RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254781204|ref|YP_003065617.1| hypothetical protein
CLIBASIA_05555 [Candidatus Liberibacter asiaticus str. psy62]
         (707 letters)



>1x46_A Globin chain, hemoglobin component VII; diptera, midge
           larva, oxygen storage/transport complex; HET: HEM; 1.50A
           {Tokunagayusurika akamusi} (A:)
          Length = 150

 Score = 29.7 bits (66), Expect = 1.1
 Identities = 7/27 (25%), Positives = 12/27 (44%)

Query: 484 LSDSDKEGVRSSFAHIEDNGLSAVVRL 510
           +   D   V+SS+A I D  +  +   
Sbjct: 7   MEAGDIALVKSSWAQIHDKEVDILYNF 33


>1eca_A Erythrocruorin (AQUO Met); oxygen transport; HET: HEM; 1.40A
           {Chironomus thummi thummi} (A:)
          Length = 136

 Score = 29.6 bits (66), Expect = 1.3
 Identities = 5/27 (18%), Positives = 13/27 (48%)

Query: 484 LSDSDKEGVRSSFAHIEDNGLSAVVRL 510
           LS      V++SF  ++ + +  +  +
Sbjct: 1   LSADQISTVQASFDKVKGDPVGILYAV 27


>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET:
           MAL ABD; 1.70A {Geobacillus stearothermophilus}
           (A:580-686)
          Length = 107

 Score = 28.8 bits (64), Expect = 2.2
 Identities = 10/85 (11%), Positives = 23/85 (27%), Gaps = 4/85 (4%)

Query: 607 VLGNTPV----NINESMLMPPRGMSKTDFEDRLWYATKDTGEYDPYTIKYMNVGSGKYMI 662
           + GN P     + + S  +              W+             K+    +   + 
Sbjct: 23  LTGNIPELGNWSTDTSGAVNNAQGPLLAPNYPDWFYVFSVPAGKTIQFKFFIKRADGTIQ 82

Query: 663 IKNGNPKVDKEGKTIIINVEDVNRD 687
            +NG+  V         N+    ++
Sbjct: 83  WENGSNHVATTPTGATGNITVTWQN 107


>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase,
           cytoplasm, RNA-binding, RNA binding, mitochondrion, rRNA
           processing; 3.00A {Saccharomyces cerevisiae} (J:1-219)
          Length = 219

 Score = 28.3 bits (63), Expect = 3.6
 Identities = 14/84 (16%), Positives = 25/84 (29%)

Query: 36  DALGKATQFLEGIRRDNAFATANTRYTELSFKAVQDFHDFTNSLDTRDSLQAGDKIKEYV 95
           DA  +  +F+         A     Y  L    V    D   + +    +     + + V
Sbjct: 38  DAQNELPKFILSDSPLELSAPIGKHYVVLDTNVVLQAIDLLENPNCFFDVIVPQIVLDEV 97

Query: 96  DGRIRSAYDRFLSSISHRDVRKKF 119
             +    Y R  +     D  K+F
Sbjct: 98  RNKSYPVYTRLRTLCRDSDDHKRF 121


>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase,
           phosphoprotein, nitrogen fixation, PER-ARNT-SIM,
           metal-binding, PAS, iron; HET: HEM; 1.5A {Bradyrhizobium
           japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A*
           1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A*
           1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A* (A:)
          Length = 119

 Score = 27.9 bits (61), Expect = 4.1
 Identities = 12/104 (11%), Positives = 28/104 (26%), Gaps = 6/104 (5%)

Query: 598 VRVSDAMQIVLGNTP-----VNINESMLMPPRGMSKTDFEDRLWYATKDTGEYDPYTIKY 652
              S A + + G +       N+N  M  P R    +        +              
Sbjct: 16  QLFSTAAERLFGWSELEAIGQNVNILMPEPDRSRHDSYISRYRTTSDPHIIGIGRIVTGK 75

Query: 653 MNVGSGKYMIIKNGNPKVDKEGKTIIINVEDVNRDERMESTIRH 696
              G+   M + +               V D+   ++ ++ ++ 
Sbjct: 76  RRDGTTFPMHL-SIGEMQSGGEPYFTGFVRDLTEHQQTQARLQE 118


>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP;
           2.20A {Escherichia coli} (A:1-121,A:185-308)
          Length = 245

 Score = 27.9 bits (62), Expect = 4.1
 Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 4/70 (5%)

Query: 45  LEGIRRDNAFATANTRYTELSFKAVQDFHDFTNSLDTRDSLQAGDKIKEYVDGRIRSAYD 104
           LEG+   N   +      +     V DF DF+  +D  + L     I  ++  R  +  D
Sbjct: 127 LEGL---NVLQSGMDYPHDPHHVFVSDFVDFSIYVDAPEDLLQTWYINRFLKFREGAFTD 183

Query: 105 RFLSSISHRD 114
              S   +  
Sbjct: 184 P-DSYFHNYA 192


>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc
           binding protein, ABC transporter; 1.80A {Treponema
           pallidum} (A:1-195)
          Length = 195

 Score = 27.9 bits (61), Expect = 4.7
 Identities = 16/130 (12%), Positives = 34/130 (26%), Gaps = 6/130 (4%)

Query: 66  FKAVQDFHDFTNSLDTRDSLQAGDKIKEYVDGRIRSAYDRFLSSISHRDVRKKFQAQVEH 125
                D H +T +    + L   D I  Y    + +      S +    +       +  
Sbjct: 66  MGPGVDPHLYTATAGDVEWLGNADLIL-YNGLHLETKMGEVFSKLRGSRLVVAVSETIPV 124

Query: 126 DIRDYHTKGVDIQIGATQRAQEDNLNMTVGLAAAHVLHDPSNENYFQ-RVQSITDHINSL 184
             R    +             +        +  +     P     F  R Q+    ++ L
Sbjct: 125 SQRLSLEE--AEFDPHVWFDVKLWSYSVKAVYESLCKLLPGKTREFTQRYQAYQQQLDKL 182

Query: 185 PIDLRLKQKL 194
             D  +++K 
Sbjct: 183 --DAYVRRKA 190


>1cbg_A Cyanogenic beta-glucosidase; 2.15A {Trifolium repens}
           (A:1-32,A:87-463)
          Length = 409

 Score = 27.7 bits (60), Expect = 4.8
 Identities = 11/108 (10%), Positives = 26/108 (24%), Gaps = 3/108 (2%)

Query: 592 NYTLNRVRVSDAMQIVLGNTPVNINESMLMPPRGMSKTDFEDRLWYATKDTGEYDPYTIK 651
            Y+      +  +         +   +      G          W      G        
Sbjct: 271 YYSSYYAAKAPRIPNARPAIQTDSLINATFEHNGKPLGPMAASSWLCIYPQGIRKLLLYV 330

Query: 652 YMNVGSGKYMIIKNGNPKVDKEGKTIIINVEDVNRDERMESTIRHYEH 699
             +  +    I +NG  + +      +   E +    R++   RH  +
Sbjct: 331 KNHYNNPVIYITENGRNEFNDP---TLSLQESLLDTPRIDYYYRHLYY 375


>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel
           beta sheet, helix- flanked five-stranded parallel beta
           sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A
           {Ralstonia eutropha} (A:1-150)
          Length = 150

 Score = 27.4 bits (60), Expect = 7.0
 Identities = 9/53 (16%), Positives = 17/53 (32%), Gaps = 5/53 (9%)

Query: 484 LSDSDKEGVRSSFA----HIEDNGLSAVVRLSSEFSDDAKNAAMVILSGMKHQ 532
           L+   K+ V+++      H  D       R+      + KN   +       Q
Sbjct: 2   LTQKTKDIVKATAPVLAEHGYDIIKCFYQRMFEAH-PELKNVFNMAHQEQGQQ 53


>2ra2_A Putative lipoprotein; X-RAY, NESG, STR88A, Q7CPV8,
           structural genomics, PSI-2, protein structure
           initiative; 1.90A {Salmonella typhimurium LT2} (A:)
          Length = 64

 Score = 27.0 bits (60), Expect = 7.1
 Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 10/50 (20%)

Query: 661 MIIKNGNPKVDKE----------GKTIIINVEDVNRDERMESTIRHYEHQ 700
            I+ +G P+ D +          G    IN  DV     +E+   H+ H 
Sbjct: 15  SIVTDGKPQTDNDTGXISYKDANGNKQQINRTDVKEXVALENLEHHHHHH 64


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.314    0.130    0.361 

Gapped
Lambda     K      H
   0.267   0.0470    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 4,994,164
Number of extensions: 225451
Number of successful extensions: 592
Number of sequences better than 10.0: 1
Number of HSP's gapped: 590
Number of HSP's successfully gapped: 18
Length of query: 707
Length of database: 4,956,049
Length adjustment: 95
Effective length of query: 612
Effective length of database: 1,744,574
Effective search space: 1067679288
Effective search space used: 1067679288
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.8 bits)