Query         gi|254781205|ref|YP_003065618.1| hypothetical protein CLIBASIA_05560 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 171
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Wed Jun  1 22:55:14 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781205.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >2jrz_A Histone demethylase ja  32.6      21 0.00064   16.8   1.5   40  120-163    10-49  (76)
  2 >2jxj_A Histone demethylase ja  21.8      28 0.00084   16.1   0.5   34  130-163    16-49  (59)
  3 >2g8g_A Capsid; adeno-associat  15.3      41  0.0012   15.2   0.2   22  132-155    29-50  (55)
  4 >2yrk_A Zinc finger homeobox p  11.8      48  0.0014   14.9  -0.3   17   26-42     19-35  (55)
  5 >2eqy_A RBP2 like, jumonji, at  10.8 1.1E+02  0.0033   12.8   1.3   26  130-155    59-84  (122)
  6 >1f53_A Yeast killer toxin-lik  10.7      55  0.0016   14.6  -0.3   30  122-151    51-80  (84)
  7 >3efz_A 14-3-3 protein; 14-3-3   9.9      67   0.002   14.1  -0.1   83   27-117     4-87  (133)
  8 >2cxy_A BAF250B subunit, HBAF2   9.8 1.3E+02  0.0038   12.5   1.8   35  129-163    67-101 (125)
  9 >1yhn_B RILP, RAB interacting    9.4      73  0.0022   13.9  -0.1   32   39-70      3-34  (65)
 10 >3a3j_A PBP5; penicillin bindi   9.1 1.3E+02  0.0037   12.6   1.0   15    3-17     31-45  (80)

No 1  
>>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A (A:42-117)
Probab=32.61  E-value=21  Score=16.81  Aligned_cols=40  Identities=28%  Similarity=0.405  Sum_probs=28.6

Q ss_pred             HHHCHHHHHHHHHHCCCCEEEHHCCCCHHHCCHHHHHHHHHHHH
Q ss_conf             64121121066642154200001047701100013568888762
Q gi|254781205|r  120 KEAGWHRANKEAVKNNRWASVAAIAGPPMVESASSAGMKMFRRY  163 (171)
Q Consensus       120 keagwhrankeavknnrwasvaaiagppmvesassagmkmfrry  163 (171)
                      +..|+.    +..++++|..|+...|-|-..+++..=-..+.+|
T Consensus        10 ~~GG~~----~V~~~~~W~~V~~~lg~~~~~~~~~~lk~~Y~k~   49 (76)
T 2jrz_A           10 EEGGYE----AICKDRRWARVAQRLNYPPGKNIGSLLRSHYERI   49 (76)
T ss_dssp             HHTCHH----HHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHT
T ss_pred             HHCCCC----CCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf             965840----0376572999999968898886899999999999


No 2  
>>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens} (A:38-96)
Probab=21.81  E-value=28  Score=16.15  Aligned_cols=34  Identities=18%  Similarity=0.238  Sum_probs=24.4

Q ss_pred             HHHHCCCCEEEHHCCCCHHHCCHHHHHHHHHHHH
Q ss_conf             6642154200001047701100013568888762
Q gi|254781205|r  130 EAVKNNRWASVAAIAGPPMVESASSAGMKMFRRY  163 (171)
Q Consensus       130 eavknnrwasvaaiagppmvesassagmkmfrry  163 (171)
                      ...++++|..|+...|.|...+++..=-+.+.+|
T Consensus        16 ~V~~~~~W~~i~~~lg~~~~~~~~~~lk~~Y~k~   49 (59)
T 2jxj_A           16 MVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERI   49 (59)
T ss_dssp             HHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTT
T ss_pred             HHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf             5021061999999868898786899999999999


No 3  
>>2g8g_A Capsid; adeno-associated virus serotype 4, gene therapy, icosahedral virus; HET: D5M; 3.20A {Adeno-associated virus - 4} (A:271-325)
Probab=15.32  E-value=41  Score=15.24  Aligned_cols=22  Identities=27%  Similarity=0.806  Sum_probs=15.4

Q ss_pred             HHCCCCEEEHHCCCCHHHCCHHHH
Q ss_conf             421542000010477011000135
Q gi|254781205|r  132 VKNNRWASVAAIAGPPMVESASSA  155 (171)
Q Consensus       132 vknnrwasvaaiagppmvesassa  155 (171)
                      .-|+||...+  .||||...+.++
T Consensus        29 tl~grwsn~a--pgppmatag~~d   50 (55)
T 2g8g_A           29 TLDGRWSALT--PGPPMATAGPAD   50 (55)
T ss_dssp             EETTEEEECC--SCSCCBCCCSSS
T ss_pred             CCCCCCCCCC--CCCCCCCCCCCC
T ss_conf             3367652202--488744468755


No 4  
>>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} (A:)
Probab=11.82  E-value=48  Score=14.86  Aligned_cols=17  Identities=41%  Similarity=0.472  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHHHHHH
Q ss_conf             34666655321246788
Q gi|254781205|r   26 SSTLASHRSSIRDHEYR   42 (171)
Q Consensus        26 sstlashrssirdheyr   42 (171)
                      -..--|||.|||||-+-
T Consensus        19 C~vKYs~r~SvrDHIFS   35 (55)
T 2yrk_A           19 CGVKYSARLSIRDHIFS   35 (55)
T ss_dssp             TTCCCCSSSCHHHHHTS
T ss_pred             CCEEEEEEEEHHHHHCC
T ss_conf             25142102031331210


No 5  
>>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus} (A:)
Probab=10.78  E-value=1.1e+02  Score=12.84  Aligned_cols=26  Identities=19%  Similarity=0.340  Sum_probs=17.7

Q ss_pred             HHHHCCCCEEEHHCCCCHHHCCHHHH
Q ss_conf             66421542000010477011000135
Q gi|254781205|r  130 EAVKNNRWASVAAIAGPPMVESASSA  155 (171)
Q Consensus       130 eavknnrwasvaaiagppmvesassa  155 (171)
                      +..+++.|+.|+.-.|.|--.+++..
T Consensus        59 ~V~~~~~W~~ia~~lg~~~~~~~~~~   84 (122)
T 2eqy_A           59 VVCKDRKWTKIATKMGFAPGKAVGSH   84 (122)
T ss_dssp             HHHHTTTHHHHHHHTTCCSSSHHHHH
T ss_pred             HHCCCCCHHHHHHHHCCCCCCCHHHH
T ss_conf             41421619999998689976738999


No 6  
>>1f53_A Yeast killer toxin-like protein; killer toxin-like protein,SKLP, crystallin family; NMR {Streptomyces SP} (A:)
Probab=10.70  E-value=55  Score=14.56  Aligned_cols=30  Identities=30%  Similarity=0.527  Sum_probs=25.0

Q ss_pred             HCHHHHHHHHHHCCCCEEEHHCCCCHHHCC
Q ss_conf             121121066642154200001047701100
Q gi|254781205|r  122 AGWHRANKEAVKNNRWASVAAIAGPPMVES  151 (171)
Q Consensus       122 agwhrankeavknnrwasvaaiagppmves  151 (171)
                      .-||.||-..|+-+||..+.----||-|..
T Consensus        51 v~yydanGd~v~i~r~~~it~PnrPp~V~~   80 (84)
T 1f53_A           51 LIYYDANGDSVRVDRWHDITYPNRPPKVNS   80 (84)
T ss_dssp             CEEEETTTEEEECCSSCEECCSSSCCCCCB
T ss_pred             EEEEECCCCEEEECCEEEEECCCCCCCCCE
T ss_conf             798726897478532568643899985238


No 7  
>>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genomics, structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} (A:1-133)
Probab=9.92  E-value=67  Score=14.09  Aligned_cols=83  Identities=16%  Similarity=0.068  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECC-CHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHCCCH
Q ss_conf             4666655321246788887542100000234412-036766401334278899886046655136665146410220331
Q gi|254781205|r   27 STLASHRSSIRDHEYRSLLAEENALRADVLYLDR-EDQARREGIMDTGVFRMKAVLSGVSGASLDLLVGQNTRNAYKGIN  105 (171)
Q Consensus        27 stlashrssirdheyrsllaeenalradvlyldr-edqarregimdtgvfrmkavlsgvsgasldllvgqntrnaykgin  105 (171)
                      +.-.-|.|+-|++.|-+.+...+.-|.+.+|+-+ -+||-|-.=|-   -.||.+-.-.+----.||     --|||.+-
T Consensus         4 ~~~~~~~~~~~~n~~~~~~~~~~~~re~~v~~AKLaeqaeRydDMv---~~mke~~~eLs~EERNLL-----SVAYKNvI   75 (133)
T 3efz_A            4 SHHHHHHSSGRENLYFQGITEKNMKLSEGAYRAKLADMVGNYKDVI---KVLTESSDFRDNSLILLL-----AGSLRNRV   75 (133)
T ss_dssp             ------------------------------------------CHHH---HHHTC-----CCHHHHHH-----HHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH---HHHHHHHHHCCHHHHHHH-----HHHHHHHH
T ss_conf             6434445532013588641064322789999999999986899999---999999875289999999-----99986653


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             344567889999
Q gi|254781205|r  106 TARTAREQTVAR  117 (171)
Q Consensus       106 tartareqtvar  117 (171)
                      .+|-+--.++..
T Consensus        76 g~rR~swRiiss   87 (133)
T 3efz_A           76 TSIRNSLKSIKS   87 (133)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
T ss_conf             317999999889


No 8  
>>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A (A:)
Probab=9.82  E-value=1.3e+02  Score=12.54  Aligned_cols=35  Identities=26%  Similarity=0.357  Sum_probs=23.6

Q ss_pred             HHHHHCCCCEEEHHCCCCHHHCCHHHHHHHHHHHH
Q ss_conf             66642154200001047701100013568888762
Q gi|254781205|r  129 KEAVKNNRWASVAAIAGPPMVESASSAGMKMFRRY  163 (171)
Q Consensus       129 keavknnrwasvaaiagppmvesassagmkmfrry  163 (171)
                      .+..+++.|..|+.-.|-|.-.+++..=-+.+.+|
T Consensus        67 ~~v~~~~~W~~ia~~lg~~~~~~~~~~lk~~Y~k~  101 (125)
T 2cxy_A           67 AQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQY  101 (125)
T ss_dssp             HHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHH
T ss_pred             HHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf             64165264999999858997786999999999999


No 9  
>>1yhn_B RILP, RAB interacting lysosomal protein; protein transport; HET: GTP; 3.00A {Homo sapiens} (B:)
Probab=9.42  E-value=73  Score=13.88  Aligned_cols=32  Identities=28%  Similarity=0.467  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHHHHEEEEECCCHHHHHHHHH
Q ss_conf             67888875421000002344120367664013
Q gi|254781205|r   39 HEYRSLLAEENALRADVLYLDREDQARREGIM   70 (171)
Q Consensus        39 heyrsllaeenalradvlyldredqarregim   70 (171)
                      .|.|..|-|-|-|.+.|+.+.-|-|--.-|++
T Consensus         3 qELrdVLqERNeLKa~lfl~QEEL~yYkse~l   34 (65)
T 1yhn_B            3 EEFEQILQERNELKAKVFLLKEELAYFQRELL   34 (65)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             88999999998988879989999999999986


No 10 
>>3a3j_A PBP5; penicillin binding protein 5, DACA, hydrolase; 2.15A {Haemophilus influenzae} (A:56-113,A:170-191)
Probab=9.07  E-value=1.3e+02  Score=12.55  Aligned_cols=15  Identities=27%  Similarity=0.397  Sum_probs=11.1

Q ss_pred             CCHHHHHHHHHHHHH
Q ss_conf             336777765542101
Q gi|254781205|r    3 IGMDDLLYGLSLASP   17 (171)
Q Consensus         3 igmddllyglslasp   17 (171)
                      +-++|||||+-+.|-
T Consensus        31 ~tv~dLL~glli~Sa   45 (80)
T 3a3j_A           31 VSVADLNRGVIVVSG   45 (80)
T ss_dssp             EEHHHHHHHHHHHCC
T ss_pred             EEHHHHHHHHHHHCC
T ss_conf             889999866666236


Done!