 408

Query: 393 EKSHRQSMQELNQDAISWGIKY--KQIDPLRFDTEESFADSLRQRAGFVKKIKDDYNLTT 450
           +   R  ++    D IS       K ++     ++     +   R G  ++  D      
Sbjct: 409 QGEARTQLKAQLTDVISDAKASYLKGVEYPNPPSQAQLISAYGYREG-NQRFAD------ 461

Query: 451 SHFNKTEENQLRTQLVKRPASESVDLIRGAYNTLSDSDK-EGVRSSFAHIEDNGLSAVVR 509
              N+    Q        P+S   + +      L   +   G   ++ H+E    +A  +
Sbjct: 462 -LENQRVAGQYIGSFRNMPSSSITNYVADLKTQLGSGEGFAGRADAYDHVE----AAAKQ 516

Query: 510 LSSEFSDDAKNAAMVILSGMKHQKDTETRYNTDHKSN--KFDSLYDSYINTPLTKLEQST 567
           + S    +   AAM + +             ++ KS     D L    IN P+   E++ 
Sbjct: 517 VISLRESNPYQAAMDMGAYKPIASTNPADITSEIKSRTAATDQLKSLGINAPILSKEEAA 576

Query: 568 AGGNFNKDKEAIKLYLLGSMKDSGNYTLNRVRVSDAMQIVLGNT-PVNINESMLMPPRGM 626
           +     +    +   +  S+      +  R     A++ V  +  P +   +      G 
Sbjct: 577 SISERVRGTTDVNQSI--SLLQ----SFGRDLQPQALRSVAASIAPDSAATAYSALILGT 630

Query: 627 SKTDFEDRLWYA-TKDTGEYDPYTIKYM 653
               + +R           Y P   KY 
Sbjct: 631 DDNQYNNRSPSIPYSQFVSYKPTMNKYE 658


>gi|319793415|ref|YP_004155055.1| hypothetical protein Varpa_2746 [Variovorax paradoxus EPS]
 gi|315595878|gb|ADU36944.1| hypothetical protein Varpa_2746 [Variovorax paradoxus EPS]
          Length = 732

 Score = 83.7 bits (205), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 86/587 (14%), Positives = 182/587 (31%), Gaps = 60/587 (10%)

Query: 142 TQRAQEDNLNMTVGLAAAHVLHDPSNENYFQRVQSITDHINSLPIDLRLKQKLLSEAKEK 201
                   L      A   V+             +  D +  + +        L E    
Sbjct: 132 QYSRGAQRLRFQATAAVNQVIDTAQRSELKSTFTAGLDRLGKIALLP---DASLEEVLAN 188

Query: 202 LNTNQIIGAHARDPRVFENFMRAFYKKGHPPKDSTSLSDVSDSARERSLEVVEDVSKAIG 261
            +   + G  A  P          +K     + + S   V+      SL+  +   +   
Sbjct: 189 ADKVALSGRAAGIPEADVAKQVQTFKDNTRFQRAQS-DLVAARRDMPSLDAFQQRLETGD 247

Query: 262 LAGWDRLDDTKRRRLLEHLSSRDNALNTKLRKETQAQARRIDAQLNHGITVKPSEL---- 317
           L+G   LD  KR  LL+      + L  + + + Q    + +      +T    ++    
Sbjct: 248 LSG--TLDPDKRIALLKE----TDTLKFQAQNQQQHALDKREKLAERAVTNATRQIETGL 301

Query: 318 -IPLEDYTQAYGVEQGTELYNLQQFKSVAAPDVARIKLMSTFDAKKFLQKIDDEYISNPS 376
            +  + +T      +GT              D  ++  M   D ++++Q  + E      
Sbjct: 302 PLTADGWTGLRTTVEGTPYAEDFNRLVKQERDTQQVLRMPMADQQRYIQTREAELQQAGG 361

Query: 377 LSLASTMMATKYKEILEKSHRQSMQELNQDAIS-WGIKYKQIDPLRFDTEESFADS---L 432
            +LA      + K  +E + +Q   E    A   +G   + +DP           +    
Sbjct: 362 -TLADRANLQRIKATVENNAKQLADEPLVAAQRLFGRAVQPLDPNDLLQPGGAGRAAGIF 420

Query: 433 RQRAGFVKKIKDDYN--LTTSHFNKTEENQLRTQLVKRPASESVDLIRGAYNTLSDSDKE 490
             RA  +  ++  Y   + T      E   L   +     +++  L       ++D D  
Sbjct: 421 ADRAATLAAMQKQYGSQVGTKPLLPQEAGLLVKAIDSAGPADANQLFGTLRGAINDDDT- 479

Query: 491 GVRSSFAHI----------------EDNGLSAVVRLSSEFSDDAKNAAMVILSGMKHQKD 534
             R+    I                +         ++S+    +   A  +L+G      
Sbjct: 480 -YRAVMQQIAPDSPVKARAGMLTAIDRPVTIQSNLIASDVRVSSAKVAETMLAGEIILNK 538

Query: 535 TETRYNTDHKSNKFDSLYDSYINTPL----TKLEQSTAGGNFNKDKEAIKLYLLGSMKDS 590
           T+ +   D +++          +T        L +S  G     D +A   Y +G   + 
Sbjct: 539 TKGQKQVDGQAHSLFVPARQDFSTAFVDSVGNLYRSRPGAQ-EGDLQAAFAYYVGKSAEL 597

Query: 591 GNYT-----LNRVRVSDAMQIVLGNTPVNINESMLMPPRGMSKTDFE----DRLWYATKD 641
           G        ++   V +A+   +G+      +     P GM+ +D +    +R     K+
Sbjct: 598 GRLASTPKDIDSTLVKEAITATIGDVVDVNGQGKAKAPIGMTGSDMQAKLRERFSEMVKE 657

Query: 642 TGEYDPYTIKYMNVG------SGKYMIIKNGNPKVDKEGKTIIINVE 682
                     + + G       G+YM+   G P + K G  ++++++
Sbjct: 658 QDMPPSAVASFEHYGVINYRRDGQYMLTLGGAPVLGKGGAPLVVDLD 704


>gi|48697205|ref|YP_024935.1| hypothetical protein BcepC6B_gp15 [Burkholderia phage BcepC6B]
 gi|47779011|gb|AAT38374.1| gp15 [Burkholderia phage BcepC6B]
          Length = 706

 Score = 77.2 bits (188), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 108/710 (15%), Positives = 208/710 (29%), Gaps = 118/710 (16%)

Query: 26  NPQAGLRDLGDALGKATQFLEGIRRDN-----AFATANTRYTEL-SFKAVQDFH-----D 74
           N  A L+ +G +LG+ T  L   +R +     A    + R T L + +  +D       D
Sbjct: 31  NTGAALQQVGTSLGQVTDVLAAQKRQDEQAAVARQIGDDRVTWLQNMQTAKDSAAPGAPD 90

Query: 75  FTNSLDTRDSLQAGDKIKEYVDGRIRSAYDRFLSSISHRDVRKKFQAQVEHDIRDYHTKG 134
           FT +L       +  ++++  DG  +  Y   LS +      +    Q E    +     
Sbjct: 91  FTPNLIKGFDDYSQQQLQQMPDGNAKRFYTLQLSELRTSLAGQAVTWQAEQHRAN---NV 147

Query: 135 VDIQIGATQRAQEDNLNMTVGLAAAHVLHDPSNENYFQRVQSITDHINSLPIDLRLKQKL 194
              Q G          N T    A  +  DPS     +  Q     I+S  +D + K KL
Sbjct: 148 NQYQQG----------NDTA---ARAIAMDPSLYGSTRASQLAL--IDSAALDPQTKAKL 192

Query: 195 LSEAKEKLNTNQIIGAHARDPRVFENFMRAFYKKGHPPKDSTSLSDVSDSARERSLEVVE 254
               K+  +T   +   + DP      +     +  P                       
Sbjct: 193 ADNFKDVASTAAGMRMVSADPAATLGVLTQKPDQPLP----------------------- 229

Query: 255 DVSKAIGLAGWDRLDDTKRRRLLEHLSSRDNALNTKLRKETQAQARRIDAQLNHGITVKP 314
                   AG++ + D    +L+             L  + Q    R   Q  +      
Sbjct: 230 --------AGYEWVGDLPPTKLI-----ALQGHARTLVAQQQNALDRAALQRENTAVDLH 276

Query: 315 SELIPLEDYTQAYGVEQGTELYNLQQFKSVAAPDVARIKLMSTFDAKKFLQKIDDE---- 370
           ++ + L +  +    E   +L    +  +  A  V  + + +      F      +    
Sbjct: 277 NQALTLVNEGKQLSPEFTNQLLTNTE-GTTVAGAVREL-IGTASQHAGFASASLPQQAAT 334

Query: 371 ---YISNPSLSLASTMMATKYKEILEKSHRQSMQELNQDAISWGIKYKQIDPLR-FDTEE 426
              Y +  +        A   K+ LE+ H  S+     D  +  +    +  +   DT  
Sbjct: 335 LQQYQTEAATRGTDPDQAASVKQ-LEQIHTASVAAYKADPWNAALDRGVLQGVPKVDTSS 393

Query: 427 --SFADSLRQRAGFVKKIKDDYNLTTSHFNKTEENQLRTQLVKRPASESVDLIRGAYNTL 484
                 SL  RA     ++       S     E  +  T +   P    +D    A N +
Sbjct: 394 VPGLVSSLAARAQTAGAVEQAAGRRVSLLTPDEAEKTLTAVDSLP----IDTKAQALNQI 449

Query: 485 SDSDKEG--VRSSFAHIEDNGLSAVVRLSSEFSDDAKNAAMVILSGMKHQKDT---ETRY 539
             +      +    A  ++   +  + L +     A      +L+       T       
Sbjct: 450 GQAFGNAGRIADLAAQWKEKSPAMALALKAG---AADVGGKPLLTTSGAPLSTFILTGAQ 506

Query: 540 NTDHKSNKFDSLYDSYINTPLTKLEQSTAGGNFNKDKEAIKLYLL-GSMKDSGNYTLNRV 598
               K+ K D +  + +   +              D +    ++  GS    G    +  
Sbjct: 507 ALKDKTVKIDEVAGTGMRATIANAIGDALPPEQADDAKEAAYFIAAGSAARGGRTQPSST 566

Query: 599 RVSDAMQIVLGNTPVNINE------SMLMPPRGMSKTDFEDRLWYATKDTGEYDP----- 647
            V +A+    G       +      +++  P G  + DF+  +   T    E        
Sbjct: 567 DVQNAISGATGGISTTGGQQINGKPNIVAMPYGWREDDFQSAVKQVTAANIENPGVDSVL 626

Query: 648 ---------------YTIKYMNVG-SGKYMIIKNGNPKVDKEGKTIIINV 681
                           + + + VG  G Y +        DK G  + +++
Sbjct: 627 ANGHEIPVADFVKQFASYRLVRVGIRGTYAVSTGSKFVTDKTGAPVTVHL 676


>gi|221213944|ref|ZP_03586917.1| conserved hypothetical protein [Burkholderia multivorans CGD1]
 gi|221166121|gb|EED98594.1| conserved hypothetical protein [Burkholderia multivorans CGD1]
          Length = 706

 Score = 76.8 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 98/655 (14%), Positives = 193/655 (29%), Gaps = 115/655 (17%)

Query: 74  DFTNSLDTRDSLQAGDKIKEYVDGRIRSAYDRFLSSISHRDVRKKFQAQVEHDIRDYHTK 133
           DFT +L       A  ++++  DG  +  Y     ++   D+R     Q      + H  
Sbjct: 92  DFTPNLIKGFDDYAQQQLQQMADGPAKRFY-----TLQLNDLRTSLAGQAIAWQAEQH-- 144

Query: 134 GVDIQIGATQRAQEDNLNMTVGLAAAHVLHDPSNENYFQRVQSITDHINSLPIDLRLKQK 193
                +   Q+  +         AA  +  DP+     +  Q     I++  ID + K K
Sbjct: 145 -RSYNVSQYQQGND--------AAARAIAMDPNLYGATRASQLAL--IDAAQIDPQTKAK 193

Query: 194 LLSEAKEKLNTNQIIGAHARDPRVFENFMRAFYKKGHPPKDSTSLSDVSDSARERSLEVV 253
           L+   K+  +T   +   + DP      M     +  P                      
Sbjct: 194 LVENFKDVASTAAGMRMVSNDPAAALGVMTQKPDQPLP---------------------- 231

Query: 254 EDVSKAIGLAGWDRLDDTKRRRLLEHLSSRDNALNTKLRKETQAQARRIDAQLNHGITVK 313
                    AG++ + D    +L+             L  + Q  A R   Q  +     
Sbjct: 232 ---------AGYEWVGDLPPAKLV-----ALQGHARTLVAQRQNAAEREALQRENAAVDL 277

Query: 314 PSELIPLEDYTQAYGVEQGTELYNLQQFKSVAAPDVARIKLMSTFDAKKFLQKIDDEYIS 373
            ++ + L +  +    E   +L    Q  +  A  V  +  M++  A      +  +  +
Sbjct: 278 HNQALTLVNEGKQLSPEFTNQLLTSTQ-GTSVADAVRELIGMASQRAGFASASLAQQAAT 336

Query: 374 NPSLSLASTMMAT-----KYKEILEKSHRQSMQELNQDAISWGIKYKQIDPLR-FDTEE- 426
                  +    T        + LE+ H  S+     D  +  +    +  +   DT   
Sbjct: 337 LQQYQTEAATRGTDPDQAATVKQLEQIHTASVAAYKADPWNAALDRGVLQGVPQVDTTSV 396

Query: 427 -SFADSLRQRAGFVKKIKDDYNLTTSHFNKTEENQLRTQLVKRPASESVDLIRGAYNTLS 485
                SL  RA     ++       S     E   +   +   P    +D    A N + 
Sbjct: 397 PGLVTSLASRAQAAGAVEQAAGRRVSLLTPDEAQTVLNAVDALP----IDTKAQALNQIG 452

Query: 486 D--SDKEGVRSSFAHIEDNGLSAVVRLSSEFSDDAKNAAMV---------ILSGMKHQKD 534
               +   +    A  ++   +  + L +  +D      M          IL+G +  KD
Sbjct: 453 QAFGNAGRIADLAAQWKEKSPAMALALKAGAADAGGRPLMTTSGAPLSTFILAGAQALKD 512

Query: 535 TETRYNTDHKSNKFDSLYDSYINTPLTKLEQSTAGGNFNKDKEAIKLYLL-GSMKDSGNY 593
                    K+ K D +  + +   +      +      +D +    ++  GS    G  
Sbjct: 513 ---------KTVKIDDVAGTGMRATIANAIGDSLPTEQAEDAKEAAYFIAAGSAARGGRT 563

Query: 594 TLNRVRVSDAMQIVLGNTPVNIN------ESMLMPPRGMSKTDFEDRLWYATKDTGEYDP 647
             +   V +A+    G              +++  P G  + DF+  +   T    E   
Sbjct: 564 QPSSTDVQNAISGATGGISTTGGLQINGKPNIVAMPYGWREEDFQSAVKSVTAANIENPG 623

Query: 648 --------------------YTIKYMNVG-SGKYMIIKNGNPKVDKEGKTIIINV 681
                                + + + VG  G Y +        DK G  I +++
Sbjct: 624 VDTVVANGHEIPVADFVKQFASYRLVRVGVRGTYAVKTGSKFVTDKSGTPITVHL 678


>gi|221201508|ref|ZP_03574547.1| conserved hypothetical protein [Burkholderia multivorans CGD2M]
 gi|221207936|ref|ZP_03580942.1| conserved hypothetical protein [Burkholderia multivorans CGD2]
 gi|221172121|gb|EEE04562.1| conserved hypothetical protein [Burkholderia multivorans CGD2]
 gi|221178776|gb|EEE11184.1| conserved hypothetical protein [Burkholderia multivorans CGD2M]
          Length = 706

 Score = 76.4 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 99/655 (15%), Positives = 194/655 (29%), Gaps = 115/655 (17%)

Query: 74  DFTNSLDTRDSLQAGDKIKEYVDGRIRSAYDRFLSSISHRDVRKKFQAQVEHDIRDYHTK 133
           DFT +        A  ++++  DG  +  Y     ++   D+R     Q      + H  
Sbjct: 92  DFTPNFIKGFDDYAQQQLQQMADGPAKRFY-----TLQLNDLRTSLAGQAITWQAEQH-- 144

Query: 134 GVDIQIGATQRAQEDNLNMTVGLAAAHVLHDPSNENYFQRVQSITDHINSLPIDLRLKQK 193
                +   Q+  +         AA  +  DP+     +  Q     I++  ID + K K
Sbjct: 145 -RSYNVSQYQQGND--------AAARAIAMDPNLYGATRASQLAL--IDAAQIDPQTKAK 193

Query: 194 LLSEAKEKLNTNQIIGAHARDPRVFENFMRAFYKKGHPPKDSTSLSDVSDSARERSLEVV 253
           L+   K+  +T   +   + DP      M     +  P                      
Sbjct: 194 LVENFKDVASTAAGMRMVSNDPAAALGVMTQKPDQPLP---------------------- 231

Query: 254 EDVSKAIGLAGWDRLDDTKRRRLLEHLSSRDNALNTKLRKETQAQARRIDAQLNHGITVK 313
                    AG++ + D    +L+        A    L  + Q  A R   Q  +     
Sbjct: 232 ---------AGYEWVGDLPPAKLI-----ALQAHARTLVAQQQNAAEREALQRENAAVDL 277

Query: 314 PSELIPLEDYTQAYGVEQGTELYNLQQFKSVAAPDVARIKLMSTFDAKKFLQKIDDEYIS 373
            ++ + L +  +    E   +L    Q  +  A  V  +  M++  A      +  +  +
Sbjct: 278 HNQALTLVNEGKQLSPEFTNQLLTSTQ-GTSVAGAVRELIGMASQRAGFASASLAQQAAT 336

Query: 374 NPSLSLASTMMAT-----KYKEILEKSHRQSMQELNQDAISWGIKYKQIDPLR-FDTEE- 426
                  +    T        + LE+ H  S+     D  +  +    +  +   DT   
Sbjct: 337 LQQYQAEAATRGTDPDQAATVKQLEQIHTASVAAYKADPWNAALDRGVLQGVPQVDTSSV 396

Query: 427 -SFADSLRQRAGFVKKIKDDYNLTTSHFNKTEENQLRTQLVKRPASESVDLIRGAYNTLS 485
                SL  RA     ++       S     E   + T +   P    +D    A N + 
Sbjct: 397 PGLVTSLASRAQAAGAVEQAAGRRVSLLTPDEAQTVLTAVDALP----IDTKAQALNQIG 452

Query: 486 D--SDKEGVRSSFAHIEDNGLSAVVRLSSEFSDDAKNAAMV---------ILSGMKHQKD 534
               +   +    A  ++   +  + L +  +D      M          IL+G +  KD
Sbjct: 453 QAFGNAGRIADLAAQWKEKSPAMALALKAGAADAGGRPLMTTSGAPLSTFILAGAQALKD 512

Query: 535 TETRYNTDHKSNKFDSLYDSYINTPLTKLEQSTAGGNFNKDKEAIKLYLL-GSMKDSGNY 593
                    K+ K D +  + +   +      +      +D +    ++  GS    G  
Sbjct: 513 ---------KTVKIDDVAGTGMRAAIANAIGDSLPPEQAEDAKEAAYFIAAGSAARGGRT 563

Query: 594 TLNRVRVSDAMQIVLGNTPVNIN------ESMLMPPRGMSKTDFEDRLWYATKDTGEYDP 647
             +   V +A+    G              +++  P G  + DF+  +   T    E   
Sbjct: 564 QPSSTDVQNAISGATGGISTTGGLQINGKPNIVAMPYGWREEDFQSAVKSVTAANIENPG 623

Query: 648 --------------------YTIKYMNVG-SGKYMIIKNGNPKVDKEGKTIIINV 681
                                + + + VG  G Y +        DK G  I +++
Sbjct: 624 VDTVVANGHEIPVADFVKQFASYRLVRVGVRGTYAVSTGSKFVTDKTGAPITVHL 678


>gi|254251751|ref|ZP_04945069.1| hypothetical protein BDAG_00948 [Burkholderia dolosa AUO158]
 gi|124894360|gb|EAY68240.1| hypothetical protein BDAG_00948 [Burkholderia dolosa AUO158]
          Length = 698

 Score = 70.6 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 70/474 (14%), Positives = 145/474 (30%), Gaps = 47/474 (9%)

Query: 247 ERSLEVVEDVSKAIGLAGW--DRLDDTKRRRLLEHLSSRDNALNTKLRKETQAQARRIDA 304
                + +         G+   +LD  KR ++L  + S   +L  ++  E QA+ R    
Sbjct: 226 GDLAALTQLEKDLTSPDGYYAGKLDAGKRNQVLASVVSNRLSLQNQMTSEQQAREREAVT 285

Query: 305 QLNHGIT-VKPSELIPLEDYTQAYGVEQGTELYNLQQFKSVAAPDVARIKLMSTFDAKKF 363
             N     +   +    E   Q     +GT L    Q     A   A    +S  + +  
Sbjct: 286 AFNQATDLMTQGKRFSPEYVQQLTAATRGTALEQQTQGVIKQAAVGASFSTLSVPEMRAA 345

Query: 364 LQKIDDEYISNPSLSLASTMMATKYKEILEKSHRQSMQELNQDAISWGIKYKQID---PL 420
           +Q  + +  +         + A   K+  ++    + +   +D  +  ++   ID   P+
Sbjct: 346 VQANESK-QNQSG---TDPLEAAAIKQQ-KQILTATDEAYKRDPWNAALERGAIDVVPPI 400

Query: 421 RFDTEESFADSLRQRAGFVKKIKDDYNLTTSHFNKTEENQLRTQLVKRPASESVDLIRGA 480
                   A SL  RA     ++       S     E   +   +   P +     +   
Sbjct: 401 DTSGITQLASSLAARAQLAPVVEHKAARRVSLLTPDEARNVLQTIDALPTNTKAQALALL 460

Query: 481 YNTLSDSDKEGVRSSFAHIEDNGLSAVVRLSSEFSDDAKNAAMVILSGMK-HQKDTETRY 539
             ++ ++    +       +D   +A +      + D     +++ SGM   Q   + + 
Sbjct: 461 GRSMGNA--ARINDLAEQWKDKSPAAALA-MKAGAADPSGGPLMMQSGMPVAQYILDGQD 517

Query: 540 NTDHKSNKFDSLYDSYINTPLTKLEQSTAGGNFNKDKEAIKLYLL-GSMKDSGNYTLNRV 598
              +K  K D+   + +   + K            D      +    S + +G    N  
Sbjct: 518 ALANKLVKVDAAAATGLQATIAKRIGDALPPQQLGDARETAYFAAVASARKNGRDVPNST 577

Query: 599 RVSDAMQIVLGNTP-----VNINESMLMP-PRGMSKTDFEDRLWYATKDTGEYDPY---- 648
            V   + +  G            +  +   P G S  DF+  +  A+    E  P     
Sbjct: 578 DVETGINVATGGLAKTGGIDPRGDRYMAAKPWGWSDDDFDGGVKQASITNIENQPGGRPV 637

Query: 649 --------------------TIKYMNVG-SGKYMIIKNGNPKVDKEGKTIIINV 681
                               + +   VG  G Y ++    P  D  G  ++I++
Sbjct: 638 DSVIANGTKIPIDQFMQQFASYRLQRVGIGGTYTVLTGARPVTDTTGAPLLIHL 691


>gi|50282962|ref|YP_053018.1| hypothetical protein VP5_gp16 [Vibrio phage VP5]
          Length = 694

 Score = 69.9 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 106/662 (16%), Positives = 217/662 (32%), Gaps = 77/662 (11%)

Query: 1   MIEITTNKPLVEAVTPNQDAVRDS-VNPQAGLRDLGDA----LGKATQFLEGIRRDNAFA 55
           MI + T   L    TP+   +  S V+    +  + +     + K  Q     +++ AF+
Sbjct: 1   MINLPTAAQLQTPATPSAQGLASSIVSNNQKVMGIANQAASEVNKVIQERNDEQQNAAFS 60

Query: 56  TANTRYTELSFKAVQDFHDFTNSLDTRDSLQAGDKIKEYVDGRIRSAYDRFLSSISHRDV 115
             N       F A     ++    +  D L      +  +D          +  +  R  
Sbjct: 61  KVNN--VMHDFDAANAGKEYYTGDEIPDDLDFKKT-EIQIDAD-----GNEVEVVRERIP 112

Query: 116 RKKFQAQVEHDIRDYHTKGVDIQIGATQRAQEDNLNMTVGLAAAHVLHDPSNENYFQRVQ 175
             + QA +               I +  R       M     + ++        Y +R  
Sbjct: 113 AYEIQAAMRDKYHRKAIAAAAADIESPSRRTLFMQQMEERANSQNIR-------YLERSA 165

Query: 176 SITDHINSLPIDLRLKQKLLSEAKEKLNTNQIIGAHARDPRVFENFMRAFYKKGHPPKDS 235
           +          +    Q LL+   E           A +   F        +K    +  
Sbjct: 166 AEQTESIRRQQNEDFTQSLLNRDYETAA------YIAHN---FNGSDTERQEKARNVRYM 216

Query: 236 TSLSDVSDSARERSLEVVEDVSKAIGLAGWDR-LDDTKRRRLLEHLSSRDNALNTKLRKE 294
                 +D+  E  +  ++   K +   G+   L++ +R   ++ L +R N +N +    
Sbjct: 217 MEADSYADAMSEDDVGRMQSALKFLSKDGYAGELNEPQRLATIDQLKARINLVNKRNEAS 276

Query: 295 TQAQARRIDAQLNHGITV-KPSELIPLEDYTQAYGVEQG-----------TELYNLQQFK 342
            Q +   +  +++  I   +  E++  +   + +   Q            +       F 
Sbjct: 277 YQGRLTLLGVEVDRTIDALESGEMVSPQHQARLFAQIQAAKDAGLISSEDSSWVKRTAFF 336

Query: 343 SVAA---PDVARIKLMSTFDAKKFLQKIDDEYISNPSLSLASTMMATKYKEILEKSHRQS 399
           S AA   PD+ + K     + +  ++++ +  +S                +I  K+H  +
Sbjct: 337 SEAATYSPDLVQFKSKPLQEQEAVIREMRNSAVSGSDYH---------KLDIYTKNHENA 387

Query: 400 MQELNQDAISWGIKYKQIDPLRFDTEESFADSLRQRAGFVKKIKDDYNLTT--SHFNKTE 457
              LN D + +G +   ID   FD  +  A SL +R   V  +K  Y  +   + F K E
Sbjct: 388 KSMLNSDPLMYGAQTGIIDLQPFDFADP-AASLVKRQNDVASMKSQYGDSMVPAFFTKQE 446

Query: 458 ENQLRTQLVKRPASESVDLIRGAYNTLSDSDKEGVRSSFAHIEDNGLSAVVRLSSEFSDD 517
             +    +   P  + + ++      LS  +   VRS    +  NG   +   S     +
Sbjct: 447 AMEFSRVVQDAPVKDQMRMLSIINGQLSKDNANAVRS---QLMGNGGGVLAVASDALDSN 503

Query: 518 AKNAAMVILSGMKHQKDTETRYNTDHKSNKFDSLYDSYINT----PLTKLEQSTAGGNFN 573
               A  IL G    K+             F S  D+  +      +     ++      
Sbjct: 504 QPYVAEKILMGRNALKEVP---------EAFKSW-DTDASPLVLSEIGNAYSASP-ATMG 552

Query: 574 KDKEAIKLYLLGSMKDSGNY--TLNRVRVSDAMQIVLGNTPVNINESMLMPPRGMSKTDF 631
           +  E+IK        + G++  T+N  R+   ++ V G      + +++ P R M +  F
Sbjct: 553 QVMESIKAAYAAQTVNEGDFSGTINSKRLKSVIKEVTGGLIKIGSSTIVSPDRNMDENKF 612

Query: 632 ED 633
           + 
Sbjct: 613 DS 614


>gi|50282929|ref|YP_052985.1| hypothetical protein VP2p17 [Vibrio phage VP2]
          Length = 694

 Score = 69.5 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 105/662 (15%), Positives = 217/662 (32%), Gaps = 77/662 (11%)

Query: 1   MIEITTNKPLVEAVTPNQDAVRDSV-NPQAGLRDLGDA----LGKATQFLEGIRRDNAFA 55
           MI + T   L    TP+   +  S+ +    +  + +     + K  Q     +++ AF+
Sbjct: 1   MINLPTAAQLQTPATPSAQGLASSIISNNQKVMGIANQAASEVNKVIQERNDEQQNAAFS 60

Query: 56  TANTRYTELSFKAVQDFHDFTNSLDTRDSLQAGDKIKEYVDGRIRSAYDRFLSSISHRDV 115
             N       F A     ++    +  D L      +  +D          +  +  R  
Sbjct: 61  KVNN--VMHDFDAANAGKEYYTGDEIPDDLDFKKT-EIQIDAD-----GNEVEVVRERIP 112

Query: 116 RKKFQAQVEHDIRDYHTKGVDIQIGATQRAQEDNLNMTVGLAAAHVLHDPSNENYFQRVQ 175
             + QA +               I +  R       M     + ++        Y +R  
Sbjct: 113 AYEIQAAMRDKYHRKAIAAAAADIESPSRRTLFMQQMEERANSQNIR-------YLERSA 165

Query: 176 SITDHINSLPIDLRLKQKLLSEAKEKLNTNQIIGAHARDPRVFENFMRAFYKKGHPPKDS 235
           +          +    Q LL+   E           A +   F        +K    +  
Sbjct: 166 AEQTESIRRQQNEDFTQSLLNRDYETAA------YIAHN---FNGSDTERQEKARNVRYM 216

Query: 236 TSLSDVSDSARERSLEVVEDVSKAIGLAGWDR-LDDTKRRRLLEHLSSRDNALNTKLRKE 294
                 +D+  E  +  ++   K +   G+   L++ +R   ++ L +R N +N +    
Sbjct: 217 MEADSYADAMSEDDVGRMQSALKFLSKDGYAGELNEPQRLATIDQLKARINLVNKRNEAS 276

Query: 295 TQAQARRIDAQLNHGITV-KPSELIPLEDYTQAYGVEQG-----------TELYNLQQFK 342
            Q +   +  +++  I   +  E++  +   + +   Q            +       F 
Sbjct: 277 YQGRLTLLGVEVDRTIDALESGEMVSPQHQARLFAQIQAAKDAGLISSEDSSWVKRTAFF 336

Query: 343 SVAA---PDVARIKLMSTFDAKKFLQKIDDEYISNPSLSLASTMMATKYKEILEKSHRQS 399
           S AA   PD+ + K     + +  ++++ +  +S                +I  K+H  +
Sbjct: 337 SEAATYSPDLVQFKSKPLQEQEAVIREMRNSAVSGSDYH---------KLDIYTKNHENA 387

Query: 400 MQELNQDAISWGIKYKQIDPLRFDTEESFADSLRQRAGFVKKIKDDYNLTT--SHFNKTE 457
              LN D + +G +   ID   FD  +  A SL +R   V  +K  Y  +   + F K E
Sbjct: 388 KSMLNSDPLMYGAQTGIIDLQPFDFADP-AASLVKRQNDVASMKSQYGDSMVPAFFTKQE 446

Query: 458 ENQLRTQLVKRPASESVDLIRGAYNTLSDSDKEGVRSSFAHIEDNGLSAVVRLSSEFSDD 517
             +    +   P  + + ++      LS  +   VRS    +  NG   +   S     +
Sbjct: 447 AMEFSRVVQDAPVKDQMRMLSIINGQLSKDNANAVRS---QLMGNGGGVLAVASDALDSN 503

Query: 518 AKNAAMVILSGMKHQKDTETRYNTDHKSNKFDSLYDSYINT----PLTKLEQSTAGGNFN 573
               A  IL G    K+             F S  D+  +      +     ++      
Sbjct: 504 QPYVAEKILMGRNALKEVP---------EAFKSW-DTDASPLVLSEIGNAYSASP-ATMG 552

Query: 574 KDKEAIKLYLLGSMKDSGNY--TLNRVRVSDAMQIVLGNTPVNINESMLMPPRGMSKTDF 631
           +  E+IK        + G++  T+N  R+   ++ V G      + +++ P R M +  F
Sbjct: 553 QVMESIKAAYAAQTVNEGDFSGTINSKRLKSVIKEVTGGLIKIGSSTIVSPDRNMDENKF 612

Query: 632 ED 633
           + 
Sbjct: 613 DS 614


>gi|212710807|ref|ZP_03318935.1| hypothetical protein PROVALCAL_01875 [Providencia alcalifaciens DSM
           30120]
 gi|212686504|gb|EEB46032.1| hypothetical protein PROVALCAL_01875 [Providencia alcalifaciens DSM
           30120]
          Length = 913

 Score = 52.5 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 63/416 (15%), Positives = 144/416 (34%), Gaps = 31/416 (7%)

Query: 258 KAIGLAGWDRLDDTKRRRLLEHLSSRDNALNTKLRKETQAQARRIDAQLNHGITVKPSEL 317
           +  G   +D LD++ + + L+     D     +L+ E         A   +G+    +  
Sbjct: 397 RLTGSVAFDALDESDQAKYLKQAEQMDKQRQQQLQIELGTTISDSYAAWENGLDAPNAP- 455

Query: 318 IPLEDYTQAYGVEQGTELYNLQQFKSVAAPDVARIKLMSTFDAKKFLQKIDDEYISNPSL 377
              +    A+G ++GT +    +     A  ++  K M+    +  L  I  +   +   
Sbjct: 456 -SEKTIISAFGYDKGTAMIADMREAKRYAGLISAAKDMTPQAQRSLLNSIMPDPSES--- 511

Query: 378 SLASTMMA-TKYKEILEKSHRQSMQELNQDAISWGIKYKQ-IDPLRFDTEESFADSLRQR 435
           + AS M    K+ + ++ + +   +  + + +   I+    +DP     +++        
Sbjct: 512 NYASKMQRWEKFGKFVDSNIKAQNKAFSANRLQLSIQNNFPLDPNDKSNQDAADHYFANN 571

Query: 436 AGFVKKIKDDYNLTTSHFNKTEENQLRTQLVKRPASESVDLIRGAYNTLSDSDKEGVRSS 495
                 I+D+ +L       +    + +Q+  + A+ S          +S          
Sbjct: 572 IESSFNIRDENSLNAVAEISSRTGIIPSQIKSKLATGSTSRNPELVIPMSKMYG------ 625

Query: 496 FAHIEDNGLSAVVRLSSEFSDDAKNAAMVILSGMKHQKDTETRYNTDHKSN-KFDSLYDS 554
              I DN  SA+  LS++          +  SGM  +K  +  YN  ++ N +  ++   
Sbjct: 626 --QIFDNNPSAINGLSTDAMAYYGKIYDLTRSGMDSEKAIDIAYNLTYEQNDRTKAIIAE 683

Query: 555 YINTPLTKLEQSTAGGNFNKDKEAIKLYLLGSMKDSG----NYTLNRVRVSDAMQIVLGN 610
            +       E+  A         A+  +   ++   G     Y  +   + DA     G 
Sbjct: 684 QMRDKKYSKERDKAAQGNINSFFALGGFSSPNVTKPGINNREYMRDYQTLYDANFASTGG 743

Query: 611 TPV---NINESMLMPPRGMSKTDFEDRLWYATKDTGEYDPYT-IKYMNVGSGKYMI 662
            P     + ++ +    G++  + +D       +   Y P         G+G ++I
Sbjct: 744 DPDLAKKMTDAQVKKTWGVTSINGKD-------EVMRYAPEAVYGTNESGAGNWII 792


>gi|319409425|emb|CBI83071.1| conserved membrane hypothetical protein [Bartonella schoenbuchensis
           R1]
          Length = 810

 Score = 50.6 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 61/306 (19%), Positives = 104/306 (33%), Gaps = 45/306 (14%)

Query: 19  DAVRDSV-NPQAGLRDLGDALGKATQFLEGIRRDNAFATANTRYTELSFKAV-QDFHDFT 76
           ++ +  +   QA LRD   AL   T   E  R       A   Y     +   +D ++  
Sbjct: 498 ESAQQRLKQAQAALRD---ALRHGTSSEEIERLMANLRQAVNDYISALPEKELKDSNERR 554

Query: 77  NSLDTRDSLQAGDKIKEYV----DGRIRSAYDRFLSSISHRDVRKKFQAQVEHDIRDYHT 132
            +L      Q  D I+E                   ++ H   RK  QA+ E+D ++   
Sbjct: 555 ATLSEDSLSQKLDSIEEMAKLGSSSAAEQLLAEIEQTLDHLQNRKSNQAKEENDHQETQM 614

Query: 133 KGVDIQIGATQRAQEDNLNMTVGLAAAHVLHDPSN--ENYFQRVQSITDHINSLPIDLR- 189
           K    Q+G   R Q++ LN T  L      +D ++   N  ++ +++ D +  L  +L  
Sbjct: 615 KKKLDQLGDLMRRQQEILNDTHHLEKKQ-RYDETDVTSNKEKQSKALEDRLIELQSELSE 673

Query: 190 ----------LKQKLLSEAKEKLNTNQI-------IGAHARDPRVFENF----------M 222
                      +   L EA++K+N  +          +        E+           M
Sbjct: 674 LEKGLSAQGLKQNDALKEAEKKMNLAKTALDNGDYETSMQNQSEALESLRQGAQSVLQEM 733

Query: 223 RAFYKKGHPPKDSTSLSDVSDSARERSLEVVEDVSKAIGLAGWDRLDDTKRRRLLEHLSS 282
           R   KKG    D+    D             +      G+ G  + D  + RR+LE +  
Sbjct: 734 REILKKGDSHNDAHGPQD-----PLGRPLSSQTGQGQEGVGGAQKNDQMRARRILEEIRK 788

Query: 283 RDNALN 288
           R N   
Sbjct: 789 RLNNGR 794


>gi|301119773|ref|XP_002907614.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262106126|gb|EEY64178.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 1549

 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 53/241 (21%), Positives = 92/241 (38%), Gaps = 23/241 (9%)

Query: 82  RDSLQAGDKIKEYVDGRIRSAYDRFLSSISHRDVRKKFQAQVEHDIRDYH----TKGVDI 137
            +  +  D+++  V+ R R+   +FLS    R  R  +  QV   I   H    TK    
Sbjct: 432 GNEFKLLDELQAAVNSRSRTVDSQFLSGFMQRYERHHYIQQVSRFILSMHPELETKQPQA 491

Query: 138 QIGATQRAQEDNLNMTVGLAA---------AHVLHDPSNENYFQRVQSITDHINSLPIDL 188
              AT + Q D+L     +           A + +D    +Y   VQ   D    L   +
Sbjct: 492 IQQATGQKQFDDLTDEEKVCERRRQFHFRVAAIRNDLKKADY--NVQWCKDRQIDLVALI 549

Query: 189 RLKQKLLSEAKEKLNTNQIIGAHARDPRVFENFMRAFYKKGHPPKDSTSLSDVSDSARER 248
           R  +  + E + +L   ++      D  VFEN ++ F+ K         +  + D     
Sbjct: 550 RSAESRILEKQAELERARMFKGPQMDSDVFENGLQRFFTKEL-------IVALEDEVEID 602

Query: 249 SLEVVEDVSKAIGLAGWDRLDDTKRRRLLEHLSSRDNALNT-KLRKETQAQARRIDAQLN 307
            L +++  S+ + +  + R D  +R  LL+ L  R  AL   +      A++ R  A L 
Sbjct: 603 QLYILDTKSEIVLVENYLRADIKRRDTLLKRLKDRQEALGVFESSPRNTAESTRTAATLA 662

Query: 308 H 308
            
Sbjct: 663 K 663


>gi|195433509|ref|XP_002064753.1| GK15035 [Drosophila willistoni]
 gi|194160838|gb|EDW75739.1| GK15035 [Drosophila willistoni]
          Length = 3390

 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 72/227 (31%), Gaps = 31/227 (13%)

Query: 10   LVEAVTPNQDAVRDSVNPQAGLRDLGDALGKATQFLEGIRRDNAFATANTRYTELSFKAV 69
            ++E +      VR+S      LRDLG ++ +          +  FA       +  ++  
Sbjct: 2056 ILEHIKNLSVHVRESH---EELRDLGQSIDQHL--------NQTFAEQGETAVQTIYQLH 2104

Query: 70   QDFHDFTNSLDTRDSLQAGDKIKEYVDGRIRSAYDRFLSSISHRDVRKKFQAQVEHDIRD 129
            +  +   N LD   +L     +   +             +   R+VR+ +  + E     
Sbjct: 2105 KQLNQDLNQLDGSTAL-----LNSTL----------VHQAEQQREVRRHWLPKAEKHADH 2149

Query: 130  YHTKGVDIQIGATQRAQEDNLNMTVGLAAAHVLHDPSNENY--FQRVQSITDHINSLPID 187
               +  +             + M    A  ++    ++     FQ  + + +   +L   
Sbjct: 2150 LLERSNEYARQFQPTRNAARIAMLASSAHTNISKAINDARLASFQAKERVHEAQRTL--Y 2207

Query: 188  LRLKQKLLSEAKEKLNTNQIIGAHARDPRVFEN-FMRAFYKKGHPPK 233
                  ++  A+  L+ +Q +   A       N   +   ++G   +
Sbjct: 2208 PTDGNSMIDRARHSLHRSQQLQQEAIKQMHKSNVLKQKVQRQGQQVE 2254


>gi|223982669|ref|ZP_03632901.1| hypothetical protein HOLDEFILI_00175 [Holdemania filiformis DSM
           12042]
 gi|223965368|gb|EEF69648.1| hypothetical protein HOLDEFILI_00175 [Holdemania filiformis DSM
           12042]
          Length = 1550

 Score = 47.1 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 64/404 (15%), Positives = 121/404 (29%), Gaps = 34/404 (8%)

Query: 11  VEAVTPNQDAVRDSVNPQAGLRDLGDALGKATQ---FLE--GIRRDNAFATANTRYTELS 65
           V  +  N++        Q  L  L D  G A Q    +E   +++D   A A  +    +
Sbjct: 479 VSCIIKNRNHDGIVHWSQLTLVTLADEFGHARQAVGIIEDITLQKDAELAYAKEQQYRKA 538

Query: 66  FKAVQDFHDFTNSLDTRDSLQAGDKIKEYVDGRIRSAYDRFLSSIS----HRDVRKKFQA 121
             A        N  D      +GD     +D   R+ YD+F  +++    H D R+ F  
Sbjct: 539 IAAGACLMIEINLCDNLVEKISGD-WSFLIDEATRTPYDQFQRNVARQQIHPDDRRAFLQ 597

Query: 122 QVEHDIRDYHTKGVDIQIGATQRAQEDNLNMTVGLAAAHVLHDPSNENYFQRVQSITDHI 181
               +           +I    R       M      AH++ DP+ ++   +V      I
Sbjct: 598 TFSREALKAAYNQERREIPLQYRRLSQKRQMVWVETTAHIIQDPATQHL--KVLFFIRDI 655

Query: 182 NSLP--IDLRLKQKLLSEAKEKLNT----NQIIGAHARDPRVFENFMRAFYKKGHPPKD- 234
           +       +   Q         LN      QI      DP+     +     +     D 
Sbjct: 656 DKEKKHELILQYQSQRDSLTGLLNKGSTEAQIQSVLENDPQALHALLVLDIDEFKKINDT 715

Query: 235 -STSLSDVSDSARERSLEVVEDVSKAIGLAGWDRLDDTKRRRLLEHLSSRDNALNTKLRK 293
                 D   S   R +  V   +  +G  G D      +    E +          +R 
Sbjct: 716 FGHLYGDQVLSRIARQIREVFRENDVLGRIGGDEFAILMKNCKTEQI----------VRD 765

Query: 294 ETQAQARRIDAQLNHGITVKPSELIPLED---YTQAYGVEQGTELYNLQQFKSVAAPDVA 350
           + +   +++      G++         +D   + Q Y         + +Q K+     + 
Sbjct: 766 KAEQLCQKLTTLFADGVSCSIGVSFFAKDGTYFYQLYQNADIALYQSKRQGKNQVQFYLP 825

Query: 351 RIKLMSTFDAKKFLQKIDDEYISNPSLSLASTMMATKYKEILEK 394
            +K  S       + ++  E     +  +   + +    E L  
Sbjct: 826 SMKQESWTVNSTEIDELRTEMPVIAAPEMEEHLTSQ-LLEELND 868


>gi|194761028|ref|XP_001962734.1| GF14282 [Drosophila ananassae]
 gi|190616431|gb|EDV31955.1| GF14282 [Drosophila ananassae]
          Length = 3399

 Score = 47.1 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 49/349 (14%), Positives = 115/349 (32%), Gaps = 56/349 (16%)

Query: 28   QAGLRDLGDALGKATQFLEGIRRDNAFATANTRYTE-------LSFKAVQDFHDFTNSLD 80
            Q  +R+LG  + ++ Q +  +    A    +  Y E       L+ +     ++  N LD
Sbjct: 2069 QEHVRNLGLRVTESHQDIRDLNLQIA-KQLDPDYLERGEGMVRLTLQKQLVLNEHLNRLD 2127

Query: 81   TRD---SLQAGDKIKEYVDGRIRSAYDRFLSSISHRDVRKKFQAQVEHDIRDYHTKGVDI 137
                  +   G K+++                   R+VRK +  + E   R    +  + 
Sbjct: 2128 GSAVMLNATLGVKLEQ------------------QREVRKHWLPKAEKHARHLQDRSNEY 2169

Query: 138  QIGATQRAQEDNLNMTVGLAAAHVLHDPSNENY-----------FQRVQSITDH---INS 183
                        + M    A +++    ++               QR    +D    I+ 
Sbjct: 2170 ARQFQPTRNGARIAMLASSAHSNITKAINDARVASILAKEGVYEAQRTLYPSDGGSMIDR 2229

Query: 184  LPIDLRLKQKLLSEAKEKLNTNQII--GAHARDPRVFENFMRAFYKKGHPPKDSTSLSDV 241
                L   ++L  EA ++++ + ++    H ++ RV       F         S  L  +
Sbjct: 2230 AKHSLYRSKQLQQEALKQMHKSNVLKDKLHRQEQRVEGIKATIFDAGRRTNVISGQLQGL 2289

Query: 242  SDSARERSLEVVEDVSKAIGLAGWDRLDDTKRRRLLEHLSSR---------DNALNTKLR 292
            ++++  R  +   D+++  G     R D    R + E + +          D  +   + 
Sbjct: 2290 AENSARRQAKESLDLAERTGKQ--MRADLQMARTMQESIQNMRKSFAALEPDWEIKLGMA 2347

Query: 293  KETQAQARRIDAQLNHGITVKPSELIPLEDYTQAYGVEQGTELYNLQQF 341
            +E  +  +      N  ++    +    ++  +A+      +L  L+  
Sbjct: 2348 QENISLTKTNLRLANVSLSYLELQAAKEQEVFEAWNNSMAQQLQQLRDL 2396


>gi|325000921|ref|ZP_08122033.1| von Willebrand factor type A [Pseudonocardia sp. P1]
          Length = 652

 Score = 46.8 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 50/344 (14%), Positives = 115/344 (33%), Gaps = 27/344 (7%)

Query: 8   KPLVEAVTP---NQDAVRDSVNPQAGLRDLGDALGKATQFLEGIRRDNAFATANTRYTEL 64
           + ++E  +P    Q+ +R  ++ + GL DL   + +  + L+   R +          + 
Sbjct: 38  RDVMEGSSPRQALQELMRRGLDGRRGLDDLTRRVWEQRRDLQRDNRIDGTLQEVRELLQR 97

Query: 65  SFKAVQDFHDFTNSLDTRDSLQAGDKIKEYVDGRIRSAYDRFLSSISHRDVRKKFQAQVE 124
           +  A Q+     +S D R      D +     G +R        S   R+   + +  + 
Sbjct: 98  ALDAEQESLRNEDSDDARFREMQLDALPSDTGGAVRELGSYDWRSADAREAYSEIRDLLG 157

Query: 125 HDIRDYHTKGVDIQIGATQRAQEDNLNMTVGLAAAHVLHDPSNENYFQR-VQSITDHINS 183
            ++ D   +G+   +        + +N  +      + H    E+  +R  + +  H + 
Sbjct: 158 REMLDQRFEGMKQALEGATPEDVERINEMLDDLNDLLEHHARGEDTTERFAEFMGKHGDH 217

Query: 184 LPIDLRLKQKLLSEAKEKLNTNQ-IIGAHARDPRV-FENFMRAFYKKGHPPKDSTSLSDV 241
            P + +  ++L+     +    Q ++ + + + R       +  +      +    L   
Sbjct: 218 FPENPQNTEELVDALAARSAAAQRMMNSMSAEQRAELAELAQQAFGDPRLAQSLARLD-- 275

Query: 242 SDSARERSLEVVEDVSKAIGLAGWDRLDDTKRRRLLEHLSSRDNALNTKLRKETQAQARR 301
              A+ + +   ED S      G + +   +  R LE L   D       +    A+   
Sbjct: 276 ---AQLQGMRSGEDWSGEGNFRGDNPMGMGEATRALEQLGQLDALAEQLAQSYPGARM-- 330

Query: 302 IDAQLNHGITVKPSELIPLEDYTQAYGVEQGTELYNLQQFKSVA 345
                         E I L+  T+  G E   +   L + +   
Sbjct: 331 --------------EDIDLDALTEMLGPEAAADARTLAELEREL 360


>gi|15887953|ref|NP_353634.1| transcriptional regulator [Agrobacterium tumefaciens str. C58]
 gi|15155555|gb|AAK86419.1| transcriptional regulator [Agrobacterium tumefaciens str. C58]
          Length = 471

 Score = 45.2 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 68/217 (31%), Gaps = 32/217 (14%)

Query: 135 VDIQIGATQRAQEDNLNMTVGLAAAHVLHDPSNENYFQRVQSITDHINSLPIDLRLKQKL 194
             I  G   R   + L +T    A  +   PS  N  +R Q        L +    K  L
Sbjct: 4   NKIFAGPRVRRIRNGLALTQTAMAEALAISPSYLNLIERNQRPLTVQLLLKLASVYKVDL 63

Query: 195 LSEAKEKLNTNQIIGAHARDPRVFENFMRAFYKKGHPPKDSTSLSDVSDSARERSLEV-- 252
                E   +   +     DP +              P++   ++D + +A    L++  
Sbjct: 64  DDLQGESAGSAGQLREVFADPLLVGEVPS--------PQELIEVADAAPNAASGVLKLYR 115

Query: 253 --------VEDVSKAIGLAGWDRLDDTKRRRLLE--HL------------SSRDNALNTK 290
                   + D+S  +   G +    + R  + E  H+            ++ +      
Sbjct: 116 AYREQAQRLSDLSDLLAREGHETALSSTRLPIDEVRHVFENRPAYFHAIDAAAEELHKQL 175

Query: 291 LRKETQAQARRIDAQLNHGITVKPSELIPLEDYTQAY 327
              +  A   R   Q NHGI V+   +  + +  + Y
Sbjct: 176 STGDDLASGLRAWLQKNHGIVVRTLPVHAMPNLRRRY 212


>gi|156554052|ref|XP_001599488.1| PREDICTED: similar to CG9170-PA [Nasonia vitripennis]
          Length = 1362

 Score = 44.8 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 55/385 (14%), Positives = 147/385 (38%), Gaps = 39/385 (10%)

Query: 46  EGIRRDNAFATANTRYTELSFKAVQDFHDFTNSLDTRDSLQAGDKIKEYVDGRIRSAYDR 105
           E +++  + +  +  +    F+ V++    + S   + + ++ +    ++D  +R + + 
Sbjct: 509 EHMQQQESRSIDDEEFLPNKFENVKNIDLISKSDSEKTTPRSSESRSSFLD-DLRKSKEI 567

Query: 106 FLSSISHRDVRKKFQAQVEHDIRDYHTKGVDIQIGATQRAQEDNLNMTVGLAAAHVLHDP 165
            + ++   ++R K  A+ E  I +  +     ++  +    ++ +              P
Sbjct: 568 MMENMKKSELRAKKIAEDEARIAENQSWSS--KMLRSLELSKEGIK------------SP 613

Query: 166 SNENYFQRVQSITDHINSLPIDLRLKQKLLSEAKEKLNTNQIIGAHARDPRVFENFMRAF 225
           S+EN    +++I +++     +     K   ++K +   NQ+    +++ +  E  ++  
Sbjct: 614 SSENLMTNLEAIKNNMIKENENEIRIFKQELDSKLEAVKNQLEKEFSKEKQSLEASIQKK 673

Query: 226 ---YKKGHPPKDSTSLSDVSDSARE----------RSLEVVEDVSKAIGLAGWDRLDDTK 272
               +K    K+   +  + +   E            LEV  +  +   L+      D +
Sbjct: 674 LLELRKEMTSKEEHEIKKLIEDMGEVRADNLKKVRNELEVCYEKERQDILSNLKGELDQR 733

Query: 273 RRRLLE----HLSSRDNALNTKLRKETQAQA--RRIDAQLNHGITVKPSELIPL-EDYT- 324
           +R LLE     +S  +N     L  + QA+     I  Q N  I     EL    ++   
Sbjct: 734 KRELLELRSQEISKLENEHERGLDDDKQAKIVEMEITRQHNERIEDFRKELAKEFDNVRA 793

Query: 325 --QAYGVEQGTEL-YNLQQFKSVAAPDVARIKLMSTFDAKKFLQKIDDEYISNPSLSLAS 381
             +A   E+ T++  + ++  +    D    + ++    K+ L +I  +Y  +    +  
Sbjct: 794 DLRAQQREKITKITEDHEKCLADILRDFRVDEGLARKVYKQRLDEIRTDYSKDVENEMKK 853

Query: 382 TMMATKYKEILEKSHRQSMQELNQD 406
              +   +E ++    +  + L +D
Sbjct: 854 HNDSAVRQESVDFEKIRCEKRLLED 878


>gi|256376324|ref|YP_003099984.1| von Willebrand factor type A [Actinosynnema mirum DSM 43827]
 gi|255920627|gb|ACU36138.1| von Willebrand factor type A [Actinosynnema mirum DSM 43827]
          Length = 648

 Score = 44.5 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 54/344 (15%), Positives = 115/344 (33%), Gaps = 31/344 (9%)

Query: 8   KPLVEAVTP---NQDAVRDSVNPQAGLRDLGDALGKATQFLEGIRRDNAFATANTRYTEL 64
           + ++E  +P    ++ +R  +    GL DL   L +    L    R +       R  + 
Sbjct: 31  RDIMEGASPESALRELLRRGLPGGRGLDDLTARLWQKRAALARRNRLDGTLQEVRRLLDE 90

Query: 65  SFKAVQ--DFHDFTNSLDTRDSLQAGDKIKEYVDGRIRSAYDRFLSSISHRDVRKKFQAQ 122
           + +A +   F D  +  D R      D +       +R        S   R+  ++    
Sbjct: 91  ALEAERAALFPDPDD--DARFREAQLDALPTGTAAAVRELSSYDWRSPRARESYERISQL 148

Query: 123 VEHDIRDYHTKGVDIQIGATQRAQEDNLNMTVGLAAAHVLHDPSNENYFQR-VQSITDHI 181
           +  ++ D   +G+   +G   +A  + +   +G   A +    S ++  +R  + +  H 
Sbjct: 149 LGRELMDQRFQGMKQAMGGVGQADVERIQEMLGDLNALLAAHASGQDVRERFAEFMRRHG 208

Query: 182 NSLPIDLRLKQKLLSEAKEKLNTNQ-IIGAHARDPRV-FENFMRAFYKKGHPPKDSTSLS 239
              P D +   +L+     +    Q ++ +   + R       +  +  G       S  
Sbjct: 209 EFFPEDPKDVDELVDVLAARSAAAQRVMNSMTEEQRAELSALSQQAFG-GSQVGSQLSAL 267

Query: 240 DVSDSARERSLEVVEDVSKAIGLAGWDRLDDTKRRRLLEHLSSRDNALNTKLRKETQAQA 299
           D    +  R L   ED   +    G + L   +  + +  L+  D               
Sbjct: 268 D----SLLRGLRPGEDWDSSARFRGDNPLGLGEAAQAMADLAELD--------------- 308

Query: 300 RRIDAQLNHGITVKPSELIPLEDYTQAYGVEQGTELYNLQQFKS 343
            ++  QL+        E I L+   +  G E G +   L + + 
Sbjct: 309 -QLAEQLSQSYPGARLEDIDLDALVRQLGPEAGVDARALAELER 351


>gi|227355849|ref|ZP_03840242.1| conserved hypothetical protein [Proteus mirabilis ATCC 29906]
 gi|227164168|gb|EEI49065.1| conserved hypothetical protein [Proteus mirabilis ATCC 29906]
          Length = 1027

 Score = 44.1 bits (102), Expect = 0.079,   Method: Composition-based stats.
 Identities = 58/423 (13%), Positives = 130/423 (30%), Gaps = 44/423 (10%)

Query: 259 AIGLAGWDRLDDTKRRRLLEHLSSRDNALNTKLRKETQAQARRIDAQLNHGITVKPSELI 318
             G A +D LD+  + + L            +L+++   +     A    G+    +   
Sbjct: 494 LTGSAAFDALDEADQAKYLRQAEQLRKQKQGELQQQLGTRVADSYAAWERGLEAPNAP-- 551

Query: 319 PLEDYTQAYGVEQGTELYNLQQFKSVAAPDVARIKLMSTFDAKKFLQKIDDEYISNPSLS 378
             ++   A+G ++G+ +    Q     A  ++  K MS    +  L +I  +       S
Sbjct: 552 THDELISAFGYDKGSAMSADMQEAKRYAGFMSAAKEMSPQAQQALLSQIRPQTGEVNYES 611

Query: 379 LASTMMATKYKEILEKSHRQSMQELNQDAISWGIKYKQ-IDPLRFDTEESFADSLRQRAG 437
                   K+ + +E + ++  ++   + +   I+    +DP   + +++  D   +   
Sbjct: 612 KIQRW--EKFGKFVEGNIKEQDKQFAANRLQLSIQNNFPLDPNDKNNQQAADDYFEKHIQ 669

Query: 438 FVKKIKDDYNLTTSHFNKTEENQLRTQLVKRPASESVDLIRGAYNTLSDSDKEGVRSSFA 497
               ++DD +L            + +Q+       +          ++    +   ++ A
Sbjct: 670 QSFNLRDDNSLNAVAELTARTGIIPSQVKSVLNMGATSKDPEVVLPIAKMYGQIFDNNPA 729

Query: 498 HIEDNGLSAVVRLSSEFSDD----AKNAAMVILSGMKHQKDTETR-----------YNTD 542
              D   S +   S  +S        + A+        ++D  T+           Y  D
Sbjct: 730 SATDIPSSTMAYYSKVYSLSRAGMPDDKAVETAFKTTFEQDERTKQMIASQIRDKGYIKD 789

Query: 543 HKS------NKFDSLYDSYINTP----------LTKLEQSTAGGNFN---KDKEAIKLYL 583
                    N F   Y  + +              +  Q+    NF     D E  K   
Sbjct: 790 RDKAAQSNINDFYPWYKPFSSPSVSKPGTQNGAYLRDYQTLYDANFAETGGDAELAKKMT 849

Query: 584 LGSMKDS---GNYTLNRVRVSDAMQIVLGNTPVNINESMLMPPRGMSKTDF-EDRLWYAT 639
              +K +    N   +   +  A + V G    +   + +       K          A+
Sbjct: 850 NAQIKRTWAVSNINGSEEVMRYAPEAVYG-INESGAGNWIAGQWEEEKKQLMSKSFGGAS 908

Query: 640 KDT 642
            DT
Sbjct: 909 SDT 911


>gi|254573256|ref|XP_002493737.1| Myosin-like protein associated with the nuclear envelope [Pichia
            pastoris GS115]
 gi|238033536|emb|CAY71558.1| Myosin-like protein associated with the nuclear envelope [Pichia
            pastoris GS115]
 gi|328354439|emb|CCA40836.1| Nucleoporin nup211 [Pichia pastoris CBS 7435]
          Length = 1688

 Score = 43.7 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 43/334 (12%), Positives = 115/334 (34%), Gaps = 25/334 (7%)

Query: 198  AKEKLNTNQIIGAHARDPRVFENFMRAFYKKGHPPKDSTSLSDVSDSARERSLEVVEDVS 257
              +  NT+Q+I             ++    +    +   S+++          E+ +   
Sbjct: 1175 TGDNDNTSQLISFLRDQKDHVSRELQQSQMEVTRLRQQLSIAEE---------EIEQSKI 1225

Query: 258  KAIGLAGWDRLDDT-----KRRRLLEHLSSRDNALNTKLRKETQAQARRIDA---QLNHG 309
            +A  L G+++L +       +   L  + S     NT LR E Q+Q  RI A   QL   
Sbjct: 1226 EAEKLEGYEKLSNELQGEITKSAELSKIVSELRQGNTDLRNENQSQVNRITALYHQLEQE 1285

Query: 310  ITVKPSELIPLEDYTQAYGVEQGTELYNLQQFKSVAAPDVARIKLMSTFDAKKFLQKIDD 369
                    I ++        +      N +Q +      +  +  + +   ++++++ + 
Sbjct: 1286 KAKNEPFEIQIKQLKVEVETKGKEATMNQEQLEYWKTRSLNLLNEVGSIGNEEYVKEAES 1345

Query: 370  EYISNPSLSLASTMMATKYKEILEKSHRQSMQELNQDAISWGIKYKQIDPLRFDTEESFA 429
                   +    + ++ ++   L+   +  ++   +D       Y+ +     +  ++ A
Sbjct: 1346 LKEKLAEVEGKHSELSARFNR-LKDEAQSKLKRRKED-------YEMLRREHEELRKTLA 1397

Query: 430  DSLRQRAGFVKKIKDDYNLTTSHFNKTEENQLRTQLVKRPASESVDLIRGAYNTLSDSDK 489
            D+  + +   +K+      + S   + E+ + +       + + VD ++     +     
Sbjct: 1398 DTNAEVSSLTEKLNLSSKTSESLTQELEQLKSKQTSADLNSEKHVDELKKKQEEVERLLA 1457

Query: 490  EGVRSSFAHIEDNGLSAVVRLSSEFSDDAKNAAM 523
            E  +     ++    S  V    +   +AK A  
Sbjct: 1458 ENNKLKETQVQSPETSEEVEALKKELQEAKEAVK 1491


>gi|221102272|ref|XP_002170393.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 898

 Score = 43.3 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 40/256 (15%), Positives = 84/256 (32%), Gaps = 26/256 (10%)

Query: 42  TQFLEGIRRDNAFATANTRYTELSFKAVQDFHDFTNSLDTRDSLQAGDKIKEYVDGRIRS 101
           T   +  + D       T Y +L  K   + +    SL    S  + DK  E +   +  
Sbjct: 389 TDIEDNFKEDTKLLLCQTEYKQL--KDEFELYKKKQSL---SSHPSKDKNDELLQKIVE- 442

Query: 102 AYDRFLSSISHRDVRKKFQAQVEHDIRDYHTKGVD-IQIGATQRAQEDNLNMTVGLAAAH 160
               +   I + +   +      +     H + V  +QI  T + +ED L     L   H
Sbjct: 443 ----YKKKIDYLESNNEQLVLKNNLEEKEHLRIVSTLQIQFT-KLEEDCLQKIEQLKVEH 497

Query: 161 VLHDPSNENYFQRVQSITDHINSLPIDLRLKQKLLSEAKEKLNTNQIIGAHARDPRVFEN 220
           + +    EN  ++ +     ++ L        +L  +  E     Q      + P+    
Sbjct: 498 LKNIELIENELKKQR--IRTLDLLAEKDIEIDRLREKQYENEYLLQ------QTPK---- 545

Query: 221 FMRAFYKKGHPPKDSTSLSDVSDSARERSLEVVEDVSKAIGLAGWDRLDDTKRRRLLEHL 280
             +  +K     K+ + + ++  ++   S      +     L    R+D +  R  LE +
Sbjct: 546 -SQEVFKFP-EFKEKSVIDEMLQNSPTMSPTKRATMVHYTELLEQQRIDLSSYRAQLEDV 603

Query: 281 SSRDNALNTKLRKETQ 296
            +       +  +  Q
Sbjct: 604 KNALKDSERREDQLVQ 619


>gi|121602289|ref|YP_988395.1| hypothetical protein BARBAKC583_0057 [Bartonella bacilliformis
           KC583]
 gi|120614466|gb|ABM45067.1| conserved hypothetical protein TIGR02302 [Bartonella bacilliformis
           KC583]
          Length = 805

 Score = 43.3 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 57/302 (18%), Positives = 110/302 (36%), Gaps = 33/302 (10%)

Query: 5   TTNKPLVEAVTPNQDAVRDSVNPQAGLRDLGDALGKATQFLEGIRRDNAFATANTRYTEL 64
           +  + L +A T  +DA+R   +     R + D L +A    + IR     A  N+     
Sbjct: 497 SAQQRLKQAQTALRDALRRGASGAEIERLMAD-LRQAMH--DYIRALAEKAPENSDSNNK 553

Query: 65  SFKAVQDFHDFTNSLDTRDSLQAGDKIKEYVDGRIRSAYDRFLSSISHRDVRKKFQAQVE 124
           +  +    H   +S++    + +    ++ +D            ++ H  V+K  + Q +
Sbjct: 554 ANLSEDSLHKKLDSIEQMAQIGSSSSAEQLLD--------EIEQTLDHLRVQKSNRDQEQ 605

Query: 125 HDIRDYHTKGVDIQIGATQRAQEDNLNMTVGLAAAHVL----HDPSNENYFQRVQSITDH 180
            + +    K    ++G   R Q++ LN T  L              +E   +R   +   
Sbjct: 606 KNTQTTKMKKTIDKLGDVMRRQQEILNDTHRLETEKRRGETVTQEQSEALVERQAQLQSE 665

Query: 181 INSLPIDLR----LKQKLLSEAKEKLNTNQIIGAHA-------RDPRVFENFMR----AF 225
           ++ L  +L      K  +L EA+EK+N+ +    H            V E+  +      
Sbjct: 666 LSVLEKELSEQGFEKGGVLKEAEEKMNSAKAALGHGNHETSVKNQSDVLESLRQGAQNIL 725

Query: 226 YKKGHPPKDSTSLSDVSDSAR--ERSLEVVEDVSKAIGLAGWDRLDDTKRRRLLEHLSSR 283
            K     K S  + + ++S     R L    D  +  G       D  + R++LE +  R
Sbjct: 726 QKMREALKQSEDMQNAAESQDPLGRPLSSDSDQGQN-GKTMSQEGDKAQARQILEEIRRR 784

Query: 284 DN 285
            N
Sbjct: 785 LN 786


>gi|197101129|ref|NP_001126386.1| FCH and double SH3 domains protein 1 [Pongo abelii]
 gi|55731282|emb|CAH92355.1| hypothetical protein [Pongo abelii]
          Length = 598

 Score = 42.9 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 58/413 (14%), Positives = 120/413 (29%), Gaps = 47/413 (11%)

Query: 22  RDSVNPQAGLRDLGDALGKATQFLEGIRRDNA--FATANTRYTELSFKAVQDFHDFTNSL 79
           +  +      RDL    G++ +  E + R        A     +      +         
Sbjct: 96  QTRLQASDRYRDLAGGTGRSAK--EQVLRKGTENLQRAQAEVLQSVRDLSR--SRKLYGQ 151

Query: 80  DTRDSLQAGDKIKEYVDGRIRSAYDRFLSSISHRDVRKKFQAQVEHDIRDYHTKGVDIQI 139
             R    A +K  +      RS +  F S  S + +  K  AQ     +       +  +
Sbjct: 152 RERVWALAQEKAADVQARLNRSDHGIFHSRTSLQKLSTKLSAQSAQYSQQLQAARNEYLL 211

Query: 140 GA-TQRAQEDNLNMTVGLAAAHVLHDPSNENYFQRVQSITDHINSLPIDLRLKQKLLSEA 198
                 A  D+       A    L    +E+    + S++         +        + 
Sbjct: 212 NLVATNAHLDHYYQEELPALLKALVSELSEHLRDPLTSLSRTELEATEVILEHAHRGEQT 271

Query: 199 KEKLNTNQIIGAHARDPRVFENFMRAFYKKGHPPKDSTSLSDVSDSARERSLEVVEDVSK 258
             +++  Q +    ++P VF            PP+               + +V      
Sbjct: 272 TSQVSWEQDLKLFLQEPGVFS---------PTPPQ---------QFQPAGTDQVCVLEWG 313

Query: 259 AIGLAGWDRLDDTKRRRLLEHLSSRDNALNTKLRKETQAQARRIDAQLNHGITVKPSELI 318
           A G+AG   L+  K  + L   ++RD  +  ++ +E +    R+       ++   +E  
Sbjct: 314 AEGVAGKSGLE--KEVQRLTSRAARDYKIQDEVEQERRLSEARLS---QRDLSPT-AEDA 367

Query: 319 PLEDYTQAYGVEQGTELYNLQQFKSVAAPDVARIKLMSTFDAKKFLQKIDDEYISNPSLS 378
            L D+ +     +  E    Q   +   P  A +        +  L   + E++      
Sbjct: 368 ELSDFEECEETGELFEEPAPQALATRPLPCPAHVVFRYQAGREDELTITEGEWLEIIEEG 427

Query: 379 LASTMMATKYKEILEKSHRQSMQELNQDAISWGIKYKQIDPLRFDTEESFADS 431
            A                   ++  NQ      +  + ++       ES  DS
Sbjct: 428 DADEW----------------VKARNQHGEVGFVPERYLNFPDLSLPESSQDS 464


>gi|118385975|ref|XP_001026110.1| hypothetical protein TTHERM_00971900 [Tetrahymena thermophila]
 gi|89307877|gb|EAS05865.1| hypothetical protein TTHERM_00971900 [Tetrahymena thermophila SB210]
          Length = 2536

 Score = 42.9 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 85/270 (31%), Gaps = 34/270 (12%)

Query: 27   PQAGLRDLGDALGKATQFLEGIRRDNAFATANTRYTELSFKAVQDFHDFTNSLDTRDSLQ 86
            P   L+++   + ++   L  + +       N    E   +  Q F     +        
Sbjct: 2241 PNEYLKNVQGDINESNATLNQVEK-------NQEDNEKQIELKQIFSKEIQASQNNHPSP 2293

Query: 87   AGDKIKEYVDGRIRSAYDRFLSSISHRDVRKKFQAQVEHDIRD-YHTKGVDIQIGATQRA 145
                 ++   G+I+  Y    +  +  +   + Q Q E    D Y+       +G   + 
Sbjct: 2294 LYKHTQDK-QGQIKPIYGNSKTIFNQTE-SLQLQNQDEKSNADQYYVDSNKFLMGIQPKK 2351

Query: 146  QEDNL----NMTVGLAAAH---VLHDPSNE-NYFQRVQSITDHINSLPIDLRLKQKLLSE 197
               ++    N      + +   +  + ++E  Y Q+ +   +       +LR      + 
Sbjct: 2352 TLSDINFQQNQNAYYKSNNKKQLYIEEADEIQYTQQDEKSENLNEQNEFNLRSPHYTENS 2411

Query: 198  AKEKLNT-NQIIGAHARDPRVFENFMRAFYKKGHPPKDSTSLSDV----------SDSAR 246
             +      +  I     +     NF +  +KK    +D+    D+           +S +
Sbjct: 2412 TQRNQYVFDSKINLLKDN-----NFSQQNHKKDQRQQDTIIEEDIYSLQHKIKDDQESQK 2466

Query: 247  ERSLEVVEDVSKAIGLAGWDRLDDTKRRRL 276
             + + +     K    AG   LD+   + +
Sbjct: 2467 GQQISIQIIEEKKNNNAGKRDLDNQSNKII 2496


>gi|291405461|ref|XP_002718960.1| PREDICTED: myosin 18A [Oryctolagus cuniculus]
          Length = 2038

 Score = 42.5 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 54/445 (12%), Positives = 134/445 (30%), Gaps = 33/445 (7%)

Query: 69   VQDFHDFTNSLDTRDSLQAGDKIKEYVDGRIRSAYDRFLSSISHRDVRKKFQAQVEHDIR 128
              DF       +  D L+   + K  ++ R+         S       ++   Q++   +
Sbjct: 1380 EVDFTKKRLQQEFEDKLEVEQQSKRQLERRLGDLQADSDES-------QRALQQLKKKCQ 1432

Query: 129  DYHTKGVDIQI---GATQRAQEDNLNMTVGLAAAHVLHDPSNENYFQRVQSITDHINSLP 185
                +  D ++   G   R  E         +     HD +     QR +   +    L 
Sbjct: 1433 RLTGELQDTKLHLEGQQVRNHELEKKQRRFDSELSQAHDEAQREKLQREKLQREKDMLLA 1492

Query: 186  IDLRLKQKLLSEAKEKLNTNQIIGAHARDPRVFENFMRAFYKKGHPPKDSTSLSDVSDSA 245
                LKQ+L  +  +     Q + +   + +   +            KD  SL+ V    
Sbjct: 1493 EAFSLKQQLEEKDMDIAGFTQKVVSLEAELQDISS---------QESKDEASLAKVKKQL 1543

Query: 246  RERSLEVVEDVSKAIGLAGWDRLDDTKRRRLLEHLSSRDNALNTKLRKE----------T 295
            R+   +V +   +    AG  ++ +  + RL   +       + ++              
Sbjct: 1544 RDLEAKVKDQEEELDEQAGTIQMLEQAKLRLEMEMERMRQTHSKEMESRDEEVEEARQSC 1603

Query: 296  QAQARRIDAQLNHGITVKPSELIPLEDYTQAYGVEQGTELYNLQQFKSVAAPDVARIKLM 355
            Q + ++++ QL      K   L    +                 + +     D+ R K +
Sbjct: 1604 QKKLKQMEVQLEEEYEDKQKVLRDKRELESKLTALSDQVSRRDLESEKRLRKDLKRTKAL 1663

Query: 356  STFDAKKFLQKIDDEYISNPSLSLASTMMATKYKEILEKSHRQSMQELNQDAISWGIKYK 415
                        +          L + +  +++        R++M+   +D     ++  
Sbjct: 1664 LADAQVMLDHLKNSAPSKREIAQLKNQLEESEFTCAAAVKARKAMEVEIEDLH---LQID 1720

Query: 416  QIDPLRFDTEESFADSLRQRAGFVKKIKDDYNLTTSHFNKTEENQLRTQLVKRPASESVD 475
             I   +   EE  +   R++     ++++D         K +    +        ++   
Sbjct: 1721 DIAKTKTALEEQLSRLQREKNEIQNRLEEDQEDMNELMKKHKAAVAQASRDLAQMNDLQA 1780

Query: 476  LIRGAYNTLSDSDKEGVRSSFAHIE 500
             +    N      +E +++  + +E
Sbjct: 1781 QLE-EANKEKQELQEKLQALQSQVE 1804


>gi|89100713|ref|ZP_01173569.1| hypothetical protein B14911_02484 [Bacillus sp. NRRL B-14911]
 gi|89084588|gb|EAR63733.1| hypothetical protein B14911_02484 [Bacillus sp. NRRL B-14911]
          Length = 520

 Score = 42.1 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 63/355 (17%), Positives = 125/355 (35%), Gaps = 58/355 (16%)

Query: 34  LGDALGKATQFLEGIRRDN------AFATANTRYTELSFKAVQDFHDFTNSLDTRDSLQA 87
           +  A   A Q LE  RR+       A   A     +L  +A Q+  D  N L  +++   
Sbjct: 33  IAGAKNAAEQILEDARREADASKKEALLEAKDEIHKLRTEAEQEVRDRRNELQKQENRLL 92

Query: 88  GDKIKEYVDGRIRSAYDRFLSSISHRDVRKKFQAQVEHDIRDYHTKGVDIQIGATQRAQE 147
               +E +D +  S  D+  S +  RD     + Q        H + ++ ++    RAQ+
Sbjct: 93  QK--EENLDRKDESL-DKRESILEKRDDSLNKKQQ--------HIEEMESKVDEMVRAQQ 141

Query: 148 DNLNMTVGLA---AAHVLHDPSNENYFQRVQSITDHINSLPIDLRLKQKLLSEAKEKL-- 202
             L    GL    A  ++ D   +     +      I     + R K++   +AKE L  
Sbjct: 142 SELERISGLTREEAKSIILDRVEQEVAHDI-----AIMVKETENRAKEEADKKAKEVLSL 196

Query: 203 --------NTNQIIGAHARDP-RVFENFMRAFYKKGHPPKDSTSLSDVSDSARERSLEVV 253
                   +  +   +    P    +  +     +     ++ +  D+          ++
Sbjct: 197 AIQRCAADHVAETTVSVVNLPNDEMKGRIIGREGRNIRTLETLTGIDL----------II 246

Query: 254 EDVSKAIGLAGWDRLDDTKRRRLLEHL-------SSRDNALNTKLRKETQAQARRIDAQL 306
           +D  +A+ L+G+D +     R  LE L        +R   +  K R+E     R I  Q 
Sbjct: 247 DDTPEAVILSGFDPIRRETARLALEKLVQDGRIHPARIEEMVDKARREVDEHIREIGEQT 306

Query: 307 N-----HGITVKPSELIPLEDYTQAYGVEQGTELYNLQQFKSVAAPDVARIKLMS 356
                 HG+     +++    +  +YG         + Q   + A ++   + ++
Sbjct: 307 TFEVGVHGLHPDLIKILGRLKFRTSYGQNVLKHSMEVAQLSGLLAAELGEDETLA 361


>gi|311112058|ref|YP_003983280.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa ATCC 17931]
 gi|310943552|gb|ADP39846.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa ATCC 17931]
          Length = 695

 Score = 41.8 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 57/388 (14%), Positives = 116/388 (29%), Gaps = 44/388 (11%)

Query: 107 LSSISHRDVRKKFQA---QVEHDIRDYHTKGVDIQIGATQRAQEDNLN--MTVGLAAAHV 161
           L  +   + R+K  A   Q   +    +    + + GAT    E+ L+   TV  ++   
Sbjct: 3   LECVGESERRRKACARTPQQNEEKVTENIPAENAEQGATLGNTEETLSVEKTVEESSLET 62

Query: 162 LHDPSNENYFQRVQSITDHINSLPIDLRLKQKLLSE-AKEKLNTNQIIGA----HARDPR 216
              P+NE          D   S+  + R       +  ++  + +   G        DPR
Sbjct: 63  GEKPTNEK--------ADAAESMTAEPREDNAATKKNTEDNTHESHEEGTRFTDLGLDPR 114

Query: 217 VFENFMRAFYKKGHPPKDSTSLSDVSDSARERSLEVVEDVSKAIGLAGWDRLDDTKRRRL 276
           V        Y+K  P ++ T              +VV       G      L    R   
Sbjct: 115 VLSALEEVGYEKPSPIQEQTIP------LLLDGKDVVGLAQTGTGKTAAFALPALSRMAE 168

Query: 277 LEHLSSRDNALNTKLRKETQAQARRIDAQLNHGITVKPSELIPLEDYTQAYGVEQGTELY 336
           L  +    N ++   +    A  R +  Q+    +   + +          G   G +L 
Sbjct: 169 LADI----NGVSRDTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGGSPYGPQLA 224

Query: 337 NLQQFKSVA--------------APDVARIKLMSTFDAKKFLQKIDDEYISNPSLSLAST 382
            L++   V               + D++ ++ +   +A + L+    E +          
Sbjct: 225 GLRRGAQVVVGTPGRVIDHLEKGSLDLSNLQYLVLDEADEMLRMGFAEDVETILEGTPDA 284

Query: 383 MMATKYKEILEKSHRQSMQELNQDAISWGIKYKQIDPLRFDTE--ESFADSLRQRAGFVK 440
                +   +  S R+  Q+   D     +K K            +            V 
Sbjct: 285 KQVALFSATMPNSIRKIAQQYLNDPTEVRVKTKTTTGANIRQRYMQVMHSHKLDAMTRVL 344

Query: 441 KIKDDYNLTTSHFNKTEENQLRTQLVKR 468
           ++++   +      K E  ++  +L  R
Sbjct: 345 EVENYDGIIVFVRTKKETEEVADKLKAR 372


>gi|310778825|ref|YP_003967158.1| phage tail tape measure protein, TP901 family [Ilyobacter
           polytropus DSM 2926]
 gi|309748148|gb|ADO82810.1| phage tail tape measure protein, TP901 family [Ilyobacter
           polytropus DSM 2926]
          Length = 793

 Score = 41.4 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 83/581 (14%), Positives = 179/581 (30%), Gaps = 79/581 (13%)

Query: 96  DGRIRSAYDRFLSSISHRDVRKKFQAQVEHDIRDYHTKGVDIQIGATQRA----QEDNLN 151
              ++   D  L   S      K +A  E   + + +   + +    Q+         +N
Sbjct: 26  SKEMKKLSDEMLKLKSTNRHISKLKASEEKLEKQFASGREEYK---RQQRELFGTSKKVN 82

Query: 152 MTVGLAAAHVLHDPSNENYFQRVQSITDHINSLPIDLRLKQKLLSEAKE-KLNTNQIIGA 210
                         S  N F++ Q   +H+     +   K+ L    ++ K   N+    
Sbjct: 83  DLRRAIEKTKKPSKSMINEFKKAQKAENHLKETTEN--QKKALTDMMRQMKAAKNETKRY 140

Query: 211 HARDPRVFENFMRAFYKKGHPPKDSTSLSDVSDSARERSLEVVEDVSKAIGLAGWDRLDD 270
                 + ++ M+   ++    K+  +L     +    +       + A+G+A    +DD
Sbjct: 141 SQSQEELAKS-MKKVEERHKKLKEYENLKKSVSNNAGGTFARSAGQAVALGVAVKFAIDD 199

Query: 271 TKRRRLLEHLSSRDNALNTKLRKETQAQARRIDAQLNHGITVKPSELIPLEDYTQAYGVE 330
            +    +   +        K ++E +   + I            SE+  +         +
Sbjct: 200 EEAFADVRKTTGLAGEEAKKFQRELKKATKDIPKF--------NSEIYEIAAAA----GQ 247

Query: 331 QGTELYNLQQFKSVAAPDVARIKLMSTFDAKKFLQKIDDEYISNPSLSLASTMMATKYKE 390
            G  L  + QF S  A  V+    M    A + L                       ++E
Sbjct: 248 AGINLQEIPQFTSDTA-KVSVAFDMEAGKAGETLAT---------------------WRE 285

Query: 391 ILEKSHRQSMQELNQDAISWGIKYKQIDPLRFDTEESFADSLRQRAGFVKKIKDDYNLTT 450
             + S  + ++    D ++      ++ P +     +    L + A F +        T 
Sbjct: 286 AFKMSQSEVIK--LADQMNLLGDSIKVAPAQVAEIATQVGGLGRMANFTEAQTSALGGTL 343

Query: 451 SHFNKTEENQLRTQLVKRPASESVDLIRGAYNTLSDSDKEGVRSSFAHIEDNGLSAVVRL 510
                 +     T + K             Y T++  D     S+ +           +L
Sbjct: 344 IALGVKDAGTASTAIRKL------------YTTMASGDSAS--STMSAAFQKIGIDPGQL 389

Query: 511 SSEFSDDAKNAAMVILSGMKHQKDTETRYNTDHKSNKFDSLYDSYINTPLTKLEQSTAGG 570
           + +   D++ A M +  G+          N   K +    L+     + +  L  +T   
Sbjct: 390 AEDLQKDSQGALMKVFQGLN-------DLNDSEKLSVTKQLFGEEAMSSMGMLINNT--K 440

Query: 571 NFNKDKEAIKL--YLLGSMKDSGNYTLNRVRVSDAMQIVLGNTPVNINESMLMPP-RGMS 627
              ++ + +       GS+ +  N  LN       + +              +PP RG +
Sbjct: 441 FLKENLKLVGDATKYAGSVNNEYNNKLNTTASDIKLALKATTDMAAATTRFFLPPIRGAT 500

Query: 628 K--TDFEDRLWYATKDTGEYDPYTIKYMNVGSGKYMIIKNG 666
           K   +F + +   T+D     P   K M  G+  ++ +K G
Sbjct: 501 KGMVNFSEGITKFTEDY----PKLAKAMAFGAAGFVGLKLG 537


>gi|118350032|ref|XP_001008297.1| hypothetical protein TTHERM_00013180 [Tetrahymena thermophila]
 gi|89290064|gb|EAR88052.1| hypothetical protein TTHERM_00013180 [Tetrahymena thermophila SB210]
          Length = 1326

 Score = 41.4 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 52/352 (14%), Positives = 113/352 (32%), Gaps = 38/352 (10%)

Query: 70   QDFHDFTNSLDTRDSLQAGDKIKEYVDGRIRSAYDRFLSSISHRDVRK----KFQAQVEH 125
            Q+F +FT S+       A  ++            +  L   + R +++    K   Q  +
Sbjct: 829  QNFQNFTVSIQNNILRNAKRQLSSIDS------INNILEKKNFRRIKRISSAKLTFQNNN 882

Query: 126  DIRDYHTKGVDIQIGAT-----QRAQEDNLNMTVGLAAAHVLHDPSNENYFQRV---QSI 177
             ++         +I              N+  T    + ++  D + +NY +++   Q I
Sbjct: 883  KLK--QLSPNSCKINFQKCPSIVCLDNQNIKDT----SNNIKQDGTQQNYIEKITSKQKI 936

Query: 178  TDHINSLPIDLRLKQKLLSEAKEKLNTNQIIGAHARDPRVFENFMRAFYK-KGHPPKDST 236
             D  N    D +   K+++E  +  N  Q      ++     ++ +     +G   K   
Sbjct: 937  FDTQNR--RDFKSFDKMVNELSKYQNQTQKHNYTDKNFNQLNSYEQYCNAHQGCDEKQEE 994

Query: 237  SLSDVSDSARERSLEVVEDVSKAIGLAGWDRLDDTKRRRLLEHLSSRDNALNTKLRKETQ 296
               ++S      S +       ++     + ++       +    +++   N K  +E  
Sbjct: 995  RKRNISIDQYMSSQKQNNQAKSSLFQKIHNSVEYLNGIDNIIQKKNQNKTENDKKSEENS 1054

Query: 297  AQARRIDAQLNHGITVKPSELIPLEDYTQA--YGVEQGTELYNLQQFKSVAAPDVARIKL 354
             + +     LN     K         + +A    +EQ  E YN  Q K           L
Sbjct: 1055 KKLQAFPVYLNQ--ANKNENDFQQYKFQKADSIQIEQIQEFYNTNQIKQSKE---NSAFL 1109

Query: 355  MSTFDAKK----FLQKIDDEYISNPSLSLASTMMATKYKEILEKSHRQSMQE 402
                  +     FL  ++ +  S  + S      + +Y     K   Q+ Q+
Sbjct: 1110 SPNMSYQNTARPFLNNLEAKMQSKLNKSNDKFSQSQQYANNHTKQEEQNEQQ 1161


>gi|145481369|ref|XP_001426707.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124393783|emb|CAK59309.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1493

 Score = 41.4 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 50/110 (45%), Gaps = 3/110 (2%)

Query: 37  ALGKATQFLEGIRRDNAFATANTRYTELSFKAVQDFHDFTNSLDTRDSLQAGDKIKEYVD 96
              K+T  ++ ++ D           +    + Q  H+   +LD  + ++  +K +E  +
Sbjct: 384 KQNKSTSLIQQMKFDICTLKCKFELKQQMTISSQMIHNKAFNLDIDNFIKVENKSEELSN 443

Query: 97  GRIRSAYDR--FLSSISHRDVRK-KFQAQVEHDIRDYHTKGVDIQIGATQ 143
             IR   ++  FLS ++  ++++ K + QV H I+ +     +I++   Q
Sbjct: 444 QLIRDCQNKIKFLSLVNQNEIKRSKLEKQVNHCIQKFEKIINEIEVLYKQ 493


>gi|73969294|ref|XP_538328.2| PREDICTED: similar to SMC1 structural maintenance of chromosomes
           1-like 2 [Canis familiaris]
          Length = 1235

 Score = 41.0 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 45/273 (16%), Positives = 90/273 (32%), Gaps = 38/273 (13%)

Query: 45  LEGIRRDNAFATANTRYTELSFKAVQDFHDFTNSLDTRDSLQAGDKIKEY--VDGRIRSA 102
           LE + R+ +    +    E + KA +      + + TR   Q   ++K    +  + R  
Sbjct: 242 LEHVSRNLSVTKESLSRHENTVKAKK----KEHGMLTRQLQQTEKELKSLEALLNQKRPQ 297

Query: 103 YDRFLSSISHR----DVRKKFQAQVEHDIRDYH--TKGVDIQI--------GATQRAQED 148
           Y +   + SH     DV KK     E          K ++ ++           ++ +E+
Sbjct: 298 YIKAKENTSHHLKKLDVAKKSIKDSEKQCSKQEDDIKALETELVDLDGAWRSFEKQVEEE 357

Query: 149 NL---NMTVGLAAAHVLHDPSNENYFQRVQSITDHINSLPIDLRLKQKLL-----SEAKE 200
            L         A+    +    E   ++V  +T  +  L  + +  ++ L        + 
Sbjct: 358 ILHKGRDIELEASQLDRYKGLKEQVRKKVAIMTQQLEKLHWEQKADKERLAFERRRHGEV 417

Query: 201 KLNTNQIIGAHARDPRVFENFMRAFYKKGHPPKDST----SLSDVSDSARERSLEVVED- 255
           + N  QI        +  E             K+      +L    ++ + R  EV E+ 
Sbjct: 418 QENLKQIKEQIEDHKKRIEKLEEYTKTCMDCLKEKKQQEETLVGEIENTKSRMSEVNEEL 477

Query: 256 -----VSKAIGLAGWDRLDDTKRRRLLEHLSSR 283
                  +  G+   +     KR  +LEHL   
Sbjct: 478 NLIRSELQNAGIDSHEGTRQQKRAEVLEHLKRL 510


>gi|332025407|gb|EGI65574.1| hypothetical protein G5I_05964 [Acromyrmex echinatior]
          Length = 977

 Score = 41.0 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 74/503 (14%), Positives = 156/503 (31%), Gaps = 64/503 (12%)

Query: 9   PLVEAVTPNQDAVRDSVNPQAGLRDLGDALGKATQFLEGIRRDNAFATANTRYTELSF-- 66
           P  E      D +   V+P+  L+D+ ++  K +        +N F    + +T  S   
Sbjct: 468 PAFEDEPVVNDLIDLPVSPERNLKDIKNSDTKQSPASVDSAEENIFKEMESPFTNSSVVK 527

Query: 67  -------------------KAVQDFHDFTNSLD---------------TRDSLQAGDKIK 92
                              KA +   D  N LD               T +  Q+  KI 
Sbjct: 528 QNITSLLLDLRKLVKESNPKAKKLLDDLENILDINYKNNTELLVTCFNTSNKSQSSLKIS 587

Query: 93  EYVDGRIRSAYDRFLSSISHRDVRKKFQAQVEHDI-RDYHTKGVDIQIGATQRAQEDNLN 151
                    + +RF  S +   ++       E+++  +Y  K    Q    +  QE + N
Sbjct: 588 S-------ESIERFNKSSTVVRLKNTALNSTENEMQANYIEKQNIQQTTPVRNRQESSRN 640

Query: 152 MTVGLAAAHVLHDPSNENYFQRV-QSITDHINSLPIDLRLKQKLLSEAKEKLNTNQIIGA 210
           +     +  ++H  S E+  +++ +     I S P +   +        E  N       
Sbjct: 641 VHSSTLSTKMVHRRSLESKSKKIDRRSISAIESSPKN--TQVCRRKNTSESENR---QKR 695

Query: 211 HARDPRVFENFMRAFYKKGHPPKDSTSLSDVSDSARERSLEVVEDVSKAIGLAGWDRLDD 270
            + DP    N                +    SDS +E+S+ + +  +K        R D 
Sbjct: 696 FSSDPGFINNLSNKKL-MPEAYNSRKAEVAKSDSGKEKSIAISDVKNKLK-----KRSDV 749

Query: 271 TKRRRLLEHLSSRDNALNTKLRKETQAQARRIDA--QLNHGITVKPSELIPLEDYT-QAY 327
             +R  ++ +   DN    +     QA + +I    + +  I      +    + T   Y
Sbjct: 750 INKRGPMKAVHPLDNIQKRRASFGRQAPSSQITTPPKSDKAIPSDNKIISSTPNSTDNYY 809

Query: 328 GVEQGTELYNLQQFKSVAAPDVARIKLMSTFDAKKFLQKIDDEYISNPSLSLASTMMATK 387
             ++ ++   +    +    +   + L+S    +     I         L+      + K
Sbjct: 810 MPKKPSKSKPIAS-STPDGQNSKSVPLISANKKRNLSCDISPVTTHVNMLNSDEQKNSPK 868

Query: 388 YKEILEKSHRQSMQELNQ-DAISWGI---KYKQIDPLRFDTEESFADSLRQRAGFVKKIK 443
               L    + +     Q D I   +   ++   +     + +    SL     +    +
Sbjct: 869 RMSKLPTPKKCTTPTRQQTDGIPRFLTPPRHYSFNTNNLQSPQRLNKSLISFQRYSPANE 928

Query: 444 DDYNLTTSHFNKTEENQLRTQLV 466
            +   T       E N++  ++ 
Sbjct: 929 KNVGKTIQQSPLKETNRITPKVK 951


>gi|317126334|ref|YP_004100446.1| von Willebrand factor A [Intrasporangium calvum DSM 43043]
 gi|315590422|gb|ADU49719.1| von Willebrand factor type A [Intrasporangium calvum DSM 43043]
          Length = 685

 Score = 40.6 bits (93), Expect = 0.85,   Method: Composition-based stats.
 Identities = 50/352 (14%), Positives = 113/352 (32%), Gaps = 40/352 (11%)

Query: 10  LVEAVTPNQDAVRDSVNPQAGLRDLGDALGKATQFLEGIRRDNAFATAN----------- 58
           L EA+    + V    +P+  +R+     G+A Q L+ + R  A                
Sbjct: 22  LAEALEAIGEEVMSGRSPERAMREFLRRGGRAQQGLDDLARRVAERRREILQRHHLDGTM 81

Query: 59  ---TRYTELSFKAVQDFHDFTNSLDTRDSLQAGDKIKEYVDGRIRSAYDRFLSSISHRDV 115
                  + +  A +         D R +      + +     +    D    S   R+ 
Sbjct: 82  QEVRELLDQAVLAERKQLARDLDDDARFAEMRIGNLPQSTAAAVSELSDYPWRSSDAREA 141

Query: 116 RKKFQAQVEHDIRDYHTKGVDIQI-GAT---QRAQEDNLNMTVGLAAAHVLHDPSNENYF 171
            ++ +  +  ++ D    G+   + GAT   ++   + L+    L  AH   +P+++ + 
Sbjct: 142 YEQIKDLLGRELLDQRFAGLKQALEGATDEDRKRINEMLDDLNNLLEAHRSGEPTDDLFR 201

Query: 172 QRVQSITDHINSLPIDLRLKQKLLSEAKEKLNTNQIIGAHARDPRVFENFMRAFYKKGHP 231
                +  H +  P + +   +L+    ++    Q +  ++  P      M    +    
Sbjct: 202 D---FMDKHGDFFPENPQSIDELMDALAQRSAAAQRM-LNSMTPEQRAELMALSQQAFGS 257

Query: 232 PKDSTSLSDVSDSARERSLEVVEDVSKAIGLAGWDRLDDTKRRRLLEHLSSRDNALNTKL 291
           P     L  + D+   R+L   ED   +    G   L        ++ L+  D+      
Sbjct: 258 PDLVNQLGRLDDN--LRALRPGEDWDGSERFEGDQGLGLGDGTGAVQDLAELDDLAEALA 315

Query: 292 RKETQAQARRIDAQLNHGITVKPSELIPLEDYTQAYGVEQGTELYNLQQFKS 343
           +    A+                 + + L+   +  G E   +   L + + 
Sbjct: 316 QSYAGARL----------------DDVDLDQLARQLGPEAAVDARTLAELER 351


>gi|228471145|ref|ZP_04055964.1| conserved hypothetical protein [Porphyromonas uenonis 60-3]
 gi|228307085|gb|EEK16159.1| conserved hypothetical protein [Porphyromonas uenonis 60-3]
          Length = 544

 Score = 40.2 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 48/326 (14%), Positives = 98/326 (30%), Gaps = 15/326 (4%)

Query: 31  LRDLGDALGKATQFLEGIRRDNAFATANTRYTELSFKAVQDFHDFTNSLDTRDSLQAGDK 90
           LR+  + L KA Q  E +++      A     +L  +  +   D T  + +R       +
Sbjct: 61  LRESEEILEKAKQDAEILKQQKVIE-AKEYALQLKSELEERLADRTAQVQSR--ETTLQQ 117

Query: 91  IKEYVDGRIRSAYDRFLSSISHRDVRKKFQAQVEHDIRDYHTKGVDIQIGATQRAQEDNL 150
           +++ +  R +   D         +  +K   Q E  +     +     I   Q   E+  
Sbjct: 118 LEQTLTARTKQLEDASTEL----ERERKQMTQQEQLVAQKQEELTQ-AIRTQQAKLEEIG 172

Query: 151 NMTVGLAAAHVLHDPSNENYFQRVQSITDHINSLPIDLRLKQKLL------SEAKEKLNT 204
            ++   A   ++     E   Q      + I    ++   + + L        A E    
Sbjct: 173 GLSAAQAKEQLIESLRLEARDQAAAYTAEVIEEAKMNASQEARRLIVATIQRIATETAVE 232

Query: 205 NQIIGAHARDPRVFENFMRAFYKKGHPPKDSTSLSDVSDSARER-SLEVVEDVSKAIGLA 263
           N +   H  +  V    +    +     + +T +  + D   E   L   + V + I   
Sbjct: 233 NSVSVFHIDNDEVKGRIIGREGRNIRALEAATGVEIIVDDTPEAIVLSAFDPVRREIARL 292

Query: 264 GWDRLDDTKRRRLLEHLSSRDNALNTKLRKETQAQARRIDAQLNHGITVKPSELIPLEDY 323
              +L    R          D        +  +   R I     HG+  +   L+    Y
Sbjct: 293 ALHQLVQDGRIHPARIEEVVDRVSKQIEEEIIETGKRTIIDLGIHGMHPELVRLVGKMKY 352

Query: 324 TQAYGVEQGTELYNLQQFKSVAAPDV 349
             +YG              +  A ++
Sbjct: 353 RSSYGQNLLQHARETANLCATMASEL 378


>gi|332299880|ref|YP_004441801.1| 2,3 cyclic-nucleotide 2-phosphodiesterase [Porphyromonas
           asaccharolytica DSM 20707]
 gi|332176943|gb|AEE12633.1| 2,3 cyclic-nucleotide 2-phosphodiesterase [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 544

 Score = 40.2 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 48/326 (14%), Positives = 100/326 (30%), Gaps = 15/326 (4%)

Query: 31  LRDLGDALGKATQFLEGIRRDNAFATANTRYTELSFKAVQDFHDFTNSLDTRDSLQAGDK 90
           LR+    L KA Q  E +++      A     +L  +  +   D T  + +R       +
Sbjct: 61  LREADSILEKAQQDAEILKQQKMIE-AKEYALQLKGELEERLADRTAQVQSR--ETTLQQ 117

Query: 91  IKEYVDGRIRSAYDRFLSSISHRDVRKKFQAQVEHDIRDYHTKGVDIQIGATQRAQEDNL 150
           +++ +  R +   D   S + H    +K  AQ E  +     +     +    + +E   
Sbjct: 118 LEQTLTARTKQLEDA-SSDLEH---ERKQMAQQEQLVAQKQEELNAAILSQQAKLEEIG- 172

Query: 151 NMTVGLAAAHVLHDPSNENYFQRVQSITDHINSLPIDLRLKQKLL------SEAKEKLNT 204
            ++   A   ++     E   Q      + I    ++   + + L        A E    
Sbjct: 173 GLSATQAREQLIESLRLEARDQAAAYTAEVIEEAKMNASQEARRLIVATIQRIATETSVE 232

Query: 205 NQIIGAHARDPRVFENFMRAFYKKGHPPKDSTSLSDVSDSARER-SLEVVEDVSKAIGLA 263
           N +   H  +  V    +    +     + +T +  + D   E   L   + V + +   
Sbjct: 233 NSVSVFHIDNDEVKGRIIGREGRNIRALEAATGVEIIVDDTPEAIVLSAFDPVRREVARL 292

Query: 264 GWDRLDDTKRRRLLEHLSSRDNALNTKLRKETQAQARRIDAQLNHGITVKPSELIPLEDY 323
              +L    R          D        +  +   R I     HG+  +   L+    Y
Sbjct: 293 ALHQLVQDGRIHPARIEEVVDRVSKQIEEEIIETGKRTIIDLGIHGMHPELVRLVGKMKY 352

Query: 324 TQAYGVEQGTELYNLQQFKSVAAPDV 349
             +YG              +  A ++
Sbjct: 353 RSSYGQNLLQHARETANLCATMASEL 378


>gi|311256115|ref|XP_003126510.1| PREDICTED: activating transcription factor 7-interacting protein
           1-like [Sus scrofa]
          Length = 1134

 Score = 40.2 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 40/291 (13%), Positives = 95/291 (32%), Gaps = 18/291 (6%)

Query: 137 IQIGATQRAQEDNLNMTVGLAAAHVLHDPSNENYFQRVQSITDHINSLPIDLRLKQKLLS 196
           ++I  +++ QE+N +      + +V+ D  NEN  +     TD + +  I   L++   +
Sbjct: 255 MEIDQSEKNQEENSSDLAETISENVMKDDKNENILEN----TDSMETDEIIPILEKLAPA 310

Query: 197 EAKEKLNTNQIIGAHARDPRVFENFMRAFYKKGHPPKDSTSLSDVSDSARERSLEVVEDV 256
           E +    +   +          E  M   +             D S+S  + +  V+ D 
Sbjct: 311 EDELTCFSKASLLPIDETNTDLEEKMEGSFGSPSK-------QDSSESLPKEAFLVLSDE 363

Query: 257 SKAIGLAGWDRLDDTKRRRLLEHLSSRDNALNTKLRKETQAQARRIDAQLNHGITVKPSE 316
               G      +         E + S +     +  +    +  R  ++ +     K S+
Sbjct: 364 EDVSGEKDESEVISQNETCSPEEVESTEKDSKAEEEERVIHEDER-PSEKSEFFRRKRSK 422

Query: 317 LIPLEDYTQAYGVEQGTELYNLQQFKSVAAPDVAR-IKLMSTFDAKKFLQKIDDEYISNP 375
              +++           E     Q K  A  D+ + ++ +  +  ++ L  +        
Sbjct: 423 SEDMDNVQSKRRRYMEEEYEAEFQVKITAKGDINQKLQKVVQWLLEEKLCALQCAVFDKT 482

Query: 376 SLSLA---STMMATKYKEILEKSHRQSMQELNQD--AISWGIKYKQIDPLR 421
              L      +   K  + +    +  +  L +   A    +K +Q +P  
Sbjct: 483 LAELKTRVEKIECNKRHKTVLTELQAKIARLTKRFGAAKEDLKKRQENPPN 533


>gi|169824265|ref|YP_001691876.1| ATP-dependent DNA helicase [Finegoldia magna ATCC 29328]
 gi|167831070|dbj|BAG07986.1| ATP-dependent DNA helicase [Finegoldia magna ATCC 29328]
          Length = 725

 Score = 39.8 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 70/446 (15%), Positives = 148/446 (33%), Gaps = 28/446 (6%)

Query: 39  GKATQFLEGIRRDNAFATANTRYTELSFKAVQDFHDFTNSLDTRDSLQAGDKIKEYVDGR 98
           G   Q ++   +D  F  A     E ++++ Q   D  N++   +SL+    +    +  
Sbjct: 257 GANIQNIQNFEKD--FKNAKVILLEQNYRSTQPILDLANTVIKNNSLRKDKNLWTAKNEG 314

Query: 99  IRSAYDRFLSSISHRDVRKKFQAQVEHDIRDYHTKGVDIQIGATQRAQEDNLNM------ 152
               Y R  S I   D   ++  Q  +    Y    +  +  A  R  E+ LN       
Sbjct: 315 DMPIYRRMYSDIDEADQVVQWIEQERYRENPYEEMAILYRTNAQSRLFEERLNRLGIPNR 374

Query: 153 TVGLAAAHVLHDPSN-ENYFQRVQSITDHINSLPIDLRLKQKLLSEAKEKLNTNQIIGAH 211
            VG    +   +  +  +Y + V+++ D++    I    K+ +     +KL       + 
Sbjct: 375 VVGGLKFYDRKEIKDCVSYLRIVENLNDNMALNRIINEPKRGIGKTTMDKLLQCSQNRSI 434

Query: 212 ARDPRVFENFMRAFYKKGHPPKDSTSLSDVSDSARERSLEVVEDVSKAIGLAGWDRLDDT 271
           +    + +  +  F       K       +  S  +  + V E +   +   G+      
Sbjct: 435 SMMQYIIDTDLPDF--SNATAKKLQEFYYLIKSFPKDQMNVAELMEYILDKTGY------ 486

Query: 272 KRRRLLEHLSSRDNALNTKLRKETQAQARRIDAQLNHGITVKPSELIPLEDYTQAYGVEQ 331
             R  LE  ++RD+    +   E  +   +           +  E   L   T     + 
Sbjct: 487 --RANLEKSTNRDDKTRLENIDEYVSSLYQFVQDNPDKNLREYLETSSL--MTDLDKTDD 542

Query: 332 GTELYNLQQFKSVAAPDVARIKLMSTFDAKKFLQKIDDEYISNPSLSLASTMMATKYKEI 391
            T+  ++    +    +   +   +  +      ++D++      L   +   A K   I
Sbjct: 543 NTKGVSMMTIHAAKGLEFDVVF-FTGLEEGTIPSRVDEDVEEERRLCYVAITRARKKLYI 601

Query: 392 LEKSHRQSMQELNQDAISWGIKYKQIDPL-RFDTEESFADSLRQRAGFVKKIKDDYNLTT 450
              +  QS +  N+       + + I+ +     +ES    +  R  F  K+ DDY    
Sbjct: 602 ---TSVQSRRRFNE--FQTKAESRFIEEMENKYKDESPNKEVSFRESFNTKVVDDYRTEA 656

Query: 451 SHFNKTEENQLRTQLVKRPASESVDL 476
           S     ++N +     K  A + V  
Sbjct: 657 SASITKKQNNVTKNNEKYRAGDKVSH 682


>gi|115698855|ref|XP_781651.2| PREDICTED: similar to myosin tail domain-containing protein
           [Strongylocentrotus purpuratus]
 gi|115976751|ref|XP_001183515.1| PREDICTED: similar to myosin tail domain-containing protein
           [Strongylocentrotus purpuratus]
          Length = 805

 Score = 39.8 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 48/333 (14%), Positives = 106/333 (31%), Gaps = 20/333 (6%)

Query: 272 KRRRLLEHLSSRDNALNTKLRKETQAQARRIDAQLNHGITVKPSELIPLEDYTQAYGVEQ 331
           +R    E       +       + QAQ  ++ AQL  G   K +    L    Q+   E+
Sbjct: 6   RRLNESERDKLELTSAFNSENSDLQAQIAKLRAQLEKGEADKQNVEYELAVARQSVSREK 65

Query: 332 GTELYNLQQFKSVAAPDVARIKLMSTFDAKKFLQKI--DDEYISNPSLSLASTMMATKYK 389
                  QQ K +      ++  +S    +  +Q    + E ++  +          K  
Sbjct: 66  IGASEKEQQLKGIITSQSEKLSSLSAQVQELQIQASQHEREMVNIQNKHHREMDEQEKRL 125

Query: 390 E-------ILEKSHRQSMQELNQDAISWGIKYKQIDPLRFDTEESFADSLRQRAGFVKKI 442
                   +L+ +  +  Q  ++    +    +++  LR + +       +Q        
Sbjct: 126 ASVIAERDVLQTAKDEIEQVFHEQESLYSDAQEKMTELRIERDTQTQTVRQQLHDLQGAA 185

Query: 443 KDDYNLTTSHF-NKTEENQLRTQLVKRPASESVDLIRGAYNTLSDSDKEGVRSSFAHIED 501
           + D    T     K E  +++ ++ K  ++ +              D EG  S      +
Sbjct: 186 ERDATTRTELVAAKEELKEMQERIEKERSAHTESKFNFEIVQCQKRDLEGALSVEKSARE 245

Query: 502 N------GLSAVVRLSSEFSDDAKNAAMVILSGMKHQKDTETRYNTDHKSNKFDSLYDSY 555
                   +S  +RL++E+       +  I    K +  + T    D     F+ L D  
Sbjct: 246 QAIYNMDAMSKQIRLTAEYETTKNALSAEI--DQKREVLSGTSQQIDLYQKNFNGLKDEL 303

Query: 556 INTPLTKLEQSTAGGNFNKDKEAI--KLYLLGS 586
                 ++      G   ++ E +    +++G 
Sbjct: 304 TRAKKRQIYLEETYGGCMRELELLLSNFHVMGE 336


>gi|313886984|ref|ZP_07820684.1| YmdA/YtgF family protein [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312923510|gb|EFR34319.1| YmdA/YtgF family protein [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 544

 Score = 39.8 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 47/326 (14%), Positives = 100/326 (30%), Gaps = 15/326 (4%)

Query: 31  LRDLGDALGKATQFLEGIRRDNAFATANTRYTELSFKAVQDFHDFTNSLDTRDSLQAGDK 90
           LR+    L KA Q  E +++      A     +L  +  +   D T  + +R       +
Sbjct: 61  LREADSILEKAQQDAEILKQQKMIE-AKEYALQLKGELEERLADRTAQVQSR--ETTLQQ 117

Query: 91  IKEYVDGRIRSAYDRFLSSISHRDVRKKFQAQVEHDIRDYHTKGVDIQIGATQRAQEDNL 150
           +++ +  R +   D    + S  +  +K  AQ E  +     +     +    + +E   
Sbjct: 118 LEQTLTARTKQLED----ASSDLERERKQMAQQEQLVAQKQEELNAAILSQQAKLEEIG- 172

Query: 151 NMTVGLAAAHVLHDPSNENYFQRVQSITDHINSLPIDLRLKQKLL------SEAKEKLNT 204
            ++   A   ++     E   Q      + I    ++   + + L        A E    
Sbjct: 173 GLSATQAREQLIESLRLEARDQAAAYTAEVIEEAKMNASQEARRLIVATIQRIATETSVE 232

Query: 205 NQIIGAHARDPRVFENFMRAFYKKGHPPKDSTSLSDVSDSARER-SLEVVEDVSKAIGLA 263
           N +   H  +  V    +    +     + +T +  + D   E   L   + V + +   
Sbjct: 233 NSVSVFHIDNDEVKGRIIGREGRNIRALEAATGVEIIVDDTPEAIVLSAFDPVRREVARL 292

Query: 264 GWDRLDDTKRRRLLEHLSSRDNALNTKLRKETQAQARRIDAQLNHGITVKPSELIPLEDY 323
              +L    R          D        +  +   R I     HG+  +   L+    Y
Sbjct: 293 ALHQLVQDGRIHPARIEEVVDRVSKQIEEEIIETGKRTIIDLGIHGMHPELVRLVGKMKY 352

Query: 324 TQAYGVEQGTELYNLQQFKSVAAPDV 349
             +YG              +  A ++
Sbjct: 353 RSSYGQNLLQHARETANLCATMASEL 378


>gi|85859460|ref|YP_461662.1| membrane bound protein mediates protein-protein interactions
           [Syntrophus aciditrophicus SB]
 gi|85722551|gb|ABC77494.1| membrane bound protein mediates protein-protein interactions
           [Syntrophus aciditrophicus SB]
          Length = 225

 Score = 39.4 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 12/91 (13%), Positives = 34/91 (37%)

Query: 33  DLGDALGKATQFLEGIRRDNAFATANTRYTELSFKAVQDFHDFTNSLDTRDSLQAGDKIK 92
           D+  A+    +F+     +N F   +       +++ +D+     +L   + ++AG    
Sbjct: 118 DIDSAIKSYEKFIANASDENEFKVLSYSSLAYCYESKKDYQKALKALQQAEKVEAGKYFG 177

Query: 93  EYVDGRIRSAYDRFLSSISHRDVRKKFQAQV 123
            ++   +   Y++  +        +K   Q 
Sbjct: 178 TFLYRDMGRLYEKMQNRSEALKFYRKALEQS 208


>gi|323303756|gb|EGA57542.1| Sir3p [Saccharomyces cerevisiae FostersB]
          Length = 978

 Score = 39.4 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 57/363 (15%), Positives = 111/363 (30%), Gaps = 37/363 (10%)

Query: 146 QEDNLNMTVGLAAAHVLHDPSNENYFQRVQSITDH---INSLPIDLRLKQKLLSEAKEKL 202
           QE++++  +  A+   L  P++ +   + +SI+        +PI+   ++       E  
Sbjct: 277 QEESVSPNISSASPSALTSPTDSSKILQKRSISKELIVSEEIPINSSEQESDYEPNNETS 336

Query: 203 NTNQIIGAHARDP-----RVFENFMRAFYKKGHPPKDSTSLSDVSDSARERSLEVVEDVS 257
             +   G+             ENF+ A         D     +  + + E S E +  V+
Sbjct: 337 VLSSKPGSKPEKTSTELVDGRENFVYA--NNPEVSDDGGLEEETDEVSSESSDEAIIPVN 394

Query: 258 KAIGLAGWDRLDDTKRRRLLEHLSSRDNALNTKLRKETQAQARRIDAQLNHGITVKPSEL 317
           K  G  G   L    R+  ++          T+   E     +    + N  I       
Sbjct: 395 KRRGAHG-SELSSKIRKIHIQETQEFSQNYTTETDNEMNGNGKPGIPRXNTKIHSMNENP 453

Query: 318 IPLEDYTQAYGVEQGTELYNLQQFKSVAAPDVARIKLMSTFDAKKFLQKIDDEYISNPSL 377
            P +      G  +  +   L + K      + R    +       L K+ DE  S    
Sbjct: 454 TPEK------GNAKMIDFATLSKLKKKYQIILDRFAPDNQVTDSSQLNKLTDEQSSLDVA 507

Query: 378 SLASTMMATKYKEILEKSHRQSMQELNQDAISWGIKYKQIDPLRFDTEESFADSLRQRAG 437
            L         K          +   N D                + EES  +SL++R  
Sbjct: 508 GLEDKF----RKACSSSGRETILSNFNAD---------------INLEESIRESLQKREL 548

Query: 438 FVKKIKDDYNLTTSHFNKTEENQLRT-QLVKRPASESVDLIRGAYNTLSDSDKEGVRSSF 496
              +++D   +    ++    +Q +   +     S    L+    + L  S        F
Sbjct: 549 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF 608

Query: 497 AHI 499
            +I
Sbjct: 609 DYI 611


>gi|309360073|emb|CAP31915.2| CBR-AKA-1 protein [Caenorhabditis briggsae AF16]
          Length = 1337

 Score = 39.4 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 40/326 (12%), Positives = 92/326 (28%), Gaps = 35/326 (10%)

Query: 109 SISHRDVRKKFQAQVEHDIRDYHTKGVDIQIGATQRAQEDNLNMTVGLAAAHVLHDPSNE 168
           S+S  + +    +  +   RD+  +  D  I      +     MT  L    + +DP+ +
Sbjct: 241 SLSEPETQNNDTSTRKAGGRDFSDESSDESILFQYADKISEEVMTAALGTRKLHYDPAVQ 300

Query: 169 NYFQRVQSITDHINSLPIDLRLKQKLL--SEAKEKLNTNQIIGAHARDPRVFENFMRAFY 226
            ++    SI D           ++  L    + +   T       +   +V +       
Sbjct: 301 EFYHANDSIPDVFAMSFASTTSRKSELNNDTSNQLSGTENKQKLPSVVEQVEQAEESEKE 360

Query: 227 KKGHPPKDSTSLS-----DVSDSARERSLEVVEDVSKAIGLAGWDRLDDTKRRRLLEH-- 279
            +    +D++        D  DS+ +    V  +      L  +  +        +E   
Sbjct: 361 NEPDEQQDNSESDCSLKHDKEDSSPQN---VESETVHMTSLEQYPEVSLLTDVISVEEEI 417

Query: 280 ----------LSSRDNALNTKLRKETQAQARRIDAQLNHGITVKPSELIPLEDYTQAYGV 329
                     + S+D       +         I  + N  +  K SE     +   +   
Sbjct: 418 AASDISGDCSMDSKDTEQPVVEQPSINDSEDNIATEANTPVVEKNSEEKVTSETVDSMPS 477

Query: 330 EQGTEL-YNLQQFKSVAAPDV----------ARIKLMSTFDAKKFLQKIDDEYISNPSLS 378
           +        + +     AP            + ++ +S       +   +DE  + P   
Sbjct: 478 DDDESAPETVVEAVGFKAPTTDEEENREDADSIVESVSNDSQDSLVGTTEDETENRPRFD 537

Query: 379 LASTMMATKYKEILEKSHRQSMQELN 404
             S++         +    Q  +E  
Sbjct: 538 --SSIATVHVLHESDSDESQPRRERR 561


>gi|254503648|ref|ZP_05115799.1| Sel1 repeat family [Labrenzia alexandrii DFL-11]
 gi|222439719|gb|EEE46398.1| Sel1 repeat family [Labrenzia alexandrii DFL-11]
          Length = 1338

 Score = 39.4 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 79/512 (15%), Positives = 159/512 (31%), Gaps = 47/512 (9%)

Query: 26  NPQAGLRDLGDALGKATQFLEGIRRDNAFATANTRYTELSFKAVQDFHDFTNSLDTRDSL 85
            P AG+ D+  AL +  Q ++G+  D  +A    R    S +A +   D  +  D     
Sbjct: 86  APDAGIDDVMGALDRLDQQVQGLAGDEDYADEYERAPSRSHRAGRYAIDALDESDAYGDD 145

Query: 86  QAGDKIKEYVDGRIRSAYDRFLSSISHRDVRKKFQAQVEHDIRDYHTKGVDIQIGATQRA 145
                   Y D      Y         R  R+   A     +  Y   G   +I A ++ 
Sbjct: 146 DGYYNDDPYADAD----YGDEDDVYYQRAPRRSSIASRNASMHAYKDLGR--RIDALRKP 199

Query: 146 QED---NLNMTVGLA--AAHVLHDPSNENYFQRV---QSITDHINSLPIDLRLKQKLLSE 197
           QE    ++   +G    A   +   +NE   ++    + + D ++ L  D +  Q     
Sbjct: 200 QEQALAHVREELGSLRDALGGISRGTNETVNRQNTELRRLADMVDRLRNDKKNDQLAKEI 259

Query: 198 AKEKLNTNQIIGAHARDPRVFENFMRAFYKKGHPPK--DSTSLSDVSDSARERSLEVVED 255
            KE      ++G       V        +   H  +  D  S + V D    RS+ V  +
Sbjct: 260 RKEVAELKSLVG----RTNVEGALQTLEHGYAHILQRLDELSRASV-DPRVLRSVTVRLN 314

Query: 256 VSKAIGLAGWDRLDDTKRRRLLEH----LSSRDNA-LNTKLRKETQ---AQARRIDAQLN 307
             +      +  L  ++   +LE     ++ R    L  K   E +   A+ R +   + 
Sbjct: 315 EIE----DAFAALPRSEHMMVLEDRVVSIAERMEELLQRKDHAEIEPLRAELREVRGFVQ 370

Query: 308 HGITVKPSELIPLEDYTQAYGVEQGTELYNLQQFKSVAAPDVARIKLMSTFDAKKFLQKI 367
               +    L+   D    +   +  +L  L + +      ++ ++        + + ++
Sbjct: 371 Q---IDVKGLVESIDDRMKFVSNRLDDLETLAKEQRGLDNRLSAMEQRMPE--PETITRL 425

Query: 368 DDEYISNPSLSLASTMMATKYKEILEKSHRQSMQELNQDAISWGIKYKQIDPLRFDTEES 427
                          MMA       ++ H   +     D +    + +Q  P++     +
Sbjct: 426 QGRLEDIVG------MMADDRSAPADQEHLAQLDHRLNDIVDRLERMEQAKPIQSGDPGA 479

Query: 428 FADSLRQRAGFVKKIKD--DYNLTTSHFNKTEENQLRTQLVKRPASESVDLIRGAYNTLS 485
           F D+L  R   +    D  +              Q  +       ++  D +      L 
Sbjct: 480 F-DALGTRLEAISTKIDAIEKRAARPVIAPVAAAQSASGADTEFFAQIQDRLNDLTTRLD 538

Query: 486 DSDKEGVRSSFAHIEDNGLSAVVRLSSEFSDD 517
                   S    +     +   R++   S D
Sbjct: 539 QPKDTVTTSDLDKLRSEITAMRERVAQPASTD 570


>gi|300742137|ref|ZP_07072158.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa M567]
 gi|300381322|gb|EFJ77884.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa M567]
          Length = 719

 Score = 39.4 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 59/400 (14%), Positives = 120/400 (30%), Gaps = 48/400 (12%)

Query: 96  DGRIRSAYDRFLSSISHRDVRKKFQA---QVEHDIRDYHTKGVDIQIGATQRAQEDNLN- 151
           D + R  +   L  +   + R+K  A   Q   +    +    + + GAT    E+ L+ 
Sbjct: 18  DNKARRMW---LECVGESERRRKACARTPQQNEEKVTENIPAENTEQGATLGNTEETLSV 74

Query: 152 -MTVGLAAAHVLHDPSNENYFQRVQSITDHINSLPIDLRLKQKLLSEAKEK----LNTNQ 206
             TV  ++      P+NE          D   S+  + R       +  E      +  +
Sbjct: 75  EKTVEESSLETGEKPANEK--------ADAAESMTAEPREDNAATKKNTEDNTHESHEEE 126

Query: 207 IIGA--HARDPRVFENFMRAFYKKGHPPKDSTSLSDVSDSARERSLEVVEDVSKAIGLAG 264
                    DPRV        Y+K  P ++ T    +  +      +VV       G   
Sbjct: 127 GTRFTDLGLDPRVLSALEEVGYEKPSPIQEQTIPPLLDGN------DVVGLAQTGTGKTA 180

Query: 265 WDRLDDTKRRRLLEHLSSRDNALNTKLRKETQAQARRIDAQLNHGITVKPSELIPLEDYT 324
              L    R   L  +    N ++   +    A  R +  Q+    +   + +       
Sbjct: 181 AFALPALSRMAELADI----NGVSRDTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLP 236

Query: 325 QAYGVEQGTELYNLQQFKSVA--------------APDVARIKLMSTFDAKKFLQKIDDE 370
              G   G +L  L++   V               + D++ ++ +   +A + L+    E
Sbjct: 237 IYGGSPYGPQLAGLRRGAQVVVGTPGRVIDHLEKGSLDLSNLQYLVLDEADEMLRMGFAE 296

Query: 371 YISNPSLSLASTMMATKYKEILEKSHRQSMQELNQDAISWGIKYKQIDPLRFDTE--ESF 428
            +               +   +  S R+  Q+   D     +K K            +  
Sbjct: 297 DVETILEGTPDAKQVALFSATMPNSIRKIAQQYLNDPTEVRVKTKTTTGANIRQRYMQVM 356

Query: 429 ADSLRQRAGFVKKIKDDYNLTTSHFNKTEENQLRTQLVKR 468
                     V ++++   +      K E  ++  +L  R
Sbjct: 357 HSHKLDAMTRVLEVENYDGIIVFVRTKKETEEVADKLKAR 396


>gi|315121929|ref|YP_004062418.1| hypothetical protein CKC_00895 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
 gi|315122891|ref|YP_004063380.1| hypothetical protein CKC_05735 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
 gi|313495331|gb|ADR51930.1| hypothetical protein CKC_00895 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
 gi|313496293|gb|ADR52892.1| hypothetical protein CKC_05735 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
          Length = 129

 Score = 39.1 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 38/76 (50%)

Query: 12 EAVTPNQDAVRDSVNPQAGLRDLGDALGKATQFLEGIRRDNAFATANTRYTELSFKAVQD 71
          E + PNQDAVRD+V+P  GL+ +   L    Q  +  R ++  A A T+    S     D
Sbjct: 12 EPLAPNQDAVRDAVDPLGGLKTVAQGLDSLNQLYQERRSEHIKAQALTQDALHSADDHAD 71

Query: 72 FHDFTNSLDTRDSLQA 87
          F  +  SL T   +QA
Sbjct: 72 FARYMTSLPTGVDVQA 87


>gi|296005375|ref|XP_002809012.1| conserved Plasmodium protein, unknown function [Plasmodium
           falciparum 3D7]
 gi|225631952|emb|CAX64293.1| conserved Plasmodium protein, unknown function [Plasmodium
           falciparum 3D7]
          Length = 1069

 Score = 39.1 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 26/182 (14%), Positives = 63/182 (34%), Gaps = 24/182 (13%)

Query: 84  SLQAGDKIKEYVDGRIRSAYDRFLSSISHRDVRKKFQAQVEHDIRDYHTKGVDIQIGATQ 143
           +      +K+Y   +I+S  D F   I   +++K    + EH I     +     I   +
Sbjct: 158 TEYMNKNLKDY-SDKIKSLDDEFNDEIPFENIQKFNDEKSEHTIEMNRERDDIYDINNNK 216

Query: 144 RAQEDNLNMTVGLAAAHVLHDPSNENYFQRVQSITDHINSLPI--DLRLKQKL-LSEAKE 200
              ++N N+       +  +   NEN        +D      I  ++  K++    +  +
Sbjct: 217 NDSKENNNINSRCITNNTKY---NENIIMNTSYHSDKNILESIYNNVVNKKERDNDKTYK 273

Query: 201 KLNTNQII----GAHARDPRVFENFMRAFYKKGHPPKDSTSLSDVSDSARERSLEVVEDV 256
            ++ N++I         +P ++                +       ++  E +  +  D+
Sbjct: 274 FIDKNKVINNVNDIENNNPDIY-------------VNSANCPDTKENNTNEDNHMINIDI 320

Query: 257 SK 258
           +K
Sbjct: 321 NK 322


>gi|323394609|gb|ADX61736.1| erythrocyte membrane protein 1 [Plasmodium falciparum]
          Length = 192

 Score = 39.1 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 5/93 (5%)

Query: 490 EGVRSSFAHIEDNGLSAVVRLSSEFSDDAKNAA-----MVILSGMKHQKDTETRYNTDHK 544
           EGV  S  H +    +   +L +E +    +         +  G   +   E +   D+ 
Sbjct: 33  EGVLISADHGKHQLTNEGSQLCTELARSFADIGDIIRGKDLFRGYNQKDRNEKKQLQDNL 92

Query: 545 SNKFDSLYDSYINTPLTKLEQSTAGGNFNKDKE 577
            + F  ++++  +T      Q     NF K +E
Sbjct: 93  KDIFKKIHNNLQDTEARDRYQDDEDKNFFKLRE 125


>gi|120436226|ref|YP_861912.1| phosphodiesterase [Gramella forsetii KT0803]
 gi|205831622|sp|A0M2K0|CNPD_GRAFK RecName: Full=2',3'-cyclic-nucleotide 2'-phosphodiesterase
 gi|117578376|emb|CAL66845.1| HD superfamily hydrolase [Gramella forsetii KT0803]
          Length = 520

 Score = 39.1 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 45/348 (12%), Positives = 109/348 (31%), Gaps = 23/348 (6%)

Query: 13  AVTPNQDAVRDSVNPQAGLRDLGDALGKATQFLEGIRRDNAFATANTRYTELSFKAVQDF 72
           A+    +  + S    +  ++ G  L +A    E I++D     A  ++ EL  +  +  
Sbjct: 19  AIAKMLEKKQASGTIASAKKEAGSILKEAKAEGESIKKDKILQ-AKEKFIELKSEHEKVI 77

Query: 73  HDFTNSLDTRDSLQAGDKIKEYVDGRI---RSAYDRFLSSISHRDVRKKFQAQVEHDIRD 129
                 ++  D+ +     + +V   +   +         ++  D R  F  + + DI  
Sbjct: 78  LSRDKKIN--DAEKRIKDKESHVSNELGKNKKLNKDLEEKVADYDHRLDFLEKKQEDIDK 135

Query: 130 YH-TKGVDIQIGATQRAQE------DNLNMTVGLAAAHVLHDPSNENYFQRVQSITDHIN 182
            H +K   +++ +   A++      ++L  T    A  ++ D   E      Q     I 
Sbjct: 136 LHNSKVQQLEVISGLSAEDAKAQLIESLKDTAKADAMSIIQDTVEEAKLTAQQEARKIII 195

Query: 183 SLPIDLRLKQKLLSEAKEKLNTNQIIGAHARDPRVFENFMRAFYKKGHPPKDSTSLSDVS 242
           +          +     E+   N +   +     V    +    +     + +T +  + 
Sbjct: 196 NT---------IQRIGTEEAIENCVSVFNLESDDVKGRIIGREGRNIRALEAATGVEIIV 246

Query: 243 DSARERSL-EVVEDVSKAIGLAGWDRLDDTKRRRLLEHLSSRDNALNTKLRKETQAQARR 301
           D   E  +    + V + +      +L    R                   +      R 
Sbjct: 247 DDTPEAIILSCFDSVRREVARLSLHKLVTDGRIHPARIEEVVKKTRKQIEEEIIDIGKRT 306

Query: 302 IDAQLNHGITVKPSELIPLEDYTQAYGVEQGTELYNLQQFKSVAAPDV 349
           +     HG+  +  +++    Y  +YG         + +   V A ++
Sbjct: 307 VIDLGIHGLQPELIKMVGRMKYRSSYGQNLLQHSREVAKLCGVMAAEL 354


>gi|268530936|ref|XP_002630594.1| C. briggsae CBR-AKA-1 protein [Caenorhabditis briggsae]
          Length = 1305

 Score = 38.7 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 40/326 (12%), Positives = 92/326 (28%), Gaps = 35/326 (10%)

Query: 109 SISHRDVRKKFQAQVEHDIRDYHTKGVDIQIGATQRAQEDNLNMTVGLAAAHVLHDPSNE 168
           S+S  + +    +  +   RD+  +  D  I      +     MT  L    + +DP+ +
Sbjct: 225 SLSEPETQNNDTSTRKAGGRDFSDESSDESILFQYADKISEEVMTAALGTRKLHYDPAVQ 284

Query: 169 NYFQRVQSITDHINSLPIDLRLKQKLL--SEAKEKLNTNQIIGAHARDPRVFENFMRAFY 226
            ++    SI D           ++  L    + +   T       +   +V +       
Sbjct: 285 EFYHANDSIPDVFAMSFASTTSRKSELNNDTSNQLSGTENKQKLPSVVEQVEQAEESEKE 344

Query: 227 KKGHPPKDSTSLS-----DVSDSARERSLEVVEDVSKAIGLAGWDRLDDTKRRRLLEH-- 279
            +    +D++        D  DS+ +    V  +      L  +  +        +E   
Sbjct: 345 NEPDEQQDNSESDCSLKHDKEDSSPQN---VESETVHMTSLEQYPEVSLLTDVISVEEEI 401

Query: 280 ----------LSSRDNALNTKLRKETQAQARRIDAQLNHGITVKPSELIPLEDYTQAYGV 329
                     + S+D       +         I  + N  +  K SE     +   +   
Sbjct: 402 AASDISGDCSMDSKDTEQPVVEQPSINDSEDNIATEANTPVVEKNSEEKVTSETVDSMPS 461

Query: 330 EQGTEL-YNLQQFKSVAAPDV----------ARIKLMSTFDAKKFLQKIDDEYISNPSLS 378
           +        + +     AP            + ++ +S       +   +DE  + P   
Sbjct: 462 DDDESAPETVVEAVGFKAPTTDEEENREDADSIVESVSNDSQDSLVGTTEDETENRP--R 519

Query: 379 LASTMMATKYKEILEKSHRQSMQELN 404
             S++         +    Q  +E  
Sbjct: 520 FDSSIATVHVLHESDSDESQPRRERR 545


>gi|47215513|emb|CAG01175.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1504

 Score = 38.7 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 57/383 (14%), Positives = 131/383 (34%), Gaps = 33/383 (8%)

Query: 126 DIRDYHTKGVDIQIGATQRAQEDNLNMTVGLAAAHVLHDPSNENYFQRVQSITDHIN--S 183
           +I     + ++ + G      ED +     L   + +    N+N   RV+++ + I+   
Sbjct: 404 EIARLQMELMEYKTGKRL-VGEDGMEGMNDLVHENSMLQTENDNLRVRVKAMQETIDAQR 462

Query: 184 LPIDLRLKQKLLSEAKEKLNTNQIIGAHARD-PRVFENFMRAFY-----KKGHPPKDSTS 237
             +   L  +      +    N+ IG   ++  +  E            + G   +    
Sbjct: 463 ARLTQILSDQAYQAMAKAGEGNEEIGNMIQNYIKEIEELSVNREEAPDNESGAKQRRRGR 522

Query: 238 LSDVSDSARERSLEVVEDVSKAIGLAGWDRLDDT---KRRRLLEHLSSRDNA--LNTKLR 292
             + SD       E  ED     G    +  D     ++  +   L++      +  KL 
Sbjct: 523 GGEGSDHDEGEDAEAEEDEYDLAGDETSEDSDSEELDEKEDVQADLANITCEIAIKQKLI 582

Query: 293 KETQAQARRIDAQLNHGITVKPSE-LIPLEDYTQAYGVEQGTELYNLQQFKSVAAPDVAR 351
            E +   RR+     H +  +  + L+ L++  +   +E+   L+N+   +S       +
Sbjct: 583 DELENSQRRL-----HTLKQQYEQKLMMLQNKIRDTQLERDKVLHNIGSVESGMEEKAKK 637

Query: 352 IKLMSTFDAKKFLQKIDDEYISNPSL--SLASTMMATKYKEILEKSHRQSMQELNQDAIS 409
           I+     + ++ L  ++ E     S     A  +      E   K  +  + E+ +  ++
Sbjct: 638 IR----VEYERKLSSMNKELQKLQSAQREHARLLKNQSQYEKQLKKLQMDVTEMKKTKVT 693

Query: 410 WGIKYKQIDPLRFDTEESFADSLRQRAGFVKKIKDDYNLTTSHFNKTEENQLRTQLVKRP 469
                  +  +R   + + A   R+       +K D         + E  + + +L+ R 
Sbjct: 694 ------LMRQMREQQDRNRAAECRRNREIA-SLKKDQRRAEYQLKQMEAQKRQQELMLRR 746

Query: 470 ASESVDLIRGAYNTLSDSDKEGV 492
            +E V  +R     +S +    V
Sbjct: 747 KNEEVTALRRQVRPVSGTVSRKV 769


>gi|312211071|emb|CBX91157.1| similar to nuclear matrix protein [Leptosphaeria maculans]
          Length = 696

 Score = 38.7 bits (88), Expect = 3.9,   Method: Composition-based stats.
 Identities = 39/309 (12%), Positives = 89/309 (28%), Gaps = 44/309 (14%)

Query: 316 ELIPLEDYT--QAYGVEQGTELYNLQQFKSVAAPDVARIKLMSTFDAKKFLQKIDDEYIS 373
           +  PL D +     G      +   + F   +      +  +   D  K +     E  S
Sbjct: 196 QSFPLGDKSSVNLRGNFHVENVTTFEDFLKES----NEVDDLMEVDHDKTVPTATGESAS 251

Query: 374 NPSLSLASTMMATKYKEILEKSHRQSMQELNQDAISWGIKYKQIDPLRFDTEESFADSLR 433
              +  + T  +T  K  L+              + W +++   +P R   E++F     
Sbjct: 252 EHEVLSSETTKSTDAKSTLDFDALY--------PVFWSLQHSFSNPPRLFEEDNFKQF-- 301

Query: 434 QRAGFVKKIKDDYNLTTSHFNKTEENQLRTQLVKRPASESVDLIRGAYNTLSDSDKEGVR 493
            R      +     +     +   E +   +L           +    + L+ +      
Sbjct: 302 -RTSLDATLAKFKEVPKVIQSGDSERKKGQKL----------HLDDDQDALTSTFNPKYL 350

Query: 494 SSFAHIE----------DNGLSAVVRLSSEFSDDAKNAAMVILSGMKH--QKDTETRYNT 541
           +S    +             + A++ +    +              +   Q +   R + 
Sbjct: 351 TSRDLFKLELSDLAFQRHILVQALILIDFLLTLTEDAKKQPFYQNAQKAMQYNFTLREDD 410

Query: 542 DHKSNKFDSLYDSYINT-PLTKLEQSTAGGNFNKDKEAIKLYLLGSMKDSGNYTLNRVRV 600
              +    S   +Y+   P  K          ++DK  ++      M++   +T +RV  
Sbjct: 411 TKWALGIKSAIANYLQEDPDGKFYYRMVDTVLSRDKNWVRW----KMENCQPFTRDRVAA 466

Query: 601 SDAMQIVLG 609
            D +Q   G
Sbjct: 467 KDFLQAKSG 475


>gi|160886551|ref|ZP_02067554.1| hypothetical protein BACOVA_04562 [Bacteroides ovatus ATCC 8483]
 gi|156108436|gb|EDO10181.1| hypothetical protein BACOVA_04562 [Bacteroides ovatus ATCC 8483]
          Length = 1052

 Score = 38.3 bits (87), Expect = 4.1,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 68/202 (33%), Gaps = 7/202 (3%)

Query: 50  RDNAFATANT--RYTELSFKAVQDFHDFTNSLDTRDSLQAGDKIKEYVDGRIRSAYDRFL 107
           R   F  A T   Y E+S + V    +   +L   +  +  + ++E ++ + R + D   
Sbjct: 733 RTEFFKKALTLNEYIEMSLEEVAQRIEIMKNLPKIEKEEQENLLEEIIEYQKRISVDAEY 792

Query: 108 SSISHRDVRKKFQAQVEHDIRDYHTKGVDIQIGATQRAQEDNLNMTVGLAAAHVLHDPSN 167
            +I H +  K+    +E D+ D      +   G T    E  L          +      
Sbjct: 793 KTIKHINSLKQKLLILERDLADNMVSCRNRMDGMTTADIEKGLAEVEQRIKNIMSLPKIR 852

Query: 168 ENYFQR-VQSITDHINSLPIDLRLKQKLLSEAKEKLNTNQIIGAHARDPRVFENFMRAFY 226
            N  ++ ++ I +  + +  D+  +     +  ++       G           + + FY
Sbjct: 853 TNELEKSLKKIIEDKDKIRTDIEYQTTTQIDKLKEKLLKLENGL----ADCIAPYSQTFY 908

Query: 227 KKGHPPKDSTSLSDVSDSARER 248
           ++         +  + +    R
Sbjct: 909 EQYAAVGHEEKIKSLKEKVDGR 930


>gi|46446033|ref|YP_007398.1| putative eucaryotic myosin heavy chain [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46399674|emb|CAF23123.1| putative eucaryotic myosin heavy chain [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 840

 Score = 38.3 bits (87), Expect = 4.1,   Method: Composition-based stats.
 Identities = 51/281 (18%), Positives = 104/281 (37%), Gaps = 32/281 (11%)

Query: 18  QDAVRDSVNPQAGLRDLGDALGKATQFLEGIRRDNAFATANTRYTELSFKAVQDFHDFTN 77
           Q+  +  V+ +A  RDLG          + IR      + + +  + + +A+Q       
Sbjct: 156 QELNQKRVDLEAARRDLGSLTPNLNALQKDIRSLEEKKSQDEQALQQANQALQ------- 208

Query: 78  SLDTRDSLQAGDKIKEYVDGRIRSAYDRFLSSISHRDVR-KKFQAQVEHDIRDYHTKGVD 136
                 +LQ     +E   G +       LS I+  +   KK   QVE + +D  +K   
Sbjct: 209 ------NLQREKASREAQAGDLELEKTTLLSKIAEIEASLKKALEQVEQERKDNASKENT 262

Query: 137 IQIGATQRAQEDNLNMTVGLAAAHVLHDPSNENYFQRVQSITDHINSLPIDLRLKQKLLS 196
           I +    +  E  LN  +     + L +   +   Q  Q++ +           ++K   
Sbjct: 263 I-VALQGQLTE--LNKQLSTLNRNHLKNEDEQALQQANQALQN---------LQREKASR 310

Query: 197 EAKEKLNTNQIIGAHARDPRVFENFMRAFYKKGHPPKDSTSLSDVSDSARERSLEVVEDV 256
           EA+ +    +     ++   +  +  +A  +     KD+ S  +     + +  E+ + +
Sbjct: 311 EAQAEELELEKTTLLSKIAEIEASLKKALEQAEQERKDNASKENTIVDLQGQLTELNKQL 370

Query: 257 SKAIGLAGWDRLDDTKRRRLLEHLSSRDNALNTKLRKETQA 297
           S        + LD  K     E L ++  +L  +L +E QA
Sbjct: 371 STL-NRNHQEHLDQEK-----EDLKNQLESLKRQLNEERQA 405


>gi|115943067|ref|XP_001195605.1| PREDICTED: similar to dystonin [Strongylocentrotus purpuratus]
          Length = 3054

 Score = 38.3 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 57/405 (14%), Positives = 130/405 (32%), Gaps = 55/405 (13%)

Query: 11   VEAVTPNQDAVRDSVNPQAGLRDLGDALGKATQFLEGIRRDNAFATANTRYTELSFKAVQ 70
            V  V    D +++  +          +  + +Q  + +   N F    + + +   KA Q
Sbjct: 1188 VSDVQQKLDHIQNRYD-----NIFQKSEDQLSQLQQAVPLANEFNRLQSEFADWLKKAEQ 1242

Query: 71   DFHDFTNSLDTRDSLQAGDKIKEYVDGRIRSAYDRFLSS------ISHRDVRKKFQAQVE 124
            D  +F  S          +K+++ +D R R               +S      + + Q+ 
Sbjct: 1243 DLRNFDPSASVETQKAVQEKLQDEID-RHRPILQELNEKGTRLIELSPGQGAAEIRQQLN 1301

Query: 125  HDIRDY-----HTKGVDIQIGATQRAQEDNLNMTVGLAAAHVLHDPSNENYFQRVQSITD 179
             D + +      TK ++ ++ A     +          +   L    +E   Q+     +
Sbjct: 1302 DDNQRFNELASRTKDIEYRLSAALDGAQK------VQQSMDGLLKWLDEADRQQQTQARE 1355

Query: 180  HINSLPI---DLRLKQKLLSE--------AKEKLNTNQIIGAHARDPRVFENFMRAFYKK 228
             I+  P    D   K K + +         ++ L   + +     DPR            
Sbjct: 1356 TISVEPDGVRDQLKKAKAIDKEITGKQSRVQDTLGAAEALIEQTSDPRQQARLESQANDL 1415

Query: 229  GHPPKDSTSLS----DVSDSARERSLEVVEDVSKAIGL--AGWDRLDDTKRRRLLEHLSS 282
                 D ++ S    +V + A  ++L+  E   +           L + K   L      
Sbjct: 1416 KQRFDDLSARSADRVEVLEEALPQTLQFNESHEELTKWLDEVEGDLKNLKPPGLDAEEIR 1475

Query: 283  RDNALNTKLRKETQAQARRID---------AQLNHGITVKPSELIPLEDYTQAYG----- 328
            R+   N  +++    + + ++         A+L+ G   +  +    +D  +        
Sbjct: 1476 REVDNNRFMKQTVAEKQQHVNKLNRIAPELAKLSPGAGAQGVQAKADDDNRRYENVKEDV 1535

Query: 329  VEQGTELYNLQQFKSVAAPDVARIKLMSTFDAKKFLQKIDDEYIS 373
             ++G ++++L Q  S    D+          A+K L + +     
Sbjct: 1536 NKRGEKMFDLLQRTSSFVEDLDSTLEQLNITAEK-LSRPEPISAD 1579


>gi|297463001|ref|XP_605047.5| PREDICTED: myosin, heavy polypeptide 15 [Bos taurus]
          Length = 2004

 Score = 38.3 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 51/320 (15%), Positives = 114/320 (35%), Gaps = 29/320 (9%)

Query: 46   EGIRRDNAFATANTRY---TELSFKAVQDFHDFTNSLDT---RDSLQAGDKIKEYVDGRI 99
            + I+R      A  +     + + +A+   +    SL+    R  L+ GD + +   G+ 
Sbjct: 1372 DTIQRAEDLEDAKKKLALRLQEAAEAMGVANARNASLERARLRLQLELGDTLSDL--GQA 1429

Query: 100  RSAYDRFLSSISHRDV------RKKFQAQVEHDIRDYHTKGVDIQIGATQRAQEDNLNMT 153
            RSA         H D       RK  ++Q   D      + + IQ+   + + E+     
Sbjct: 1430 RSAAAALNQKQQHFDKSLDDWRRKHEESQAMLDAAKKEARALSIQLLELRHSYEEGTMSQ 1489

Query: 154  VGLAAAHVLHDPSNENYFQRVQSITDHINSLPIDLRLKQKLLSEAKEKLNTNQIIGAHAR 213
              L   +        N   +V+      N   ++   KQ    + + ++   +  GA  R
Sbjct: 1490 EALRRENKHLKEEISNLTNQVR--EGKKNLSKMEKVKKQIEQEKNEVQMALEEAEGALER 1547

Query: 214  DPRVFENFMRAFYKKGHPPKDSTS-LSDVSDSARERSLEVVEDVSKAIGLAGWDRLDDTK 272
            +                  +   S   +  ++ R++    ++ +  ++      R++ T+
Sbjct: 1548 NESKVLRLQLELSDTKAELERKLSEKDEEIENFRKKQQCAIDSLQSSLDSEARCRIEATR 1607

Query: 273  RRRLLE----------HLSSRDNALNTKLRKETQAQARRIDAQLNHG--ITVKPSELIPL 320
             +R +E            +SR  +  TK   + Q Q + +  Q++    +  +  E + +
Sbjct: 1608 LKRSMEGDLTEMELQLSCASRQASEATKSLGQLQTQVKDLQVQVDDSTCMNSELKEQVAV 1667

Query: 321  EDYTQAYGVEQGTELYNLQQ 340
             +   A    +  EL +LQ+
Sbjct: 1668 AERRNALLQAEVEELRSLQE 1687


>gi|297470826|ref|XP_002684783.1| PREDICTED: KIAA1000 protein-like [Bos taurus]
 gi|296491471|gb|DAA33524.1| KIAA1000 protein-like [Bos taurus]
          Length = 2004

 Score = 38.3 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 51/320 (15%), Positives = 114/320 (35%), Gaps = 29/320 (9%)

Query: 46   EGIRRDNAFATANTRY---TELSFKAVQDFHDFTNSLDT---RDSLQAGDKIKEYVDGRI 99
            + I+R      A  +     + + +A+   +    SL+    R  L+ GD + +   G+ 
Sbjct: 1372 DTIQRAEDLEDAKKKLALRLQEAAEAMGVANARNASLERARLRLQLELGDTLSDL--GQA 1429

Query: 100  RSAYDRFLSSISHRDV------RKKFQAQVEHDIRDYHTKGVDIQIGATQRAQEDNLNMT 153
            RSA         H D       RK  ++Q   D      + + IQ+   + + E+     
Sbjct: 1430 RSAAAALNQKQQHFDKSLDDWRRKHEESQAMLDAAKKEARALSIQLLELRHSYEEGTMSQ 1489

Query: 154  VGLAAAHVLHDPSNENYFQRVQSITDHINSLPIDLRLKQKLLSEAKEKLNTNQIIGAHAR 213
              L   +        N   +V+      N   ++   KQ    + + ++   +  GA  R
Sbjct: 1490 EALRRENKHLKEEISNLTNQVR--EGKKNLSKMEKVKKQIEQEKNEVQMALEEAEGALER 1547

Query: 214  DPRVFENFMRAFYKKGHPPKDSTS-LSDVSDSARERSLEVVEDVSKAIGLAGWDRLDDTK 272
            +                  +   S   +  ++ R++    ++ +  ++      R++ T+
Sbjct: 1548 NESKVLRLQLELSDTKAELERKLSEKDEEIENFRKKQQCAIDSLQSSLDSEARCRIEATR 1607

Query: 273  RRRLLE----------HLSSRDNALNTKLRKETQAQARRIDAQLNHG--ITVKPSELIPL 320
             +R +E            +SR  +  TK   + Q Q + +  Q++    +  +  E + +
Sbjct: 1608 LKRSMEGDLTEMELQLSCASRQASEATKSLGQLQTQVKDLQVQVDDSTCMNSELKEQVAV 1667

Query: 321  EDYTQAYGVEQGTELYNLQQ 340
             +   A    +  EL +LQ+
Sbjct: 1668 AERRNALLQAEVEELRSLQE 1687


>gi|313159585|gb|EFR58948.1| YmdA/YtgF family protein [Alistipes sp. HGB5]
          Length = 550

 Score = 38.3 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 38/300 (12%), Positives = 89/300 (29%), Gaps = 14/300 (4%)

Query: 57  ANTRYTELSFKAVQDFHDFTNSLDTRDSLQAGDKIKEYVDGRIRSAYDRFLSSISHRDVR 116
           A  ++ +L  +  +  ++    +    S Q   +I+  +  + R   ++        + R
Sbjct: 92  AKEKFIQLKSEYDRQVNERNQKI--AQSEQRAKQIENNLQNQQRDLENKLRE-----NDR 144

Query: 117 KKFQAQVEHDIRDYHTKGVDIQIGATQRAQEDNLNMTVGLAAAHVLHDPSNENYFQRVQS 176
            K Q Q +  I ++  + VD  +       E    ++   A   ++ +   E   +    
Sbjct: 145 LKEQMQNQLQILEHKKEEVDQMMREQNVRLEQISGLSSEEAKNILIENMKAEAKTEAAGY 204

Query: 177 ITDHINSLPIDLRLKQKLL------SEAKEKLNTNQIIGAHARDPRVFENFMRAFYKKGH 230
           I + I    +    + K +        A E    N +   +     V    +    +   
Sbjct: 205 INETIEEAKMTATKEAKRIIVASIQRVATETAIENAVTVFNIESDEVKGRIIGREGRNIR 264

Query: 231 PPKDSTSLSDVSDSARERSL-EVVEDVSKAIGLAGWDRLDDTKRRRLLEHLSSRDNALNT 289
             + +T +  + D   E  +    + V + I      +L    R                
Sbjct: 265 ALEAATGIEIIVDDTPEAIILSGFDPVRREIARLALHQLVTDGRIHPARIEEVVAKVQKQ 324

Query: 290 KLRKETQAQARRIDAQLNHGITVKPSELIPLEDYTQAYGVEQGTELYNLQQFKSVAAPDV 349
              +  +   R       HG+  +   +I    Y  +YG               + A ++
Sbjct: 325 IEEEIVEVGKRTTIDLGIHGLHPELIRMIGKMKYRSSYGQNLLQHARETANLAGIMAAEL 384


>gi|255100181|ref|ZP_05329158.1| putative integrase/recombinase [Clostridium difficile QCD-63q42]
          Length = 188

 Score = 38.3 bits (87), Expect = 5.2,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 40/130 (30%), Gaps = 7/130 (5%)

Query: 84  SLQAGDKIKEYVDGRIRSAYDRFLS-------SISHRDVRKKFQAQVEHDIRDYHTKGVD 136
               G +I + +  +I +     L         + +R V K     +    R Y+ K  D
Sbjct: 46  EANLGLRISDILRLKIGNFKGNMLEINEKKTGKLQYRPVNKNIIESINEHARKYNLKSND 105

Query: 137 IQIGATQRAQEDNLNMTVGLAAAHVLHDPSNENYFQRVQSITDHINSLPIDLRLKQKLLS 196
             +    +A +  L +       + +   S    +   Q    + N   +   L    ++
Sbjct: 106 YLVNIKTKAIQKQLRIICKYLNLYNISTHSFRKLYATTQFEKSNNNLELVKELLNHSSVA 165

Query: 197 EAKEKLNTNQ 206
             +  +   Q
Sbjct: 166 TTQRYIRVTQ 175


>gi|126698762|ref|YP_001087659.1| putative integrase/recombinase [Clostridium difficile 630]
 gi|115250199|emb|CAJ68020.1| putative integrase/recombinase [Clostridium difficile]
          Length = 190

 Score = 37.9 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 40/130 (30%), Gaps = 7/130 (5%)

Query: 84  SLQAGDKIKEYVDGRIRSAYDRFLS-------SISHRDVRKKFQAQVEHDIRDYHTKGVD 136
               G +I + +  +I +     L         + +R V K     +    R Y+ K  D
Sbjct: 48  EANLGLRISDILRLKIGNFKGNMLEINEKKTGKLQYRPVNKNIIESINEHARKYNLKSND 107

Query: 137 IQIGATQRAQEDNLNMTVGLAAAHVLHDPSNENYFQRVQSITDHINSLPIDLRLKQKLLS 196
             +    +A +  L +       + +   S    +   Q    + N   +   L    ++
Sbjct: 108 YLVNIKTKAIQKQLRIICKHLNLYNISTHSFRKLYATTQFEKSNNNLELVKELLNHSSVA 167

Query: 197 EAKEKLNTNQ 206
             +  +   Q
Sbjct: 168 TTQRYIRVTQ 177


>gi|288959380|ref|YP_003449721.1| hypothetical protein AZL_025390 [Azospirillum sp. B510]
 gi|288911688|dbj|BAI73177.1| hypothetical protein AZL_025390 [Azospirillum sp. B510]
          Length = 715

 Score = 37.9 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 71/464 (15%), Positives = 139/464 (29%), Gaps = 57/464 (12%)

Query: 70  QDFHDFTNSLDTRDSLQAGDKIKEYVDGRIRSAYDRFLSSISHRDVRKKFQAQVEHDIRD 129
           Q F +   S      L+AG ++ + VD     A       ++ +D           D   
Sbjct: 26  QRFTEPQQSAGGAALLRAGGQVGDAVD-----AVGNAFEKLNRQDEALTVARMRAEDRTT 80

Query: 130 YHTKGVDIQIGATQRA---QEDNLNMTVGLAAAHVLHDPSNENYFQRVQSITDHINSLPI 186
           + TK  + +  A   A       L      AA  +   PS          + D    L  
Sbjct: 81  WSTKFNEAKEKADIGAPDFTSGFLKDFDAYAAERLAAAPSPLARRDVEMGLIDLRGRLAE 140

Query: 187 DLRLKQKLLSEAKEKLNTNQII----GAHARDPRVFENFMRAFYKK----GHPP-----K 233
           +    +     AK + +  QI     G  ARD R F   +          G PP     +
Sbjct: 141 EGLQFEAGARLAKRRGDVEQIRSLNGGLLARDHRDFATVLADTENSIRTLGLPPAVQAQE 200

Query: 234 DSTSLSDVSDSARERSLEVVEDVSKAIGLAG-WDRLDDTKRRRLLEHLSSRDNALNTKLR 292
              + +  +++A           +     +G WD      R   L   ++ ++       
Sbjct: 201 IEATRATFAETALMGLASRDPAAAMTAIKSGAWDGYTQPDRLVRLYDHANTEDRRRRNEA 260

Query: 293 KETQAQARRIDAQLNHGITVKPSEL------------IPLEDYTQAYGVEQGTELYNLQQ 340
           +   A+AR     +   +  +  +             IP      AYG E+G +++   +
Sbjct: 261 RAAAAEARAEARSI---LEPQYRDAFAAAQDGAAFTPIPEARLVNAYGPERGRQMFAELE 317

Query: 341 FKSVAAPDVARIKLMSTFDAKKFLQKIDDEYISNPSL-----SLASTMMATKYKEILEKS 395
                  DV  + ++      + L     +             LA  +   +       +
Sbjct: 318 ATRKLGQDVKTVAMVPPDVQDRLLASYAPDGAGYAGERERYGELARAVARDRKNREDPAA 377

Query: 396 HRQSMQELNQDAISWGIKYKQIDPLRFDTEESFADSLRQRAGFVKKIKDDYNLTTSHFNK 455
           +  S     +D ++      + DP +     + + +L+  AG  +  +    ++      
Sbjct: 378 YVLSNSSKLRDLVAGA----RTDPTKAQAAVALSLTLQADAGIPEVDRRILPVS---MAD 430

Query: 456 TEENQLRTQLVKRPASESVDLIRGAYNTLSDSDKEGVRSSFAHI 499
           T   QL T   +  A         A   ++ +  E     F  +
Sbjct: 431 TAARQLATLPPEARA--------DAVEGMAATYGEHWPRVFREL 466


>gi|254974701|ref|ZP_05271173.1| putative integrase/recombinase [Clostridium difficile QCD-66c26]
 gi|255092090|ref|ZP_05321568.1| putative integrase/recombinase [Clostridium difficile CIP 107932]
 gi|255306070|ref|ZP_05350242.1| putative integrase/recombinase [Clostridium difficile ATCC 43255]
 gi|255313827|ref|ZP_05355410.1| putative integrase/recombinase [Clostridium difficile QCD-76w55]
 gi|255516508|ref|ZP_05384184.1| putative integrase/recombinase [Clostridium difficile QCD-97b34]
 gi|255649608|ref|ZP_05396510.1| putative integrase/recombinase [Clostridium difficile QCD-37x79]
 gi|255655168|ref|ZP_05400577.1| putative integrase/recombinase [Clostridium difficile QCD-23m63]
 gi|260682772|ref|YP_003214057.1| putative integrase/recombinase [Clostridium difficile CD196]
 gi|260686370|ref|YP_003217503.1| putative integrase/recombinase [Clostridium difficile R20291]
 gi|296451156|ref|ZP_06892897.1| phage integrase family site-specific recombinase [Clostridium
           difficile NAP08]
 gi|296880492|ref|ZP_06904454.1| phage integrase family site-specific recombinase [Clostridium
           difficile NAP07]
 gi|306519731|ref|ZP_07406078.1| putative integrase/recombinase [Clostridium difficile QCD-32g58]
 gi|260208935|emb|CBA61947.1| putative integrase/recombinase [Clostridium difficile CD196]
 gi|260212386|emb|CBE03222.1| putative integrase/recombinase [Clostridium difficile R20291]
 gi|296259977|gb|EFH06831.1| phage integrase family site-specific recombinase [Clostridium
           difficile NAP08]
 gi|296428446|gb|EFH14331.1| phage integrase family site-specific recombinase [Clostridium
           difficile NAP07]
          Length = 188

 Score = 37.9 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 40/130 (30%), Gaps = 7/130 (5%)

Query: 84  SLQAGDKIKEYVDGRIRSAYDRFLS-------SISHRDVRKKFQAQVEHDIRDYHTKGVD 136
               G +I + +  +I +     L         + +R V K     +    R Y+ K  D
Sbjct: 46  EANLGLRISDILRLKIGNFKGNMLEINEKKTGKLQYRPVNKNIIESINEHARKYNLKSND 105

Query: 137 IQIGATQRAQEDNLNMTVGLAAAHVLHDPSNENYFQRVQSITDHINSLPIDLRLKQKLLS 196
             +    +A +  L +       + +   S    +   Q    + N   +   L    ++
Sbjct: 106 YLVNIKTKAIQKQLRIICKHLNLYNISTHSFRKLYATTQFEKSNNNLELVKELLNHSSVA 165

Query: 197 EAKEKLNTNQ 206
             +  +   Q
Sbjct: 166 TTQRYIRVTQ 175


>gi|332292808|ref|YP_004431417.1| metal dependent phosphohydrolase [Krokinobacter diaphorus 4H-3-7-5]
 gi|332170894|gb|AEE20149.1| metal dependent phosphohydrolase [Krokinobacter diaphorus 4H-3-7-5]
          Length = 521

 Score = 37.9 bits (86), Expect = 5.9,   Method: Composition-based stats.
 Identities = 43/330 (13%), Positives = 99/330 (30%), Gaps = 33/330 (10%)

Query: 38  LGKATQFLEGIRRDNAFATANTRYTELSFKAVQDFHDFTNSLDTRDSLQAGDKIKEYVDG 97
           L +AT   E +++D     A  ++ EL  +  +        ++  D+ +     +  V G
Sbjct: 45  LKEATSDGESLKKDKILQ-AKEKFIELKAEHEKVILSRDKKMN--DAEKRARDKESQVSG 101

Query: 98  RIRSAYDRFLSSISHRDVRKKFQAQVEHDIRDY--HTKGVDIQIGATQRAQEDNLNMTVG 155
            +                 KK    +E  I+DY    + VD +    ++  E  +     
Sbjct: 102 ELSR--------------NKKLNQSLEDKIKDYDKRLEYVDKKKAEAEKMHESTVQQLEV 147

Query: 156 LAAAH----------VLHDPSNENYFQRVQSITDHINSLPIDLRLK---QKLLSEAKEKL 202
           ++              L D +  +  + VQ+  +           K     +     E+ 
Sbjct: 148 ISGLSAEEAKSQLVTTLKDQAKADAMKHVQTAIEEAKMTAEQEAKKIIINTIQRIGTEEA 207

Query: 203 NTNQIIGAHARDPRVFENFMRAFYKKGHPPKDSTSLSDVSDSARERSL-EVVEDVSKAIG 261
             N +   +     V    +    +     + +T +  + D   E  +    + V + + 
Sbjct: 208 VENCVSVFNLESDDVKGRIIGREGRNIRAIEAATGVEIIVDDTPEAIILSCFDSVRREVA 267

Query: 262 LAGWDRLDDTKRRRLLEHLSSRDNALNTKLRKETQAQARRIDAQLNHGITVKPSELIPLE 321
                +L    R                  ++  +   R +     HG+  +  + +   
Sbjct: 268 RLSLHKLVTDGRIHPARIEEVVQKTTKQIEQEIVEVGKRTVIDLGIHGLHPELIKAVGRM 327

Query: 322 DYTQAYGVEQGTELYNLQQFKSVAAPDVAR 351
            Y  +YG         + +  SV A ++  
Sbjct: 328 KYRSSYGQNLLQHSREVAKLCSVMAAELGV 357


>gi|229497008|ref|ZP_04390713.1| conserved hypothetical protein [Porphyromonas endodontalis ATCC
           35406]
 gi|229316110|gb|EEN82038.1| conserved hypothetical protein [Porphyromonas endodontalis ATCC
           35406]
          Length = 521

 Score = 37.9 bits (86), Expect = 5.9,   Method: Composition-based stats.
 Identities = 48/340 (14%), Positives = 102/340 (30%), Gaps = 44/340 (12%)

Query: 37  ALGKATQFLEGIRRDNAFATANTRYTELSFKAVQDFHDFTNSLDTRDSLQAGDKIKEYVD 96
            L +A + +E +R+D     A      L  + +++       L      +   +      
Sbjct: 33  KLAEAKREIERLRKD-----ARREADALEKEKMKELKQKFQGLKEELERETKQR------ 81

Query: 97  GRIRSAYDRFLSSISHRD-------------------VRKKFQAQVEHDIRDYHTKGVDI 137
               SA+D   + +  R+                   VR+   AQ   D+ ++  + ++ 
Sbjct: 82  ---NSAFDSRHTKLKRREEDLNERQCELEKKNGELDAVREMLTAQ--QDVVEHRQEELN- 135

Query: 138 QIGATQRAQEDNLNMTVGLAAAHVLHDPSNENYFQRVQSITDHIN---SLPIDLRLK--- 191
           ++ A QR Q +++       A   L +           +  + I     +  +   K   
Sbjct: 136 ELIAQQRNQLEHIGGLSATEAKEQLIETMRAEAQDEATAYVNEIVEEAKMTANKEAKRIV 195

Query: 192 -QKLLSEAKEKLNTNQIIGAHARDPRVFENFMRAFYKKGHPPKDSTSLSDVSDSARER-S 249
            Q +   A E    N +   H  +  +    +    +     + +T +  + D   E   
Sbjct: 196 VQSIQRVATETAIENSVSVFHIDNDEIKGRIIGREGRNIRALEAATGIEIIVDDTPEAIV 255

Query: 250 LEVVEDVSKAIGLAGWDRLDDTKRRRLLEHLSSRDNALNTKLRKETQAQARRIDAQLNHG 309
           L   + V + I      +L    R                   +  +   R +     HG
Sbjct: 256 LSGFDPVRREIARLALHQLVQDGRIHPARIEEVVAKVRKQVEEEIIETGKRTVIDLGVHG 315

Query: 310 ITVKPSELIPLEDYTQAYGVEQGTELYNLQQFKSVAAPDV 349
           I  +   LI    Y  +YG              ++ A ++
Sbjct: 316 IHPELVRLIGKMKYRSSYGQNLLQHSRETANLCAIMASEL 355


>gi|67921510|ref|ZP_00515028.1| Protein of unknown function DUF814:Fibronectin-binding A,
           N-terminal [Crocosphaera watsonii WH 8501]
 gi|67856622|gb|EAM51863.1| Protein of unknown function DUF814:Fibronectin-binding A,
           N-terminal [Crocosphaera watsonii WH 8501]
          Length = 578

 Score = 37.9 bits (86), Expect = 6.0,   Method: Composition-based stats.
 Identities = 20/162 (12%), Positives = 56/162 (34%), Gaps = 9/162 (5%)

Query: 85  LQAGDKIKEYVDGRIRSAYDRFLSSISHRDVRKKFQAQVEHDIRDYHTKGVDIQIGATQR 144
           ++    I+  +D      Y + ++    + ++ + Q +++  ++  + K  + Q    Q 
Sbjct: 266 IEPKINIQTLIDN----YYTKEINQEKFKQLKHQLQQKLKSCLKKLYNKANNFQQKMEQS 321

Query: 145 AQEDNLNMTVGLAAAHVLHDPSNENYFQRVQSITDHINSLPIDLRL----KQKLLSEAKE 200
           ++ +       L  AH        N        TD    +P++         + L +  +
Sbjct: 322 SEAEEYRQKGDLLMAHSYQWEPGMNSMTLKDFETDKPIKIPLNPEKNAIQNAQNLYKKHQ 381

Query: 201 KLNTNQ-IIGAHARDPRVFENFMRAFYKKGHPPKDSTSLSDV 241
           KL   +  +    ++ +   N++           +  S  D+
Sbjct: 382 KLKRAKGAVEPLLKEVQEEINYLEQVEDSLQQIDNYNSPEDL 423


>gi|145553261|ref|XP_001462305.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124430144|emb|CAK94932.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1564

 Score = 37.5 bits (85), Expect = 7.8,   Method: Composition-based stats.
 Identities = 72/566 (12%), Positives = 182/566 (32%), Gaps = 53/566 (9%)

Query: 54   FATANTRYTELSFKAVQDFHDFTNSL---------DTRDSLQAGDKIKEYVDGRIRSAYD 104
            F   +T    +    ++D ++    L         + +  LQ    + + V+  + S   
Sbjct: 468  FTEVSTNLKNIKGDQIKDKNELQEGLKKITNDVENNDKKQLQLMKNLDQKVNQGLNSQEF 527

Query: 105  RFLS-SISHRDVRKKFQAQVEHDIRDYHTKGVDIQIGATQRAQEDNLNMTVGLAAAHVLH 163
            +     I   ++ K  Q Q    + +        QI       + +    V  ++  +  
Sbjct: 528  KLDQLRIELSEIIKNIQLQYNIQMHE--------QIQFAIETAKKDATQQVLESSQQI-- 577

Query: 164  DPSNENYFQRVQSITDHINSLPIDLRLKQKLLSEAKEKLNTNQIIGAHARDPRVFENFMR 223
               N+   + ++      N+    L ++ K L   +E+    ++      +  + +    
Sbjct: 578  ---NDRITREIEMADQQTNAKLDSLSIQMKDLIRNREEYILQRLQSMIDEEKELRQRLQE 634

Query: 224  AFYKKGHPPKD-STSLSDVSDSARERSLEVVEDVSKAIGLAGWDRLDDTKRRRLLEHLSS 282
               K G   +     L       R    E + +  + I     +++ D +R+   E L+S
Sbjct: 635  LIEKYGDMVRKLKEDLDYEMQQLRRDQDEKLNEAIQKIERDYSEKVKDIERQLKQEILNS 694

Query: 283  RDNALNTKLRKETQAQARRIDAQLNHGITVKPSELIPLEDYTQAYGVEQGTEL-YNLQQF 341
                         Q +   +  + +  +      +  +E+  ++Y  ++  +  ++L+  
Sbjct: 695  ---------ENRMQTKLDVLSLEFSKTMEQMKLYIKKIENTLKSYVQQELEQTKHDLKMM 745

Query: 342  KSVAAPDVARIKLMSTFDAKKFLQKIDDEYISNPSLSLASTMMATKYKEILEKSHRQSMQ 401
                  DV ++++ +    +K    + + +I   +      M      E  ++     M 
Sbjct: 746  IKGIEDDVFKLRIWTIQQMEKMDSAMKEIHIQIQTEMYLERMYTMTTLENFQEHLINVMN 805

Query: 402  ELNQDAISWGIK-YKQIDPLRFDTEESFADSLRQRAGFVKKIKDDYNLTTSHFNKTEENQ 460
            +  QD + W      Q++ L           +      +++  DD N       +    Q
Sbjct: 806  KEKQDRLQWQFSMENQLNQLDMSLNNK----IDSVQNNLQQQLDDVNAEFKQAVQKLNEQ 861

Query: 461  LRTQLVKRPASESVDLIRGAYNTLSDSDKEGVRSSFAHIEDNGLSAVVRLSSEFSDDAKN 520
            +  QL K    +    +   +  +  + K+        + D     + +  ++F +D +N
Sbjct: 862  INEQLGKLE-EDFNQKLNDVHEQVKQAAKDLEDKINQQM-DKMNEEINQQLTQFKNDVEN 919

Query: 521  AAMVILSGMKH-------QKDTETRYNTDHKSNKFDSLYDSYINTPLTKLEQSTAGGNFN 573
                +   +K        + + +         N    +    + T L    +S    +F 
Sbjct: 920  QFQELTEKIKQDLQDLFDEINQKVNNLRVDTQNGLTQVVK--LQTTLGNQLKSQIDESFA 977

Query: 574  KDKEAIKLYLLGSMKDSGNYTLNRVR 599
              +   K YL+       N  L++ R
Sbjct: 978  YFQS--KFYLM-EQIRQANEELDKER 1000


>gi|319954135|ref|YP_004165402.1| 2,3 cyclic-nucleotide 2-phophodiesterase [Cellulophaga algicola DSM
           14237]
 gi|319422795|gb|ADV49904.1| 2,3 cyclic-nucleotide 2-phophodiesterase [Cellulophaga algicola DSM
           14237]
          Length = 523

 Score = 37.5 bits (85), Expect = 8.7,   Method: Composition-based stats.
 Identities = 40/336 (11%), Positives = 106/336 (31%), Gaps = 30/336 (8%)

Query: 32  RDLGDALGKATQFL-------EGIRRDNAFATANTRYTELSFKAVQDFHDFTNSLDTRDS 84
           + + +A  +A +FL       E I+++  F  A  ++ EL  +  +  +     +   ++
Sbjct: 32  KTIQNAKKEANRFLKDANVEGENIKKEKIFQ-AKEKFLELKAEHEKVINSKDKKI--GEA 88

Query: 85  LQAGDKIKEYVDGRI---RSAYDRFLSSISHRDVRKKFQAQVEHDIRDYH---TKGVDIQ 138
            +     +  +   +   +   D+  S I   + + +F  + + ++   H    + +++ 
Sbjct: 89  EKRTRDKESQISSELAKNKKLSDQLESQIKDVEYKHEFFDKKQSELDKLHKNQVQQLEVI 148

Query: 139 IGATQRAQE----DNLNMTVGLAAAHVLHDPSNENYFQRVQSITDHINSLPIDLRLKQKL 194
            G +    +    ++L  T    A   +     E      Q     I +          +
Sbjct: 149 SGLSAEEAKGQLLESLRETAKSDAMSYMQATMEEAKLTAQQEAKKIIINT---------I 199

Query: 195 LSEAKEKLNTNQIIGAHARDPRVFENFMRAFYKKGHPPKDSTSLSDVSDSARERSL-EVV 253
                E+   N +   +     V    +    +     + +T +  V D   E  +    
Sbjct: 200 QRIGTEEAVENCVSVFNLESDDVKGRIIGREGRNIRALEAATGVEIVVDDTPEAIILSCF 259

Query: 254 EDVSKAIGLAGWDRLDDTKRRRLLEHLSSRDNALNTKLRKETQAQARRIDAQLNHGITVK 313
           + V + +      +L    R                  ++  +   R +     HG+  +
Sbjct: 260 DSVRREVARLSLHKLVTDGRIHPARIEEIVKKTEKQIEQEIVEIGKRTVIDLGIHGLHPE 319

Query: 314 PSELIPLEDYTQAYGVEQGTELYNLQQFKSVAAPDV 349
             + +    Y  +YG         + +   V A ++
Sbjct: 320 LIKAVGRMKYRSSYGQNLLQHSREVAKLCGVMAAEL 355


>gi|123448346|ref|XP_001312904.1| viral A-type inclusion protein [Trichomonas vaginalis G3]
 gi|121894768|gb|EAX99974.1| viral A-type inclusion protein, putative [Trichomonas vaginalis G3]
          Length = 3748

 Score = 37.1 bits (84), Expect = 9.9,   Method: Composition-based stats.
 Identities = 69/522 (13%), Positives = 172/522 (32%), Gaps = 49/522 (9%)

Query: 12   EAVTPNQDAVRDSVNPQAGLRDLGDALGKATQFLEGIRRDNAFATANTRYTELSFKAVQD 71
            + +   QD ++D       L +  + L K  + L+           ++         +++
Sbjct: 857  QRIQTLQDNLQDRKKLNNELTEQNNKLQKELKDLQNELDQTELVNDDSESLNKKLDEIKE 916

Query: 72   FHDFTNSLDTRDSLQAGDKIKEYVDGRIRSAYDRFLSSISHRDV----RKKFQAQV---- 123
              +   S +  ++ Q    I+E          ++F   +   ++      K QAQ+    
Sbjct: 917  QINERKSQNENNTEQNEKLIEEI---------EKFAKELDEIEIIEDKSDKLQAQISELQ 967

Query: 124  ----EHDIRDYHTKGVDIQIGATQRAQEDNLNMTVGLAAAHVLHDPSNENYFQRVQSITD 179
                E    +  T   +  +    +  +  L+    +           EN  + ++ I D
Sbjct: 968  KQIDEKQKNNEQTDKSNNDLEHELQITKQKLDSMSSVKNNSDYLKSEIENVNKEIEKIRD 1027

Query: 180  HINSLPIDLRLKQKLLSEAKEKLNTN------------QIIGAHARDPRVFENFMRAFYK 227
              N L  +L+ K K L E  +  + +            +I    A +  + E        
Sbjct: 1028 TNNKLKQELQDKNKELEEMTDIADNSEELKEKIDSVNEEITKRVANNTTIDELIRHLHED 1087

Query: 228  KGHPPKDSTSLSDVSDSARERSLEVVEDVSKAIGLAGWDRLDDTKRRRLLEHLSSRDNAL 287
              +      S+  V D+       + E +++       +   + +  RL++    + + L
Sbjct: 1088 LKNAEAKLQSIPHVDDNTDSLQKSLDEVLAQISQKQRENDELNDEISRLIQEKEEKTDEL 1147

Query: 288  NTKL-----RKETQAQARRIDAQLNHGITVKPSELIPLEDYTQAYGVEQGTELYNLQQFK 342
            N        R+E  ++   + +Q+      K +E I  E+   A  +E   +  +  +  
Sbjct: 1148 NNMETIPDKREEISSEIETVKSQIEE--KKKNNEKIAEENKKLAEELENLRQTLSKMETS 1205

Query: 343  SVAAPDVARIKLMSTFDAKKFLQKIDDEYISNPSLSLASTMMATKYKEILEKSHRQSMQE 402
                 ++ +    +  +  +  +++D+       +       A +  E +E    Q  ++
Sbjct: 1206 DQPLENIQKEIETTKQEISEKQKELDELKQELEQIKDEDQSKADEISEEIENIKTQIDEK 1265

Query: 403  LNQDAISWGIKYKQIDPLR-----FDTEESFADSLRQRAGFVKKIKDDYNLTTSHFNKTE 457
              ++        ++   L          E   D   +    +++ + +  + T    K  
Sbjct: 1266 NKKNEEIAKNNEEKQSELDEKLKELQDLEEIKDETEEINQQIEETQKE--IETKKQQKEN 1323

Query: 458  ENQLRTQLVKRPAS-ESVDLIRGAYNTLSDSDKEGVRSSFAH 498
             N+L  +L K     E ++ +      L++ + E V+S    
Sbjct: 1324 NNKLNEELDKLKQDLEQIENVEDNVEKLTE-EIEKVKSDIDS 1364


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.303    0.119    0.268 

Lambda     K      H
   0.267   0.0363    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,132,350,496
Number of Sequences: 14124377
Number of extensions: 325527043
Number of successful extensions: 870156
Number of sequences better than 10.0: 441
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 590
Number of HSP's that attempted gapping in prelim test: 869781
Number of HSP's gapped (non-prelim): 851
length of query: 707
length of database: 4,842,793,630
effective HSP length: 147
effective length of query: 560
effective length of database: 2,766,510,211
effective search space: 1549245718160
effective search space used: 1549245718160
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.4 bits)
S2: 85 (37.5 bits)