Query gi|254781205|ref|YP_003065618.1| hypothetical protein CLIBASIA_05560 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 171 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed Jun 1 22:55:14 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781205.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2jrz_A Histone demethylase ja 32.6 21 0.00064 16.8 1.5 40 120-163 10-49 (76) 2 >2jxj_A Histone demethylase ja 21.8 28 0.00084 16.1 0.5 34 130-163 16-49 (59) 3 >2g8g_A Capsid; adeno-associat 15.3 41 0.0012 15.2 0.2 22 132-155 29-50 (55) 4 >2yrk_A Zinc finger homeobox p 11.8 48 0.0014 14.9 -0.3 17 26-42 19-35 (55) 5 >2eqy_A RBP2 like, jumonji, at 10.8 1.1E+02 0.0033 12.8 1.3 26 130-155 59-84 (122) 6 >1f53_A Yeast killer toxin-lik 10.7 55 0.0016 14.6 -0.3 30 122-151 51-80 (84) 7 >3efz_A 14-3-3 protein; 14-3-3 9.9 67 0.002 14.1 -0.1 83 27-117 4-87 (133) 8 >2cxy_A BAF250B subunit, HBAF2 9.8 1.3E+02 0.0038 12.5 1.8 35 129-163 67-101 (125) 9 >1yhn_B RILP, RAB interacting 9.4 73 0.0022 13.9 -0.1 32 39-70 3-34 (65) 10 >3a3j_A PBP5; penicillin bindi 9.1 1.3E+02 0.0037 12.6 1.0 15 3-17 31-45 (80) No 1 >>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A (A:42-117) Probab=32.61 E-value=21 Score=16.81 Aligned_cols=40 Identities=28% Similarity=0.405 Sum_probs=28.6 Q ss_pred HHHCHHHHHHHHHHCCCCEEEHHCCCCHHHCCHHHHHHHHHHHH Q ss_conf 64121121066642154200001047701100013568888762 Q gi|254781205|r 120 KEAGWHRANKEAVKNNRWASVAAIAGPPMVESASSAGMKMFRRY 163 (171) Q Consensus 120 keagwhrankeavknnrwasvaaiagppmvesassagmkmfrry 163 (171) +..|+. +..++++|..|+...|-|-..+++..=-..+.+| T Consensus 10 ~~GG~~----~V~~~~~W~~V~~~lg~~~~~~~~~~lk~~Y~k~ 49 (76) T 2jrz_A 10 EEGGYE----AICKDRRWARVAQRLNYPPGKNIGSLLRSHYERI 49 (76) T ss_dssp HHTCHH----HHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHT T ss_pred HHCCCC----CCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHH T ss_conf 965840----0376572999999968898886899999999999 No 2 >>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens} (A:38-96) Probab=21.81 E-value=28 Score=16.15 Aligned_cols=34 Identities=18% Similarity=0.238 Sum_probs=24.4 Q ss_pred HHHHCCCCEEEHHCCCCHHHCCHHHHHHHHHHHH Q ss_conf 6642154200001047701100013568888762 Q gi|254781205|r 130 EAVKNNRWASVAAIAGPPMVESASSAGMKMFRRY 163 (171) Q Consensus 130 eavknnrwasvaaiagppmvesassagmkmfrry 163 (171) ...++++|..|+...|.|...+++..=-+.+.+| T Consensus 16 ~V~~~~~W~~i~~~lg~~~~~~~~~~lk~~Y~k~ 49 (59) T 2jxj_A 16 MVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERI 49 (59) T ss_dssp HHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTT T ss_pred HHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHH T ss_conf 5021061999999868898786899999999999 No 3 >>2g8g_A Capsid; adeno-associated virus serotype 4, gene therapy, icosahedral virus; HET: D5M; 3.20A {Adeno-associated virus - 4} (A:271-325) Probab=15.32 E-value=41 Score=15.24 Aligned_cols=22 Identities=27% Similarity=0.806 Sum_probs=15.4 Q ss_pred HHCCCCEEEHHCCCCHHHCCHHHH Q ss_conf 421542000010477011000135 Q gi|254781205|r 132 VKNNRWASVAAIAGPPMVESASSA 155 (171) Q Consensus 132 vknnrwasvaaiagppmvesassa 155 (171) .-|+||...+ .||||...+.++ T Consensus 29 tl~grwsn~a--pgppmatag~~d 50 (55) T 2g8g_A 29 TLDGRWSALT--PGPPMATAGPAD 50 (55) T ss_dssp EETTEEEECC--SCSCCBCCCSSS T ss_pred CCCCCCCCCC--CCCCCCCCCCCC T ss_conf 3367652202--488744468755 No 4 >>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} (A:) Probab=11.82 E-value=48 Score=14.86 Aligned_cols=17 Identities=41% Similarity=0.472 Sum_probs=12.3 Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 34666655321246788 Q gi|254781205|r 26 SSTLASHRSSIRDHEYR 42 (171) Q Consensus 26 sstlashrssirdheyr 42 (171) -..--|||.|||||-+- T Consensus 19 C~vKYs~r~SvrDHIFS 35 (55) T 2yrk_A 19 CGVKYSARLSIRDHIFS 35 (55) T ss_dssp TTCCCCSSSCHHHHHTS T ss_pred CCEEEEEEEEHHHHHCC T ss_conf 25142102031331210 No 5 >>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus} (A:) Probab=10.78 E-value=1.1e+02 Score=12.84 Aligned_cols=26 Identities=19% Similarity=0.340 Sum_probs=17.7 Q ss_pred HHHHCCCCEEEHHCCCCHHHCCHHHH Q ss_conf 66421542000010477011000135 Q gi|254781205|r 130 EAVKNNRWASVAAIAGPPMVESASSA 155 (171) Q Consensus 130 eavknnrwasvaaiagppmvesassa 155 (171) +..+++.|+.|+.-.|.|--.+++.. T Consensus 59 ~V~~~~~W~~ia~~lg~~~~~~~~~~ 84 (122) T 2eqy_A 59 VVCKDRKWTKIATKMGFAPGKAVGSH 84 (122) T ss_dssp HHHHTTTHHHHHHHTTCCSSSHHHHH T ss_pred HHCCCCCHHHHHHHHCCCCCCCHHHH T ss_conf 41421619999998689976738999 No 6 >>1f53_A Yeast killer toxin-like protein; killer toxin-like protein,SKLP, crystallin family; NMR {Streptomyces SP} (A:) Probab=10.70 E-value=55 Score=14.56 Aligned_cols=30 Identities=30% Similarity=0.527 Sum_probs=25.0 Q ss_pred HCHHHHHHHHHHCCCCEEEHHCCCCHHHCC Q ss_conf 121121066642154200001047701100 Q gi|254781205|r 122 AGWHRANKEAVKNNRWASVAAIAGPPMVES 151 (171) Q Consensus 122 agwhrankeavknnrwasvaaiagppmves 151 (171) .-||.||-..|+-+||..+.----||-|.. T Consensus 51 v~yydanGd~v~i~r~~~it~PnrPp~V~~ 80 (84) T 1f53_A 51 LIYYDANGDSVRVDRWHDITYPNRPPKVNS 80 (84) T ss_dssp CEEEETTTEEEECCSSCEECCSSSCCCCCB T ss_pred EEEEECCCCEEEECCEEEEECCCCCCCCCE T ss_conf 798726897478532568643899985238 No 7 >>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genomics, structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} (A:1-133) Probab=9.92 E-value=67 Score=14.09 Aligned_cols=83 Identities=16% Similarity=0.068 Sum_probs=51.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECC-CHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHCCCH Q ss_conf 4666655321246788887542100000234412-036766401334278899886046655136665146410220331 Q gi|254781205|r 27 STLASHRSSIRDHEYRSLLAEENALRADVLYLDR-EDQARREGIMDTGVFRMKAVLSGVSGASLDLLVGQNTRNAYKGIN 105 (171) Q Consensus 27 stlashrssirdheyrsllaeenalradvlyldr-edqarregimdtgvfrmkavlsgvsgasldllvgqntrnaykgin 105 (171) +.-.-|.|+-|++.|-+.+...+.-|.+.+|+-+ -+||-|-.=|- -.||.+-.-.+----.|| --|||.+- T Consensus 4 ~~~~~~~~~~~~n~~~~~~~~~~~~re~~v~~AKLaeqaeRydDMv---~~mke~~~eLs~EERNLL-----SVAYKNvI 75 (133) T 3efz_A 4 SHHHHHHSSGRENLYFQGITEKNMKLSEGAYRAKLADMVGNYKDVI---KVLTESSDFRDNSLILLL-----AGSLRNRV 75 (133) T ss_dssp ------------------------------------------CHHH---HHHTC-----CCHHHHHH-----HHHHHHHH T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH---HHHHHHHHHCCHHHHHHH-----HHHHHHHH T ss_conf 6434445532013588641064322789999999999986899999---999999875289999999-----99986653 Q ss_pred HHHHHHHHHHHH Q ss_conf 344567889999 Q gi|254781205|r 106 TARTAREQTVAR 117 (171) Q Consensus 106 tartareqtvar 117 (171) .+|-+--.++.. T Consensus 76 g~rR~swRiiss 87 (133) T 3efz_A 76 TSIRNSLKSIKS 87 (133) T ss_dssp HHHHHHHHHHHH T ss_pred CHHHHHHHHHHH T ss_conf 317999999889 No 8 >>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A (A:) Probab=9.82 E-value=1.3e+02 Score=12.54 Aligned_cols=35 Identities=26% Similarity=0.357 Sum_probs=23.6 Q ss_pred HHHHHCCCCEEEHHCCCCHHHCCHHHHHHHHHHHH Q ss_conf 66642154200001047701100013568888762 Q gi|254781205|r 129 KEAVKNNRWASVAAIAGPPMVESASSAGMKMFRRY 163 (171) Q Consensus 129 keavknnrwasvaaiagppmvesassagmkmfrry 163 (171) .+..+++.|..|+.-.|-|.-.+++..=-+.+.+| T Consensus 67 ~~v~~~~~W~~ia~~lg~~~~~~~~~~lk~~Y~k~ 101 (125) T 2cxy_A 67 AQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQY 101 (125) T ss_dssp HHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHH T ss_pred HHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHH T ss_conf 64165264999999858997786999999999999 No 9 >>1yhn_B RILP, RAB interacting lysosomal protein; protein transport; HET: GTP; 3.00A {Homo sapiens} (B:) Probab=9.42 E-value=73 Score=13.88 Aligned_cols=32 Identities=28% Similarity=0.467 Sum_probs=26.3 Q ss_pred HHHHHHHHHHHHHHHEEEEECCCHHHHHHHHH Q ss_conf 67888875421000002344120367664013 Q gi|254781205|r 39 HEYRSLLAEENALRADVLYLDREDQARREGIM 70 (171) Q Consensus 39 heyrsllaeenalradvlyldredqarregim 70 (171) .|.|..|-|-|-|.+.|+.+.-|-|--.-|++ T Consensus 3 qELrdVLqERNeLKa~lfl~QEEL~yYkse~l 34 (65) T 1yhn_B 3 EEFEQILQERNELKAKVFLLKEELAYFQRELL 34 (65) T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 88999999998988879989999999999986 No 10 >>3a3j_A PBP5; penicillin binding protein 5, DACA, hydrolase; 2.15A {Haemophilus influenzae} (A:56-113,A:170-191) Probab=9.07 E-value=1.3e+02 Score=12.55 Aligned_cols=15 Identities=27% Similarity=0.397 Sum_probs=11.1 Q ss_pred CCHHHHHHHHHHHHH Q ss_conf 336777765542101 Q gi|254781205|r 3 IGMDDLLYGLSLASP 17 (171) Q Consensus 3 igmddllyglslasp 17 (171) +-++|||||+-+.|- T Consensus 31 ~tv~dLL~glli~Sa 45 (80) T 3a3j_A 31 VSVADLNRGVIVVSG 45 (80) T ss_dssp EEHHHHHHHHHHHCC T ss_pred EEHHHHHHHHHHHCC T ss_conf 889999866666236 Done!