RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781204|ref|YP_003065617.1| hypothetical protein
CLIBASIA_05555 [Candidatus Liberibacter asiaticus str. psy62]
         (707 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 87.3 bits (216), Expect = 1e-17
 Identities = 103/625 (16%), Positives = 185/625 (29%), Gaps = 255/625 (40%)

Query: 21  VRDSVNPQA-GLRD--LGDALGKA-TQFLEG--I-----------------RRD------ 51
           V   V P   G  D  L   L +    +LEG  I                  ++      
Sbjct: 68  VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYI 127

Query: 52  NAFATANTRYTELS----FKAVQDFHDFTNSLDTRDSLQA-----GDKIKEYVDGRIRSA 102
            A   A   + + S    F+AV +  +          L A     G+   +Y +  +R  
Sbjct: 128 TARIMAKRPFDKKSNSALFRAVGE-GNA--------QLVAIFGGQGN-TDDYFE-ELRDL 176

Query: 103 YD-------RFLSSISHRDVRKKFQ--AQVEHDIRDYHTKGVDIQ--------------- 138
           Y          +   +     +      +   D     T+G++I                
Sbjct: 177 YQTYHVLVGDLIKFSA-----ETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL 231

Query: 139 ---------IGATQRAQEDNLNMTVGLAAAHVLH-DPSNENYFQ-RVQSITDHINSLPID 187
                    IG  Q A        V    A +L   P      +  ++  T H  S    
Sbjct: 232 LSIPISCPLIGVIQLAH-----YVV---TAKLLGFTPGE---LRSYLKGATGH--S---- 274

Query: 188 LRLKQKLLSEAKEKLNTNQIIGAHARDPRVF-ENFMRA----FY--KKGH---PPKDSTS 237
               Q L++           I A       F  +  +A    F+   + +   P    TS
Sbjct: 275 ----QGLVTAV--------AI-AETDSWESFFVSVRKAITVLFFIGVRCYEAYPN---TS 318

Query: 238 LSDVSDSARERSLEVVEDV-SKAIGLAGWDRLDDTKRRRLLEHLSSRDNALNTKLRKETQ 296
           L     S  E SLE  E V S  + ++    L    + ++ +++    N  N+ L     
Sbjct: 319 L---PPSILEDSLENNEGVPSPMLSISN---L---TQEQVQDYV----NKTNSHLPAG-- 363

Query: 297 AQARRIDAQLNHG-----ITVKPSELIPLEDYTQAYGVEQGTELYNLQQFKSVAAPDVAR 351
              ++++  L +G     ++  P  L         YG+        L++ K+ +  D +R
Sbjct: 364 ---KQVEISLVNGAKNLVVSGPPQSL---------YGLNL-----TLRKAKAPSGLDQSR 406

Query: 352 IKLMSTFDAKK------FLQKIDDEYISNPSLSLASTMMATKYKEILEKSHRQSMQELNQ 405
           I     F  +K      FL       +++P          +     L  +     ++L +
Sbjct: 407 I----PFSERKLKFSNRFLP------VASP--------FHSHL---LVPASDLINKDLVK 445

Query: 406 DAISWGIKYKQIDPLRFDTEESFADSLRQRAGFVKKIKDDYNLTTSHFNKTEENQLRTQL 465
           + +S+  K  QI P+ +DT +     LR  +G         +++               +
Sbjct: 446 NNVSFNAKDIQI-PV-YDTFD--GSDLRVLSG---------SISER-------------I 479

Query: 466 VKRPASESVDLIRGAYN---TLSDSDKEGVRSSFAHIED---NGLSAVVRLSSEFSDDAK 519
           V       V           T              HI D    G S +  L+       +
Sbjct: 480 VDCIIRLPVKWET-TTQFKAT--------------HILDFGPGGASGLGVLTH------R 518

Query: 520 N----AAMVILSG-MKHQKDTETRY 539
           N       VI++G +    D +  +
Sbjct: 519 NKDGTGVRVIVAGTLDINPDDDYGF 543



 Score = 54.2 bits (130), Expect = 1e-07
 Identities = 47/298 (15%), Positives = 91/298 (30%), Gaps = 103/298 (34%)

Query: 376 SLSLASTMM--ATKYKEILEKSHRQSMQELNQDAISWGIKYKQIDP-------LRF---- 422
            L + +     A++ +E   K   +  +    D           +P        +F    
Sbjct: 19  VLLVPTASFFIASQLQEQFNKILPEPTEGFAAD----------DEPTTPAELVGKFLGYV 68

Query: 423 -DTEE-----SFADSLRQRAGFVKKIKDDYNLTTS--H-FNKTEENQLRTQLVKRPASES 473
               E      F   L      + + ++ Y L  +  H        +  T LVK      
Sbjct: 69  SSLVEPSKVGQFDQVLNL---CLTEFENCY-LEGNDIHALAAKLLQENDTTLVKT----- 119

Query: 474 VDLIRGAYNTLSDSDKEGVRSSFAHIEDNGLSAVVRLSSEFSDDAKNAAMVILSGMKHQK 533
            +LI+        + +      F    +   SA+ R   E   +A+   + I  G   Q 
Sbjct: 120 KELIKNYITARIMAKR-----PFDKKSN---SALFRAVGE--GNAQ--LVAIFGG---QG 164

Query: 534 DTETRYNTDHKSNKFD---SLYDSYINTPLTKLEQ--STAGGNFNK----DKEAIKLYLL 584
           +T+  Y        F+    LY +Y    L  +      +    ++      +A K++  
Sbjct: 165 NTDD-Y--------FEELRDLYQTY--HVL--VGDLIKFSAETLSELIRTTLDAEKVFTQ 211

Query: 585 G-----------SMKDSGNYTLNRVRVS----DAMQI--------VLGNTPVNINESM 619
           G           +  D   Y L+ + +S      +Q+        +LG TP  +   +
Sbjct: 212 GLNILEWLENPSNTPDKD-YLLS-IPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYL 267


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 9/28 (32%)

Query: 361 KKFLQ---KI--DDEYISNPSLSLASTM 383
           KK LQ   K+  DD   S P+L++ +TM
Sbjct: 23  KK-LQASLKLYADD---SAPALAIKATM 46



 Score = 32.7 bits (73), Expect = 0.27
 Identities = 9/43 (20%), Positives = 21/43 (48%), Gaps = 13/43 (30%)

Query: 488 DKEGVRSSFAHIEDNGLSAVVRLSSEFSDDAKNAAMVILSGMK 530
           +K+ ++          L A ++L   ++DD+   A+ I + M+
Sbjct: 18  EKQALKK---------LQASLKL---YADDSA-PALAIKATME 47


>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp
           fold, amino-acid biosynthesis; HET: PLP; 1.53A
           {Mycobacterium tuberculosis H37RV} PDB: 3fgp_A* 3dki_A*
           3dwi_A*
          Length = 325

 Score = 33.1 bits (74), Expect = 0.25
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 7/55 (12%)

Query: 546 NKFDSLYDSYINTPLTKLEQSTAGGNFNKDKEAIKLYL-------LGSMKDSGNY 593
            ++DSL  +  NTPL  L++ +   +  +D   ++L+         GS+KD    
Sbjct: 4   TRYDSLLQALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAV 58


>1x46_A Globin chain, hemoglobin component VII; diptera, midge larva,
           oxygen storage/transport complex; HET: HEM; 1.50A
           {Tokunagayusurika akamusi}
          Length = 150

 Score = 30.5 bits (68), Expect = 1.2
 Identities = 8/62 (12%), Positives = 17/62 (27%), Gaps = 5/62 (8%)

Query: 483 TLSDSDKEGVRSSFAHIEDNGLSAVVRLSSEFSDDAKNAAMVILSGMKHQKDTETRYNTD 542
            +   D   V+SS+A I D  +  +      +       +    S    +     +    
Sbjct: 6   DMEAGDIALVKSSWAQIHDKEVDILYNFFKSYPA-----SQAKFSAFAGKDLESLKDTAP 60

Query: 543 HK 544
             
Sbjct: 61  FA 62


>1j36_A ANCE, angiotensin converting enzyme; hydrolase; HET: LPR; 2.40A
           {Drosophila melanogaster} SCOP: d.92.1.5 PDB: 1j37_A*
           1j38_A
          Length = 607

 Score = 29.7 bits (66), Expect = 2.6
 Identities = 12/107 (11%), Positives = 34/107 (31%), Gaps = 7/107 (6%)

Query: 359 DAKKFLQKIDDEYISNPSLSLASTMMATKYKEILEKSHRQSMQELNQDAISWGIKYKQID 418
            AK++L+ ++ E       +   T  A  Y+  +   + +   E++ +   +  +     
Sbjct: 11  QAKEYLENLNKELA---KRTNVETEAAWAYRSAITDENEKKKNEISAELAKFMKEVASDT 67

Query: 419 PLRFDTEESFADSLRQRAGFVKKIKDDYNLTTSHFNKTEENQLRTQL 465
             +F     +     +R    K +           +  E     + +
Sbjct: 68  -TKFQWRS-YQSEDLKR--QFKALTKLGYAALPEDDYAELLDTLSAM 110


>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating 1; rossmann fold,
           oxidoreductase; HET: FLC; 2.37A {Saccharomyces
           cerevisiae}
          Length = 497

 Score = 29.3 bits (65), Expect = 2.8
 Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 3/66 (4%)

Query: 347 PDVARIKLMSTFDAKKFLQKIDDEYISNPSLSLASTMMATKYKEILEKSHRQSMQELNQD 406
           P +A +          FL +I   Y   P   L + +    + + + K+     ++    
Sbjct: 363 PAIALMWRGGCIIRSVFLGQITKAYREEP--DLENLLFNKFFADAVTKAQ-SGWRKSIAL 419

Query: 407 AISWGI 412
           A ++GI
Sbjct: 420 ATTYGI 425


>3f1f_N 50S ribosomal protein L13; RF2, ribosome, termination, tRNA; 3.00A
           {Thermus thermophilus} PDB: 1vsa_H 3d5d_N 3d5b_N 3f1h_N
          Length = 163

 Score = 28.3 bits (63), Expect = 6.6
 Identities = 19/96 (19%), Positives = 32/96 (33%), Gaps = 21/96 (21%)

Query: 464 QLVKRPASESVDLIRGAYNTLSDSDKEGVRSSFAHIEDNGLSAVVRLSSEFSDDAKNAAM 523
           + + R A++   L+RG +           R  +      G   VV           NA  
Sbjct: 44  KTLGRLATKIATLLRGKH-----------RPDWTPNVAMGDFVVV----------VNADK 82

Query: 524 VILSGMKHQKDTETRYNTDHKSNKFDSLYDSYINTP 559
           + ++G K ++   TRY+      K   L       P
Sbjct: 83  IRVTGKKLEQKIYTRYSGYPGGLKKIPLEKMLATHP 118


>1xfi_A Unknown protein; structural genomics, protein structure initiative,
           CESG, AT2G17340, center for eukaryotic structural
           genomics; 1.70A {Arabidopsis thaliana} SCOP: e.50.1.1
           PDB: 2q40_A
          Length = 367

 Score = 27.9 bits (62), Expect = 8.5
 Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 6/64 (9%)

Query: 470 ASESVDLIRGAYNTLSDSDKEGVRSSFAHIEDNGLSAVV----RLSSEFSDDAKNAAMVI 525
            +E  +++    +   +    GV +S   I ++G    V    R+S E +  + +A +VI
Sbjct: 259 CTELTEILSQLKD--ENGQLLGVDTSKLLIANSGNDLPVIDLSRVSQELAYLSSDADLVI 316

Query: 526 LSGM 529
           + GM
Sbjct: 317 VEGM 320


>1xq5_A Hemoglobin alpha-1 chain; FISH hemoglobin, rapid oxidation,
           structural genomics, protein structure initiative, PSI,
           CESG; HET: HEM; 1.90A {Perca flavescens} SCOP: a.1.1.2
           PDB: 3bj1_A* 3bj2_A* 3bj3_A* 3bcq_A*
          Length = 143

 Score = 27.8 bits (61), Expect = 10.0
 Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 4/32 (12%)

Query: 483 TLSDSDKEGVRSSFA----HIEDNGLSAVVRL 510
           +LS  DK+ V++ +       E+ G  A+ R+
Sbjct: 2   SLSSKDKDTVKALWGKIADKAEEIGSDALSRM 33


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.314    0.130    0.361 

Gapped
Lambda     K      H
   0.267   0.0497    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 5,697,287
Number of extensions: 263547
Number of successful extensions: 651
Number of sequences better than 10.0: 1
Number of HSP's gapped: 646
Number of HSP's successfully gapped: 34
Length of query: 707
Length of database: 5,693,230
Length adjustment: 99
Effective length of query: 608
Effective length of database: 3,293,074
Effective search space: 2002188992
Effective search space used: 2002188992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.4 bits)