RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254781204|ref|YP_003065617.1| hypothetical protein
CLIBASIA_05555 [Candidatus Liberibacter asiaticus str. psy62]
(707 letters)
>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment
{Human (Homo sapiens) [TaxId: 9606]}
Length = 579
Score = 31.7 bits (71), Expect = 0.22
Identities = 46/379 (12%), Positives = 119/379 (31%), Gaps = 43/379 (11%)
Query: 216 RVFENFMRAFYKKGHPPKDSTSLSDVSDSARERSLEVVEDVSKAIGLAGWDRLDDTKRRR 275
++ + + +G ++D + ++ + ++S++ + L+ +
Sbjct: 144 KLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINK 203
Query: 276 LLEHLSSRDNALNTKLRKETQAQARRIDAQLNHGITVKPSELIPLEDYTQAYGVEQGTEL 335
LL L+ + + D + + P + + V ++
Sbjct: 204 LLTALNECTEWGQIFILDCLSNYNPKDDREAQSICE----RVTPRLSHANSAVVLSAVKV 259
Query: 336 YNLQQFKSVAAPDVARIKLMSTFDAKKFLQKIDDEYISNPSLSLASTMMATKYKEILEKS 395
L +F + D ++ A + + E ++ K EIL++
Sbjct: 260 --LMKFLELLPKDSDYYNMLLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQE 317
Query: 396 HRQSMQELNQDAISWGIKYKQIDPLRFDTEESFADSLRQRAGFVKKIKDDYNLTTSHFNK 455
+ + N +K +++D + ++ + + ++K+ F +
Sbjct: 318 IKVFFVKYNDP---IYVKLEKLDIMIRLASQANIAQV------LAELKEYATEVDVDFVR 368
Query: 456 TEENQLRTQLVKRPASES------VDLIRGAYNTLSDSDKEGVRSSFAHIEDNGLSAVVR 509
+ +K S +DLI+ N + +R F + S +
Sbjct: 369 KAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIAT 428
Query: 510 LSSEFSD----DAKNAAMVILSGMKHQKDTETRYNTDHKSNKFDSLYDSYIN-TPLTKLE 564
L DA+ A + I+ + D+ +S + + + + +L
Sbjct: 429 LCENLDSLDEPDARAAMIWIVGEYAER--------IDNADELLESFLEGFHDESTQVQLT 480
Query: 565 QSTAGGNFNKDKEAIKLYL 583
TA +KL+L
Sbjct: 481 LLTA---------IVKLFL 490
>d2ffja1 e.50.1.1 (A:7-288) Hypothetical protein AF1104
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 282
Score = 28.7 bits (64), Expect = 1.5
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 4/51 (7%)
Query: 483 TLSDSDKEGVRSSFAHIEDNGLSAVV----RLSSEFSDDAKNAAMVILSGM 529
T+ D+ V + NG A+ L E + A +++ GM
Sbjct: 190 TIEDARLARVDKIADELLTNGKGAIGIIMDELPDETRKALEEADLIVAKGM 240
>d1t3ca_ d.92.1.7 (A:) Botulinum neurotoxin {Clostridium botulinum,
serotype E [TaxId: 1491]}
Length = 411
Score = 28.6 bits (64), Expect = 1.9
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Query: 540 NTDHKSNKFDSLYDSY--INTPLTKLEQSTAGGNFNKDKEAIKLYLLGSMKDSGNYTLNR 597
+ ++ + +L Y I + L+K++ S N KD K L SG Y++N
Sbjct: 263 TSAQSNDIYTNLLADYKKIASKLSKVQVSNPLLNPYKDVFEAKYGL--DKDASGIYSVNI 320
Query: 598 VRVSDAMQIVLGNTPVNINE 617
+ +D + + T ++
Sbjct: 321 NKFNDIFKKLYSFTEFDLAT 340
>d1jv1a_ c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphorylase
{Human (Homo sapiens), AGX1 [TaxId: 9606]}
Length = 501
Score = 28.4 bits (63), Expect = 2.1
Identities = 8/54 (14%), Positives = 20/54 (37%)
Query: 262 LAGWDRLDDTKRRRLLEHLSSRDNALNTKLRKETQAQARRIDAQLNHGITVKPS 315
L W+ L++ ++ L L + + ++ + Q N ++P
Sbjct: 19 LRFWNELEEAQQVELYAELQAMNFEELNFFFQKAIEGFNQSSHQKNVDARMEPV 72
>d2f1la1 b.41.1.4 (A:101-175) 16S rRNA processing protein RimM,
C-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Length = 75
Score = 27.7 bits (62), Expect = 3.2
Identities = 5/44 (11%), Positives = 13/44 (29%), Gaps = 4/44 (9%)
Query: 641 DTGEYDPYTIKYMNVGSGK--YMI--IKNGNPKVDKEGKTIIIN 680
+TG D +K ++ +D + ++
Sbjct: 27 ETGANDVMVVKPCAGSLDDRERLLPYTGQCVLSIDLAAGEMRVD 70
>d1xfia_ e.50.1.1 (A:) Hypothetical protein At2g17340 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 360
Score = 27.5 bits (61), Expect = 3.3
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 486 DSDKEGVRSSFAHIEDNGLSAVV----RLSSEFSDDAKNAAMVILSGM 529
+ GV +S I ++G V R+S E + + +A +VI+ GM
Sbjct: 268 NGQLLGVDTSKLLIANSGNDLPVIDLSRVSQELAYLSSDADLVIVEGM 315
>d1xq5a_ a.1.1.2 (A:) Hemoglobin, alpha-chain {Yellow perch (Perca
flavescens) [TaxId: 8167]}
Length = 142
Score = 27.4 bits (60), Expect = 3.5
Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Query: 483 TLSDSDKEGVRSSFA----HIEDNGLSAVVRL 510
+LS DK+ V++ + E+ G A+ R+
Sbjct: 1 SLSSKDKDTVKALWGKIADKAEEIGSDALSRM 32
>d1spga_ a.1.1.2 (A:) Hemoglobin, alpha-chain {Fish (Leiostomus
xanthurus) [TaxId: 59837]}
Length = 143
Score = 27.4 bits (60), Expect = 3.9
Identities = 8/32 (25%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 483 TLSDSDKEGVRSSFA----HIEDNGLSAVVRL 510
+LS +DK V++ + + G A+ R+
Sbjct: 1 SLSATDKARVKALWDKIEGKSAELGAEALGRM 32
>d1itxa1 c.1.8.5 (A:33-337,A:410-451) Chitinase A1 {Bacillus
circulans [TaxId: 1397]}
Length = 347
Score = 27.1 bits (59), Expect = 4.3
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 104 DRFLSSISHRDVRKKFQAQVEHDIRDYHTKGVDI 137
+RF + R+ F +R Y+ GVD+
Sbjct: 136 NRFSDVAATAATREVFANSAVDFLRKYNFDGVDL 169
>d1a6ma_ a.1.1.2 (A:) Myoglobin {Sperm whale (Physeter catodon)
[TaxId: 9755]}
Length = 151
Score = 27.4 bits (60), Expect = 4.6
Identities = 7/31 (22%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 484 LSDSDKEGVRSSFA----HIEDNGLSAVVRL 510
LS+ + + V +A + +G ++RL
Sbjct: 2 LSEGEWQLVLHVWAKVEADVAGHGQDILIRL 32
>d3d1ka1 a.1.1.2 (A:1-142) Hemoglobin, alpha-chain {Antarctic fish
(Trematomus newnesi) [TaxId: 35730]}
Length = 142
Score = 27.0 bits (59), Expect = 4.7
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Query: 483 TLSDSDKEGVRSSFA----HIEDNGLSAVVRL 510
+LSD DK VR+ ++ + G A+ R+
Sbjct: 1 SLSDKDKAAVRALWSKIGKSSDAIGNDALSRM 32
>d1lhta_ a.1.1.2 (A:) Myoglobin {Loggerhead sea turtle (Caretta
caretta) [TaxId: 8467]}
Length = 153
Score = 27.0 bits (59), Expect = 4.9
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
Query: 484 LSDSDKEGVRSSFA----HIEDNGLSAVVRL 510
LSD + V +A + +G ++RL
Sbjct: 2 LSDDEWNHVLGIWAKVEPDLSAHGQEVIIRL 32
>d1cg5a_ a.1.1.2 (A:) Hemoglobin, alpha-chain {Cartilaginous fish
akaei (Dasyatis akajei) [TaxId: 31902]}
Length = 141
Score = 26.9 bits (59), Expect = 5.3
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 4/31 (12%)
Query: 484 LSDSDKEGVRSSFAHI----EDNGLSAVVRL 510
LS +K+ + I E G A+ RL
Sbjct: 2 LSSQNKKAIEELGNLIKANAEAWGADALARL 32
>d1outa_ a.1.1.2 (A:) Hemoglobin, alpha-chain {Trout (Oncorhynchus
mykiss) [TaxId: 8022]}
Length = 142
Score = 26.9 bits (59), Expect = 5.6
Identities = 7/32 (21%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 483 TLSDSDKEGVRSSFA----HIEDNGLSAVVRL 510
+L+ DK V++ + + G A+ R+
Sbjct: 1 SLTAKDKSVVKAFWGKISGKADVVGAEALGRM 32
>d1wmua_ a.1.1.2 (A:) Hemoglobin, alpha-chain {Aldabra giant
tortoise (Geochelone gigantea) [TaxId: 167804]}
Length = 141
Score = 26.6 bits (58), Expect = 7.5
Identities = 9/31 (29%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
Query: 484 LSDSDKEGVRSSFA----HIEDNGLSAVVRL 510
L++ DK+ ++ + H ED G A+ R+
Sbjct: 2 LTEDDKQLIQHVWEKVLEHQEDFGAEALERM 32
>d1wb0a1 c.1.8.5 (A:22-266,A:337-388) Chitotriosidase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 297
Score = 26.3 bits (57), Expect = 7.6
Identities = 8/42 (19%), Positives = 16/42 (38%)
Query: 97 GRIRSAYDRFLSSISHRDVRKKFQAQVEHDIRDYHTKGVDIQ 138
G +F ++ + R+ F +R Y G+D+
Sbjct: 76 GGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLD 117
>d1k75a_ c.82.1.2 (A:) L-histidinol dehydrogenase HisD {Escherichia
coli [TaxId: 562]}
Length = 431
Score = 26.6 bits (58), Expect = 7.8
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 12/62 (19%)
Query: 453 FNKTEENQLRTQLVKRPASESVDLIRGAYNTLSDSDKEGVRSSFAHIEDNGLSAVVRLSS 512
+N Q R QL+ RPA + S+S V +++ G A+ S+
Sbjct: 6 WNSCTAEQQR-QLLMRPAISA-----------SESITRTVNDILDNVKARGDEALREYSA 53
Query: 513 EF 514
+F
Sbjct: 54 KF 55
>d1ecda_ a.1.1.2 (A:) Erythrocruorin {Midge (Chironomus thummi
thummi), fraction III [TaxId: 7154]}
Length = 136
Score = 26.3 bits (57), Expect = 7.9
Identities = 5/27 (18%), Positives = 13/27 (48%)
Query: 484 LSDSDKEGVRSSFAHIEDNGLSAVVRL 510
LS V++SF ++ + + + +
Sbjct: 1 LSADQISTVQASFDKVKGDPVGILYAV 27
>d1urva_ a.1.1.2 (A:) Cytoglobin {Human (Homo sapiens) [TaxId:
9606]}
Length = 154
Score = 26.6 bits (58), Expect = 7.9
Identities = 9/31 (29%), Positives = 21/31 (67%), Gaps = 4/31 (12%)
Query: 484 LSDSDKEGVRSSFA----HIEDNGLSAVVRL 510
LS+++++ V++ +A + ED G++ +VR
Sbjct: 2 LSEAERKAVQAMWARLYANSEDVGVAILVRF 32
>d2lhba_ a.1.1.2 (A:) Lamprey globin {Sea lamprey (Petromyzon
marinus) [TaxId: 7757]}
Length = 149
Score = 26.2 bits (57), Expect = 8.3
Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Query: 478 RGAYNTLSDSDKEGVRSSFA----HIEDNGLSAVVRL 510
G+ LS ++K +RS++A E +G+ +V+
Sbjct: 5 TGSVAPLSAAEKTKIRSAWAPVYSTYETSGVDILVKF 41
>d1jeba_ a.1.1.2 (A:) Hemoglobin, alpha-chain {Human (Homo sapiens),
zeta isoform [TaxId: 9606]}
Length = 141
Score = 26.2 bits (57), Expect = 9.4
Identities = 6/32 (18%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 483 TLSDSDKEGVRSSFA----HIEDNGLSAVVRL 510
+L+ +++ + S +A + G + RL
Sbjct: 1 SLTKTERTIIVSMWAKISTQADTIGTETLERL 32
>d1ll7a1 c.1.8.5 (A:36-292,A:355-427) Chitinase 1 {Fungus
(Coccidioides immitis) [TaxId: 5501]}
Length = 330
Score = 25.9 bits (56), Expect = 9.7
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 111 SHRDVRKKFQAQVEHDIRDYHTKGVDIQ 138
S + RKKF ++D G+DI
Sbjct: 107 STEEGRKKFADTSLKLMKDLGFDGIDID 134
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.130 0.361
Gapped
Lambda K H
0.267 0.0522 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,455,603
Number of extensions: 113710
Number of successful extensions: 279
Number of sequences better than 10.0: 1
Number of HSP's gapped: 279
Number of HSP's successfully gapped: 30
Length of query: 707
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 615
Effective length of database: 1,144,436
Effective search space: 703828140
Effective search space used: 703828140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (25.8 bits)