RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254781204|ref|YP_003065617.1| hypothetical protein
CLIBASIA_05555 [Candidatus Liberibacter asiaticus str. psy62]
(707 letters)
>gnl|CDD|37291 KOG2080, KOG2080, KOG2080, Uncharacterized conserved protein,
contains DENN and RUN domains [Signal transduction
mechanisms].
Length = 1295
Score = 31.2 bits (70), Expect = 0.91
Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 1/99 (1%)
Query: 374 NPSLSLASTMMATKYKEILEKSHRQSMQELNQDAISWGIKYKQIDPLRFDTEESFADSLR 433
+PSL +T + K I +K+ R ++++ +A+ GI + I +T + L
Sbjct: 761 SPSLIAQATFVEELLKNIEKKTKRMLLEKMGTEAVRLGITHPSIARAEENTLIASGCDLL 820
Query: 434 QRA-GFVKKIKDDYNLTTSHFNKTEENQLRTQLVKRPAS 471
++ +IK + H N V+
Sbjct: 821 EKIWSHGLQIKQGKSALWGHLQTYVSNLGGYASVEGSPR 859
>gnl|CDD|31397 COG1204, COG1204, Superfamily II helicase [General function
prediction only].
Length = 766
Score = 31.1 bits (70), Expect = 0.98
Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 5/72 (6%)
Query: 640 KDTGEYDPY-TIKYMNVGSGKYMIIKNGNPKVDKEGKTIIINVEDVNRDERMESTIRH-- 696
KDT YDP I + V M + G P D G+ II+ + E I+
Sbjct: 364 KDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILATSHDELEYLAELYIQSEP 423
Query: 697 --YEHQIFNEHA 706
E ++ +E
Sbjct: 424 EPIESKLGDELN 435
>gnl|CDD|33628 COG3836, HpcH, 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase
[Carbohydrate transport and metabolism].
Length = 255
Score = 31.4 bits (71), Expect = 1.0
Identities = 37/127 (29%), Positives = 51/127 (40%), Gaps = 26/127 (20%)
Query: 9 PLVEAVTPNQDAVRDSVNPQAGLRDLGDALGKATQFLEGIRRDNAFATANTRYTELSFKA 68
P+V+ + AV + P G R +G AL +A++F R + A AN L
Sbjct: 96 PMVDTAEQARQAVAATRYPPLGERGVGSALARASRF---GRIADYLAQANDEICLL---- 148
Query: 69 VQDFHDFTNSLDTRDSLQAGDKIK--EYVDGRIRSAYD-----RFLSSISHRDVRKKFQA 121
VQ ++TR L D I E VDG D L + H +V QA
Sbjct: 149 VQ--------IETRAGLDNLDAIAAVEGVDGVFIGPADLAASLGHLGNPGHPEV----QA 196
Query: 122 QVEHDIR 128
+EH I
Sbjct: 197 AIEHIIA 203
>gnl|CDD|143432 cd07114, ALDH_DhaS, Uncharacterized Candidatus pelagibacter
aldehyde dehydrogenase, DhaS-like. Uncharacterized
aldehyde dehydrogenase from Candidatus pelagibacter
(DhaS) and other related sequences are present in this
CD.
Length = 457
Score = 31.0 bits (71), Expect = 1.1
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 24/70 (34%)
Query: 254 EDVSKAIGLA-------GWDRLDDTKRRRLL--------EH------LSSRDNALNTKLR 292
DV +A+ A W +L T+R +LL + L +RDN KL
Sbjct: 19 ADVDRAVAAARAAFEGGAWRKLTPTERGKLLRRLADLIEANAEELAELETRDNG---KLI 75
Query: 293 KETQAQARRI 302
+ET+AQ R +
Sbjct: 76 RETRAQVRYL 85
>gnl|CDD|145172 pfam01866, Diphthamide_syn, Putative diphthamide synthesis protein.
Human DPHL2 is a candidate tumour suppressor gene. DPH2
from yeast, which confers resistance to diphtheria toxin
has been found to be involved in diphthamide synthesis.
Diphtheria toxin inhibits eukaryotic protein synthesis
by ADP-ribosylating diphthamide, a posttranslationally
modified histidine residue present in EF2. The exact
function of the members of this family is unknown.
Length = 300
Score = 29.1 bits (66), Expect = 3.8
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 407 AISWGIKYKQIDPLRFDTEESFADS-LRQRAGFVKKIKD 444
A++ G + DP + EE AD LR+R ++K +D
Sbjct: 164 ALATGKPVYRYDPYSGEVEEYDADKMLRRRYAAIEKARD 202
>gnl|CDD|145835 pfam02887, PK_C, Pyruvate kinase, alpha/beta domain. As well as
being found in pyruvate kinase this family is found as
an isolated domain in some bacterial proteins.
Length = 117
Score = 29.0 bits (66), Expect = 4.8
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 403 LNQDAISWGIKYKQIDPLRFDTEESFADSLR--QRAGFVKK 441
+ A+ WG+ D T+E A++LR + AG +KK
Sbjct: 52 ARRLALYWGVHPVLGDERSISTDEIIAEALRVAKDAGLIKK 92
>gnl|CDD|37711 KOG2500, KOG2500, KOG2500, Uncharacterized conserved protein
[Function unknown].
Length = 253
Score = 28.8 bits (64), Expect = 5.2
Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Query: 668 PKVD---KEGKTIIINVEDVNRDERMESTIR 695
P +D KEG+TI IN++++ + + S R
Sbjct: 146 PSLDLGFKEGETIKINIKNITKKKGAASWPR 176
>gnl|CDD|109451 pfam00393, 6PGD, 6-phosphogluconate dehydrogenase, C-terminal
domain. This family represents the C-terminal all-alpha
domain of 6-phosphogluconate dehydrogenase. The domain
contains two structural repeats of 5 helices each.
Length = 290
Score = 28.7 bits (65), Expect = 5.7
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 362 KFLQKIDDEYISNPSLSLASTMMATKYKEILEKSHRQSMQELNQDAISWGI 412
+FL KI D Y NP L + ++ +K+ +++ QS + + A+ GI
Sbjct: 192 QFLDKIKDAYEKNP--DLPNLLLDPYFKKEIKEYQ-QSWRRVVAIAVEAGI 239
>gnl|CDD|30711 COG0362, Gnd, 6-phosphogluconate dehydrogenase [Carbohydrate
transport and metabolism].
Length = 473
Score = 28.6 bits (64), Expect = 6.0
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 10/74 (13%)
Query: 362 KFLQKIDDEYISNPSLSLASTMMATKYKEILEKSHRQSMQELNQDAISWGIKYKQIDPL- 420
KFL KI D + NP LA+ ++A +K ILE+ QS++ + A+ GI P+
Sbjct: 370 KFLDKITDAFDENP--ELANLLLAPYFKSILEEYQ-QSLRRVVAYAVEAGI------PVP 420
Query: 421 RFDTEESFADSLRQ 434
F + S+ DS R
Sbjct: 421 AFSSALSYYDSYRT 434
>gnl|CDD|133279 cd01878, HflX, HflX subfamily. A distinct conserved domain with a
glycine-rich segment N-terminal of the GTPase domain
characterizes the HflX subfamily. The E. coli HflX has
been implicated in the control of the lambda cII
repressor proteolysis, but the actual biological
functions of these GTPases remain unclear. HflX is
widespread, but not universally represented in all three
superkingdoms.
Length = 204
Score = 28.6 bits (65), Expect = 6.5
Identities = 16/49 (32%), Positives = 19/49 (38%), Gaps = 9/49 (18%)
Query: 240 DVSDSARERSLEVVEDVSKAIGLAG---------WDRLDDTKRRRLLEH 279
D SD E +E VE V K +G D LDD + LE
Sbjct: 129 DASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELEERLEA 177
>gnl|CDD|38017 KOG2806, KOG2806, KOG2806, Chitinase [Carbohydrate transport and
metabolism].
Length = 432
Score = 27.8 bits (61), Expect = 9.8
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 97 GRIRSAYDRFLSSISHRDVRKKFQAQVEHDIRDYHTKGVDI 137
G F +S R +R KF V I+DY GVD+
Sbjct: 129 GGSHGNSGLFSLVLSDRMIRAKFIESVVSFIKDYGFDGVDL 169
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.314 0.130 0.361
Gapped
Lambda K H
0.267 0.0649 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 7,977,608
Number of extensions: 413230
Number of successful extensions: 822
Number of sequences better than 10.0: 1
Number of HSP's gapped: 821
Number of HSP's successfully gapped: 24
Length of query: 707
Length of database: 6,263,737
Length adjustment: 101
Effective length of query: 606
Effective length of database: 4,081,228
Effective search space: 2473224168
Effective search space used: 2473224168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (27.4 bits)