RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254781204|ref|YP_003065617.1| hypothetical protein CLIBASIA_05555 [Candidatus Liberibacter asiaticus str. psy62] (707 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 87.3 bits (216), Expect = 1e-17 Identities = 103/625 (16%), Positives = 185/625 (29%), Gaps = 255/625 (40%) Query: 21 VRDSVNPQA-GLRD--LGDALGKA-TQFLEG--I-----------------RRD------ 51 V V P G D L L + +LEG I ++ Sbjct: 68 VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYI 127 Query: 52 NAFATANTRYTELS----FKAVQDFHDFTNSLDTRDSLQA-----GDKIKEYVDGRIRSA 102 A A + + S F+AV + + L A G+ +Y + +R Sbjct: 128 TARIMAKRPFDKKSNSALFRAVGE-GNA--------QLVAIFGGQGN-TDDYFE-ELRDL 176 Query: 103 YD-------RFLSSISHRDVRKKFQ--AQVEHDIRDYHTKGVDIQ--------------- 138 Y + + + + D T+G++I Sbjct: 177 YQTYHVLVGDLIKFSA-----ETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL 231 Query: 139 ---------IGATQRAQEDNLNMTVGLAAAHVLH-DPSNENYFQ-RVQSITDHINSLPID 187 IG Q A V A +L P + ++ T H S Sbjct: 232 LSIPISCPLIGVIQLAH-----YVV---TAKLLGFTPGE---LRSYLKGATGH--S---- 274 Query: 188 LRLKQKLLSEAKEKLNTNQIIGAHARDPRVF-ENFMRA----FY--KKGH---PPKDSTS 237 Q L++ I A F + +A F+ + + P TS Sbjct: 275 ----QGLVTAV--------AI-AETDSWESFFVSVRKAITVLFFIGVRCYEAYPN---TS 318 Query: 238 LSDVSDSARERSLEVVEDV-SKAIGLAGWDRLDDTKRRRLLEHLSSRDNALNTKLRKETQ 296 L S E SLE E V S + ++ L + ++ +++ N N+ L Sbjct: 319 L---PPSILEDSLENNEGVPSPMLSISN---L---TQEQVQDYV----NKTNSHLPAG-- 363 Query: 297 AQARRIDAQLNHG-----ITVKPSELIPLEDYTQAYGVEQGTELYNLQQFKSVAAPDVAR 351 ++++ L +G ++ P L YG+ L++ K+ + D +R Sbjct: 364 ---KQVEISLVNGAKNLVVSGPPQSL---------YGLNL-----TLRKAKAPSGLDQSR 406 Query: 352 IKLMSTFDAKK------FLQKIDDEYISNPSLSLASTMMATKYKEILEKSHRQSMQELNQ 405 I F +K FL +++P + L + ++L + Sbjct: 407 I----PFSERKLKFSNRFLP------VASP--------FHSHL---LVPASDLINKDLVK 445 Query: 406 DAISWGIKYKQIDPLRFDTEESFADSLRQRAGFVKKIKDDYNLTTSHFNKTEENQLRTQL 465 + +S+ K QI P+ +DT + LR +G +++ + Sbjct: 446 NNVSFNAKDIQI-PV-YDTFD--GSDLRVLSG---------SISER-------------I 479 Query: 466 VKRPASESVDLIRGAYN---TLSDSDKEGVRSSFAHIED---NGLSAVVRLSSEFSDDAK 519 V V T HI D G S + L+ + Sbjct: 480 VDCIIRLPVKWET-TTQFKAT--------------HILDFGPGGASGLGVLTH------R 518 Query: 520 N----AAMVILSG-MKHQKDTETRY 539 N VI++G + D + + Sbjct: 519 NKDGTGVRVIVAGTLDINPDDDYGF 543 Score = 54.2 bits (130), Expect = 1e-07 Identities = 47/298 (15%), Positives = 91/298 (30%), Gaps = 103/298 (34%) Query: 376 SLSLASTMM--ATKYKEILEKSHRQSMQELNQDAISWGIKYKQIDP-------LRF---- 422 L + + A++ +E K + + D +P +F Sbjct: 19 VLLVPTASFFIASQLQEQFNKILPEPTEGFAAD----------DEPTTPAELVGKFLGYV 68 Query: 423 -DTEE-----SFADSLRQRAGFVKKIKDDYNLTTS--H-FNKTEENQLRTQLVKRPASES 473 E F L + + ++ Y L + H + T LVK Sbjct: 69 SSLVEPSKVGQFDQVLNL---CLTEFENCY-LEGNDIHALAAKLLQENDTTLVKT----- 119 Query: 474 VDLIRGAYNTLSDSDKEGVRSSFAHIEDNGLSAVVRLSSEFSDDAKNAAMVILSGMKHQK 533 +LI+ + + F + SA+ R E +A+ + I G Q Sbjct: 120 KELIKNYITARIMAKR-----PFDKKSN---SALFRAVGE--GNAQ--LVAIFGG---QG 164 Query: 534 DTETRYNTDHKSNKFD---SLYDSYINTPLTKLEQ--STAGGNFNK----DKEAIKLYLL 584 +T+ Y F+ LY +Y L + + ++ +A K++ Sbjct: 165 NTDD-Y--------FEELRDLYQTY--HVL--VGDLIKFSAETLSELIRTTLDAEKVFTQ 211 Query: 585 G-----------SMKDSGNYTLNRVRVS----DAMQI--------VLGNTPVNINESM 619 G + D Y L+ + +S +Q+ +LG TP + + Sbjct: 212 GLNILEWLENPSNTPDKD-YLLS-IPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYL 267 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 40.4 bits (93), Expect = 0.001 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 9/28 (32%) Query: 361 KKFLQ---KI--DDEYISNPSLSLASTM 383 KK LQ K+ DD S P+L++ +TM Sbjct: 23 KK-LQASLKLYADD---SAPALAIKATM 46 Score = 32.7 bits (73), Expect = 0.27 Identities = 9/43 (20%), Positives = 21/43 (48%), Gaps = 13/43 (30%) Query: 488 DKEGVRSSFAHIEDNGLSAVVRLSSEFSDDAKNAAMVILSGMK 530 +K+ ++ L A ++L ++DD+ A+ I + M+ Sbjct: 18 EKQALKK---------LQASLKL---YADDSA-PALAIKATME 47 >3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis H37RV} PDB: 3fgp_A* 3dki_A* 3dwi_A* Length = 325 Score = 33.1 bits (74), Expect = 0.25 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 7/55 (12%) Query: 546 NKFDSLYDSYINTPLTKLEQSTAGGNFNKDKEAIKLYL-------LGSMKDSGNY 593 ++DSL + NTPL L++ + + +D ++L+ GS+KD Sbjct: 4 TRYDSLLQALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAV 58 >1x46_A Globin chain, hemoglobin component VII; diptera, midge larva, oxygen storage/transport complex; HET: HEM; 1.50A {Tokunagayusurika akamusi} Length = 150 Score = 30.5 bits (68), Expect = 1.2 Identities = 8/62 (12%), Positives = 17/62 (27%), Gaps = 5/62 (8%) Query: 483 TLSDSDKEGVRSSFAHIEDNGLSAVVRLSSEFSDDAKNAAMVILSGMKHQKDTETRYNTD 542 + D V+SS+A I D + + + + S + + Sbjct: 6 DMEAGDIALVKSSWAQIHDKEVDILYNFFKSYPA-----SQAKFSAFAGKDLESLKDTAP 60 Query: 543 HK 544 Sbjct: 61 FA 62 >1j36_A ANCE, angiotensin converting enzyme; hydrolase; HET: LPR; 2.40A {Drosophila melanogaster} SCOP: d.92.1.5 PDB: 1j37_A* 1j38_A Length = 607 Score = 29.7 bits (66), Expect = 2.6 Identities = 12/107 (11%), Positives = 34/107 (31%), Gaps = 7/107 (6%) Query: 359 DAKKFLQKIDDEYISNPSLSLASTMMATKYKEILEKSHRQSMQELNQDAISWGIKYKQID 418 AK++L+ ++ E + T A Y+ + + + E++ + + + Sbjct: 11 QAKEYLENLNKELA---KRTNVETEAAWAYRSAITDENEKKKNEISAELAKFMKEVASDT 67 Query: 419 PLRFDTEESFADSLRQRAGFVKKIKDDYNLTTSHFNKTEENQLRTQL 465 +F + +R K + + E + + Sbjct: 68 -TKFQWRS-YQSEDLKR--QFKALTKLGYAALPEDDYAELLDTLSAM 110 >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating 1; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} Length = 497 Score = 29.3 bits (65), Expect = 2.8 Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 3/66 (4%) Query: 347 PDVARIKLMSTFDAKKFLQKIDDEYISNPSLSLASTMMATKYKEILEKSHRQSMQELNQD 406 P +A + FL +I Y P L + + + + + K+ ++ Sbjct: 363 PAIALMWRGGCIIRSVFLGQITKAYREEP--DLENLLFNKFFADAVTKAQ-SGWRKSIAL 419 Query: 407 AISWGI 412 A ++GI Sbjct: 420 ATTYGI 425 >3f1f_N 50S ribosomal protein L13; RF2, ribosome, termination, tRNA; 3.00A {Thermus thermophilus} PDB: 1vsa_H 3d5d_N 3d5b_N 3f1h_N Length = 163 Score = 28.3 bits (63), Expect = 6.6 Identities = 19/96 (19%), Positives = 32/96 (33%), Gaps = 21/96 (21%) Query: 464 QLVKRPASESVDLIRGAYNTLSDSDKEGVRSSFAHIEDNGLSAVVRLSSEFSDDAKNAAM 523 + + R A++ L+RG + R + G VV NA Sbjct: 44 KTLGRLATKIATLLRGKH-----------RPDWTPNVAMGDFVVV----------VNADK 82 Query: 524 VILSGMKHQKDTETRYNTDHKSNKFDSLYDSYINTP 559 + ++G K ++ TRY+ K L P Sbjct: 83 IRVTGKKLEQKIYTRYSGYPGGLKKIPLEKMLATHP 118 >1xfi_A Unknown protein; structural genomics, protein structure initiative, CESG, AT2G17340, center for eukaryotic structural genomics; 1.70A {Arabidopsis thaliana} SCOP: e.50.1.1 PDB: 2q40_A Length = 367 Score = 27.9 bits (62), Expect = 8.5 Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 6/64 (9%) Query: 470 ASESVDLIRGAYNTLSDSDKEGVRSSFAHIEDNGLSAVV----RLSSEFSDDAKNAAMVI 525 +E +++ + + GV +S I ++G V R+S E + + +A +VI Sbjct: 259 CTELTEILSQLKD--ENGQLLGVDTSKLLIANSGNDLPVIDLSRVSQELAYLSSDADLVI 316 Query: 526 LSGM 529 + GM Sbjct: 317 VEGM 320 >1xq5_A Hemoglobin alpha-1 chain; FISH hemoglobin, rapid oxidation, structural genomics, protein structure initiative, PSI, CESG; HET: HEM; 1.90A {Perca flavescens} SCOP: a.1.1.2 PDB: 3bj1_A* 3bj2_A* 3bj3_A* 3bcq_A* Length = 143 Score = 27.8 bits (61), Expect = 10.0 Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 4/32 (12%) Query: 483 TLSDSDKEGVRSSFA----HIEDNGLSAVVRL 510 +LS DK+ V++ + E+ G A+ R+ Sbjct: 2 SLSSKDKDTVKALWGKIADKAEEIGSDALSRM 33 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.314 0.130 0.361 Gapped Lambda K H 0.267 0.0497 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 5,697,287 Number of extensions: 263547 Number of successful extensions: 651 Number of sequences better than 10.0: 1 Number of HSP's gapped: 646 Number of HSP's successfully gapped: 34 Length of query: 707 Length of database: 5,693,230 Length adjustment: 99 Effective length of query: 608 Effective length of database: 3,293,074 Effective search space: 2002188992 Effective search space used: 2002188992 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 60 (27.4 bits)