BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781204|ref|YP_003065617.1| hypothetical protein
CLIBASIA_05555 [Candidatus Liberibacter asiaticus str. psy62]
         (707 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781204|ref|YP_003065617.1| hypothetical protein CLIBASIA_05555 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 707

 Score = 1462 bits (3786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 707/707 (100%), Positives = 707/707 (100%)

Query: 1   MIEITTNKPLVEAVTPNQDAVRDSVNPQAGLRDLGDALGKATQFLEGIRRDNAFATANTR 60
           MIEITTNKPLVEAVTPNQDAVRDSVNPQAGLRDLGDALGKATQFLEGIRRDNAFATANTR
Sbjct: 1   MIEITTNKPLVEAVTPNQDAVRDSVNPQAGLRDLGDALGKATQFLEGIRRDNAFATANTR 60

Query: 61  YTELSFKAVQDFHDFTNSLDTRDSLQAGDKIKEYVDGRIRSAYDRFLSSISHRDVRKKFQ 120
           YTELSFKAVQDFHDFTNSLDTRDSLQAGDKIKEYVDGRIRSAYDRFLSSISHRDVRKKFQ
Sbjct: 61  YTELSFKAVQDFHDFTNSLDTRDSLQAGDKIKEYVDGRIRSAYDRFLSSISHRDVRKKFQ 120

Query: 121 AQVEHDIRDYHTKGVDIQIGATQRAQEDNLNMTVGLAAAHVLHDPSNENYFQRVQSITDH 180
           AQVEHDIRDYHTKGVDIQIGATQRAQEDNLNMTVGLAAAHVLHDPSNENYFQRVQSITDH
Sbjct: 121 AQVEHDIRDYHTKGVDIQIGATQRAQEDNLNMTVGLAAAHVLHDPSNENYFQRVQSITDH 180

Query: 181 INSLPIDLRLKQKLLSEAKEKLNTNQIIGAHARDPRVFENFMRAFYKKGHPPKDSTSLSD 240
           INSLPIDLRLKQKLLSEAKEKLNTNQIIGAHARDPRVFENFMRAFYKKGHPPKDSTSLSD
Sbjct: 181 INSLPIDLRLKQKLLSEAKEKLNTNQIIGAHARDPRVFENFMRAFYKKGHPPKDSTSLSD 240

Query: 241 VSDSARERSLEVVEDVSKAIGLAGWDRLDDTKRRRLLEHLSSRDNALNTKLRKETQAQAR 300
           VSDSARERSLEVVEDVSKAIGLAGWDRLDDTKRRRLLEHLSSRDNALNTKLRKETQAQAR
Sbjct: 241 VSDSARERSLEVVEDVSKAIGLAGWDRLDDTKRRRLLEHLSSRDNALNTKLRKETQAQAR 300

Query: 301 RIDAQLNHGITVKPSELIPLEDYTQAYGVEQGTELYNLQQFKSVAAPDVARIKLMSTFDA 360
           RIDAQLNHGITVKPSELIPLEDYTQAYGVEQGTELYNLQQFKSVAAPDVARIKLMSTFDA
Sbjct: 301 RIDAQLNHGITVKPSELIPLEDYTQAYGVEQGTELYNLQQFKSVAAPDVARIKLMSTFDA 360

Query: 361 KKFLQKIDDEYISNPSLSLASTMMATKYKEILEKSHRQSMQELNQDAISWGIKYKQIDPL 420
           KKFLQKIDDEYISNPSLSLASTMMATKYKEILEKSHRQSMQELNQDAISWGIKYKQIDPL
Sbjct: 361 KKFLQKIDDEYISNPSLSLASTMMATKYKEILEKSHRQSMQELNQDAISWGIKYKQIDPL 420

Query: 421 RFDTEESFADSLRQRAGFVKKIKDDYNLTTSHFNKTEENQLRTQLVKRPASESVDLIRGA 480
           RFDTEESFADSLRQRAGFVKKIKDDYNLTTSHFNKTEENQLRTQLVKRPASESVDLIRGA
Sbjct: 421 RFDTEESFADSLRQRAGFVKKIKDDYNLTTSHFNKTEENQLRTQLVKRPASESVDLIRGA 480

Query: 481 YNTLSDSDKEGVRSSFAHIEDNGLSAVVRLSSEFSDDAKNAAMVILSGMKHQKDTETRYN 540
           YNTLSDSDKEGVRSSFAHIEDNGLSAVVRLSSEFSDDAKNAAMVILSGMKHQKDTETRYN
Sbjct: 481 YNTLSDSDKEGVRSSFAHIEDNGLSAVVRLSSEFSDDAKNAAMVILSGMKHQKDTETRYN 540

Query: 541 TDHKSNKFDSLYDSYINTPLTKLEQSTAGGNFNKDKEAIKLYLLGSMKDSGNYTLNRVRV 600
           TDHKSNKFDSLYDSYINTPLTKLEQSTAGGNFNKDKEAIKLYLLGSMKDSGNYTLNRVRV
Sbjct: 541 TDHKSNKFDSLYDSYINTPLTKLEQSTAGGNFNKDKEAIKLYLLGSMKDSGNYTLNRVRV 600

Query: 601 SDAMQIVLGNTPVNINESMLMPPRGMSKTDFEDRLWYATKDTGEYDPYTIKYMNVGSGKY 660
           SDAMQIVLGNTPVNINESMLMPPRGMSKTDFEDRLWYATKDTGEYDPYTIKYMNVGSGKY
Sbjct: 601 SDAMQIVLGNTPVNINESMLMPPRGMSKTDFEDRLWYATKDTGEYDPYTIKYMNVGSGKY 660

Query: 661 MIIKNGNPKVDKEGKTIIINVEDVNRDERMESTIRHYEHQIFNEHAP 707
           MIIKNGNPKVDKEGKTIIINVEDVNRDERMESTIRHYEHQIFNEHAP
Sbjct: 661 MIIKNGNPKVDKEGKTIIINVEDVNRDERMESTIRHYEHQIFNEHAP 707


>gi|254781004|ref|YP_003065417.1| threonyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 652

 Score = 26.2 bits (56), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 14/44 (31%), Positives = 22/44 (50%)

Query: 210 AHARDPRVFENFMRAFYKKGHPPKDSTSLSDVSDSARERSLEVV 253
            HA    V E+  R+  KK      +  + D+SD  RE S+E++
Sbjct: 19  VHATGSDVAESISRSLAKKAVAVAINGKVCDLSDPVREGSIEII 62


>gi|254780301|ref|YP_003064714.1| dihydroorotase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 431

 Score = 26.2 bits (56), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 18/70 (25%), Positives = 32/70 (45%)

Query: 305 QLNHGITVKPSELIPLEDYTQAYGVEQGTELYNLQQFKSVAAPDVARIKLMSTFDAKKFL 364
           +L   ++ +P+++  L   T   G      L +L    +V A D++ I   + FD + F 
Sbjct: 354 KLIRALSTRPAQIFNLPGGTLQTGTAADIALIDLNYQWTVKADDMSSIHKNTVFDKEFFT 413

Query: 365 QKIDDEYISN 374
            K+   YIS 
Sbjct: 414 GKVVRTYISG 423


>gi|254780607|ref|YP_003065020.1| hypothetical protein CLIBASIA_02470 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 131

 Score = 25.8 bits (55), Expect = 2.7,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 22/49 (44%)

Query: 364 LQKIDDEYISNPSLSLASTMMATKYKEILEKSHRQSMQELNQDAISWGI 412
           L + D    +  S +L    +   YK++LEK  +   +   +  ++W I
Sbjct: 27  LMQADMNQCTGNSFALVKEKLEATYKKVLEKVEKHQRELFEKSQMAWEI 75


>gi|254780450|ref|YP_003064863.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Candidatus Liberibacter asiaticus str. psy62]
          Length = 803

 Score = 25.4 bits (54), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 14/64 (21%), Positives = 28/64 (43%)

Query: 607 VLGNTPVNINESMLMPPRGMSKTDFEDRLWYATKDTGEYDPYTIKYMNVGSGKYMIIKNG 666
           V+GN  + I + +  PP+     D+E  LW    D  +++   +          M+ ++G
Sbjct: 495 VIGNLRMMIQKLISEPPQVKLTVDYERDLWGVKTDLSQFEQVLVNLCVNAHHAIMLKESG 554

Query: 667 NPKV 670
           +  V
Sbjct: 555 SLTV 558


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.314    0.130    0.361 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 436,609
Number of Sequences: 1233
Number of extensions: 18102
Number of successful extensions: 40
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 33
Number of HSP's gapped (non-prelim): 9
length of query: 707
length of database: 328,796
effective HSP length: 80
effective length of query: 627
effective length of database: 230,156
effective search space: 144307812
effective search space used: 144307812
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 42 (20.8 bits)