RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254781204|ref|YP_003065617.1| hypothetical protein CLIBASIA_05555 [Candidatus Liberibacter asiaticus str. psy62] (707 letters) >1x46_A Globin chain, hemoglobin component VII; diptera, midge larva, oxygen storage/transport complex; HET: HEM; 1.50A {Tokunagayusurika akamusi} (A:) Length = 150 Score = 29.7 bits (66), Expect = 1.1 Identities = 7/27 (25%), Positives = 12/27 (44%) Query: 484 LSDSDKEGVRSSFAHIEDNGLSAVVRL 510 + D V+SS+A I D + + Sbjct: 7 MEAGDIALVKSSWAQIHDKEVDILYNF 33 >1eca_A Erythrocruorin (AQUO Met); oxygen transport; HET: HEM; 1.40A {Chironomus thummi thummi} (A:) Length = 136 Score = 29.6 bits (66), Expect = 1.3 Identities = 5/27 (18%), Positives = 13/27 (48%) Query: 484 LSDSDKEGVRSSFAHIEDNGLSAVVRL 510 LS V++SF ++ + + + + Sbjct: 1 LSADQISTVQASFDKVKGDPVGILYAV 27 >1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} (A:580-686) Length = 107 Score = 28.8 bits (64), Expect = 2.2 Identities = 10/85 (11%), Positives = 23/85 (27%), Gaps = 4/85 (4%) Query: 607 VLGNTPV----NINESMLMPPRGMSKTDFEDRLWYATKDTGEYDPYTIKYMNVGSGKYMI 662 + GN P + + S + W+ K+ + + Sbjct: 23 LTGNIPELGNWSTDTSGAVNNAQGPLLAPNYPDWFYVFSVPAGKTIQFKFFIKRADGTIQ 82 Query: 663 IKNGNPKVDKEGKTIIINVEDVNRD 687 +NG+ V N+ ++ Sbjct: 83 WENGSNHVATTPTGATGNITVTWQN 107 >2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, cytoplasm, RNA-binding, RNA binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae} (J:1-219) Length = 219 Score = 28.3 bits (63), Expect = 3.6 Identities = 14/84 (16%), Positives = 25/84 (29%) Query: 36 DALGKATQFLEGIRRDNAFATANTRYTELSFKAVQDFHDFTNSLDTRDSLQAGDKIKEYV 95 DA + +F+ A Y L V D + + + + + V Sbjct: 38 DAQNELPKFILSDSPLELSAPIGKHYVVLDTNVVLQAIDLLENPNCFFDVIVPQIVLDEV 97 Query: 96 DGRIRSAYDRFLSSISHRDVRKKF 119 + Y R + D K+F Sbjct: 98 RNKSYPVYTRLRTLCRDSDDHKRF 121 >2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen fixation, PER-ARNT-SIM, metal-binding, PAS, iron; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A* (A:) Length = 119 Score = 27.9 bits (61), Expect = 4.1 Identities = 12/104 (11%), Positives = 28/104 (26%), Gaps = 6/104 (5%) Query: 598 VRVSDAMQIVLGNTP-----VNINESMLMPPRGMSKTDFEDRLWYATKDTGEYDPYTIKY 652 S A + + G + N+N M P R + + Sbjct: 16 QLFSTAAERLFGWSELEAIGQNVNILMPEPDRSRHDSYISRYRTTSDPHIIGIGRIVTGK 75 Query: 653 MNVGSGKYMIIKNGNPKVDKEGKTIIINVEDVNRDERMESTIRH 696 G+ M + + V D+ ++ ++ ++ Sbjct: 76 RRDGTTFPMHL-SIGEMQSGGEPYFTGFVRDLTEHQQTQARLQE 118 >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} (A:1-121,A:185-308) Length = 245 Score = 27.9 bits (62), Expect = 4.1 Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 4/70 (5%) Query: 45 LEGIRRDNAFATANTRYTELSFKAVQDFHDFTNSLDTRDSLQAGDKIKEYVDGRIRSAYD 104 LEG+ N + + V DF DF+ +D + L I ++ R + D Sbjct: 127 LEGL---NVLQSGMDYPHDPHHVFVSDFVDFSIYVDAPEDLLQTWYINRFLKFREGAFTD 183 Query: 105 RFLSSISHRD 114 S + Sbjct: 184 P-DSYFHNYA 192 >1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC transporter; 1.80A {Treponema pallidum} (A:1-195) Length = 195 Score = 27.9 bits (61), Expect = 4.7 Identities = 16/130 (12%), Positives = 34/130 (26%), Gaps = 6/130 (4%) Query: 66 FKAVQDFHDFTNSLDTRDSLQAGDKIKEYVDGRIRSAYDRFLSSISHRDVRKKFQAQVEH 125 D H +T + + L D I Y + + S + + + Sbjct: 66 MGPGVDPHLYTATAGDVEWLGNADLIL-YNGLHLETKMGEVFSKLRGSRLVVAVSETIPV 124 Query: 126 DIRDYHTKGVDIQIGATQRAQEDNLNMTVGLAAAHVLHDPSNENYFQ-RVQSITDHINSL 184 R + + + + P F R Q+ ++ L Sbjct: 125 SQRLSLEE--AEFDPHVWFDVKLWSYSVKAVYESLCKLLPGKTREFTQRYQAYQQQLDKL 182 Query: 185 PIDLRLKQKL 194 D +++K Sbjct: 183 --DAYVRRKA 190 >1cbg_A Cyanogenic beta-glucosidase; 2.15A {Trifolium repens} (A:1-32,A:87-463) Length = 409 Score = 27.7 bits (60), Expect = 4.8 Identities = 11/108 (10%), Positives = 26/108 (24%), Gaps = 3/108 (2%) Query: 592 NYTLNRVRVSDAMQIVLGNTPVNINESMLMPPRGMSKTDFEDRLWYATKDTGEYDPYTIK 651 Y+ + + + + G W G Sbjct: 271 YYSSYYAAKAPRIPNARPAIQTDSLINATFEHNGKPLGPMAASSWLCIYPQGIRKLLLYV 330 Query: 652 YMNVGSGKYMIIKNGNPKVDKEGKTIIINVEDVNRDERMESTIRHYEH 699 + + I +NG + + + E + R++ RH + Sbjct: 331 KNHYNNPVIYITENGRNEFNDP---TLSLQESLLDTPRIDYYYRHLYY 375 >1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix- flanked five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Ralstonia eutropha} (A:1-150) Length = 150 Score = 27.4 bits (60), Expect = 7.0 Identities = 9/53 (16%), Positives = 17/53 (32%), Gaps = 5/53 (9%) Query: 484 LSDSDKEGVRSSFA----HIEDNGLSAVVRLSSEFSDDAKNAAMVILSGMKHQ 532 L+ K+ V+++ H D R+ + KN + Q Sbjct: 2 LTQKTKDIVKATAPVLAEHGYDIIKCFYQRMFEAH-PELKNVFNMAHQEQGQQ 53 >2ra2_A Putative lipoprotein; X-RAY, NESG, STR88A, Q7CPV8, structural genomics, PSI-2, protein structure initiative; 1.90A {Salmonella typhimurium LT2} (A:) Length = 64 Score = 27.0 bits (60), Expect = 7.1 Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 10/50 (20%) Query: 661 MIIKNGNPKVDKE----------GKTIIINVEDVNRDERMESTIRHYEHQ 700 I+ +G P+ D + G IN DV +E+ H+ H Sbjct: 15 SIVTDGKPQTDNDTGXISYKDANGNKQQINRTDVKEXVALENLEHHHHHH 64 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.314 0.130 0.361 Gapped Lambda K H 0.267 0.0470 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 4,994,164 Number of extensions: 225451 Number of successful extensions: 592 Number of sequences better than 10.0: 1 Number of HSP's gapped: 590 Number of HSP's successfully gapped: 18 Length of query: 707 Length of database: 4,956,049 Length adjustment: 95 Effective length of query: 612 Effective length of database: 1,744,574 Effective search space: 1067679288 Effective search space used: 1067679288 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 58 (26.8 bits)